From a239e107fe8fdd8924ae6faf9dca1494bdd54dc7 Mon Sep 17 00:00:00 2001 From: Jake Tommey Date: Thu, 8 Aug 2024 11:03:22 +0200 Subject: [PATCH] remove priority information from job submission scripts --- scripts/run_submit/submit_priority.sh | 1 - scripts/run_submit/submit_priority_maxMem.sh | 1 - scripts/run_submit/submit_standby.sh | 1 - scripts/run_submit/submit_standby_dayMax.sh | 1 - scripts/run_submit/submit_standby_maxMem.sh | 1 - scripts/run_submit/submit_standby_maxMem_dayMax.sh | 1 - scripts/slurmOutput.yml | 8 ++++---- scripts/slurmStart.yml | 4 ++-- 8 files changed, 6 insertions(+), 12 deletions(-) diff --git a/scripts/run_submit/submit_priority.sh b/scripts/run_submit/submit_priority.sh index a1d82d0ce..33c8496d5 100644 --- a/scripts/run_submit/submit_priority.sh +++ b/scripts/run_submit/submit_priority.sh @@ -1,7 +1,6 @@ #!/bin/bash #SBATCH --qos=priority -#SBATCH --partition=priority #SBATCH --job-name=mag-run #SBATCH --output=slurm.log #SBATCH --mail-type=END,FAIL diff --git a/scripts/run_submit/submit_priority_maxMem.sh b/scripts/run_submit/submit_priority_maxMem.sh index 612b33efc..ae58b9695 100644 --- a/scripts/run_submit/submit_priority_maxMem.sh +++ b/scripts/run_submit/submit_priority_maxMem.sh @@ -1,7 +1,6 @@ #!/bin/bash #SBATCH --qos=priority -#SBATCH --partition=priority #SBATCH --job-name=mag-run #SBATCH --output=slurm.log #SBATCH --mail-type=END,FAIL diff --git a/scripts/run_submit/submit_standby.sh b/scripts/run_submit/submit_standby.sh index 8dca74aae..f0bff3233 100644 --- a/scripts/run_submit/submit_standby.sh +++ b/scripts/run_submit/submit_standby.sh @@ -1,7 +1,6 @@ #!/bin/bash #SBATCH --qos=standby -#SBATCH --partition=priority #SBATCH --job-name=mag-run #SBATCH --output=slurm.log #SBATCH --mail-type=END,FAIL diff --git a/scripts/run_submit/submit_standby_dayMax.sh b/scripts/run_submit/submit_standby_dayMax.sh index 39b04f8ba..d7836390d 100644 --- a/scripts/run_submit/submit_standby_dayMax.sh +++ b/scripts/run_submit/submit_standby_dayMax.sh @@ -1,7 +1,6 @@ #!/bin/bash #SBATCH --qos=standby -#SBATCH --partition=priority #SBATCH --job-name=mag-run #SBATCH --output=slurm.log #SBATCH --mail-type=END,FAIL diff --git a/scripts/run_submit/submit_standby_maxMem.sh b/scripts/run_submit/submit_standby_maxMem.sh index e556d4aff..23b099943 100644 --- a/scripts/run_submit/submit_standby_maxMem.sh +++ b/scripts/run_submit/submit_standby_maxMem.sh @@ -1,7 +1,6 @@ #!/bin/bash #SBATCH --qos=standby -#SBATCH --partition=priority #SBATCH --job-name=mag-run #SBATCH --output=slurm.log #SBATCH --mail-type=END,FAIL diff --git a/scripts/run_submit/submit_standby_maxMem_dayMax.sh b/scripts/run_submit/submit_standby_maxMem_dayMax.sh index 9e02db436..ac3ba4d30 100644 --- a/scripts/run_submit/submit_standby_maxMem_dayMax.sh +++ b/scripts/run_submit/submit_standby_maxMem_dayMax.sh @@ -1,7 +1,6 @@ #!/bin/bash #SBATCH --qos=standby -#SBATCH --partition=priority #SBATCH --job-name=mag-run #SBATCH --output=slurm.log #SBATCH --mail-type=END,FAIL diff --git a/scripts/slurmOutput.yml b/scripts/slurmOutput.yml index da4bfc325..f493010be 100644 --- a/scripts/slurmOutput.yml +++ b/scripts/slurmOutput.yml @@ -1,5 +1,5 @@ slurmjobs: - SLURM standby: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --partition=priority --time=24:00:00" - SLURM standby maxMem: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --partition=priority --time=24:00:00 --mem-per-cpu=0 --cpus-per-task=16" - SLURM priority: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=priority --partition=priority" - SLURM priority maxMem: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=priority --partition=priority --mem-per-cpu=0 --cpus-per-task=16" + SLURM standby: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --time=24:00:00" + SLURM standby maxMem: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --time=24:00:00 --mem-per-cpu=0 --cpus-per-task=16" + SLURM priority: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=priority" + SLURM priority maxMem: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=priority --mem-per-cpu=0 --cpus-per-task=16" diff --git a/scripts/slurmStart.yml b/scripts/slurmStart.yml index f3e52215e..8040e4a28 100644 --- a/scripts/slurmStart.yml +++ b/scripts/slurmStart.yml @@ -1,4 +1,4 @@ slurmjobs: - SLURM priority: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=priority --partition=priority --cpus-per-task=3" - SLURM standby: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=standby --partition=priority --cpus-per-task=3" + SLURM priority: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=priority --cpus-per-task=3" + SLURM standby: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=standby --cpus-per-task=3" SLURM medium: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=medium --cpus-per-task=3"