From 4d751e357f8fd3b7f332b638b5229bc80a24d107 Mon Sep 17 00:00:00 2001 From: Louis Aslett Date: Wed, 2 Oct 2024 18:44:10 +0100 Subject: [PATCH] Update to description file with ORCIDs, first kalis paper, and bug reports URL. --- DESCRIPTION | 28 ++++++++++++++++------------ 1 file changed, 16 insertions(+), 12 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index f4c25b9..de10ad6 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -3,23 +3,27 @@ Type: Package Title: High Performance Li & Stephens Local Ancestry Inference Version: 2.0.0 Authors@R: c(person("Louis", "Aslett", role = c("aut", "cre"), - email = "louis.aslett@durham.ac.uk"), + email = "louis.aslett@durham.ac.uk", + comment = c(ORCID = "0000-0003-2211-233X")), person("Ryan", "Christ", role = "aut", - email = "rchrist@wustl.edu")) + email = "rchrist@wustl.edu", + comment = c(ORCID = "0000-0002-2049-3389"))) Author: Louis Aslett [aut, cre], Ryan Christ [aut] Maintainer: Louis Aslett -Description: kalis provides a high performance implementation of the Li & - Stephens model for local - ancestry inference (local referring to a region of the genome). For a set of N - phased haplotypes, kalis computes the posterior marginal probability of each - haplotype copying every other haplotype by running N hidden Markov models in - parallel. This yields an N x N distance matrix that summarizes the recent - local ancestry at each variant of interest. The package provides functionality - for specifying a recombination map, site-specific mutation rates, and - differing prior copying probabilities for each recipient haplotype. Extensive - use is made of low level threading and CPU vector instructions. +Description: kalis provides a high performance + implementation of the Li & Stephens model + for local ancestry inference (local referring to a region of the genome). For + a set of N phased haplotypes, kalis computes the posterior marginal + probability of each haplotype copying every other haplotype by running N + hidden Markov models in parallel. This yields an N x N distance matrix that + summarizes the recent local ancestry at each variant of interest. The package + provides functionality for specifying a recombination map, site-specific + mutation rates, and differing prior copying probabilities for each recipient + haplotype. Extensive use is made of low level threading and CPU vector + instructions. License: GPL (>= 3) +BugReports: https://github.com/louisaslett/kalis/issues URL: https://kalis.louisaslett.com/, https://github.com/louisaslett/kalis LazyData: TRUE Depends: R (>= 3.5.0)