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screen: usage typo
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Brian Ondov committed Sep 23, 2017
1 parent 4a82068 commit 5205a21
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/mash/CommandScreen.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -47,7 +47,7 @@ CommandScreen::CommandScreen()
useOption("threads");
// useOption("minCov");
// addOption("saturation", Option(Option::Boolean, "s", "", "Include saturation curve in output. Each line will have an additional field representing the absolute number of k-mers seen at each Jaccard increase, formatted as a comma-separated list.", ""));
addOption("winning!", Option(Option::Boolean, "w", "", "Winner-takes-all strategy for identity estimates. After counting hashes for each query, hashes that appear in multiple queries will removed from all except the one with the best identity (ties broken by larger query), and other identities will be reduced. This removes output redundancy, providing a rough compositional outline.", ""));
addOption("winning!", Option(Option::Boolean, "w", "", "Winner-takes-all strategy for identity estimates. After counting hashes for each query, hashes that appear in multiple queries will be removed from all except the one with the best identity (ties broken by larger query), and other identities will be reduced. This removes output redundancy, providing a rough compositional outline.", ""));
//useSketchOptions();
addOption("identity", Option(Option::Number, "i", "Output", "Minimum identity to report. Inclusive unless set to zero, in which case only identities greater than zero (i.e. with at least one shared hash) will be reported. Set to -1 to output everything.", "0", -1., 1.));
addOption("pvalue", Option(Option::Number, "v", "Output", "Maximum p-value to report.", "1.0", 0., 1.));
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