Releases: moshi4/pyGenomeViz
Releases · moshi4/pyGenomeViz
v1.4.1
Change Log
Fixed
- Set encoding="utf-8" explicitly to avoid Windows default encoding issue (#63)
- Fixed incorrect gz compressed file extension check logic (#64)
v1.4.0
Change Log
Added
- Added extra_tooltip argument to
add_feature() method explicitly (#61)
- Added
get_seqid2record() method to Fasta parser class
Changed
- Dropped python3.8 support
Fixed
- Fixed to skip mmseqs search for no cds genome (#58)
- Fixed
get_seqid2seq() method incorrect return type
v1.3.0
Change Log
New Functionality
- Added theme option (
light[default] or dark)
- Added Fasta parser class
- Added
load_example_fasta_dataset() utility function
- Added
to_stack_features() helper function to avoid feature overlap
Bug Fix
- Fixed to ignore features that have no location (#54)
v1.2.1
Change Log
Bug Fix
- Fixed a bug that the dependent libraries for HTML viewer were not packaged correctly
v1.2.0
Change Log
New Functionality
- Added Features Table to HTML viewer experimentally (Demo Page)
- Added unit argument to
gv.set_scale_xticks() to enable choose Gb, Mb, Kb, bp unit
- Added target_strand & target_range argument to
gff.extract_exon_features()
Improvement
- Improved HTML viewer code & UI design
- Fixed to raise error in
gv.savefig_html() for invalid figure
- Switched package manager
poetry to rye
v1.1.0
Change Log
Improvement
- Added reverse complement option to GUI
Bug Fix
- Fixed unexpected
sys.exit when calling aligner tool
v0.4.4
Change Log
Improvement
- Added
track.add_features() method
Bug Fix
- Fixed a bug that caused an error in the GUI when uploaded files contain parentheses
().
v0.4.3
Change Log
Bug Fix
- Fixed bug due to matplotlib v3.8.0 changes (#22)
- Fixed
savefig() to suppress memory leak during multiple plots
v0.4.2
Change Log
Improvement
- Added resource warning message for streamlit cloud deployment
Bug Fix
- Fixed gui run error when upload filename contains space char
- Fixed mmseqs run error when protein_id contains
| char
- Fixed a bug that
gff.get_seqid2size() got incorrect multi-contig size
v0.4.1...v0.4.2
