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make possible to exclude specific channels for summarized quant #29

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glormph opened this issue Nov 21, 2023 · 0 comments
Open

make possible to exclude specific channels for summarized quant #29

glormph opened this issue Nov 21, 2023 · 0 comments

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@glormph
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glormph commented Nov 21, 2023 •
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Empty channels can be removed specifically from the quantification step. They are not really a problem usually but:

  • PCA and channel quant plots are compresed
  • you must keep in PSMs which are otherwise crap as well

Ideally somehow not include them in summarization (i.e. remove from PSM table per set) sine this makes it possible to not use the --keenapsmsquant flag

@kbarylyuk
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