From 5468b1f3fb79765701300d947b2801b0fe781556 Mon Sep 17 00:00:00 2001
From: MarleneDH <136021077+MarleneDH@users.noreply.github.com>
Date: Mon, 4 Dec 2023 18:05:27 -0600
Subject: [PATCH] Create Wang_Yuan_2019.yml

This is the only paper I found discussing the role LCL genes in maintaining circadian rhythm, and it doesn't tease apart the roles of the four LCL genes discussed.
The authors tested the function of LCLb2 with transgenic expression and knockouts. They knocked out LCLa1, LCLa2, LCLb1, and LCLb2 all at once, so there is no way to distinguish them from each other.
Therefore, I have not included entries of LCLa1, LCLa2, and LCLb1.
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 Glycine/max/wip_marlene/Wang_Yuan_2019.yml | 23 ++++++++++++++++++++++
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 create mode 100644 Glycine/max/wip_marlene/Wang_Yuan_2019.yml

diff --git a/Glycine/max/wip_marlene/Wang_Yuan_2019.yml b/Glycine/max/wip_marlene/Wang_Yuan_2019.yml
new file mode 100644
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+gene_symbols:
+  - GmLCLb2
+gene_symbol_long: LHY/CCA1-like b2
+gene_model_pub_name: Glyma19g45030
+gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma19g45030
+confidence: 4
+curators:
+  - Marlene Dorneich-Hayes
+comments:
+  - Transgenic expression of LCLb2 shows that the gene maintains rhythmicity, is expressed most strongly at dawn, and is influenced by light/dark and temperature cycles.
+  - The circadian cycle speeds up when the transgenic plant is exposed to higher intensity red or blue light.
+  - Knockout of transcription factors LCLa1, LCLa2, LCLb1, and LCLb2 produces short circadian rhythms and delayed flowering time.
+  - GmLCL genes share homology with AtCCA1, AtLHY, and VrCCA1L26 genes (see Liu_Zhang_2022.yml)
+phenotype_synopsis: Positive regulation of circadian clock.
+traits:
+  - entity_name: transcription factor binding
+    entity: GO:0008134
+  - entity_name: positive regulation of circadian rhythm
+    entity: GO:0042753
+references:
+  - citation: Wang, Yuan, et. al., 2019
+    doi: 10.1111/pce.13678
+    pmid: 31724182