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@methylgrammarlab

methylgrammarlab

The Methyl Grammar lab

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  1. cfdna-ont cfdna-ont Public

    R 3

  2. deconvolution_models deconvolution_models Public

    EM-based deconvolution models

    Python 3 2

  3. pmd_hypometh_classifier pmd_hypometh_classifier Public

    Code to process training datasets and train NN models for PMD hypomethylation classification

    Jupyter Notebook 2 1

  4. epiread-tools epiread-tools Public

    Python 1

  5. nf-co.re nf-co.re Public

    Forked from nf-core/website

    Code and files for the main nf-core website >>>

    PHP

  6. Fragmentomics_GenomBiol Fragmentomics_GenomBiol Public

    Forked from Puputnik/Fragmentomics_GenomBiol

    Pipeline to replicate Katsman et. al fragmentomics results

    R

Repositories

Showing 10 of 11 repositories
  • epiread-tools Public
    methylgrammarlab/epiread-tools’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 26, 2024
  • deconvolution_models Public

    EM-based deconvolution models

    methylgrammarlab/deconvolution_models’s past year of commit activity
    Python 3 MIT 2 4 0 Updated Nov 18, 2024
  • bimodal_detector Public

    detect bimodal regions in methylation sequencing

    methylgrammarlab/bimodal_detector’s past year of commit activity
    Python 0 MIT 1 1 0 Updated Feb 29, 2024
  • deconvolution_in_silico_pipeline Public
    methylgrammarlab/deconvolution_in_silico_pipeline’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 19, 2023
  • deconvolution_simulation_pipeline Public
    methylgrammarlab/deconvolution_simulation_pipeline’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 12, 2023
  • cfdna-ont Public
    methylgrammarlab/cfdna-ont’s past year of commit activity
    R 3 MIT 0 2 0 Updated Mar 28, 2023
  • pmd_hypometh_classifier Public

    Code to process training datasets and train NN models for PMD hypomethylation classification

    methylgrammarlab/pmd_hypometh_classifier’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 0 Updated Sep 14, 2022
  • NN_hypomethylation_hammerseq Public

    Scripts to process hammerseq data for validation of neural network sequence model of global hypomethylation

    methylgrammarlab/NN_hypomethylation_hammerseq’s past year of commit activity
    MATLAB 0 MIT 0 0 0 Updated Aug 15, 2022
  • Fragmentomics_GenomBiol Public Forked from Puputnik/Fragmentomics_GenomBiol

    Pipeline to replicate Katsman et. al fragmentomics results

    methylgrammarlab/Fragmentomics_GenomBiol’s past year of commit activity
    R 0 MIT 2 0 0 Updated Jun 13, 2022
  • CNV_Methylation_Genome_Biol_2022 Public Forked from Puputnik/CNV_Methylation_Genome_Biol_2022
    methylgrammarlab/CNV_Methylation_Genome_Biol_2022’s past year of commit activity
    R 0 MIT 1 0 0 Updated Jun 13, 2022
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