diff --git a/.github/workflows/draft.yml b/.github/workflows/draft.yml new file mode 100644 index 0000000..91adc39 --- /dev/null +++ b/.github/workflows/draft.yml @@ -0,0 +1,18 @@ +name: Create Preview Draft from PR +on: + pull_request: + branches: ['main'] +permissions: + contents: read + pull-requests: write +jobs: + draft: + uses: curvenote/actions/.github/workflows/draft.yml@v1 + with: + venue: microscopy + kind: article + collection: articles + id-pattern-regex: '^msa-em-[a-zA-Z0-9_-]{1,30}$' + secrets: + CURVENOTE: ${{ secrets.CURVENOTE_TOKEN }} + GITHUB: ${{ secrets.GITHUB_TOKEN }} diff --git a/.github/workflows/submit.yml b/.github/workflows/submit.yml new file mode 100644 index 0000000..8a0638a --- /dev/null +++ b/.github/workflows/submit.yml @@ -0,0 +1,17 @@ +name: Create Submission from Main +on: + push: + branches: ['main'] +permissions: + contents: write +jobs: + submit: + uses: curvenote/actions/.github/workflows/submit.yml@v1 + with: + venue: microscopy + kind: article + collection: articles + id-pattern-regex: '^msa-em-[a-zA-Z0-9_-]{1,30}$' + secrets: + CURVENOTE: ${{ secrets.CURVENOTE_TOKEN }} + GITHUB: ${{ secrets.GITHUB_TOKEN }} diff --git a/03_derivations.md b/03_derivations.md index 250bbef..7ae07a4 100644 --- a/03_derivations.md +++ b/03_derivations.md @@ -950,6 +950,7 @@ dislocation microstructures in three dimensions {cite:p}`liu2011three, hata2020e :::{figure} #app:AgAu_tilt_series :name: fig21_interactive +:placeholder: images/ag-au-interactive.png Tilt series collected across a Ag-Au grain boundary exhibiting void evolution ahead of an stress corrosion cracking (SCC) tip in the binary alloy {cite:p}`badwe2018decoupling`. diff --git a/04_applications.md b/04_applications.md index b429082..1f24db0 100644 --- a/04_applications.md +++ b/04_applications.md @@ -171,6 +171,7 @@ beneficial to understanding crystallographic data of an unknown sample. :::{figure} #app:superellipse :name: fig29 +:placeholder: images/superellipse.png Double tilt stage limits as calculated through a squircle (superellipse) estimation using various r values. diff --git a/banner.png b/banner.png new file mode 100644 index 0000000..b8e8342 Binary files /dev/null and b/banner.png differ diff --git a/images/ag-au-interactive.png b/images/ag-au-interactive.png new file mode 100644 index 0000000..9e37e82 Binary files /dev/null and b/images/ag-au-interactive.png differ diff --git a/images/superellipse.png b/images/superellipse.png new file mode 100644 index 0000000..235719a Binary files /dev/null and b/images/superellipse.png differ diff --git a/main.bib b/main.bib index 0fc8d2e..10ef1ec 100644 --- a/main.bib +++ b/main.bib @@ -15,7 +15,7 @@ @article{alam1954high volume={221}, pages={224--242}, year={1954}, - doi={https://10.1098/rspa.1954.0017} + doi={https://doi.org/10.1098/rspa.1954.0017} } @book{aroyo2016international, @@ -125,7 +125,6 @@ @article{Cole2015 year = "2015", month = "6", url = "https://repository.lboro.ac.uk/articles/thesis/Modelling_CPV/9523520", -doi={https://repository.lboro.ac.uk/articles/thesis/Modelling_CPV/9523520?fbclid=IwAR3vekW7G3j4FAvlvNrkupa5WrL6mGQi7I8dIsf5FoYtyZPxan7cXJ0-UQs} } @book{council1995global, @@ -331,7 +330,7 @@ @article{li2016spica volume={49}, pages={1818--1826}, year={2016}, - doi={ https://doi.org/10.1107/S1600576716011109} + doi={https://doi.org/10.1107/S1600576716011109} } @article{lidke2012advances, @@ -363,7 +362,7 @@ @article{liu1994simple number={4}, pages={755--761}, year={1994}, - doi={ https://doi.org/10.1107/S0021889894002062} + doi={https://doi.org/10.1107/S0021889894002062} } @article{liu1995simple, @@ -407,7 +406,7 @@ @article{midgley2015precession number={2}, pages={126--136}, year={2015}, - doi={https://doi/org/10.1107/S2052252514022283} + doi={https://doi.org/10.1107/S2052252514022283} } @article{moeck2006transmission, @@ -433,7 +432,7 @@ @article{olszta2014high author={Olszta, M and Schreiber, DK and Bruemmer, SM}, journal={NACE - International Corrosion Conference Series}, year={2014}, - doi={https://onepetro.org/NACECORR/proceedings-abstract/CORR14/All-CORR14/NACE-2014-4251/123100} + url={https://onepetro.org/NACECORR/proceedings-abstract/CORR14/All-CORR14/NACE-2014-4251/123100} } @article{olszta2022stage, @@ -697,7 +696,7 @@ @article{zhang2018atomic pages={675--679}, year={2018}, publisher={Nature Publishing Group}, - doi={https://doi.org/DOI: 10.1126/science.aao0865} + doi={https://doi.org/10.1126/science.aao0865} } @article{zhu2018towards, diff --git a/myst.yml b/myst.yml index 346350c..e2bedbf 100644 --- a/myst.yml +++ b/myst.yml @@ -1,19 +1,33 @@ # See docs at: https://myst-tools.org/docs/mystjs/frontmatter version: 1 project: + id: msa-em-nanocartography + doi: 10.69761/DNKA1581 title: 'Nanocartography: Planning for success in analytical electron microscopy' short_title: Nanocartography + description: With the increasing diversity in material systems, ever-expanding number of analysis techniques, and the large capital costs of next generation instruments the ability to quickly and efficiently collect data in the electron microscope has become paramount to successful data analysis. + banner: banner.png + thumbnail: thumbnail.webp authors: - name: Matthew J Olszta - affiliation: Pacific Northwest National Laboratory, Richland, WA 99354, USA + affiliations: + - name: Pacific Northwest National Laboratory, Richland, WA 99354, USA + ror: 05h992307 phone: (509) 371-7217 fax: (509) 375-3033 email: matthew.olszta@pnnl.gov - name: Kevin R Fiedler - affiliation: Washington State University, Tri-Cities, Richland, WA, 99354, USA + orcid: 0000-0002-9656-7663 + affiliations: + - name: Washington State University, Tri-Cities, Richland, WA, 99354, USA + ror: 05dk0ce17 + funding: + - statement: Pacific Northwest National Laboratory is a multiprogram national laboratory operated by Battelle for the U.S. Department of Energy under contract DEAC05-76RL01830. + id: DEAC05-76RL01830 + source: + - name: U.S. Department of Energy Office of Science, Basic Energy Sciences, Materials Sciences and Engineering Division + doi: 10.13039/100000015 keywords: [] - # github: - # bibliography: [] numbering: heading_2: true heading_3: true @@ -44,18 +58,9 @@ project: XEDS: x-ray energy-dispersive Spectroscopy IPF: inverse pole figure DOE: Department of Energy - thebe: - server: true + github: https://github.com/msa-em/nanocartography + jupyter: true + open_access: true + license: CC-BY-4.0 site: template: book-theme - title: Nanocartography - logo_text: Nanocartography - nav: [] - projects: - - slug: myst - path: . - actions: - - title: Learn More - url: https://myst-tools.org/docs/mystjs - domains: [] - diff --git a/thumbnail.webp b/thumbnail.webp new file mode 100644 index 0000000..1cd51c5 Binary files /dev/null and b/thumbnail.webp differ