update_dependencies.yaml

name: Update R packages

on: workflow_dispatch

jobs:
  renv:
    runs-on: ubuntu-latest
    container:
      image: ghcr.io/${{ github.repository_owner }}/repo_rt_preprocessing:latest
      env:
        RENV_PATHS_LIBRARY: '/renv/library'
    defaults:
      run:
        shell: bash

    steps:
    - name: Checkout
      uses: actions/checkout@v3

    - name: Init renv
      shell: Rscript {0}
      run: |
        renv::restore()

    - name: Install R dependencies
      run: Rscript scripts/R_ci/dependencies.R

    - name: Snapshot renv
      shell: Rscript {0}
      run: |
        renv::snapshot()

    - name: Commit
      run: |
        git config --global user.email 'actions@github.com'
        git config --global user.name 'Github Actions'
        # Use LFS storage of main repository: no push access to fork LFS storage
        git add renv.lock renv .Rprofile
        git commit -m "Update renv"
        git lfs push origin HEAD # first push LFS, otherwise failure because of lfs.url
        git push origin HEAD

    - name: Debug with tmate on failure
      if: ${{ failure() }}
      uses: mxschmitt/action-tmate@v3