From ca56037821ea7a033c001e5e6162dee26ee2b0f1 Mon Sep 17 00:00:00 2001
From: Nassim Oufattole <noufattole@gmail.com>
Date: Thu, 24 Oct 2024 19:55:03 +0000
Subject: [PATCH] reverted unnecessary changes to run.sh call and MEDS conda
 environement name

---
 MIMIC-IV_Example/README.md | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/MIMIC-IV_Example/README.md b/MIMIC-IV_Example/README.md
index ee51dcf..465c56a 100644
--- a/MIMIC-IV_Example/README.md
+++ b/MIMIC-IV_Example/README.md
@@ -7,8 +7,8 @@ up from this one).
 ## Step 0: Installation
 
 ```bash
-conda create -n meds-transform python=3.12
-conda activate meds-transform
+conda create -n MEDS python=3.12
+conda activate MEDS
 # Get the latest version of MEDS_transforms from pypi
 LATEST_VERSION=$(pip index versions "meds-transforms" 2>/dev/null | egrep -o '([0-9]+\.){2}[0-9]+' | head -n 1)
 export VERSION=$LATEST_VERSION # or whatever version you want, at the time of writing this is "0.0.8"
@@ -79,7 +79,7 @@ additional argument
 
 ```bash
 export N_WORKERS=5
-./run.sh $MIMICIV_RAW_DIR $MIMICIV_PRE_MEDS_DIR $MIMICIV_MEDS_DIR do_unzip=false \
+./run.sh $MIMICIV_RAW_DIR $MIMICIV_PRE_MEDS_DIR $MIMICIV_MEDS_DIR do_unzip=true \
     stage_runner_fp=slurm_runner.yaml
 ```