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Hello - I've just downloaded the tool and am getting started. Tried a test run but ran into the error below. Adding -k 16 -s 5000 did not solve the issue:
python BiG-MAP/src/BiG-MAP.family.py -p 8 -D bgcs -O test
_Extracting fasta files
Traceback (most recent call last):
File "BiG-MAP/src/BiG-MAP.family.py", line 1219, in
main()
File "BiG-MAP/src/BiG-MAP.family.py", line 1061, in main
make_sketch(args.outdir + os.sep)
TypeError: make_sketch() missing 2 required positional arguments: 'kmer' and 'sketch'
The text was updated successfully, but these errors were encountered:
Running into several other issues now. For example on ~ line 197: absolute_loc_start = record.annotations["structured_comment"]["antiSMASH-Data"]["Orig. start"]
However, the "Orig. start" key is not in record.annotations["structured_comment"]["antiSMASH-Data"] for my genbank files. It might be helpful is there were a small test dataset that could be quickly run
BiG-MAP.family takes output produced by antiSMASH/gutSMASH as input. Did you run one of these tools on your genbank files before using them as input for BiG-MAP?
Hello - I've just downloaded the tool and am getting started. Tried a test run but ran into the error below. Adding
-k 16 -s 5000
did not solve the issue:python BiG-MAP/src/BiG-MAP.family.py -p 8 -D bgcs -O test
The text was updated successfully, but these errors were encountered: