cfg.yml

file_io:
    dirs:
        studyDir: /biotic/home/marym/data/thesis
        subjectsDir: /media/NAS/mmiedema/reliability-mapping/subjects
        simDir: /biotic/home/marym/data/thesis/sim_data
        relDir: /media/NAS/mmiedema/reliability-mapping/
    file_ext:
        src_fif: -vol-5-src.fif
        mri_fif: COR-coreg.fif
        bem_fif: -5120-bem-sol.fif
        forward_fif: _raw_tsss-cleaned-fwd.fif
        nifti_file: _raw_tsss-cleaned-epo-ave_LCMV.nii
        nn_file: _NN.csv
        sim_epoch_fif: SEF_simDipole-epo.fif
reliability_mapping:
    data_division:
        num_replications: 4
        chronological: True
    nn:
        neighbourhood: 2
        radius: 0.005 # only used if neighbourhood = False
    ML:
        num_thresholds: 10
        init_beta: 0.3
        max_iterations: 50
        conv_tolerance: 0.0001
    files:
        MASK: None
    map_times:
        - 20
    map_thresholds:
        - 0.8
        - 0.5
data_processing:
    baseline:
        baseStart: -0.02
        baseEnd: 0.
    LCMV:
#        spacing: 8 # mm
        bfBaselineMin: -0.5
        bfBaselineMax: 0.0
        bfActiveMin: 0.0
        bfActiveMax: 0.1
        regularization: 0.01
studySettings:
    subjects:
#        - sub01
#        - sub02
        - sub03
    sim_modes:
#        - one_fixed
#        - one_jitter 
        - real_SEF
simTestData:
    base_subject:
        - sub03
    base_mode:
        - real_SEF
    sim_subject:
        - simsub
    sim_mode:
        - single-source