bootstrap_twostep_models.sh

#!/bin/bash
source $HOME/miniconda3/etc/profile.d/conda.sh
conda activate microhomology_jax
set -eu

ANNOTATION_TYPE=$1
PARAM_GROUP=$2
NCPU=$3
LEFT_MOTIF_COUNT=$4
RIGHT_MOTIF_COUNT=$5
MODEL_TYPE=$6
L2=$7

Rscript $PWD/scripts/process_bootstrap_datasets.R $ANNOTATION_TYPE $PARAM_GROUP $NCPU $LEFT_MOTIF_COUNT $RIGHT_MOTIF_COUNT $MODEL_TYPE
echo "finished processing data for model fitting"

for iter in {1..100}; do
    COMMAND="sbatch -c $NCPU $PWD/fit_twostep_model.sh $ANNOTATION_TYPE $PARAM_GROUP $NCPU $LEFT_MOTIF_COUNT $RIGHT_MOTIF_COUNT $MODEL_TYPE $L2 $iter"
    echo $COMMAND
    $COMMAND
done