diff --git a/docs/examples/multislice.ipynb b/docs/examples/multislice.ipynb index fb85a311..719d0d01 100644 --- a/docs/examples/multislice.ipynb +++ b/docs/examples/multislice.ipynb @@ -9,7 +9,7 @@ }, { "cell_type": "code", - "execution_count": 1, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -20,8 +20,10 @@ "from cryojax.io import read_atoms_from_pdb\n", "\n", "\n", - "atom_positions, atom_identities = read_atoms_from_pdb(\"./data/5w0s.pdb\")\n", - "atom_potential = cxs.PengAtomicPotential(atom_positions, atom_identities)" + "atom_positions, atom_identities, b_factors = read_atoms_from_pdb(\n", + " \"./data/5w0s.pdb\", get_b_factors=True\n", + ")\n", + "atom_potential = cxs.PengAtomicPotential(atom_positions, atom_identities, b_factors)" ] }, {