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"^1.24.9" +scipy = [ + {version = "^1.13.0", python = "<3.13"}, + {version = "^1.14.1", python = ">=3.13"} +] +numpy = [ + {version = ">=1.23,<2.1", python = "<3.13"}, + {version = ">=2.0.0", python = ">=3.13"} +] [tool.poetry.dev-dependencies] pytest = ">=7.1.2" diff --git a/src/ontogpt/ontex/extractor.py b/src/ontogpt/ontex/extractor.py index b73ca4bbf..2b16e915a 100644 --- a/src/ontogpt/ontex/extractor.py +++ b/src/ontogpt/ontex/extractor.py @@ -807,7 +807,8 @@ class MostRecentCommonSubsumerTask(Task): text="E", explanations=[ Explanation( - text="""E is the most specific common entailed superclass of E2 and E because + text="""E is the most specific common + entailed superclass of E2 and E because trivially E2 SubClassOf E""", axioms=[ Axiom(text="E2 SubClassOf E"), diff --git a/tox.ini b/tox.ini index e1a17f957..cc10fde16 100644 --- a/tox.ini +++ b/tox.ini @@ -53,7 +53,7 @@ description = Run documentation linters. skip_install = true deps = darglint - flake8<5.0.0 + flake8 flake8-black flake8-bandit flake8-bugbear @@ -75,36 +75,53 @@ exclude = templates max-line-length = 100 ignore = - DAR101 # Missing parameter(s) in Docstring: - with_git_hash - DAR201 # Missing "Returns" in Docstring: - return - DAR301 # Missing "Yields" in Docstring: - yield - DAR401 # Missing exception(s) in Raises section: -r ValueError - E111 # indentation is not a multiple of 4 - E203 # whitespace before ':' - T201 # print found. - W503 # line break before binary operator - D412 # No blank lines allowed between a section header and its content - S301 # Pickle and modules that wrap it can be unsafe when used to deserialize - # untrusted data, possible security issue. - S403 # Consider possible security implications associated with pickle module. - #* NEEDS FIXING ASAP ************ - B001 # Do not use bare `except:` - B008 # Do not perform function calls in argument defaults. + # Missing parameter(s) in Docstring: - with_git_hash + DAR101 + # Missing "Returns" in Docstring: - return + DAR201 + # Missing "Yields" in Docstring: - yield + DAR301 + # Missing exception(s) in Raises section: -r ValueError + DAR401 + # indentation is not a multiple of 4 + E111 + # whitespace before ':' + E203 + E721 + # print found. + T201 + # line break before binary operator + W503 + # No blank lines allowed between a section header and its content + D412 + # Pickle and modules that wrap it can be unsafe when used to deserialize + # untrusted data, possible security issue. + S301 + # Consider possible security implications associated with pickle module. + S403 + # Do not use bare `except:` + B001 + # Do not perform function calls in argument defaults. + B008 + B024 D101 D102 D103 D104 D105 - D202 # No blank lines allowed after function docstring - E722 # do not use bare 'except' + # No blank lines allowed after function docstring + D202 + # do not use bare 'except' + E722 F841 F821 - S101 # Use of assert detected. The enclosed code will be removed when compiling to optimised byte code. - S113 # Requests call without timeout - S110 # Try, Except, Pass detected. + # Use of assert detected. The enclosed code will be removed when compiling to optimised byte code. + S101 + # Requests call without timeout + S113 + # Try, Except, Pass detected. + S110 S311 - - [testenv:mypy] deps = mypy