diff --git a/.gitignore b/.gitignore index f9fffd2..ce84236 100644 --- a/.gitignore +++ b/.gitignore @@ -7,3 +7,10 @@ .DS_Store *.html *_files/ +_test.pdf +_test.qmd +index.aux +index.log +index.pdf +index.tex +index.toc diff --git a/index.qmd b/index.qmd index 3b1ebab..07cbdb2 100644 --- a/index.qmd +++ b/index.qmd @@ -61,3 +61,25 @@ By definition `r glossary("MBON")` is a network, so this is inclusive of and mea - **Modeling** methods have dramatically improved over time and are ripe for fresh application. The R package `dismo` originally came came out with an [SDM vignette](https://cran.r-project.org/web/packages/dismo/vignettes/sdm.pdf) as a practical supplement to their excellent review of SDMs [@elith2009] and using the Maxent algorithm [@elith2011]. The raster package furthered that (raster[ sdm](https://rspatial.org/raster/sdm/)) and now there's [`terra` sdm](https://rspatial.org/sdm/). Alongside these developments has been a boon of cloud-computing, particularly Google Earth Engine [@gorelick2017; @camposEcologicalNicheModels2023], allowing for dense global raster processing. - The world is quickly moving towards a future trying to conserve 30% of the oceans by 2030, so called "[**30 by 30**](https://en.wikipedia.org/wiki/30_by_30)". In the U.S., this is [America the Beautiful](https://www.noaa.gov/america-the-beautiful) initiative. We need biodiversity indicators to track progress. This push for conservation is driven by increasing impacts of **climate change**, as evidenced by marine heatwaves and shifts in population distributions. + +## Contribute + +We very much welcome your feedback, contributions and collaboration. Here are a few ways from least to most involved: + +1. Email Ben (ben\@ecoquants.com) with any suggestions, including suggested revisions of this online book. + + ::: {.callout-note} + Note that you can download this entire book as: + + - {{< fa file-pdf >}} Adobe Acrobat [pdf](https://marinebon.github.io/MarineSDMs/MarineSDMs.pdf) to add annotations; or + + - {{< fa file-word >}} Microsoft Word [docx](https://marinebon.github.io/MarineSDMs/MarineSDMs.docx) to edit with Track Changes on. + + These are available in the upper left navigation menu by clicking the download icon . + ::: + +2. Submit a [New Issue](https://github.com/marinebon/MarineSDMs/issues/new/choose) on Github. + +3. Click on the "Edit this Page" in the upper right. If you have a Github account, then you can fork this repository from owner "marinebon" to your username, edit the page(s) and submit a pull request. + +4. If you are a regular contributor, you can be added to the collaborators of this repository to make push changes directly (without needing a pull request). diff --git a/indicators.qmd b/indicators.qmd index 3f77f20..87d75c0 100644 --- a/indicators.qmd +++ b/indicators.qmd @@ -7,11 +7,11 @@ title: "Indicators" Here are the classic diversity indices from the R package `vegan`: $$ -\begin{align*} +\begin{aligned} H &= - \sum_{i=1}^S p_i \log_b p_i &\text{Shannon-Weaver} \\ D_1 &= 1 - \sum_{i=1}^S p_i^2 &\text{Simpson} \\ -D_2 &= \frac{1}{\sum_{i=1}^S p_i^2} &\text{inverse Simpson} \\ -\end{align*} +D_2 &= \frac{1}{\sum_{i=1}^S p_i^2} &\text{inverse Simpson} +\end{aligned} $$ ## Endemism