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command failed >>/tmp/_MEIVWgmag/harvest --midpoint-reroot -u -q -i #24

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smurray92 opened this issue Apr 27, 2022 · 1 comment
Open

command failed >>/tmp/_MEIVWgmag/harvest --midpoint-reroot -u -q -i #24

smurray92 opened this issue Apr 27, 2022 · 1 comment

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@smurray92
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The following command failed:

/tmp/_MEIVWgmag/harvest --midpoint-reroot -u -q -i /project/genomicfoodbornepathogenecology/Continuum/ST58fasta/parsnp/parsnp.ggr -o /project/genomicfoodbornepathogenecology/Continuum/ST58fasta/parsnp/parsnp.ggr -n /project/genomicfoodbornepathogenecology/Continuum/ST58fasta/parsnp/parsnp.tree
Please veryify input data and restart Parsnp. If the problem persists please contact the Parsnp development team.
@bkille
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bkille commented Apr 27, 2022

Hi @smurray92, thanks for opening an issue! In order to assist you better, could you please post the entire command and include all of the output as well?

Thanks,
Bryce

@bkille bkille transferred this issue from marbl/parsnp Nov 16, 2023
@bkille bkille transferred this issue from marbl/gingr Nov 16, 2023
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@bkille @smurray92