From aac6dce0360bd83815268ba07f75bf426a26e653 Mon Sep 17 00:00:00 2001 From: semyonsinchenko Date: Sun, 14 Jul 2024 11:42:36 +0200 Subject: [PATCH 1/5] Drop Spark-2 support and update dependencies - Update deps - Update Ruff - Corresponding updates of pyproject - Slightly update Makefile - Drop Support of Spark2 - Drop Support of Spark 3.1-3.2 - Minimal python is 3.10 from now - Apply new ruff rules - Apply ruff linter On branch 202-drop-pyspark2 Changes to be committed: modified: .github/workflows/ci.yml modified: Makefile modified: poetry.lock modified: pyproject.toml modified: quinn/append_if_schema_identical.py modified: quinn/dataframe_helpers.py modified: quinn/keyword_finder.py modified: quinn/math.py modified: quinn/schema_helpers.py modified: quinn/split_columns.py modified: quinn/transformations.py --- .github/workflows/ci.yml | 40 +- Makefile | 17 + poetry.lock | 2288 +++++++++++++-------------- pyproject.toml | 36 +- quinn/append_if_schema_identical.py | 4 +- quinn/dataframe_helpers.py | 14 +- quinn/keyword_finder.py | 1 + quinn/math.py | 7 +- quinn/schema_helpers.py | 10 +- quinn/split_columns.py | 8 +- quinn/transformations.py | 33 +- 11 files changed, 1194 insertions(+), 1264 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 538a84b2..dc7626f3 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -17,18 +17,12 @@ jobs: fail-fast: false matrix: include: - - pyspark-version: 2.4.8 # latest published 2.x version - pip-packages: "pypandoc==1.7 pyspark==2.4.8" # downgrade of pypandoc necessary - - pyspark-version: 3.0.3 - pip-packages: "pyspark==3.0.3" - - pyspark-version: 3.1.3 - pip-packages: "pyspark==3.1.3" - - pyspark-version: 3.2.4 - pip-packages: "pyspark==3.2.4" - - pyspark-version: 3.3.2 - pip-packages: "pyspark==3.3.2" - - pyspark-version: 3.4.0 - pip-packages: "pyspark==3.4.0" + - pyspark-version: 3.3.4 + pip-packages: "pyspark==3.3.4" + - pyspark-version: 3.4.3 + pip-packages: "pyspark==3.4.3" + - pyspark-version: 3.5.1 + pip-packages: "pyspark==3.5.1" steps: - uses: actions/checkout@v1 @@ -39,33 +33,17 @@ jobs: uses: actions/setup-java@v3 with: distribution: 'zulu' - java-version: '8' # Supported by Spark 2.x & 3.x - - - name: Get supported Python Version depending on PySpark - uses: haya14busa/action-cond@v1 - id: python_version - with: - cond: ${{ startsWith(matrix.pyspark-version, '2.') }} - if_true: '3.7' # latest supported version for PySpark 2.x - if_false: '3.9' # PySpark 3+ + java-version: '17' # Spark 4.0 will drop Java 11; - name: Set up Python ${{ steps.python_version.outputs.value }} uses: actions/setup-python@v2 with: - python-version: ${{ steps.python_version.outputs.value }} - - - name: Get supported Poetry version - uses: haya14busa/action-cond@v1 - id: poetry_version - with: - cond: ${{ startsWith(matrix.pyspark-version, '2.') }} - if_true: '1.5.1' # latest supported version for PySpark 2.x - if_false: '1.6.1' # PySpark 3+ + python-version: '3.10' - name: Install Poetry uses: snok/install-poetry@v1 with: - version: ${{ steps.poetry_version.outputs.value }} + version: '1.6.1' - name: Cache Poetry virtualenv uses: actions/cache@v1 diff --git a/Makefile b/Makefile index 92839dbc..7cf6168c 100644 --- a/Makefile +++ b/Makefile @@ -1,5 +1,7 @@ # COMMON CLI COMMANDS FOR DEVELOPMENT +all: help + .PHONY: install_test install_test: @poetry install --with=development,testing @@ -19,3 +21,18 @@ test: .PHONY: lint lint: @poetry run ruff check --fix quinn + +.PHONY: format +format: + @poetry run ruff format quinn + +.PHONY: help +help: + @echo '................... Quin ..........................' + @echo 'help - print that message' + @echo 'lint - run linter' + @echo 'format - reformat the code' + @echo 'test - run tests' + @echo 'install_test - install test deps' + @echo 'install_deps - install dev deps' + @echo 'update_deps - update and install deps' diff --git a/poetry.lock b/poetry.lock index 4e9931c1..b966b288 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,55 +1,26 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. - -[[package]] -name = "aiofiles" -version = "22.1.0" -description = "File support for asyncio." -optional = false -python-versions = ">=3.7,<4.0" -files = [ - {file = "aiofiles-22.1.0-py3-none-any.whl", hash = "sha256:1142fa8e80dbae46bb6339573ad4c8c0841358f79c6eb50a493dceca14621bad"}, - {file = "aiofiles-22.1.0.tar.gz", hash = "sha256:9107f1ca0b2a5553987a94a3c9959fe5b491fdf731389aa5b7b1bd0733e32de6"}, -] - -[[package]] -name = "aiosqlite" -version = "0.19.0" -description = "asyncio bridge to the standard sqlite3 module" -optional = false -python-versions = ">=3.7" -files = [ - {file = "aiosqlite-0.19.0-py3-none-any.whl", hash = "sha256:edba222e03453e094a3ce605db1b970c4b3376264e56f32e2a4959f948d66a96"}, - {file = "aiosqlite-0.19.0.tar.gz", hash = "sha256:95ee77b91c8d2808bd08a59fbebf66270e9090c3d92ffbf260dc0db0b979577d"}, -] - -[package.dependencies] -typing_extensions = {version = ">=4.0", markers = "python_version < \"3.8\""} - -[package.extras] -dev = ["aiounittest (==1.4.1)", "attribution (==1.6.2)", "black (==23.3.0)", "coverage[toml] (==7.2.3)", "flake8 (==5.0.4)", "flake8-bugbear (==23.3.12)", "flit (==3.7.1)", "mypy (==1.2.0)", "ufmt (==2.1.0)", "usort (==1.0.6)"] -docs = ["sphinx (==6.1.3)", "sphinx-mdinclude (==0.5.3)"] +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. 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\"3.8\""} +typing-extensions = {version = ">=4.1", markers = "python_version < \"3.11\""} [package.extras] -doc = ["Sphinx", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme (>=1.2.2)", "sphinxcontrib-jquery"] -test = ["anyio[trio]", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] -trio = ["trio (<0.22)"] +doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] +test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] +trio = ["trio (>=0.23)"] [[package]] name = "appnope" @@ -75,7 +46,6 @@ files = [ [package.dependencies] argon2-cffi-bindings = "*" -typing-extensions = {version = "*", markers = "python_version < \"3.8\""} [package.extras] dev = ["argon2-cffi[tests,typing]", "tox (>4)"] @@ -122,18 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(>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"] [metadata] lock-version = "2.0" -python-versions = ">=3.7,<4.0" -content-hash = "ac991159dc247652a6701ba66b38ab508fb938345d2102d83ce0da9d141a7ff8" +python-versions = ">=3.9,<4.0" +content-hash = "55aaef99d9e3ff43b14a32ff9fc8219575ad42c8597b4520121a4927bd293b95" diff --git a/pyproject.toml b/pyproject.toml index b0f5ed10..b20c0726 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "quinn" -version = "0.10.3" +version = "1.0" description = "Pyspark helper methods to maximize developer efficiency" authors = ["MrPowers "] @@ -22,7 +22,7 @@ build-backend = "poetry.masonry.api" ########################################################################### [tool.poetry.dependencies] -python = ">=3.7,<4.0" +python = ">=3.9,<4.0" ########################################################################### @@ -42,26 +42,28 @@ optional = true optional = true [tool.poetry.group.development.dependencies] -pyspark = ">2" +pyspark = ">3" semver = "^3" [tool.poetry.group.testing.dependencies] pytest = "^7" -chispa = "0.9.4" +chispa = "^0.10" pytest-describe = "^2" -pyspark = ">2" +pyspark = ">3" semver = "^3" [tool.poetry.group.linting.dependencies] -ruff = "^0.0.291" +ruff = "^0.5" [tool.poetry.group.docs.dependencies] -mkdocstrings-python = "^0.8.3" -mkdocs-gen-files = "^0.4.0" -mkdocs-literate-nav = "^0.6.0" -mkdocs-section-index = "^0.3.5" -markdown-include = "^0.8.1" -mkdocs = "^1" +# All the dependencies related to mkdocs; +# We are pinning only the main version of mkdocs. +mkdocstrings-python = "*" +mkdocs-gen-files = "*" +mkdocs-literate-nav = "*" +mkdocs-section-index = "*" +markdown-include = "*" +mkdocs = "^1.6" jupyterlab = "*" mkdocs-jupyter = "*" mkdocs-material = "*" @@ -74,8 +76,11 @@ markdown-exec = "*" ########################################################################### [tool.ruff] -select = ["ALL"] line-length = 150 +extend-exclude = ["tests", "docs"] + +[tool.ruff.lint] +select = ["ALL"] ignore = [ "D100", "D203", # Ignore blank line before summary of class @@ -94,10 +99,11 @@ ignore = [ "PTH123", # Don't force use of Pathlib "PTH207", # Don't force use of Pathlib "PTH113", # Don't force use of Pathlib + "ISC001", # Recommended by Ruff + "COM812", # Recommended by Ruff ] -extend-exclude = ["tests", "docs"] -[tool.ruff.per-file-ignores] +[tool.ruff.lint.per-file-ignores] "quinn/extensions/column_ext.py" = ["FBT003", "N802"] "quinn/extensions/__init__.py" = ["F401", "F403"] "quinn/__init__.py" = ["F401", "F403"] diff --git a/quinn/append_if_schema_identical.py b/quinn/append_if_schema_identical.py index 6c4e879b..ac05f1ee 100644 --- a/quinn/append_if_schema_identical.py +++ b/quinn/append_if_schema_identical.py @@ -36,9 +36,7 @@ def append_if_schema_identical(source_df: DataFrame, target_df: DataFrame) -> Da source_schema_list = [(field.name, str(field.dataType)) for field in source_schema] target_schema_list = [(field.name, str(field.dataType)) for field in target_schema] - unmatched_cols = [ - col for col in source_schema_list if col not in target_schema_list - ] + unmatched_cols = [col for col in source_schema_list if col not in target_schema_list] error_message = ( f"The schemas of the source and target dataframes are not identical." f"From source schema column {unmatched_cols} is missing in target schema" diff --git a/quinn/dataframe_helpers.py b/quinn/dataframe_helpers.py index c69af269..03634f6a 100644 --- a/quinn/dataframe_helpers.py +++ b/quinn/dataframe_helpers.py @@ -45,10 +45,10 @@ def column_to_list(df: DataFrame, col_name: str) -> list[Any]: return [row[0] for row in df.select(col_name).collect()] pyarrow_enabled = ( - spark_session.conf.get( - "spark.sql.execution.arrow.pyspark.enabled", - ) - == "true" + spark_session.conf.get( + "spark.sql.execution.arrow.pyspark.enabled", + ) + == "true" ) pyarrow_valid = pyarrow_enabled and sys.modules["pyarrow"].__version__ >= "0.17.0" @@ -63,9 +63,9 @@ def column_to_list(df: DataFrame, col_name: str) -> list[Any]: def two_columns_to_dictionary( - df: DataFrame, - key_col_name: str, - value_col_name: str, + df: DataFrame, + key_col_name: str, + value_col_name: str, ) -> dict[str, Any]: """Collect two columns as dictionary when first column is key and second is value. diff --git a/quinn/keyword_finder.py b/quinn/keyword_finder.py index c3facc9a..be584ab1 100644 --- a/quinn/keyword_finder.py +++ b/quinn/keyword_finder.py @@ -54,6 +54,7 @@ "sparkContext", ] + @dataclass class SearchResult: """Class to hold the results of a file search. diff --git a/quinn/math.py b/quinn/math.py index 3ba9e54a..e385b1ff 100644 --- a/quinn/math.py +++ b/quinn/math.py @@ -12,6 +12,7 @@ # limitations under the License. """Math routines for PySpark.""" + from __future__ import annotations from typing import Optional, Union @@ -40,11 +41,7 @@ def rand_laplace( u = F.rand(seed) - return ( - F.when(u < F.lit(0.5), mu + beta * F.log(2 * u)) - .otherwise(mu - beta * F.log(2 * (1 - u))) - .alias("laplace_random") - ) + return F.when(u < F.lit(0.5), mu + beta * F.log(2 * u)).otherwise(mu - beta * F.log(2 * (1 - u))).alias("laplace_random") def div_or_else( diff --git a/quinn/schema_helpers.py b/quinn/schema_helpers.py index b86082ea..8fd18b1a 100644 --- a/quinn/schema_helpers.py +++ b/quinn/schema_helpers.py @@ -159,8 +159,8 @@ def _convert_nullable(null_str: str) -> bool: field = T.StructField( name=row["name"], dataType=_lookup_type(row["type"]), - nullable=_convert_nullable(row["nullable"]) if "nullable" in row else True, - metadata=_validate_json(row["metadata"] if "metadata" in row else None), + nullable=_convert_nullable(row.get("nullable", True)), + metadata=_validate_json(row.get("metadata", None)), ) fields.append(field) @@ -175,8 +175,4 @@ def complex_fields(schema: T.StructType) -> dict[str, object]: :return: A dictionary with complex field names as keys and their respective data types as values. :rtype: Dict[str, object] """ - return { - field.name: field.dataType - for field in schema.fields - if isinstance(field.dataType, (T.ArrayType, T.StructType, T.MapType)) - } + return {field.name: field.dataType for field in schema.fields if isinstance(field.dataType, (T.ArrayType, T.StructType, T.MapType))} diff --git a/quinn/split_columns.py b/quinn/split_columns.py index 178a69da..e2bdef87 100644 --- a/quinn/split_columns.py +++ b/quinn/split_columns.py @@ -117,17 +117,15 @@ def _num_delimiter(col_value1: str) -> int: df = df.withColumn("del_length", num_udf(df[col_name])) # noqa: PD901 df.cache() # Drop the original column if the new columns were created successfully - df = df.select( # noqa: PD901 + df = df.select( # noqa: PD901 [c for c in df.columns if c not in {"del_length", col_name}], ) elif mode == "permissive": # Create an array of select expressions to create new columns from the split values # Use the default value if a split value is missing or empty - select_exprs = select_exprs = [ - when(length(split_col_expr.getItem(i)) > 0, split_col_expr.getItem(i)) - .otherwise(default) - .alias(new_col_names[i]) + select_exprs = [ + when(length(split_col_expr.getItem(i)) > 0, split_col_expr.getItem(i)).otherwise(default).alias(new_col_names[i]) for i in range(len(new_col_names)) ] diff --git a/quinn/transformations.py b/quinn/transformations.py index c9870ba9..0acd4608 100644 --- a/quinn/transformations.py +++ b/quinn/transformations.py @@ -64,12 +64,7 @@ def with_some_columns_renamed( """ def _(df: DataFrame) -> DataFrame: - cols = [ - F.col(f"`{col_name}`").alias(fun(col_name)) - if change_col_name(col_name) - else F.col(f"`{col_name}`") - for col_name in df.columns - ] + cols = [F.col(f"`{col_name}`").alias(fun(col_name)) if change_col_name(col_name) else F.col(f"`{col_name}`") for col_name in df.columns] return df.select(*cols) return _ @@ -120,7 +115,9 @@ def sort_columns( # noqa: C901,PLR0915 """ def sort_nested_cols( - schema: StructType, is_reversed: bool, base_field: str="", + schema: StructType, + is_reversed: bool, + base_field: str = "", ) -> list[str]: # recursively check nested fields and sort them # https://stackoverflow.com/questions/57821538/how-to-sort-columns-of-nested-structs-alphabetically-in-pyspark @@ -146,7 +143,9 @@ def parse_fields( results.extend( sort_nested_cols( - new_struct, is_reversed, base_field=new_base_field, + new_struct, + is_reversed, + base_field=new_base_field, ), ) return results @@ -242,10 +241,7 @@ def fix_nullability(field: StructField, result_dict: dict) -> None: if not sort_nested: return top_level_sorted_df - is_nested: bool = any( - isinstance(i.dataType, (StructType, ArrayType)) - for i in top_level_sorted_df.schema - ) + is_nested: bool = any(isinstance(i.dataType, (StructType, ArrayType)) for i in top_level_sorted_df.schema) if not is_nested: return top_level_sorted_df @@ -281,10 +277,7 @@ def flatten_struct(df: DataFrame, col_name: str, separator: str = ":") -> DataFr :rtype: List[Column] """ struct_type = complex_fields(df.schema)[col_name] - expanded = [ - F.col(f"`{col_name}`.`{k}`").alias(col_name + separator + k) - for k in [n.name for n in struct_type.fields] - ] + expanded = [F.col(f"`{col_name}`.`{k}`").alias(col_name + separator + k) for k in [n.name for n in struct_type.fields]] return df.select("*", *expanded).drop(F.col(f"`{col_name}`")) @@ -302,9 +295,7 @@ def flatten_map(df: DataFrame, col_name: str, separator: str = ":") -> DataFrame """ keys_df = df.select(F.explode_outer(F.map_keys(F.col(f"`{col_name}`")))).distinct() keys = [row[0] for row in keys_df.collect()] - key_cols = [ - F.col(f"`{col_name}`").getItem(k).alias(col_name + separator + k) for k in keys - ] + key_cols = [F.col(f"`{col_name}`").getItem(k).alias(col_name + separator + k) for k in keys] return df.select( [F.col(f"`{col}`") for col in df.columns if col != col_name] + key_cols, ) @@ -407,9 +398,7 @@ def explode_array(df: DataFrame, col_name: str) -> DataFrame: # Sanitize column names with the specified replace_char if sanitized_columns: - sanitized_columns = [ - sanitize_column_name(col_name, replace_char) for col_name in df.columns - ] + sanitized_columns = [sanitize_column_name(col_name, replace_char) for col_name in df.columns] df = df.toDF(*sanitized_columns) # noqa: PD901 return df From af30f319babcdddcae2951deb99c3ff3f036ee59 Mon Sep 17 00:00:00 2001 From: semyonsinchenko Date: Sun, 14 Jul 2024 11:47:01 +0200 Subject: [PATCH 2/5] Update linting CI --- .github/workflows/lint.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/lint.yaml b/.github/workflows/lint.yaml index c6dafa5f..fff83244 100644 --- a/.github/workflows/lint.yaml +++ b/.github/workflows/lint.yaml @@ -9,8 +9,8 @@ jobs: - uses: actions/checkout@v3 - uses: actions/setup-python@v4 with: - python-version: 3.9 + python-version: 3.10 - name: Run Ruff uses: chartboost/ruff-action@v1 with: - version: 0.0.291 + version: 0.5.1 From 12f083a1b0504639532a293967944277a36b57a7 Mon Sep 17 00:00:00 2001 From: semyonsinchenko Date: Sun, 14 Jul 2024 11:47:49 +0200 Subject: [PATCH 3/5] Fix typo in CI --- .github/workflows/lint.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/lint.yaml b/.github/workflows/lint.yaml index fff83244..ff5aa621 100644 --- a/.github/workflows/lint.yaml +++ b/.github/workflows/lint.yaml @@ -9,7 +9,7 @@ jobs: - uses: actions/checkout@v3 - uses: actions/setup-python@v4 with: - python-version: 3.10 + python-version: '3.10' - name: Run Ruff uses: chartboost/ruff-action@v1 with: From b20cdb1947d86f95cd98fc41d14f39e57eab0637 Mon Sep 17 00:00:00 2001 From: semyonsinchenko Date: Sun, 14 Jul 2024 12:11:58 +0200 Subject: [PATCH 4/5] Fix failed tests --- quinn/schema_helpers.py | 12 ++++++++---- 1 file changed, 8 insertions(+), 4 deletions(-) diff --git a/quinn/schema_helpers.py b/quinn/schema_helpers.py index 8fd18b1a..d314ff1b 100644 --- a/quinn/schema_helpers.py +++ b/quinn/schema_helpers.py @@ -132,7 +132,7 @@ def _lookup_type(type_str: str) -> T.DataType: return type_lookup[type_str] - def _convert_nullable(null_str: str) -> bool: + def _convert_nullable(null_str: Optional[str]) -> bool: if null_str is None: return True @@ -159,8 +159,8 @@ def _convert_nullable(null_str: str) -> bool: field = T.StructField( name=row["name"], dataType=_lookup_type(row["type"]), - nullable=_convert_nullable(row.get("nullable", True)), - metadata=_validate_json(row.get("metadata", None)), + nullable=_convert_nullable(row["nullable"]) if "nullable" in row else True, + metadata=_validate_json(row["metadata"] if "metadata" in row else None), # noqa: SIM401 ) fields.append(field) @@ -175,4 +175,8 @@ def complex_fields(schema: T.StructType) -> dict[str, object]: :return: A dictionary with complex field names as keys and their respective data types as values. :rtype: Dict[str, object] """ - return {field.name: field.dataType for field in schema.fields if isinstance(field.dataType, (T.ArrayType, T.StructType, T.MapType))} + return { + field.name: field.dataType + for field in schema.fields + if isinstance(field.dataType, (T.ArrayType, T.StructType, T.MapType)) + } From c92c3810022ea67e70baf754217f43ec9f2d7d94 Mon Sep 17 00:00:00 2001 From: semyonsinchenko Date: Sun, 14 Jul 2024 16:57:59 +0200 Subject: [PATCH 5/5] Updates from review --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index b20c0726..55f79750 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "quinn" -version = "1.0" +version = "1.0.0" description = "Pyspark helper methods to maximize developer efficiency" authors = ["MrPowers "]