myst.yml

# See docs at: https://mystmd.org/guide/frontmatter
version: 1
project:
  id: msa-em-article-template-1
  title: Article template for Elemental Microscopy
  description: An article template for the Elemental Microscopy journal focused on educational and informative content.
  short_title: EM Template
  doi: 10.69761/TAMJ0615
  keywords:
    - Article Template
    - Computational Article
  github: https://github.com/msa-em/em-template
  jupyter: true
  #  jupyter:
  #    binder:
  #      url: https://y2j74k9mn0bz.curvenote.dev/services/binder/
  #      repo: msa-em/em-template
  #      ref: main
  #  jupyter:
  #    server:
  #      url: 'http://localhost:8888'
  #      token: '512ac78f14e1141db1fac17e8b4099c1e5bc7d589518b38c'
  open_access: true
  license: CC-BY-4.0
  banner: banner.png
  thumbnail: thumbnail.webp
  date: 2024-07-24
  history:
    submitted: 2023-06-09
    published: 2024-07-24
  requirements:
    - 'environment.yml'
  resources:
    - 'notebooks/**/*'
  references:
    mystmd: https://mystmd.org/guide
  exports:
    - format: meca
  exclude:
    - README.md
  authors:
    - id: cophus
      name: Colin Ophus
      corresponding: true
      email: cophus@gmail.com
      orcid: 0000-0003-2348-8558
      affiliations:
        - id: ncem
          department: National Center for Electron Microscopy, Molecular Foundry
          institution: Lawrence Berkeley National Laboratory
          address: 1 Cyclotron Road, Berkeley, CA, USA, 94720
          ror: 02jbv0t02
      roles:
        - Conceptualization
        - Funding acquisition
        - Project administration
        - Supervision
        - Visualization
        - Writing - original draft
    - id: garnavides
      name: Georgios Varnavides
      email: gvarnavides@berkeley.edu
      orcid: 0000-0001-8338-3323
      affiliations:
        - id: miller
          department: Miller Institute for Basic Research in Science
          institution: University of California, Berkeley
          address: 468 Donner Lab, Berkeley, CA, USA, 94720
          ror: 01an7q238
      roles:
        - Conceptualization
        - Software
        - Validation
        - Visualization
        - Writing - original draft
  funding:
    - statement: We thank the Microscopy Society of America for sponsoring this project.
      recipients:
        - cophus
        - garnavides
    - statement: Work at the Molecular Foundry was supported by the Office of Science, Office of Basic Energy Sciences, of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
      id: DE-AC02-05CH11231
      sources:
        - name: Office of Science, Office of Basic Energy Sciences, of the U.S. Department of Energy
          doi: 10.13039/100000015
      recipients:
        - cophus
  abbreviations:
    4D-STEM: four dimensional scanning transmission electron microscopy
    BibTeX: portmanteau of of “bibliography” and TeX (LaTeX)
    DOI: digital object identifier
    EWR: exit wave reconstruction
    FAIR: findable, accessible, interoperable, and reusable
    FFT: fast Fourier transform
    FOV: field-of-view
    GB: grain boundary
    HAADF: high angle annular dark field
    HRTEM: high resolution transmission electron microscopy
    M&M: Microscopy and Microanalysis
    PDF: portable document format
    STEM: scanning transmission electron microscopy
site:
  template: book-theme