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I have a recurring problem with btlapply, whichever code I use inside. I'm not sure if it's a bug in batchtools, a problem in the way I use it or an error in my Slurm configuration.
I have 16 nodes, each with 40 CPUs. Whatever I submit using btlapply, it never uses more than 1 or 2 nodes. And even the second node is used half. sinfo reports all the other nodes in idle state. srun -N 16 hostname will correctly print the hostname of each node, meaning I can send jobs to all the nodes.
Any idea or suggestions on how to fix this problem or where to look at?
The text was updated successfully, but these errors were encountered:
Hi,
I have a recurring problem with
btlapply
, whichever code I use inside. I'm not sure if it's a bug in batchtools, a problem in the way I use it or an error in my Slurm configuration.I have 16 nodes, each with 40 CPUs. Whatever I submit using
btlapply
, it never uses more than 1 or 2 nodes. And even the second node is used half.sinfo
reports all the other nodes inidle
state.srun -N 16 hostname
will correctly print the hostname of each node, meaning I can send jobs to all the nodes.Any idea or suggestions on how to fix this problem or where to look at?
The text was updated successfully, but these errors were encountered: