FloPy example script & notebook tests #313
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| name: FloPy example script & notebook tests | |
| on: | |
| schedule: | |
| - cron: '0 8 * * *' # run at 8 AM UTC (12 am PST) | |
| jobs: | |
| examples: | |
| name: Example scripts & notebooks | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, macos-latest, windows-latest ] | |
| python-version: [ 3.8, 3.9, "3.10", "3.11" ] | |
| exclude: | |
| # avoid shutil.copytree infinite recursion bug | |
| # https://github.com/python/cpython/pull/17098 | |
| - python-version: '3.8.0' | |
| defaults: | |
| run: | |
| shell: bash | |
| timeout-minutes: 90 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| if: runner.os != 'Windows' | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| cache-dependency-path: pyproject.toml | |
| - name: Install Python dependencies | |
| if: runner.os != 'Windows' | |
| run: | | |
| pip install --upgrade pip | |
| pip install . | |
| pip install ".[test, optional]" | |
| - name: Setup Micromamba | |
| if: runner.os == 'Windows' | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: etc/environment.yml | |
| cache-environment: true | |
| cache-downloads: true | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| init-shell: >- | |
| bash | |
| powershell | |
| - name: Install extra Python dependencies | |
| if: runner.os == 'Windows' | |
| shell: bash -l {0} | |
| run: | | |
| pip install xmipy | |
| pip install . | |
| - name: Workaround OpenGL issue on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| # referenced from https://github.com/pyvista/pyvista/blob/main/.github/workflows/vtk-pre-test.yml#L53 | |
| pip uninstall -y vtk | |
| pip install --extra-index-url https://wheels.vtk.org trame vtk-osmesa | |
| - name: Install OpenGL on Windows | |
| if: runner.os == 'Windows' | |
| shell: pwsh | |
| run: | | |
| Set-StrictMode -Version Latest | |
| $ErrorActionPreference = "Stop" | |
| $PSDefaultParameterValues['*:ErrorAction']='Stop' | |
| powershell .github/install_opengl.ps1 | |
| - name: Install Modflow-related executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Install Modflow dev build executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| repo: modflow6-nightly-build | |
| - name: Update FloPy packages | |
| if: runner.os != 'Windows' | |
| run: python -c 'import flopy; flopy.mf6.utils.generate_classes(branch="develop", backup=False)' | |
| - name: Update FloPy packages | |
| if: runner.os == 'Windows' | |
| shell: bash -l {0} | |
| run: python -c 'import flopy; flopy.mf6.utils.generate_classes(branch="develop", backup=False)' | |
| - name: Run example tests | |
| if: runner.os != 'Windows' | |
| working-directory: ./autotest | |
| run: | | |
| pytest -v -m="example" -n=auto -s --durations=0 --keep-failed=.failed | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Run example tests | |
| if: runner.os == 'Windows' | |
| shell: bash -l {0} | |
| working-directory: ./autotest | |
| run: | | |
| pytest -v -m="example" -n=auto -s --durations=0 --keep-failed=.failed | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload failed test outputs | |
| uses: actions/upload-artifact@v3 | |
| if: failure() | |
| with: | |
| name: failed-example-${{ matrix.os }}-${{ matrix.python-version }} | |
| path: | | |
| ./autotest/.failed/** |