Bump to v1.2.0 #97
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| name: CI | |
| on: | |
| push: | |
| branches: [main, develop] | |
| paths: ["src/**", "tests/**", ".github/workflows/ci.yml"] | |
| pull_request: | |
| branches: [main, develop] | |
| paths: ["src/**", "tests/**", ".github/workflows/ci.yml"] | |
| workflow_dispatch: | |
| jobs: | |
| CI: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| # - name: Setup Python ${{ matrix.python-version}} | |
| # uses: actions/setup-python@v5 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| - name: Install Rye | |
| run: | | |
| curl -sSf https://rye.astral.sh/get | RYE_INSTALL_OPTION="--yes" bash | |
| echo "$HOME/.rye/shims" >> $GITHUB_PATH | |
| - name: Install python dependencies | |
| run: | | |
| rye pin ${{ matrix.python-version }} | |
| rye sync --update-all --all-features | |
| - name: Install external tool dependencies | |
| run: | | |
| sudo apt update -y | |
| sudo apt install -y ncbi-blast+ mmseqs2 mummer progressivemauve | |
| if: ${{ matrix.os=='ubuntu-latest' }} | |
| - name: Run ruff lint check | |
| run: rye run ruff check --diff | |
| - name: Run ruff format check | |
| run: rye run ruff format --check --diff | |
| - name: Run pytest | |
| run: rye run pytest |