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While the format is still discussed (see marbl/Mash#44), the design should already make the implementation of JSON signature both easy and sufficiently performant.
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lgautier
changed the title
Implement JSON format discussin in MASH
Implement JSON format discussed in MASH
Jan 10, 2017
For the sake of global efficiency, a temp solution might be to work out a simple adapter mashing-pumpkins <-> sourmash and rely on that export (see sourmash-bio/sourmash#99 (comment) )
The adapter would also make it easy to plug the heap+set-based implementation into sourmash if the 1.5x-3x speedup is holding with real data.
The adapter is now in the code base (module mashingpumpkins.sourmash) and appears to be working (very) well.
The first release will not include specific JSON capabilities (and may never include any as long as sourmash_lib is providing the feature).
**edit: ** sourmash-bio/sourmash#99 (comment) is only about reading the interop JSON exchange format. Time permitting, I'll throw writing into the mix.
While the format is still discussed (see marbl/Mash#44), the design should already make the implementation of JSON signature both easy and sufficiently performant.
The text was updated successfully, but these errors were encountered: