Bump to v1.4.0

.github/workflows/ci.yml

@@ -14,7 +14,7 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest, macos-latest]
-        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
     steps:
       - name: Checkout
         uses: actions/checkout@v4

.github/workflows/publish_mkdocs.yml

@@ -12,17 +12,12 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v4
 
-      - name: Setup Python 3.11
-        uses: actions/setup-python@v5
-        with:
-          python-version: "3.11"
-
       - name: Install Rye
         run: |
           curl -sSf https://rye.astral.sh/get | RYE_INSTALL_OPTION="--yes" bash
           echo "$HOME/.rye/shims" >> $GITHUB_PATH
 
-      - name: Install MkDocs & Plugins
+      - name: Install Python & MkDocs & Plugins
         run: rye sync
 
       - name: Publish document

.github/workflows/publish_to_pypi.yml

@@ -15,11 +15,6 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v4
 
-      - name: Setup Python 3.11
-        uses: actions/setup-python@v5
-        with:
-          python-version: "3.11"
-
       - name: Install Rye
         run: |
           curl -sSf https://rye.astral.sh/get | RYE_INSTALL_OPTION="--yes" bash

.pre-commit-config.yaml

@@ -2,7 +2,7 @@
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.5.6
+    rev: v0.6.5
     hooks:
       - id: ruff
         name: ruff lint check

README.md

@@ -44,7 +44,7 @@ For more information, please see full documentation [here](https://moshi4.github
 
 ## Installation
 
-`Python 3.8 or later` is required for installation.
+`Python 3.9 or later` is required for installation.
 
 **Install PyPI package:**
 

docs/index.md

@@ -43,7 +43,7 @@ or automatic genome visualization figure plotting in genome analysis scripts/pip
 
 ## Installation
 
-`Python 3.8 or later` is required for installation.
+`Python 3.9 or later` is required for installation.
 
 **Install PyPI package:**
 

pyproject.toml

@@ -17,7 +17,7 @@ classifiers = [
     "Topic :: Scientific/Engineering :: Bio-Informatics",
     "Framework :: Matplotlib",
 ]
-requires-python = ">=3.8"
+requires-python = ">=3.9"
 dependencies = ["matplotlib>=3.6.3", "biopython>=1.80", "numpy>=1.21"]
 
 [project.optional-dependencies]
@@ -60,7 +60,7 @@ addopts = "--cov=src --tb=long -vv --cov-report=xml --cov-report=term"
 testpaths = ["tests"]
 
 [tool.ruff]
-src = ["src", "tests"]
+include = ["src/**.py", "tests/**.py"]
 line-length = 88
 
 # Lint Rules: https://docs.astral.sh/ruff/rules/