diff --git a/Glycine/max/studies/glyma.Yuan_Zhao_2007.yml b/Glycine/max/studies/glyma.Yuan_Zhao_2007.yml new file mode 100644 index 0000000..e870d58 --- /dev/null +++ b/Glycine/max/studies/glyma.Yuan_Zhao_2007.yml @@ -0,0 +1,57 @@ +--- +scientific_name: Glycine max +gene_symbols: + - GmMIPS1 +gene_symbol_long: d-myo-inositol 3-phosphate synthase gene 1 +gene_model_pub_name: DQ323904 +gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.11G238800.1 +confidence: 5 +curators: + - Raegan Nelson +comments: + - Gm-lpa-TW-1 lpa (low phytic acid) mutation resulted from a 2 bp deletion in MIPS1 + - Gm-lpa-TW-1 had a significant increase in inorganic phosphorus levels and a decrease in organic phosphorus levels compared to the WT + - Gm-lpa-TW-1 can negatively affect seed emergence when seeds are produced in unfavorable enviorments (spring season) +phenotype_synopsis: involved in the early stages of phytic acid synthesis +traits: + - entity_name: myo-inositol hexakisphosphate metabolic process + entity: GO:0033517 + - entity_name: phosphorus content + entity: TO:0001024 + - entity_name: seed germination stage + entity: PO:0007057 +references: + - citation: Yuan, Zhao et al., 2007 + doi: 10.1007/s00122-007-0621-2 + pmid: 17701395 + - citation: DeMers, Raboy et al., 2021 + doi: 10.3389/fpls.2021.708286 + pmid: 34531883 +--- +scientific_name: Glycine max +gene_symbols: + - GmIPK1 +gene_symbol_long: inositol 1,3,4,5,6 pentakisphosphate 2-kinase 1 +gene_model_pub_name: Glyma14g07880 +gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma14g07880 +confidence: 5 +curators: + - Raegan Nelson +comments: + - Gm-lpa-ZC-2 has a G to A point mutation on the 5th exon of IPK1 + - the lpa mutation in Gm-lpa-ZC-2 does not affect seed emergence rate or seed yield + - Gm-lpa-ZC-2 had a increase in inorganic phosphorus levels and a decrease in organic phosphorus levels compared to the WT + - The point mutation affected the pre-mRNA splicing and resulted in the exclusion of the fifth exon of IPK1. This disrupted the kinase and led to low phytic acid levels in Gm-lpa-ZC-2 +phenotype_synopsis: Involved in the conversion of InP5 into phytic acid +traits: + - entity_name: inositol-1,3,4,5,6-pentakisphosphate 2-kinase activity + entity: GO:0035299 + - entity_name: phosphorus content + entity: TO:0001024 +references: + - citation: Yuan, Zhao et al., 2007 + doi: 10.1007/s00122-007-0621-2 + pmid: 17701395 + - citation: Yuan, Zhu et al., 2012 + doi: 10.1007/s00122-012-1922-7 + pmid: 22733447