myst.yml

# See docs at: https://myst.tools/docs/mystjs/frontmatter
version: 1
project:
  doi: 10.69761/MXVR4353
  id: msa-em-fused-multi-modal-em-1
  title: Fused Multi-Modal Electron Microscopy
  subtitle: A beginner's guide
  description: Tutorial for 2D fused multi-modal electron microscopy
  #  jupyter: true
  jupyter:
    binder:
      url: https://y2j74k9mn0bz.curvenote.dev/services/binder/
      repo: msa-em/fused-multi-modal-em
      ref: main
  #  jupyter:
  #    server:
  #      url: 'http://localhost:8888'
  #      token: '512ac78f14e1141db1fac17e8b4099c1e5bc7d589518b38c'
  keywords:
    - Scanning Transmission Electron Microscopy
    - High Angle Annular Dark Field
    - Electron Energy Loss Spectroscopy
    - Energy Dispersive X-ray Spectroscopy
    - Fused Multi-Modal Microscopy
  venue:
    title: Elemental Microscopy
    short_title: EM
    doi: 10.69761/EM
  authors:
    - name: Jason Manassa
      corresponding: True
      affiliations:
        - id: umich
          department: Department of Materials Science and Engineering
          institution: University of Michigan
          address: Ann Arbor, MI, USA
          ror: 00jmfr291
      orcid: 0000-0001-5167-5989
      email: jmanassa@umich.edu
    - name: Miti Shah
      affiliations: [umich]
      orcid: 0000-0002-2142-7295
    - name: Min Gee Cho
      affiliations:
        - id: berkeley
          department: Department of Materials Science and Engineering
          institution: University of California, Berkeley
          address: Berkeley, CA, USA
          ror: 01an7q238
        - id: ncem
          department: National Center for Electron Microscopy, Molecular Foundry
          institution: Lawrence Berkeley National Laboratory
          address: 1 Cyclotron Road, Berkeley, CA, USA, 94720
          ror: 02jbv0t02
      orcid: 0000-0003-4490-7352
    - name: Zichao Wendy Di
      affiliations:
        - id: argonne
          department: Mathematics and Computer Science Division
          institution: Argonne National Laboratory
          address: Lemont, IL, USA
          ror: 05gvnxz63
      orcid: 0000-0002-4131-9363
    - name: Yi Jiang
      affiliations:
        - id: argonne-aps
          department: Advanced Photon Source Facility
          institution: Argonne National Laboratory
          address: Lemont, IL, USA
          ror: 05gvnxz63
      orcid: 0000-0002-2807-1324
    - name: Jeffrey A. Fessler
      affiliations:
        - id: umich-eecs
          department: Department of Electrical Engineering and Computer Science
          institution: University of Michigan
          address: Ann Arbor, MI, USA
          ror: 00jmfr291
      orcid: 0000-0001-9998-3315
    - name: Yu-Tsun Shao
      affiliations:
        - id: usc
          department: Mork Family Department of Chemical Engineering and Materials Science
          institution: University of Southern California
          address: Los Angeles, CA, USA
          ror: 03taz7m60
      orcid: 0000-0002-5574-0490
    - name: Mary C. Scott
      affiliations: [berkeley, ncem]
      orcid: 0000-0002-9543-6725
    - name: Jonathan Schwartz
      corresponding: True
      affiliations:
        - id: czii
          institution: Chan Zuckerberg Imaging Institute
          address: Redwood City, CA, USA
          ror: 02qenvm24
      orcid: 0000-0002-8063-6951
      email: jtschwar@gmail.com
    - name: Robert Hovden
      corresponding: True
      affiliations: [umich]
      orcid: 0000-0002-3403-8803
      email: hovden@umich.edu
  open_access: true
  license: CC-BY-4.0
  github: https://github.com/msa-em/fused-multi-modal-em
  date: 2024-09-24
  history:
    submitted: 2024-09-24
  #   published: 2024-07-27
  exports:
    - format: pdf
    - format: meca
  banner: banner.png
  exclude:
    - README.md
  abbreviations:
    DOI: digital object identifier
    FFT: fast Fourier transform
    HAADF: high angle annular dark field
    EELS: elastic energy loss spectroscopy
    X-EDS: energy-dispersive x-ray spectroscopy
    MM: multi-modal
    TV: total variation
    GP: gradient projection method
    FGP: fast gradient projection method
    STEM: scanning transmission electron microscopy
    SNR: signal-to-noise ratio
    tif: tag image file format
    sr: steradian

site:
  template: book-theme