forked from uw-psych/hyakvnc_apptainer
-
Notifications
You must be signed in to change notification settings - Fork 0
159 lines (146 loc) · 7.37 KB
/
apptainer-image.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
name: Build and Deploy Apptainer Container
run-name: "Building ${{ inputs.image_name }}:${{ inputs.image_tag }}"
on:
workflow_dispatch:
inputs:
image_name:
description: 'Name of the container to build and deploy'
required: true
type: string
image_tags:
description: 'Tags of the container to build and deploy'
required: false
default: 'latest'
type: string
base_image_tag:
description: 'Tag of the base image to use'
required: false
default: 'latest'
type: string
build_args:
description: 'Build arguments to pass to the container build'
required: false
default: ''
type: string
defaults:
run:
shell: bash
env:
APPTAINER_VERSION: 1.2.5
SETUP_DOWNLOADS_DIR: .setup-downloads
GH_TOKEN: ${{ github.token }}
jobs:
build-and-push-image:
runs-on: ubuntu-latest
name: Build and Deploy Apptainer Container
permissions:
contents: read
packages: write
steps:
- name: Check out code for the container build
uses: actions/checkout@v4
- name: Create SETUP_DOWNLOADS_DIR
run: |
set -euxo pipefail
mkdir -p "${SETUP_DOWNLOADS_DIR}"
- name: Cache downloads in SETUP_DOWNLOADS_DIR
uses: actions/cache@v3
with:
path: ${{ env.SETUP_DOWNLOADS_DIR }}
key: ${{ runner.os }}
- name: Get container name
run: |
set -euxo pipefail
IMAGE_NAME="${{ inputs.image_name }}"
[[ -n "${IMAGE_NAME:-}" ]] || { echo "No container name found." ; exit 1; }
echo "Container name is \"${IMAGE_NAME:-}\""
echo "IMAGE_NAME="${IMAGE_NAME}"" >> $GITHUB_ENV
[[ -d "${DEF_DIR:=def/${IMAGE_NAME}}" ]] || { echo "No directory found for DEF_DIR at \"${DEF_DIR:-}\"" ; exit 1; }
[[ -f "${DEF_DIR}/Singularity" ]] || { echo "No definition file found at \"${DEF_DIR}/Singularity\"" ; exit 1; }
echo "DEF_DIR=${DEF_DIR}" >> $GITHUB_ENV
all_image_tags=()
all_image_tags+=("${{ inputs.image_tags }}")
IMAGE_TAG="${all_image_tags[0]:-latest}"
echo "Container tag is \"${IMAGE_TAG:-}\""
echo "IMAGE_TAG="${IMAGE_TAG}"" >> $GITHUB_ENV
# Get the base image name and tag from the container
BOOTSTRAP_FROM_IMAGE="$(sed -nE '0,/^\s*BOOTSTRAP_FROM_IMAGE=(\S*).*$/s//\1/p' "${DEF_DIR}/Singularity" || true)"
if [[ -n "${BOOTSTRAP_FROM_IMAGE}" ]]; then
BASE_IMAGE_NAME="${BOOTSTRAP_FROM_IMAGE}"
echo "Base image name is \"${BASE_IMAGE_NAME}\""
echo "BASE_IMAGE_NAME=\"${BASE_IMAGE_NAME}\"" >> $GITHUB_ENV
BASE_IMAGE_TAG="${{ inputs.base_image_tag }}"
BASE_IMAGE_TAG="${BASE_IMAGE_TAG:-latest}"
echo "Base image tag is \"{BASE_IMAGE_TAG}\"" && echo "BASE_IMAGE_TAG=\"${BASE_IMAGE_TAG}\"" >> $GITHUB_ENV
fi
# Add bootstrap args for derived containers
echo "BOOTSTRAP_SOURCE=oras" >> "${DEF_DIR}/.build-arg-file"
echo "BOOTSTRAP_IMAGE_NAME=${BASE_IMAGE_NAME:-}" >> "${DEF_DIR}/.build-arg-file"
echo "BOOTSTRAP_FROM_REPO=ghcr.io/${{ github.repository }}" >> "${DEF_DIR}/.build-arg-file"
echo "BOOTSTRAP_FROM_SUFFIX=:${BASE_IMAGE_TAG:-latest}" >> "${DEF_DIR}/.build-arg-file"
if [[ -n "${{ inputs.build_args }}" ]]; then
echo "Found build args: \"${{ inputs.build_args }}\""
echo "${{ inputs.build_args }}" >> "${DEF_DIR}/.build-arg-file"
fi
echo ".build-arg-file contents:"
cat "${DEF_DIR}/.build-arg-file" 2>/dev/null || echo "No build-arg-file found."
- name: Delete GitHub AGENT_TOOLSDIRECTORY to free space
run: |
set -euxo pipefail
echo "Disk space before:" && df -hl
sudo rm -rf /opt/hostedtoolcache; echo "Done removing /opt/hostedtoolcache"
echo "Disk space after:" && df -hl
- name: Delete .NET, Android, Haskell tools to free space
run: |
set -euxo pipefail
echo "Disk space before:" && df -hl
sudo rm -rf /usr/share/dotnet /opt/ghc /usr/local/lib/android && echo "Done removing .NET, Android, and Haskell tools."
echo "Disk space after:" && df -hl
- name: Download and Install Apptainer
run: |
set -euxo pipefail
APPTAINER_LATEST_TAGNAME="$(gh release view --repo apptainer/apptainer --json tagName -t '{{.tagName}}' | head -n 1)"
[[ -n "${APPTAINER_LATEST_TAGNAME}" ]] || { echo "No latest tag found for apptainer/apptainer"; exit 1; }
echo "Latest tag for apptainer/apptainer is \"${APPTAINER_LATEST_TAGNAME}\""
gh release download --repo apptainer/apptainer --pattern 'apptainer_*_amd64.deb' --skip-existing -O "${SETUP_DOWNLOADS_DIR}/apptainer_${APPTAINER_LATEST_TAGNAME}.deb" "${APPTAINER_LATEST_TAGNAME}"
sudo dpkg --install --force-depends "${SETUP_DOWNLOADS_DIR}/apptainer_${APPTAINER_LATEST_TAGNAME}.deb" && sudo apt-get install --fix-broken --yes --quiet
apptainer --version
- name: Download and Install oras-cli
run: |
set -euxo pipefail
ORAS_LATEST_TAGNAME="$(gh release view --repo oras-project/oras --json tagName -t '{{.tagName}}' | head -n 1)"
[[ -n "${ORAS_LATEST_TAGNAME}" ]] || { echo "No latest tag found for oras-project/oras"; exit 1; }
echo "Latest tag for oras-project/oras is \"${ORAS_LATEST_TAGNAME}\""
gh release download --repo oras-project/oras --pattern '*linux_amd64.tar.gz' --skip-existing -O "${SETUP_DOWNLOADS_DIR}/oras_${ORAS_LATEST_TAGNAME}.tar.gz" "${ORAS_LATEST_TAGNAME}"
sudo mkdir -p /opt/local/bin
sudo tar -xzf "${SETUP_DOWNLOADS_DIR}/oras_${ORAS_LATEST_TAGNAME}.tar.gz" -C /opt/local/bin oras && sudo chmod +x /opt/local/bin/oras
export PATH="/opt/local/bin:${PATH}"
echo "PATH=${PATH}" >> $GITHUB_ENV
oras version
- name: Build Container
run: |
set -euxo pipefail
mkdir -p sif
pushd "${DEF_DIR}"
echo "Building \"${IMAGE_NAME}.sif\""
touch .build-arg-file
apptainer build --warn-unused-build-args --disable-cache --fix-perms --force --build-arg-file .build-arg-file ../../sif/"${IMAGE_NAME}.sif" Singularity || { echo "Failed to build \"${IMAGE_NAME}.sif\""; exit 1; }
echo "Built \"${IMAGE_NAME}.sif\""
popd
- name: Login and Deploy Container
run: |
set -euxo pipefail
[[ -r "sif/${IMAGE_NAME}.sif" ]] || { echo "No container named sif/${IMAGE_NAME:-}.sif found."; exit 1; }
echo "Container size:"
du -h "sif/${IMAGE_NAME}.sif"
echo "Disk usage:"
df -h
echo "Pushing \"sif/${IMAGE_NAME}.sif\" to ghcr.io/${{ github.repository }}/${IMAGE_NAME}:${IMAGE_TAG}"
apptainer remote login -u ${{ github.actor }} -p ${{ secrets.TOKEN }} oras://ghcr.io
apptainer push -U "sif/${IMAGE_NAME}.sif" oras://ghcr.io/${{ github.repository }}/${IMAGE_NAME}:${IMAGE_TAG} || { echo "Failed to push \"sif/${IMAGE_NAME}.sif\' to ghcr.io/${{ github.repository }}/${IMAGE_NAME}:${IMAGE_TAG}"; exit 1; }
echo "Pushed \"sif/${IMAGE_NAME}.sif\" to ghcr.io/${{ github.repository }}/${IMAGE_NAME}:${IMAGE_TAG}"
# Add "latest" tag if IMAGE_TAG is not latest
if [[ "${IMAGE_TAG}" != "latest" ]]; then
oras login -u ${{ github.actor }} -p ${{ secrets.TOKEN }} ghcr.io
oras tag ghcr.io/${{ github.repository }}/${IMAGE_NAME}:${IMAGE_TAG} latest
fi