diff --git a/README.rst b/README.rst index 09bb59c..ad6f68b 100644 --- a/README.rst +++ b/README.rst @@ -300,6 +300,22 @@ analysis structure with its inputs, code, runtime environment, computational workflow steps and expected outputs. In this example we are using the Snakemake workflow specification, which you can find in the `workflow `_ directory. +.. code-block:: yaml + + version: 0.8.0 + inputs: + parameters: + input: workflow/input.yaml + directories: + - code + - data + - workflow + outputs: + files: + - results/mass4l_combine_userlvl3.pdf + workflow: + type: snakemake + file: workflow/Snakefile We can now install the REANA command-line client, run the analysis and download the resulting plots: @@ -321,10 +337,11 @@ the resulting plots: $ reana-client upload $ # start computational workflow $ reana-client start - $ # ... should be finished in a couple (~5) of minutes + $ # ... should be finished in a couple of minutes + $ # check its status $ reana-client status $ # list workspace files - $ reana-client list + $ reana-client ls $ # download output results $ reana-client download