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querystatus.py
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querystatus.py
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#!@WHICHPYTHON@
"""
CGI Module for checking on the status of an OPAL job
"""
__date__ = "4 January 2010"
__author__ = "Wes Goodman, Samir Unni, Yong Huang"
import sys
import cgi
import cgitb
import os,shutil,glob,string,time,urllib
from src.server import *
from src.aconf import *
from src.utilities import getTrackingScriptString, getEventTrackingString
cgitb.enable()
form = cgi.FieldStorage()
def printheader(pagetitle,refresh=None,jobid=None):
str = ""
str+= "<html>\n"
str+= "<HEAD>\n"
if refresh:
str+= "\t<META HTTP-EQUIV=\"Refresh\" CONTENT=\"%s\">\n" % refresh
str+= "\t<TITLE>%s</TITLE>\n" % pagetitle
str+= "\t<link rel=\"stylesheet\" href=\"%s\" type=\"text/css\">\n" % STYLESHEET
str+= getTrackingScriptString(jobid)
str+= "</HEAD>\n"
return str
#def getloads():
# """
# get the system load information for output and logging
#
# returns
# loads: a three entry list containing the 1, 5, and
# 15 minute loads. if the load file is not found,
# return none.
# """
# if loadpath == "": return none
# try:
# file = open(loadpath, 'ru')
# except ioerror:
# return none
#
# line = file.readline()
# words = string.split(line)
# loads = words[:3]
#
# return loads
#def cleantmpdir():
# """
# clean up the temp directory for cgi. if the size of the directory
# is greater than limit, delete the older half of the files. since
# the files are stored by system time of creation, this is an
# easier task.
# """
# newdir = []
# size = 0.0
# count = 0
# path = INSTALLDIR + tmpdir
#
# dir = os.listdir(path)
# for filename in dir:
# size = size + os.path.getsize("%s%s" % (path, filename))
# period = string.find(filename,".")
# id = filename[:period]
# if id not in newdir:
# newdir.append(id)
# count += 1
#
# newdir.sort()
# size = size / (1024.0 * 1024.0)
#
# newcount = 0
# if size >= limit:
# for filename in newdir:
# if newcount > count/2.0: break
# try:
# os.remove("%s%s.pqr" % (path, filename))
# except oserror: pass
# try:
# os.remove("%s%s.in" % (path, filename))
# except oserror: pass
# try:
# os.remove("%s%s.html" % (path, filename))
# except oserror: pass
# newcount += 1
#
#def getquote(path):
# """
# get a quote to display for the refresh page.
# uses fortune to generate a quote.
#
# parameters:
# path: the path to the fortune script (str)
# returns:
# quote: the quote to display (str)
# """
# fortune = os.popen(path)
# quote = fortune.read()
# quote = string.replace(quote, "\n", "<br>")
# quote = string.replace(quote, "\t", " "*5)
# quote = "%s<p>" % quote
# return quote
#
#def printprogress(name, refreshname, reftime, starttime):
# """
# print the progress of the server
#
# parameters
# name: the id of the html page to write to (string)
# refreshname: the name of the html page to refresh to (string)
# reftime: the length of time to set the refresh wait to (int)
# starttime: the time as returned by time.time() that the run started (float)
# """
# elapsedtime = time.time() - starttime + refreshtime/2.0 # add in time offset
# filename = "%s%s%s/%s-tmp.html" % (INSTALLDIR, tmpdir, jobid, name)
# file = open(filename,"w")
# file.write("<html>\n")
# file.write("<head>\n")
# file.write("<title>pdb2pqr progress</title>\n")
# file.write("<link rel=\"stylesheet\" href=\"%s\" type=\"text/css\">\n" % stylesheet)
# file.write("<meta http-equiv=\"refresh\" content=\"%s; url=%s\">\n" % \
# (reftime, refreshname))
# file.write("</head>\n")
# file.write("<body>\n")
# file.write("<h2>pdb2pqr progress</h2><p>\n")
# file.write("the pdb2pqr server is generating your results - this page will automatically \n")
# file.write("refresh every %s seconds.<p>\n" % refreshtime)
# file.write("thank you for your patience!<p>\n")
# file.write("server progress:<p>\n")
# file.write("<blockquote>\n")
# file.write("<font size=2>elapsed time:</font> <code>%.2f seconds</code><br>\n" % elapsedtime)
# file.write("</blockquote>\n")
# file.write("server information:<p>\n")
# file.write("<blockquote>\n")
# loads = getloads()
# if loads != none:
# file.write("<font size=2>server load:</font> <code>%s (1min) %s (5min) %s (15min)</code><br>\n" % (loads[0], loads[1], loads[2]))
#
# file.write("<font size=2>server time:</font> <code>%s</code><br>\n" % (time.asctime(time.localtime())))
# file.write("</blockquote>\n")
# file.write("<script type=\"text/javascript\">")
# file.write("var gaJsHost = ((\"https:\" == document.location.protocol) ? \"https://ssl.\" : \"http://www.\");")
# file.write("document.write(unescape(\"%3Cscript src=\'\" + gaJsHost + \"google-analytics.com/ga.js\' type=\'text/javascript\'%3E%3C/script%3E\"));")
# file.write("</script>")
# file.write("<script type=\"text/javascript\">")
# file.write("try {")
# file.write("var pageTracker = _gat._getTracker(\"UA-11026338-3\");")
# file.write("pageTracker._trackPageview();")
# file.write("} catch(err) {}</script>")
# file.write("</body></html>")
# file.close()
#
#def createresults(header, input, name, time, missedligands=[]):
# """
# create the results web page for cgi-based runs
#
# parameters
# header: the header of the pqr file (string)
# input: a flag whether an input file has been created (int)
# tmpdir: the resulting file directory (string)
# name: the result file root name, based on local time (string)
# time: the time taken to run the script (float)
# missedligands: a list of ligand names whose parameters could
# not be assigned. optional. (list)
# """
# newheader = string.replace(header, "\n", "<br>")
# newheader = string.replace(newheader," "," ")
#
# filename = "%s%s%s/%s.html" % (INSTALLDIR, tmpdir, jobid, name)
# file = open(filename, "w")
#
# file.write("<html>\n")
# file.write("<head>\n")
# file.write("<title>pdb2pqr results</title>\n")
# file.write("<link rel=\"stylesheet\" href=\"%s\" type=\"text/css\">\n" % stylesheet)
# file.write("</head>\n")
#
# file.write("<body>\n")
# file.write("<h2>pdb2pqr results</h2>\n")
# file.write("<p>\n")
# file.write("here are the results from pdb2pqr. the files will be available on the ")
# file.write("server for a short period of time if you need to re-access the results.<p>\n")
#
# file.write("<a href=\"%s%s%s.pqr\">%s.pqr</a><br>\n" % (website, tmpdir, name, name))
# if input:
# file.write("<a href=\"%s%s%s.in\">%s.in</a><br>\n" % (website, tmpdir, name, name))
# pkaname = "%s%s%s/%s.propka" % (INSTALLDIR, tmpdir, jobid, name)
# if os.path.isfile(pkaname):
# file.write("<a href=\"%s%s%s.propka\">%s.propka</a><br>\n" % (website, tmpdir, name, name))
# typename = "%s%s%s/%s-typemap.html" % (INSTALLDIR, tmpdir, jobid, name)
# if os.path.isfile(typename):
# file.write("<a href=\"%s%s%s-typemap.html\">%s-typemap.html</a><br>\n" % (website, tmpdir, name, name))
# file.write("<p>the header for your pqr file, including any warnings generated, is:<p>\n")
# file.write("<blockquote><code>\n")
# file.write("%s<p>\n" % newheader)
# file.write("</code></blockquote>\n")
# if missedligands != []:
# file.write("the forcefield that you have selected does not have ")
# file.write("parameters for the following ligands in your pdb file. please visit ")
# file.write("<a href=\"http://davapc1.bioch.dundee.ac.uk/programs/prodrg/\">prodrg</a> ")
# file.write("to convert these ligands into mol2 format. this ligand can the be ")
# file.write("parameterized in your pdb2pqr calculation using the peoe_pb methodology via ")
# file.write("the 'assign charges to the ligand specified in a mol2 file' checkbox:<p>\n")
# file.write("<blockquote><code>\n")
# for item in missedligands:
# file.write("%s<br>\n" % item)
# file.write("<p></code></blockquote>\n")
# file.write("if you would like to run pdb2pqr again, please click <a href=\"%s%s\">\n" % (website, webname))
# file.write("here</a>.<p>\n")
# file.write("if you would like to run apbs with these results, please click <a href=\"%s../apbs/index.py?pdb2pqr-id=%s\">here</a>.<p>\n" % (website[:-1], name))
# file.write("<p>thank you for using the pdb2pqr server!<p>\n")
# file.write("<font size=\"-1\"><p>total time on server: %.2f seconds</font><p>\n" % time)
# file.write("<font size=\"-1\"><center><i>last updated %s</i></center></font>\n" % __date__)
# file.write("<script type=\"text/javascript\">")
# file.write("var gaJsHost = ((\"https:\" == document.location.protocol) ? \"https://ssl.\" : \"http://www.\");")
# file.write("document.write(unescape(\"%3Cscript src=\'\" + gaJsHost + \"google-analytics.com/ga.js\' type=\'text/javascript\'%3E%3C/script%3E\"));")
# file.write("</script>")
# file.write("<script type=\"text/javascript\">")
# file.write("try {")
# file.write("var pageTracker = _gat._getTracker(\"UA-11026338-3\");")
# file.write("pageTracker._trackPageview();")
# file.write("} catch(err) {}</script>")
# file.write("</body>\n")
# file.write("</html>\n")
def checkprogress(jobid=None,appServicePort=None,calctype=None):
"""
Finds out if the job has been completed
"""
if have_opal:
# construct soap request
try:
status=appServicePort.queryStatus(queryStatusRequest(jobid))
except Exception, e:
return ["error"]
if status._code == 4:
return ["error"]
if status._code == 8:
return ["complete",status]
else:
return ["running",status]
else:
progress = []
file = open('%s%s%s/%s_status' % (INSTALLDIR,TMPDIR,jobid, form["calctype"].value))
for line in file.readlines():
progress.append(string.strip(line))
file.close()
return progress
def mainCGI():
"""
Main method for determining the query page output
"""
logopts = {}
print "Content-type: text/html\n\n"
calctype = form["calctype"].value
# prints version error, if it exists
if form["jobid"].value == 'False':
print printheader("%s Job Status Page" % calctype.upper())
progress = "version_mismatch"
runtime = 0
elif form["jobid"].value == 'notenoughmem':
print printheader("%s Job Status Page" % calctype.upper())
progress = "not_enough_memory"
runtime = 0
else:
progress = None
#Check for error html
errorpath = '%s%s%s.html' % (INSTALLDIR, TMPDIR, form["jobid"].value)
if os.path.isfile(errorpath):
string = ""
string+= "<html>\n"
string+= "\t<head>\n"
string+= "\t\t<meta http-equiv=\"Refresh\" content=\"0; url=%s%s%s.html\">\n" % (WEBSITE, TMPDIR, form["jobid"].value)
string+= "\t</head>\n"
string+= "</html>\n"
print string
return
# prepares for Opal query, if necessary
if have_opal:
if calctype=="pdb2pqr":
opal_url = PDB2PQR_OPAL_URL
elif calctype=="apbs":
opal_url = APBS_OPAL_URL
appLocator = AppServiceLocator()
appServicePort = appLocator.getAppServicePort(opal_url)
else:
appServicePort = None
# if PDB2PQR, determines if link to APBS calculation should be shown
if calctype=="pdb2pqr":
#if(form["apbsinput"].value=="True"): # change to use a file
# apbs_input = True
#else:
# apbs_input = False
apbsInputFile = open('%s%s%s/apbs_input' % (INSTALLDIR, TMPDIR, form["jobid"].value))
apbs_input = apbsInputFile.read()
apbsInputFile.close()
if apbs_input=="True":
apbs_input = True
else:
apbs_input = False
typemapInputFile = open('%s%s%s/typemap' % (INSTALLDIR, TMPDIR, form["jobid"].value))
typemap = typemapInputFile.read()
typemapInputFile.close()
if typemap=="True":
typemap = True
else:
typemap = False
if have_opal and progress == None:
if form["calctype"].value=="pdb2pqr":
pdb2pqrJobIDFile = open('%s%s%s/pdb2pqr_opal_job_id' % (INSTALLDIR, TMPDIR, form["jobid"].value))
jobid = pdb2pqrJobIDFile.read()
pdb2pqrJobIDFile.close()
elif form["calctype"].value=="apbs":
apbsJobIDFile = open('%s%s%s/apbs_opal_job_id' % (INSTALLDIR, TMPDIR, form["jobid"].value))
jobid = apbsJobIDFile.read()
apbsJobIDFile.close()
else:
jobid = form["jobid"].value
if progress == None:
cp = checkprogress(jobid,appServicePort,calctype) # finds out status of job
progress = cp[0]
#initialize with bogus value just in case
starttime = time.time()
if progress == "running" or progress == "complete":
timefile = open('%s%s%s/%s_start_time' % (INSTALLDIR, TMPDIR, form["jobid"].value, form["calctype"].value))
starttime = float(timefile.read())
timefile.close()
if progress == "running" or (have_opal and progress not in ("version_mismatch",
"not_enough_memory",
"error",
"complete")):
runtime = time.time()-starttime
elif progress == "complete":
endTimeFileString = '%s%s%s/%s_end_time' % (INSTALLDIR, TMPDIR, form["jobid"].value, form["calctype"].value)
if have_opal and not os.path.isfile(endTimeFileString):
runtime = time.time()-starttime
with open(endTimeFileString, 'w') as endTimeFile:
endTimeFile.write(str(time.time()))
else:
with open(endTimeFileString, 'r') as endTimeFile:
runtime = float(endTimeFile.read())-starttime
else:
runtime = -1
if progress == "running":
#if have_opal:
# resultsurl = cp[1]._baseURL
#else:
if calctype=="pdb2pqr":
resultsurl = '%squerystatus.cgi?jobid=%s&apbsinput=%s&calctype=pdb2pqr' % (WEBSITE, form["jobid"].value, apbs_input)
else:
resultsurl = '%squerystatus.cgi?jobid=%s&calctype=apbs' % (WEBSITE, form["jobid"].value)
if progress == "complete":
print printheader("%s Job Status Page" % calctype.upper(), jobid=form["jobid"].value)
elif progress == "error":
print printheader("%s Job Status Page - Error" % calctype.upper(),0, jobid=form["jobid"].value)
elif progress == "running": # job is not complete, refresh in 30 seconds
print printheader("%s Job Status Page" % calctype.upper(), refresh, jobid=form["jobid"].value)
print "<BODY>\n<P>"
print "<h3>Status"
print "</h3>"
print "Message: %s<br />" % progress
print "Run time: %s seconds<br />" % int(runtime)
print "Current time: %s<br />" % time.asctime()
print "</P>\n<HR>\n<P>"
if progress == "complete":
if calctype=="pdb2pqr":
nexturl = 'apbs_cgi.cgi?jobid=%s' % form["jobid"].value
else:
nexturl = 'visualize.cgi?jobid=%s' % form["jobid"].value
if have_opal:
resp = appServicePort.getOutputs(getOutputsRequest(jobid))
filelist = resp._outputFile
print "Here are the results:<ul>"
print "<li>Input files<ul>"
if calctype=="pdb2pqr":
# this code should be cleaned up once local PDB2PQR runs output the PDB file with the .pdb extension
if have_opal:
for i in range(0,len(filelist)):
if len(filelist[i]._name) == 4:
print "<li><a href=%s>%s</a></li>" % (filelist[i]._url, filelist[i]._name)
else:
print "<li><a href=%s%s%s/%s.pdb>%s.pdb</a></li>" % (WEBSITE, TMPDIR, jobid, jobid, jobid)
elif calctype=="apbs":
if have_opal:
for i in range(0,len(filelist)):
if filelist[i]._name == "apbsinput.in" or filelist[i]._name[-4:] == ".pqr":
print "<li><a href=%s>%s</a></li>" % (filelist[i]._url, filelist[i]._name)
else:
print "<li><a href=%s%s%s/apbsinput.in>apbsinput.in</a></li>" % (WEBSITE, TMPDIR, jobid)
print "<li><a href=%s%s%s/%s.pqr>%s.pqr</a></li>" % (WEBSITE, TMPDIR, jobid, jobid, jobid)
print "</ul></li>"
print "<li>Output files<ul>"
queryString = [str(os.environ["REMOTE_ADDR"])]
# Getting PDB2PQR run log info
if os.path.isfile('%s%s%s/pdb2pqr_log' % (INSTALLDIR, TMPDIR, jobid)):
pdb2pqrLogFile=open('%s%s%s/pdb2pqr_log' % (INSTALLDIR, TMPDIR, jobid), 'r')
logstr=pdb2pqrLogFile.read().split('\n')
templogopts = eval(logstr[0])
pdb2pqrLogFile.close()
queryString.insert(0, templogopts.get('pdb',''))
if calctype=="pdb2pqr":
if have_opal:
for i in range(0,len(filelist)):
if filelist[i]._name.endswith((".propka", "-typemap.html", ".pqr", ".in")):
# if filelist[i]._name[-4:]==".pqr":
# # Getting pqr file length for PDB2PQR Opal run
# f=urllib.urlopen(filelist[i]._url)
# #pqrOpalFileLength = len(f.readlines())
# f.close()
print "<li><a href=%s>%s</a></li>" % (filelist[i]._url, filelist[i]._name)
#Get the first line of the summary file.
if filelist[i]._name.endswith(".summary"):
f=urllib.urlopen(filelist[i]._url)
summaryLine = f.readline().strip()
#logopts["pdb"]=logopts.get("pdb", "") + "|" + summaryLine
queryString.append(summaryLine)
f.close()
# logRun(logopts, runtime, pqrOpalFileLength, logff, REMOTE_ADDR)
else:
#Get the first line of the summary file.
summaryFile = '%s%s%s/%s%s' % (INSTALLDIR, TMPDIR, jobid, jobid, ".summary")
if os.path.isfile(summaryFile):
with open(summaryFile) as f:
summaryLine = f.readline().strip()
#logopts["pdb"]=logopts.get("pdb", "") + "|" + summaryLine
queryString.append(summaryLine)
outputfilelist = glob.glob('%s%s%s/*.propka' % (INSTALLDIR, TMPDIR, jobid))
for i in range(0,len(outputfilelist)):
outputfilelist[i] = os.path.basename(outputfilelist[i])
for extension in ["-typemap.html", ".pqr", ".in"]:
if extension != ".in" or apbs_input != False:
if extension == "-typemap.html" and typemap == False:
continue
outputfilelist.append('%s%s' % (jobid, extension))
for outputfile in outputfilelist:
print "<li><a href=%s%s%s/%s>%s</a></li>" % (WEBSITE, TMPDIR, jobid, outputfile, outputfile)
logopts['queryPDB2PQR'] = '|'.join(queryString)
#for extension in ["-typemap.html", ".pqr", ".in"]:
# print "<li><a href=%s%s%s/%s%s>%s%s</a></li>" % (WEBSITE, TMPDIR, jobid, jobid, extension, jobid, extension)
elif calctype=="apbs":
if have_opal:
for i in range(0,len(filelist)):
if filelist[i]._name[-3:]==".dx":
# compressing APBS OpenDX output files
currentpath = os.getcwd()
zipjobid = filelist[i]._name.split("-")[0]
urllib.urlretrieve(filelist[i]._url, '%s%s%s/%s' % (INSTALLDIR, TMPDIR, zipjobid, filelist[i]._name))
os.chdir('%s%s%s' % (INSTALLDIR, TMPDIR, zipjobid))
# making both the dx file and the compressed file (.gz) available in the directory
syscommand = 'cp %s dxbkupfile' % (filelist[i]._name)
os.system(syscommand)
syscommand = 'gzip -9 ' + filelist[i]._name
os.system(syscommand)
syscommand = 'mv dxbkupfile %s' % (filelist[i]._name)
os.system(syscommand)
os.chdir(currentpath)
outputfilezip = filelist[i]._name + '.gz'
print "<li><a href=%s%s%s/%s>%s</a></li>" % (WEBSITE, TMPDIR, zipjobid, outputfilezip, outputfilezip)
else:
outputfilelist = glob.glob('%s%s%s/%s-*.dx' % (INSTALLDIR, TMPDIR, jobid, jobid))
for outputfile in outputfilelist:
# compressing APBS OpenDX output files
currentpath = os.getcwd()
workingpath = os.path.dirname(outputfile)
os.chdir(workingpath)
# making both the dx file and the compressed file (.gz) available in the directory
syscommand = 'cp %s dxbkupfile' % (os.path.basename(outputfile))
os.system(syscommand)
syscommand = 'gzip -9 ' + os.path.basename(outputfile)
os.system(syscommand)
syscommand = 'mv dxbkupfile %s' % (os.path.basename(outputfile))
os.system(syscommand)
os.chdir(currentpath)
outputfilezip = outputfile+".gz"
print "<li><a href=%s%s%s/%s>%s</a></li>" % (WEBSITE, TMPDIR, jobid, os.path.basename(outputfilezip), os.path.basename(outputfilezip))
logopts['queryAPBS'] = '|'.join(queryString)
print "</ul></li>"
print "<li>Runtime and debugging information<ul>"
if have_opal:
stdouturl = resp._stdOut
stderrurl = resp._stdErr
else:
stdouturl = "%s%s%s/%s_stdout.txt" % (WEBSITE, TMPDIR, jobid, calctype)
stderrurl = "%s%s%s/%s_stderr.txt" % (WEBSITE, TMPDIR, jobid, calctype)
print "<li><a href=%s>Program output (stdout)</a></li>" % stdouturl
print "<li><a href=%s>Program errors and warnings (stderr)</a></li>" % stderrurl
print "</ul></li></ul>"
#if have_opal:
# resp = appServicePort.getOutputs(getOutputsRequest(jobid))
# for opalfile in resp._outputFile:
# if opalfile._name[-8:]!="-input.p":
# print "<li><a href=%s>%s</a></li>" % (opalfile._url, opalfile._name)
# print "<li><a href=%s>Standard output</a></li>" % (resp._stdOut)
# print "<li><a href=%s>Standard error</a></li>" % (resp._stdErr)
#else:
# for line in cp[1:]:
# line = os.path.basename(line)
# if line[-8:]!="-input.p":
# if line[-11:]=="_stdout.txt":
# printname = "Standard output"
# elif line[-11:]=="_stderr.txt":
# printname = "Standard error"
# else:
# printname = line
# print "<li><a href=%s>%s</a></li>" % (WEBSITE+TMPDIR+jobid+"/"+line,printname)
if calctype=="pdb2pqr" and apbs_input and HAVE_APBS:
print "</ul></p><hr><p><b><a href=%s>Click here</a> to run APBS with your results.</b></p>" % nexturl
elif calctype=="apbs":
print "</ul></p><hr><p><b><a href=%s>Click here</a> to visualize your results.</b></p>" % nexturl
elif progress == "error":
print "There was an error with your query request. This page will not refresh."
print "</ul></li>"
print "<li>Runtime and debugging information<ul>"
if have_opal:
resp = appServicePort.getOutputs(getOutputsRequest(jobid))
stdouturl = resp._stdOut
stderrurl = resp._stdErr
else:
stdouturl = "%s%s%s/%s_stdout.txt" % (WEBSITE, TMPDIR, jobid, calctype)
stderrurl = "%s%s%s/%s_stderr.txt" % (WEBSITE, TMPDIR, jobid, calctype)
print "<li><a href=%s>Program output (stdout)</a></li>" % stdouturl
print "<li><a href=%s>Program errors and warnings (stderr)</a></li>" % stderrurl
print "</ul></li></ul>"
elif progress == "running":
print "Page will refresh in %d seconds<br />" % refresh
print "<HR>"
print "<small>Your results will appear at <a href=%s>this page</a>. If you want, you can bookmark it and come back later (note: results are only stored for approximately 12-24 hours).</small>" % resultsurl
elif progress == "version_mismatch":
print "The versions of APBS on the local server and on the Opal server do not match, so the calculation could not be completed"
print "</P>"
print "<script type=\"text/javascript\">"
for key in logopts:
print getEventTrackingString('queryData', key, logopts[key]),
#print "_gaq.push(['_trackPageview', '/main_cgi/has_%s_%s.html']);" % (key, logopts[key])
print "</script>"
print "</BODY>"
print "</HTML>"
if __name__ == "__main__" and os.environ.has_key("REQUEST_METHOD"):
""" Determine if called from command line or CGI """
refresh=30
if not form.has_key("jobid") and form["calctype"].value=="pdb2pqr":
print "Content-type: text/html\n\n"
print printheader("PDB2PQR Job Status - Error")
text="<BODY>\n"
text+="\t<H2>Missing jobid field</H2>\n"
text+="\t<P>Your request url is missing the jobid field</P>\n"
text += "<script type=\"text/javascript\">"
text += "var gaJsHost = ((\"https:\" == document.location.protocol) ? \"https://ssl.\" : \"http://www.\");"
text += "document.write(unescape(\"%3Cscript src=\'\" + gaJsHost + \"google-analytics.com/ga.js\' type=\'text/javascript\'%3E%3C/script%3E\"));"
text += "</script>"
text += "<script type=\"text/javascript\">"
text += "try {"
text += "var pageTracker = _gat._getTracker(\"UA-11026338-3\");"
text += "pageTracker._trackPageview();"
text += "} catch(err) {}</script>"
text+="</BODY>\n</HTML>"
print text
sys.exit(2)
if (form["calctype"].value=="pdb2pqr" and HAVE_PDB2PQR_OPAL=="1") or (form["calctype"].value=="apbs" and APBS_OPAL_URL!=""):
have_opal = True
from AppService_client import AppServiceLocator, getAppMetadataRequest, launchJobRequest, launchJobBlockingRequest, getOutputAsBase64ByNameRequest, queryStatusRequest, getOutputsRequest
from AppService_types import ns0
from ZSI.TC import String
else:
have_opal = False
mainCGI()