From 1c8c2ffe8324535a1e8b4c929e982981162d188e Mon Sep 17 00:00:00 2001
From: Jake Tommey <jake.tommey@gmail.com>
Date: Thu, 1 Aug 2024 00:15:36 +0200
Subject: [PATCH] modify standby runs to include parition information

---
 scripts/run_submit/submit_standby.sh               | 1 +
 scripts/run_submit/submit_standby_dayMax.sh        | 1 +
 scripts/run_submit/submit_standby_maxMem.sh        | 1 +
 scripts/run_submit/submit_standby_maxMem_dayMax.sh | 1 +
 scripts/slurmOutput.yml                            | 4 ++--
 scripts/slurmStart.yml                             | 2 +-
 6 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/scripts/run_submit/submit_standby.sh b/scripts/run_submit/submit_standby.sh
index f0bff3233..8dca74aae 100644
--- a/scripts/run_submit/submit_standby.sh
+++ b/scripts/run_submit/submit_standby.sh
@@ -1,6 +1,7 @@
 #!/bin/bash
 
 #SBATCH --qos=standby
+#SBATCH --partition=priority
 #SBATCH --job-name=mag-run
 #SBATCH --output=slurm.log
 #SBATCH --mail-type=END,FAIL
diff --git a/scripts/run_submit/submit_standby_dayMax.sh b/scripts/run_submit/submit_standby_dayMax.sh
index d7836390d..39b04f8ba 100644
--- a/scripts/run_submit/submit_standby_dayMax.sh
+++ b/scripts/run_submit/submit_standby_dayMax.sh
@@ -1,6 +1,7 @@
 #!/bin/bash
 
 #SBATCH --qos=standby
+#SBATCH --partition=priority
 #SBATCH --job-name=mag-run
 #SBATCH --output=slurm.log
 #SBATCH --mail-type=END,FAIL
diff --git a/scripts/run_submit/submit_standby_maxMem.sh b/scripts/run_submit/submit_standby_maxMem.sh
index 23b099943..e556d4aff 100644
--- a/scripts/run_submit/submit_standby_maxMem.sh
+++ b/scripts/run_submit/submit_standby_maxMem.sh
@@ -1,6 +1,7 @@
 #!/bin/bash
 
 #SBATCH --qos=standby
+#SBATCH --partition=priority
 #SBATCH --job-name=mag-run
 #SBATCH --output=slurm.log
 #SBATCH --mail-type=END,FAIL
diff --git a/scripts/run_submit/submit_standby_maxMem_dayMax.sh b/scripts/run_submit/submit_standby_maxMem_dayMax.sh
index ac3ba4d30..9e02db436 100644
--- a/scripts/run_submit/submit_standby_maxMem_dayMax.sh
+++ b/scripts/run_submit/submit_standby_maxMem_dayMax.sh
@@ -1,6 +1,7 @@
 #!/bin/bash
 
 #SBATCH --qos=standby
+#SBATCH --partition=priority
 #SBATCH --job-name=mag-run
 #SBATCH --output=slurm.log
 #SBATCH --mail-type=END,FAIL
diff --git a/scripts/slurmOutput.yml b/scripts/slurmOutput.yml
index fcabde798..da4bfc325 100644
--- a/scripts/slurmOutput.yml
+++ b/scripts/slurmOutput.yml
@@ -1,5 +1,5 @@
 slurmjobs:
-  SLURM standby: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --time=24:00:00"
-  SLURM standby maxMem: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --time=24:00:00 --mem-per-cpu=0 --cpus-per-task=16"
+  SLURM standby: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --partition=priority --time=24:00:00"
+  SLURM standby maxMem: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=standby --partition=priority --time=24:00:00 --mem-per-cpu=0 --cpus-per-task=16"
   SLURM priority: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=priority --partition=priority"
   SLURM priority maxMem: "sbatch --job-name=scripts-output --output=logs/out-%NAME-%j.out --error=logs/out-%NAME-%j.err --mail-type=END,FAIL --time=200 --mem-per-cpu=8000 --wrap=\"Rscript %SCRIPT\" --qos=priority --partition=priority --mem-per-cpu=0 --cpus-per-task=16"
diff --git a/scripts/slurmStart.yml b/scripts/slurmStart.yml
index 584ac675f..f3e52215e 100644
--- a/scripts/slurmStart.yml
+++ b/scripts/slurmStart.yml
@@ -1,4 +1,4 @@
 slurmjobs:
   SLURM priority: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=priority --partition=priority --cpus-per-task=3"
-  SLURM standby: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=standby --cpus-per-task=3"
+  SLURM standby: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=standby --partition=priority --cpus-per-task=3"
   SLURM medium: "sbatch --job-name=%NAME --output=logs/%NAME-%j.out --mail-type=END,FAIL --wrap=\"Rscript %SCRIPT\" --qos=medium --cpus-per-task=3"