.gitignore

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
.snakemake/
tmp/
.DS_Store
._.DS_Store
.envrc
._*
tests/output*/
tests/old_models/
tests/data/*.rick
tests/data/*/*.pkl
tests/data/*/*/*.pkl
tests/data/*/*/*/*.pkl
tests/data/*/*/*/*/*.pkl
tests/data/*/model/predictions/
tests/data/*/model/logs_final/
DeepMAsED-SM/bin/misc_r_functions/
DeepMAsED-SM/tests/output_*
DeepMAsED-SM/tests/data/*.gz
deepmased_trained/predictions/
screenlog.*
bin/misc_*
.figures/
logs/
archive/
*/archive/
.RData
.future

# hg
**/.hg/
**/.hg*


# C extensions
*.so

# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
*.egg-info/
.installed.cfg
*.egg
deepmased_files.txt

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*,cover
.hypothesis/

# Translations
*.mo
*.pot

# Django stuff:
*.log

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# pyenv python configuration file
.python-version