From da1debdd4a1f9c43e71552090e40c98c57336f17 Mon Sep 17 00:00:00 2001 From: Steven Cannon Date: Thu, 5 Dec 2024 11:28:24 -0600 Subject: [PATCH] Updated MANIFESTs for annotation collections, adding - jbrowse-index under applications: for gene_models_main --- .../CHECKSUM.BaileyII.gnm1.ann1.PQM7.md5 | 62 ++++++++-------- .../MANIFEST.BaileyII.gnm1.ann1.PQM7.yml | 1 + .../CHECKSUM.Tifrunner.gnm1.ann1.CCJH.md5 | 62 ++++++++-------- .../MANIFEST.Tifrunner.gnm1.ann1.CCJH.yml | 1 + .../CHECKSUM.Tifrunner.gnm2.ann1.4K0L.md5 | 3 +- .../MANIFEST.Tifrunner.gnm2.ann1.4K0L.yml | 1 + .../CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 | 66 ++++++++--------- .../MANIFEST.Tifrunner.gnm2.ann2.PVFB.yml | 1 + .../CHECKSUM.K30076.gnm1.ann1.J37m.md5 | 54 +++++++------- .../MANIFEST.K30076.gnm1.ann1.J37m.yml | 1 + .../CHECKSUM.V10309.gnm1.ann1.CZRZ.md5 | 4 +- .../MANIFEST.V10309.gnm1.ann1.CZRZ.yml | 1 + .../CHECKSUM.ICPL87119.gnm2.ann1.L3ZH.md5 | 59 ++++++++-------- .../MANIFEST.ICPL87119.gnm2.ann1.L3ZH.yml | 1 + .../CHECKSUM.ISC453364.gnm3.ann1.3N1M.md5 | 70 ++++++++++--------- .../MANIFEST.ISC453364.gnm3.ann1.3N1M.yml | 1 + .../CHECKSUM.GXIB.gnm1.ann1.L8L4.md5 | 3 +- .../MANIFEST.GXIB.gnm1.ann1.L8L4.yml | 1 + .../CHECKSUM.ISC494698.gnm1.ann1.G7XW.md5 | 3 +- .../MANIFEST.ISC494698.gnm1.ann1.G7XW.yml | 1 + .../CHECKSUM.CDCFrontier.gnm2.ann1.9M1L.md5 | 60 ++++++++-------- .../MANIFEST.CDCFrontier.gnm2.ann1.9M1L.yml | 1 + .../CHECKSUM.CDCFrontier.gnm3.ann1.NPD7.md5 | 24 ++++--- .../MANIFEST.CDCFrontier.gnm3.ann1.NPD7.yml | 1 + .../CHECKSUM.ICC4958.gnm2.ann1.LCVX.md5 | 2 +- .../MANIFEST.ICC4958.gnm2.ann1.LCVX.yml | 1 + .../CHECKSUM.S2Drd065.gnm1.ann1.YZ9H.md5 | 24 ++++--- .../MANIFEST.S2Drd065.gnm1.ann1.YZ9H.yml | 1 + .../CHECKSUM.Besev079.gnm1.ann1.F01Z.md5 | 24 ++++--- .../MANIFEST.Besev079.gnm1.ann1.F01Z.yml | 1 + .../CHECKSUM.IG_72815.gnm1.ann1.R90F.md5 | 40 ++++++----- .../MANIFEST.IG_72815.gnm1.ann1.R90F.yml | 1 + .../CHECKSUM.Tanjil.gnm1.ann1.nnV9.md5 | 2 +- .../MANIFEST.Tanjil.gnm1.ann1.nnV9.yml | 1 + .../CHECKSUM.A17.gnm5.ann1_6.L2RX.md5 | 48 +++++++------ .../MANIFEST.A17.gnm5.ann1_6.L2RX.yml | 1 + .../CHECKSUM.A17_HM341.gnm4.ann2.G3ZY.md5 | 58 +++++++-------- .../MANIFEST.A17_HM341.gnm4.ann2.G3ZY.yml | 1 + .../CHECKSUM.R108.gnmHiC_1.ann1.Y8NH.md5 | 3 +- .../MANIFEST.R108.gnmHiC_1.ann1.Y8NH.yml | 1 + .../CHECKSUM.R108_HM340.gnm1.ann1.85YW.md5 | 58 +++++++-------- .../MANIFEST.R108_HM340.gnm1.ann1.85YW.yml | 1 + .../CHECKSUM.W6_15578.gnm2.ann1.LVZ1.md5 | 58 +++++++-------- .../MANIFEST.W6_15578.gnm2.ann1.LVZ1.yml | 1 + .../CHECKSUM.PHA8298.gnm1.ann1.0Q14.md5 | 3 +- .../MANIFEST.PHA8298.gnm1.ann1.0Q14.yml | 1 + .../CHECKSUM.G27455.gnm1.ann1.JD7C.md5 | 5 +- .../MANIFEST.G27455.gnm1.ann1.JD7C.yml | 1 + .../CHECKSUM.5-593.gnm1.ann1.3FBJ.md5 | 62 ++++++++-------- .../MANIFEST.5-593.gnm1.ann1.3FBJ.yml | 1 + .../CHECKSUM.G19833.gnm1.ann1.pScz.md5 | 60 ++++++++-------- .../MANIFEST.G19833.gnm1.ann1.pScz.yml | 1 + .../CHECKSUM.G19833.gnm2.ann1.PB8d.md5 | 62 ++++++++-------- .../MANIFEST.G19833.gnm2.ann1.PB8d.yml | 1 + .../CHECKSUM.LaborOvalle.gnm1.ann1.L1DY.md5 | 60 ++++++++-------- .../MANIFEST.LaborOvalle.gnm1.ann1.L1DY.yml | 1 + .../CHECKSUM.UI111.gnm1.ann1.8L4N.md5 | 63 +++++++++-------- .../MANIFEST.UI111.gnm1.ann1.8L4N.yml | 1 + .../CHECKSUM.MilvusB.gnm2.ann1.DFgp.md5 | 2 +- .../MANIFEST.MilvusB.gnm2.ann1.DFgp.yml | 1 + .../CHECKSUM.Daliak.gnm2.ann1.MFKF.md5 | 60 ++++++++-------- .../MANIFEST.Daliak.gnm2.ann1.MFKF.yml | 1 + .../CHECKSUM.Tiffany.gnm1.ann1.Y54X.md5 | 2 +- .../MANIFEST.Tiffany.gnm1.ann1.Y54X.yml | 1 + .../CHECKSUM.HV-30.gnm1.ann1.6WFF.md5 | 3 +- .../MANIFEST.HV-30.gnm1.ann1.6WFF.yml | 1 + .../CHECKSUM.Shumari.gnm1.ann1.8BRS.md5 | 60 ++++++++-------- .../MANIFEST.Shumari.gnm1.ann1.8BRS.yml | 1 + .../CHECKSUM.VC1973A.gnm6.ann1.M1Qs.md5 | 42 +++++------ .../MANIFEST.VC1973A.gnm6.ann1.M1Qs.yml | 1 + .../CHECKSUM.VC1973A.gnm7.ann1.RWBG.md5 | 46 ++++++------ .../MANIFEST.VC1973A.gnm7.ann1.RWBG.yml | 1 + .../CHECKSUM.CB5-2.gnm1.ann1.0GKC.md5 | 54 +++++++------- .../MANIFEST.CB5-2.gnm1.ann1.0GKC.yml | 1 + .../CHECKSUM.IT97K-499-35.gnm1.ann1.zb5D.md5 | 63 +++++++++-------- .../MANIFEST.IT97K-499-35.gnm1.ann1.zb5D.yml | 1 + .../CHECKSUM.IT97K-499-35.gnm1.ann2.FD7K.md5 | 2 +- .../MANIFEST.IT97K-499-35.gnm1.ann2.FD7K.yml | 1 + .../CHECKSUM.Sanzi.gnm1.ann1.HFH8.md5 | 54 +++++++------- .../MANIFEST.Sanzi.gnm1.ann1.HFH8.yml | 1 + .../CHECKSUM.Suvita2.gnm1.ann1.1PF6.md5 | 54 +++++++------- .../MANIFEST.Suvita2.gnm1.ann1.1PF6.yml | 1 + .../CHECKSUM.TZ30.gnm1.ann2.59NL.md5 | 54 +++++++------- .../MANIFEST.TZ30.gnm1.ann2.59NL.yml | 1 + .../CHECKSUM.UCR779.gnm1.ann1.VF6G.md5 | 54 +++++++------- .../MANIFEST.UCR779.gnm1.ann1.VF6G.yml | 1 + .../CHECKSUM.Xiabao_II.gnm1.ann1.4JFL.md5 | 36 +++++----- .../MANIFEST.Xiabao_II.gnm1.ann1.4JFL.yml | 1 + .../CHECKSUM.ZN016.gnm1.ann2.C7YV.md5 | 54 +++++++------- .../MANIFEST.ZN016.gnm1.ann2.C7YV.yml | 1 + 90 files changed, 953 insertions(+), 834 deletions(-) diff --git a/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/CHECKSUM.BaileyII.gnm1.ann1.PQM7.md5 b/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/CHECKSUM.BaileyII.gnm1.ann1.PQM7.md5 index 1e23e1dd..0d4ecf77 100644 --- a/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/CHECKSUM.BaileyII.gnm1.ann1.PQM7.md5 +++ b/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/CHECKSUM.BaileyII.gnm1.ann1.PQM7.md5 @@ -1,30 +1,32 @@ -7a650d98a8790240aecdb0ddc7974dad Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz -a403aae1aff3b6b68730518767c2933f Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz.fai -cb0021062b330884ca517852d88aee18 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz.gzi -1edc1c6239049b74e490c7f06c9b7607 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz -4f3ea45a39352e256b707221996f8519 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz.fai -20af3147d82effa2a44e84236daa22f7 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz.gzi -5ab0441a4638cb21270a27b39a7b3f51 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.featid_map.tsv.gz -e045e8b131cd033a98485fe4c61eb099 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.bed.gz -a6ffec860c443b1c1992e752e5eac43d Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.bed.gz.tbi -eb85e3881396036eb05d0ab5fe6dfc53 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.gff3.gz -8b5dcaea58e26c128630648733e7a296 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.gff3.gz.tbi -4ce4998ed242ec712a47a499607c67d4 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.iprscan.gff3.gz -c8af7ea9a8e0bac4d70b4a23276cd357 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.iprscan.gff3.gz.tbi -4e6397cc727b3e3f0555dc915de263fd Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.legfed_v1_0.M65K.gfa.tsv.gz -2d54a7d217f808791905ed31a7a4275c Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.mrna_primary.fna.gz -2aee8f192d394d54fcb2fafd210a4bdf Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.mrna_primary.fna.gz.fai -f31ab431e5f847deb3409d7736604be6 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.mrna_primary.fna.gz.gzi -6ad8e897bc572391e5bbac140fd33764 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz -5648897603173e5c4b57e7613fba9e73 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz.fai -02dbedc18815323e30eec595fa556563 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz.gzi -96867c1af810c3d3cb0ea487f2cacf96 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.protein_primary.faa.gz -05cc37eaaafae25c1d05f8433694b74b Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.protein_primary.faa.gz.fai -10b11b555c4e324549a9f4ba3e2455c5 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.protein_primary.faa.gz.gzi -42c355ec74fb824577b110ba271effdb Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.protein.faa.gz -c7d02a9f65f3c817de73275bf6e05192 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.protein.faa.gz.fai -cf4d8036b1093eae9b2a7615ab720a8b Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.protein.faa.gz.gzi -ecf9ffb317f0001d66c20d3215d74ff6 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/CHANGES.BaileyII.gnm1.ann1.PQM7.txt -7598061dbaf537149cadb3ba40f607a0 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/MANIFEST.BaileyII.gnm1.ann1.PQM7.correspondence.yml -419d9bcc64228dbe31768e4388386267 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/MANIFEST.BaileyII.gnm1.ann1.PQM7.descriptions.yml -6fa6d30adb7fbd5f1abd51d0924e1a08 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/README.BaileyII.gnm1.ann1.PQM7.yml +4ce4998ed242ec712a47a499607c67d4 ./arahy.BaileyII.gnm1.ann1.PQM7.iprscan.gff3.gz +a6ffec860c443b1c1992e752e5eac43d ./arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.bed.gz.tbi +c8af7ea9a8e0bac4d70b4a23276cd357 ./arahy.BaileyII.gnm1.ann1.PQM7.iprscan.gff3.gz.tbi +05cc37eaaafae25c1d05f8433694b74b ./arahy.BaileyII.gnm1.ann1.PQM7.protein_primary.faa.gz.fai +4e6397cc727b3e3f0555dc915de263fd ./arahy.BaileyII.gnm1.ann1.PQM7.legfed_v1_0.M65K.gfa.tsv.gz +4f3ea45a39352e256b707221996f8519 ./arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz.fai +5ab0441a4638cb21270a27b39a7b3f51 ./arahy.BaileyII.gnm1.ann1.PQM7.featid_map.tsv.gz +cf4d8036b1093eae9b2a7615ab720a8b ./arahy.BaileyII.gnm1.ann1.PQM7.protein.faa.gz.gzi +5648897603173e5c4b57e7613fba9e73 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz.fai +ecf9ffb317f0001d66c20d3215d74ff6 ./CHANGES.BaileyII.gnm1.ann1.PQM7.txt +8b5dcaea58e26c128630648733e7a296 ./arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.gff3.gz.tbi +96867c1af810c3d3cb0ea487f2cacf96 ./arahy.BaileyII.gnm1.ann1.PQM7.protein_primary.faa.gz +6ad8e897bc572391e5bbac140fd33764 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz +cb0021062b330884ca517852d88aee18 ./arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz.gzi +2aee8f192d394d54fcb2fafd210a4bdf ./arahy.BaileyII.gnm1.ann1.PQM7.mrna_primary.fna.gz.fai +1edc1c6239049b74e490c7f06c9b7607 ./arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz +f31ab431e5f847deb3409d7736604be6 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna_primary.fna.gz.gzi +e045e8b131cd033a98485fe4c61eb099 ./arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.bed.gz +7a650d98a8790240aecdb0ddc7974dad ./arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz +a0b354f8ee9f5fa7fba39a910424eb86 ./MANIFEST.BaileyII.gnm1.ann1.PQM7.yml +a403aae1aff3b6b68730518767c2933f ./arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz.fai +02dbedc18815323e30eec595fa556563 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz.gzi +2d54a7d217f808791905ed31a7a4275c ./arahy.BaileyII.gnm1.ann1.PQM7.mrna_primary.fna.gz +eb85e3881396036eb05d0ab5fe6dfc53 ./arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.gff3.gz +20af3147d82effa2a44e84236daa22f7 ./arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz.gzi +c7d02a9f65f3c817de73275bf6e05192 ./arahy.BaileyII.gnm1.ann1.PQM7.protein.faa.gz.fai +42c355ec74fb824577b110ba271effdb ./arahy.BaileyII.gnm1.ann1.PQM7.protein.faa.gz +6fa6d30adb7fbd5f1abd51d0924e1a08 ./README.BaileyII.gnm1.ann1.PQM7.yml +10b11b555c4e324549a9f4ba3e2455c5 ./arahy.BaileyII.gnm1.ann1.PQM7.protein_primary.faa.gz.gzi +43a44f4e17df10c20583de776b8388b9 ./BUSCO/arahy.BaileyII.gnm1.ann1.PQM7.busco.fabales_odb10.full_table.tsv.gz +f107c0523dad3cc6afd56483b365f876 ./BUSCO/arahy.BaileyII.gnm1.ann1.PQM7.busco.fabales_odb10.short_summary.txt +a9bd2c5549a4fae499d530b5d54ebbaf ./BUSCO/arahy.BaileyII.gnm1.ann1.PQM7.busco.fabales_odb10.short_summary.json diff --git a/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/MANIFEST.BaileyII.gnm1.ann1.PQM7.yml b/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/MANIFEST.BaileyII.gnm1.ann1.PQM7.yml index e45706dc..759d1ffc 100644 --- a/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/MANIFEST.BaileyII.gnm1.ann1.PQM7.yml +++ b/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/MANIFEST.BaileyII.gnm1.ann1.PQM7.yml @@ -18,6 +18,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - arahy.BaileyII.mRNA_ID.gff3.gz - name: arahy.BaileyII.gnm1.ann1.PQM7.iprscan.gff3.gz diff --git a/Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/CHECKSUM.Tifrunner.gnm1.ann1.CCJH.md5 b/Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/CHECKSUM.Tifrunner.gnm1.ann1.CCJH.md5 index b5718bc0..862efb0e 100644 --- a/Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/CHECKSUM.Tifrunner.gnm1.ann1.CCJH.md5 +++ b/Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/CHECKSUM.Tifrunner.gnm1.ann1.CCJH.md5 @@ -1,30 +1,32 @@ -a0cba8d5a5cb6668ae587c38ba957f9a Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.cds_primary.fna.gz -cb05ce0b6dc7efe106c3cfeb56034f52 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.cds_primary.fna.gz.fai -ecf2f00de25ac90d655154b94e81d5b0 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.cds_primary.fna.gz.gzi -559e25e40c89c9e09815fb9b81429a21 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.cds.fna.gz -aae96b2ee3a2ff0e05e5732cc5fb73c9 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.cds.fna.gz.fai -c5b324a5fe4906a413700beccbcefd4e Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.cds.fna.gz.gzi -64f71965e28efeed70d8766cad6609cf Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.gene_models_main.bed.gz -406c9b8ee52004b4c159eaea4d74c22f Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.gene_models_main.bed.gz.tbi -3c2a623df7514c15ae8e1942cbe0eda2 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.gene_models_main.gff3.gz -b127158248927b7ea5d7688be31262f1 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.gene_models_main.gff3.gz.tbi -79911ec340075cba2a564ed127f8df10 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.info_descriptors.txt.gz -9bdcf2d75e130e2b6953a6c6e66c0215 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.legfed_v1_0.M65K.gfa.tsv.gz -79b2e541bd8449d9f909944ef68a2a95 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.mrna_primary.fna.gz -d8a0ad1695f4c3083d8c26a12e32390a Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.mrna_primary.fna.gz.fai -d96a7201c506c17cd3b7472a368b4ed3 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.mrna_primary.fna.gz.gzi -1bd0b676632b047795b2afb908ca14e7 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.mrna.fna.gz -49794fc20357eeb10586500ee4b25d47 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.mrna.fna.gz.fai -373d9ed2e551f872abd377aa2c69d05c Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.mrna.fna.gz.gzi -98172e46bd7cb30f31cee9fa485c5dcd Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.protein_primary.faa.gz -78a5c1dd71f15f66e146c80ab1e11490 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.protein_primary.faa.gz.fai -706f7240dc9ca53ddc2c7b1ed9072e9b Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.protein_primary.faa.gz.gzi -301c6c5608801c4cbf8d1ed65cc77227 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.protein.faa.gz -59cf0c0faa152f06afbfe0240f55e38f Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.protein.faa.gz.fai -ea1247118b6bc4aa297f9fafbd925e20 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.protein.faa.gz.gzi -1d94a15364388b7d942e2620e2d4e1d3 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.repeats_complex.gff3.gz -35271d82fa8fa8363f40db887d1057df Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/arahy.Tifrunner.gnm1.ann1.CCJH.repeats_complex.gff3.gz.tbi -8222d22e363fbad72bcbb2abace03401 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/CHANGES.Tifrunner.gnm1.ann1.CCJH.txt -d17ffb9d7abe61bb585163bf0a6a47d9 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/MANIFEST.Tifrunner.gnm1.ann1.CCJH.correspondence.yml -9826ffbc326a17cf1c094be54f49a76e Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/MANIFEST.Tifrunner.gnm1.ann1.CCJH.descriptions.yml -4a93a0b52c6be2b608dbed096b838004 Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/README.Tifrunner.gnm1.ann1.CCJH.yml +4a93a0b52c6be2b608dbed096b838004 ./README.Tifrunner.gnm1.ann1.CCJH.yml +cb05ce0b6dc7efe106c3cfeb56034f52 ./arahy.Tifrunner.gnm1.ann1.CCJH.cds_primary.fna.gz.fai +406c9b8ee52004b4c159eaea4d74c22f ./arahy.Tifrunner.gnm1.ann1.CCJH.gene_models_main.bed.gz.tbi +79b2e541bd8449d9f909944ef68a2a95 ./arahy.Tifrunner.gnm1.ann1.CCJH.mrna_primary.fna.gz +559e25e40c89c9e09815fb9b81429a21 ./arahy.Tifrunner.gnm1.ann1.CCJH.cds.fna.gz +b127158248927b7ea5d7688be31262f1 ./arahy.Tifrunner.gnm1.ann1.CCJH.gene_models_main.gff3.gz.tbi +9bdcf2d75e130e2b6953a6c6e66c0215 ./arahy.Tifrunner.gnm1.ann1.CCJH.legfed_v1_0.M65K.gfa.tsv.gz +aae96b2ee3a2ff0e05e5732cc5fb73c9 ./arahy.Tifrunner.gnm1.ann1.CCJH.cds.fna.gz.fai +49794fc20357eeb10586500ee4b25d47 ./arahy.Tifrunner.gnm1.ann1.CCJH.mrna.fna.gz.fai +79911ec340075cba2a564ed127f8df10 ./arahy.Tifrunner.gnm1.ann1.CCJH.info_descriptors.txt.gz +3c2a623df7514c15ae8e1942cbe0eda2 ./arahy.Tifrunner.gnm1.ann1.CCJH.gene_models_main.gff3.gz +78a5c1dd71f15f66e146c80ab1e11490 ./arahy.Tifrunner.gnm1.ann1.CCJH.protein_primary.faa.gz.fai +8f9bc1f99e0b98619ff65e15cf9aa493 ./MANIFEST.Tifrunner.gnm1.ann1.CCJH.yml +ea1247118b6bc4aa297f9fafbd925e20 ./arahy.Tifrunner.gnm1.ann1.CCJH.protein.faa.gz.gzi +64f71965e28efeed70d8766cad6609cf ./arahy.Tifrunner.gnm1.ann1.CCJH.gene_models_main.bed.gz +d96a7201c506c17cd3b7472a368b4ed3 ./arahy.Tifrunner.gnm1.ann1.CCJH.mrna_primary.fna.gz.gzi +185c458ea13109c81eb0d8638bc1b1ef ./BUSCO/arahy.Tifrunner.gnm1.ann1.CCJH.busco.fabales_odb10.full_table.tsv.gz +5f2a73affb954e91e7a42ff115edf8da ./BUSCO/arahy.Tifrunner.gnm1.ann1.CCJH.busco.fabales_odb10.short_summary.txt +abdc1487c61c45db6d8f8a79725c762a ./BUSCO/arahy.Tifrunner.gnm1.ann1.CCJH.busco.fabales_odb10.short_summary.json +1bd0b676632b047795b2afb908ca14e7 ./arahy.Tifrunner.gnm1.ann1.CCJH.mrna.fna.gz +59cf0c0faa152f06afbfe0240f55e38f ./arahy.Tifrunner.gnm1.ann1.CCJH.protein.faa.gz.fai +d8a0ad1695f4c3083d8c26a12e32390a ./arahy.Tifrunner.gnm1.ann1.CCJH.mrna_primary.fna.gz.fai +706f7240dc9ca53ddc2c7b1ed9072e9b ./arahy.Tifrunner.gnm1.ann1.CCJH.protein_primary.faa.gz.gzi +35271d82fa8fa8363f40db887d1057df ./arahy.Tifrunner.gnm1.ann1.CCJH.repeats_complex.gff3.gz.tbi +a0cba8d5a5cb6668ae587c38ba957f9a ./arahy.Tifrunner.gnm1.ann1.CCJH.cds_primary.fna.gz +1d94a15364388b7d942e2620e2d4e1d3 ./arahy.Tifrunner.gnm1.ann1.CCJH.repeats_complex.gff3.gz +8222d22e363fbad72bcbb2abace03401 ./CHANGES.Tifrunner.gnm1.ann1.CCJH.txt +373d9ed2e551f872abd377aa2c69d05c ./arahy.Tifrunner.gnm1.ann1.CCJH.mrna.fna.gz.gzi +c5b324a5fe4906a413700beccbcefd4e ./arahy.Tifrunner.gnm1.ann1.CCJH.cds.fna.gz.gzi +98172e46bd7cb30f31cee9fa485c5dcd ./arahy.Tifrunner.gnm1.ann1.CCJH.protein_primary.faa.gz +301c6c5608801c4cbf8d1ed65cc77227 ./arahy.Tifrunner.gnm1.ann1.CCJH.protein.faa.gz +ecf2f00de25ac90d655154b94e81d5b0 ./arahy.Tifrunner.gnm1.ann1.CCJH.cds_primary.fna.gz.gzi diff --git a/Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/MANIFEST.Tifrunner.gnm1.ann1.CCJH.yml b/Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/MANIFEST.Tifrunner.gnm1.ann1.CCJH.yml index c99c086a..eefa4d53 100644 --- a/Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/MANIFEST.Tifrunner.gnm1.ann1.CCJH.yml +++ b/Arachis/hypogaea/annotations/Tifrunner.gnm1.ann1.CCJH/MANIFEST.Tifrunner.gnm1.ann1.CCJH.yml @@ -12,6 +12,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: arahy.Tifrunner.gnm1.ann1.CCJH.info_descriptors.txt.gz description: MISSING - name: arahy.Tifrunner.gnm1.ann1.CCJH.legfed_v1_0.M65K.gfa.tsv.gz diff --git a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann1.4K0L/CHECKSUM.Tifrunner.gnm2.ann1.4K0L.md5 b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann1.4K0L/CHECKSUM.Tifrunner.gnm2.ann1.4K0L.md5 index cb710def..41d877f9 100644 --- a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann1.4K0L/CHECKSUM.Tifrunner.gnm2.ann1.4K0L.md5 +++ b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann1.4K0L/CHECKSUM.Tifrunner.gnm2.ann1.4K0L.md5 @@ -1,6 +1,6 @@ -5d7a047c51cae06d643ed0b77b874805 ./MANIFEST.Tifrunner.gnm2.ann1.4K0L.correspondence.yml b28b4429681ce4a448c480db65c0dfa0 ./arahy.Tifrunner.gnm2.ann1.4K0L.info_fwd_chain.txt.gz 0eaa66669d73f29687a45858b9ea52dc ./arahy.Tifrunner.gnm2.ann1.4K0L.info_descriptors.txt.gz +6457420e51c01e77cab3f1ee9b3b41bd ./MANIFEST.Tifrunner.gnm2.ann1.4K0L.yml 436abe8e353739e0b714b4a076763966 ./arahy.Tifrunner.gnm2.ann1.4K0L.info_unmapped_models.txt.gz 462b6013453e67913a2268728c60977b ./arahy.Tifrunner.gnm2.ann1.4K0L.cds.fna.gz.fai 3dcc6c8ac442255658655cfe080d83c1 ./arahy.Tifrunner.gnm2.ann1.4K0L.mrna.fna.gz.fai @@ -46,7 +46,6 @@ fb34c554edf484e0317def28366dbd67 ./arahy.Tifrunner.gnm2.ann1.4K0L.legfed_v1_0.M 164822fc5d3924941254504bd52b5c22 ./BUSCO/arahy.Tifrunner.gnm2.ann1.4K0L.busco.fabales_odb10.full_table.tsv.gz 4441ab10d195c9e57ee7cac9acec4a07 ./BUSCO/arahy.Tifrunner.gnm2.ann1.4K0L.busco.fabales_odb10.short_summary.json c183edfcfb2f8f747b3a1afa257f26c8 ./BUSCO/arahy.Tifrunner.gnm2.ann1.4K0L.busco.fabales_odb10.short_summary.txt -3a1c34fbd9db5cd0ab0434265ed9996a ./MANIFEST.Tifrunner.gnm2.ann1.4K0L.descriptions.yml 13f4d177c6eaa7b1d430eda13325450e ./arahy.Tifrunner.gnm2.ann1.4K0L.protein.faa.gz 7b037421be2f30d280d5b5f333256ce1 ./arahy.Tifrunner.gnm2.ann1.4K0L.protein.faa.gz.fai 12c8f8f0565eccdff994db6ec94f9606 ./arahy.Tifrunner.gnm2.ann1.4K0L.cds.fna.gz.gzi diff --git a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann1.4K0L/MANIFEST.Tifrunner.gnm2.ann1.4K0L.yml b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann1.4K0L/MANIFEST.Tifrunner.gnm2.ann1.4K0L.yml index 519a3c7c..1e7eb56d 100644 --- a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann1.4K0L/MANIFEST.Tifrunner.gnm2.ann1.4K0L.yml +++ b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann1.4K0L/MANIFEST.Tifrunner.gnm2.ann1.4K0L.yml @@ -14,6 +14,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - arahy.Tifrunner.gnm1.ann1.CCJH.gene_models_main.gff3 mapped into gnm2 - name: arahy.Tifrunner.gnm2.ann1.4K0L.info_descriptors.txt.gz diff --git a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 index 87e66a0e..c5014965 100644 --- a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 +++ b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 @@ -1,32 +1,34 @@ -86aa9c488206a4fff4cd9d24a918d247 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz -b21a21082fce168ebf72bcc22c03e93f Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz.fai -ae47baad0a228ba413944965af18e073 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz.gzi -e1d0a1c3ed6ba6803d83d2ec1d3ef89e Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.cds.fna.gz -a24e1751710154b1536b8edb8e458656 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.cds.fna.gz.fai -1dec423f22ba8c8badb72f0f7edf9621 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.cds.fna.gz.gzi -d33ed45b5d9ac633cbda2ce7534caa8b Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.featid_map.tsv.gz -c77e88ff69a20fdef11231b1a6541971 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_lowqual.gff3.gz -df4085fb64f6de082c7b754ee391029b Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_lowqual.gff3.gz.tbi -393d2d82969c2d7642b004c541136bcb Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.bed.gz -2eab2fc3b9072e194520bfc1b2c0c19a Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.bed.gz.tbi -0ff63f981b328fd531d77776ba825d62 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.gff3.gz -a41826b12f6a36bf83bbebb89ba7c211 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.gff3.gz.tbi -9e1bf4bc9cbf4d6a07b4a6bb367468ae Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.iprscan.gff3.gz -526963a6f12662d09551014d6a8c07e9 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.iprscan.gff3.gz.tbi -c9f66ab47f925f756b383e1b9cba87ae Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.legfed_v1_0.M65K.gfa.tsv.gz -0e2fba5a5720f384b8119b658e7178da Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.mrna_lowqual.fna.gz -b78de65b05bc80a5cb7264ad13b2ec3c Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.mrna_lowqual.fna.gz.fai -3f1774a04664c6535c4c1af4d2c41ba4 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.mrna_lowqual.fna.gz.gzi -11b02e1c204ab27610e95078f8b6bc7b Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.mrna.fna.gz -d17728cc393fd58f1121dca958034063 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.mrna.fna.gz.fai -0eda55ea32630283e27634e228c54a2e Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.mrna.fna.gz.gzi -3621003e797ac7011738e451848d2acd Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz -773fe4fc96ceb3569e5b7eb14c291a04 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz.fai -27f1299574992abeec3c2bd59c10cdac Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz.gzi -22a4e77f70e3777b035c12d05e20fde7 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa.gz -a2d800f1a63197a074d280952910ed56 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa.gz.fai -f01eeb8191925d71424ddc48dd9e6cf3 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa.gz.gzi -35c6c57f8ee3f32f44afd2e58911de37 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHANGES.Tifrunner.gnm2.ann2.PVFB.txt -6c0f0d5f7ecec19da1cc174d378cce02 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/MANIFEST.Tifrunner.gnm2.ann2.PVFB.correspondence.yml -683c05e2e08c2132a18832a80185107c Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/MANIFEST.Tifrunner.gnm2.ann2.PVFB.descriptions.yml -43319e3bff849f45a6a12880e986e4e0 Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/README.Tifrunner.gnm2.ann2.PVFB.yml +0ff63f981b328fd531d77776ba825d62 ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.gff3.gz +a24e1751710154b1536b8edb8e458656 ./arahy.Tifrunner.gnm2.ann2.PVFB.cds.fna.gz.fai +9e1bf4bc9cbf4d6a07b4a6bb367468ae ./arahy.Tifrunner.gnm2.ann2.PVFB.iprscan.gff3.gz +d0527266b4bffa31e8250da7c2109b48 ./MANIFEST.Tifrunner.gnm2.ann2.PVFB.yml +b78de65b05bc80a5cb7264ad13b2ec3c ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna_lowqual.fna.gz.fai +ae47baad0a228ba413944965af18e073 ./arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz.gzi +43319e3bff849f45a6a12880e986e4e0 ./README.Tifrunner.gnm2.ann2.PVFB.yml +e1d0a1c3ed6ba6803d83d2ec1d3ef89e ./arahy.Tifrunner.gnm2.ann2.PVFB.cds.fna.gz +f01eeb8191925d71424ddc48dd9e6cf3 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa.gz.gzi +0e2fba5a5720f384b8119b658e7178da ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna_lowqual.fna.gz +773fe4fc96ceb3569e5b7eb14c291a04 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz.fai +3621003e797ac7011738e451848d2acd ./arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz +d17728cc393fd58f1121dca958034063 ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna.fna.gz.fai +35c6c57f8ee3f32f44afd2e58911de37 ./CHANGES.Tifrunner.gnm2.ann2.PVFB.txt +86aa9c488206a4fff4cd9d24a918d247 ./arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz +393d2d82969c2d7642b004c541136bcb ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.bed.gz +0eda55ea32630283e27634e228c54a2e ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna.fna.gz.gzi +df4085fb64f6de082c7b754ee391029b ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_lowqual.gff3.gz.tbi +27f1299574992abeec3c2bd59c10cdac ./arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz.gzi +d33ed45b5d9ac633cbda2ce7534caa8b ./arahy.Tifrunner.gnm2.ann2.PVFB.featid_map.tsv.gz +b21a21082fce168ebf72bcc22c03e93f ./arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz.fai +c9f66ab47f925f756b383e1b9cba87ae ./arahy.Tifrunner.gnm2.ann2.PVFB.legfed_v1_0.M65K.gfa.tsv.gz +3f1774a04664c6535c4c1af4d2c41ba4 ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna_lowqual.fna.gz.gzi +2eab2fc3b9072e194520bfc1b2c0c19a ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.bed.gz.tbi +a2d800f1a63197a074d280952910ed56 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa.gz.fai +a41826b12f6a36bf83bbebb89ba7c211 ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.gff3.gz.tbi +d4d3c22f533a3805056949bf31b97016 ./BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.short_summary.json +dd178b9401c214e445db7fa997db60b4 ./BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.full_table.tsv.gz +77d2ebeaaf850c63eade93bd8931b5c8 ./BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.short_summary.txt +11b02e1c204ab27610e95078f8b6bc7b ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna.fna.gz +1dec423f22ba8c8badb72f0f7edf9621 ./arahy.Tifrunner.gnm2.ann2.PVFB.cds.fna.gz.gzi +22a4e77f70e3777b035c12d05e20fde7 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa.gz +526963a6f12662d09551014d6a8c07e9 ./arahy.Tifrunner.gnm2.ann2.PVFB.iprscan.gff3.gz.tbi +c77e88ff69a20fdef11231b1a6541971 ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_lowqual.gff3.gz diff --git a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/MANIFEST.Tifrunner.gnm2.ann2.PVFB.yml b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/MANIFEST.Tifrunner.gnm2.ann2.PVFB.yml index 44770e90..f41b360d 100644 --- a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/MANIFEST.Tifrunner.gnm2.ann2.PVFB.yml +++ b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/MANIFEST.Tifrunner.gnm2.ann2.PVFB.yml @@ -20,6 +20,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - arahy.Tifrunner.gnm2.ann2.gene_models_bare.gff3.gz - name: arahy.Tifrunner.gnm2.ann2.PVFB.iprscan.gff3.gz diff --git a/Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/CHECKSUM.K30076.gnm1.ann1.J37m.md5 b/Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/CHECKSUM.K30076.gnm1.ann1.J37m.md5 index 4fb9f5a1..eb02afef 100644 --- a/Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/CHECKSUM.K30076.gnm1.ann1.J37m.md5 +++ b/Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/CHECKSUM.K30076.gnm1.ann1.J37m.md5 @@ -1,26 +1,28 @@ -64e48615a707b7e2805a4670df36855c Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.cds.fna.gz -ffc89ec803de489f920cabe70389bd3d Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.cds.fna.gz.fai -9d148a6f3875c3023eb16c50b16b665d Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.cds.fna.gz.gzi -2f44846f0fb3aceadeccdd77aa6f2271 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.gene_models_main.bed.gz -7298d49b4db566617b2001518028330f Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.gene_models_main.bed.gz.tbi -6de299bcafa58fa1081bd78ab8465c74 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.gene_models_main.gff3.gz -96613a6e5368c6ed6ead335cf0ff8599 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.gene_models_main.gff3.gz.tbi -bb879e3fa600b00252dae8abaeb84cc6 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.genemodels_lowqual_or_TE.gff.gz -a03d4f1b282a010291cb323f86339779 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.info_AED_scores.txt.gz -deb9e4680ae53ff812798689c51a12e7 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.info_annot_AHRD_slim.txt.gz -2c28f6152e6620e1d17a2598608e7598 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.info_annot_AHRD.txt.gz -b3896b0ca4fc9aff8f4faf83b8704596 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.legfed_v1_0.M65K.gfa.tsv.gz -ea505c6c177054e3465315081f27fab2 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.mrna_lowqual_or_TE.fna.gz -c15791ac1e9695219f606075399bd0ce Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.mrna.fna.gz -cccf68802eebfbacd166722cd5e57526 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.mrna.fna.gz.fai -3bc5541dec4280eb0ff7a2be28f97023 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.mrna.fna.gz.gzi -cf04c409255b943367523ae470ebbe8d Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.protein_lowqual_or_TE.faa.gz -cc1087e47fef833032fbab1eaaf54cca Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.protein.faa.gz -f5a5e916765bee840ca8ac389905e54f Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.protein.faa.gz.fai -59c0d233738d54750a299d23cc5d1470 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.protein.faa.gz.gzi -bde144e5b4f461c53fdbecaad5b60454 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/CHANGES.K30076.gnm1.ann1.J37m.txt -66bd2ab322df59673312986592ccf805 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/MANIFEST.K30076.gnm1.ann1.J37m.correspondence.yml -dabdcf94959c79d8eb680f7b1bde165e Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/MANIFEST.K30076.gnm1.ann1.J37m.descriptions.yml -afc21a1c72a656289e2737273fd75008 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/original_gene_naming_scheme.txt -1e7d9199736100243a64920e7e73b208 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/original_usage_agreement.txt -d20397e9a1e84515e354cf6c6c12c735 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/README.K30076.gnm1.ann1.J37m.yml +deb9e4680ae53ff812798689c51a12e7 ./araip.K30076.gnm1.ann1.J37m.info_annot_AHRD_slim.txt.gz +bb879e3fa600b00252dae8abaeb84cc6 ./araip.K30076.gnm1.ann1.J37m.gene_models_lowqual_or_TE.gff.gz +7298d49b4db566617b2001518028330f ./araip.K30076.gnm1.ann1.J37m.gene_models_main.bed.gz.tbi +b3896b0ca4fc9aff8f4faf83b8704596 ./araip.K30076.gnm1.ann1.J37m.legfed_v1_0.M65K.gfa.tsv.gz +3bc5541dec4280eb0ff7a2be28f97023 ./araip.K30076.gnm1.ann1.J37m.mrna.fna.gz.gzi +64e48615a707b7e2805a4670df36855c ./araip.K30076.gnm1.ann1.J37m.cds.fna.gz +a03d4f1b282a010291cb323f86339779 ./araip.K30076.gnm1.ann1.J37m.info_AED_scores.txt.gz +59c0d233738d54750a299d23cc5d1470 ./araip.K30076.gnm1.ann1.J37m.protein.faa.gz.gzi +2c28f6152e6620e1d17a2598608e7598 ./araip.K30076.gnm1.ann1.J37m.info_annot_AHRD.txt.gz +ffc89ec803de489f920cabe70389bd3d ./araip.K30076.gnm1.ann1.J37m.cds.fna.gz.fai +ea505c6c177054e3465315081f27fab2 ./araip.K30076.gnm1.ann1.J37m.mrna_lowqual_or_TE.fna.gz +cc1087e47fef833032fbab1eaaf54cca ./araip.K30076.gnm1.ann1.J37m.protein.faa.gz +cf04c409255b943367523ae470ebbe8d ./araip.K30076.gnm1.ann1.J37m.protein_lowqual_or_TE.faa.gz +bde144e5b4f461c53fdbecaad5b60454 ./CHANGES.K30076.gnm1.ann1.J37m.txt +9d148a6f3875c3023eb16c50b16b665d ./araip.K30076.gnm1.ann1.J37m.cds.fna.gz.gzi +6de299bcafa58fa1081bd78ab8465c74 ./araip.K30076.gnm1.ann1.J37m.gene_models_main.gff3.gz +49c3b2c46ba7f4ab4f0b232e4116ab8b ./BUSCO/araip.K30076.gnm1.ann1.J37m.busco.fabales_odb10.full_table.tsv.gz +eac82e746cc79dc430fd4b2def2ab026 ./BUSCO/araip.K30076.gnm1.ann1.J37m.busco.fabales_odb10.short_summary.txt +363db34519e42d3ee0e2369aa9c102f9 ./BUSCO/araip.K30076.gnm1.ann1.J37m.busco.fabales_odb10.short_summary.json +d20397e9a1e84515e354cf6c6c12c735 ./README.K30076.gnm1.ann1.J37m.yml +f5a5e916765bee840ca8ac389905e54f ./araip.K30076.gnm1.ann1.J37m.protein.faa.gz.fai +1e7d9199736100243a64920e7e73b208 ./original_usage_agreement.txt +c15791ac1e9695219f606075399bd0ce ./araip.K30076.gnm1.ann1.J37m.mrna.fna.gz +2f44846f0fb3aceadeccdd77aa6f2271 ./araip.K30076.gnm1.ann1.J37m.gene_models_main.bed.gz +96613a6e5368c6ed6ead335cf0ff8599 ./araip.K30076.gnm1.ann1.J37m.gene_models_main.gff3.gz.tbi +604af8d3af369029f74071b0760be1bf ./MANIFEST.K30076.gnm1.ann1.J37m.yml +cccf68802eebfbacd166722cd5e57526 ./araip.K30076.gnm1.ann1.J37m.mrna.fna.gz.fai +afc21a1c72a656289e2737273fd75008 ./original_gene_naming_scheme.txt diff --git a/Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/MANIFEST.K30076.gnm1.ann1.J37m.yml b/Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/MANIFEST.K30076.gnm1.ann1.J37m.yml index 00c8334c..b40b3b87 100644 --- a/Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/MANIFEST.K30076.gnm1.ann1.J37m.yml +++ b/Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/MANIFEST.K30076.gnm1.ann1.J37m.yml @@ -14,6 +14,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: araip.K30076.gnm1.ann1.J37m.info_AED_scores.txt.gz description: MAKER quality scores prior_names: diff --git a/Arachis/stenosperma/annotations/V10309.gnm1.ann1.CZRZ/CHECKSUM.V10309.gnm1.ann1.CZRZ.md5 b/Arachis/stenosperma/annotations/V10309.gnm1.ann1.CZRZ/CHECKSUM.V10309.gnm1.ann1.CZRZ.md5 index c296a354..48363844 100644 --- a/Arachis/stenosperma/annotations/V10309.gnm1.ann1.CZRZ/CHECKSUM.V10309.gnm1.ann1.CZRZ.md5 +++ b/Arachis/stenosperma/annotations/V10309.gnm1.ann1.CZRZ/CHECKSUM.V10309.gnm1.ann1.CZRZ.md5 @@ -1,7 +1,5 @@ -a8f412885562d87dba786c5be90a8f61 ./MANIFEST.V10309.gnm1.ann1.CZRZ.correspondence.yml eda55f5338e87e6bb81252987529f111 ./arast.V10309.gnm1.ann1.CZRZ.protein.faa.gz.gzi 6aaa20ac9c839356d99a762bd302de7d ./arast.V10309.gnm1.ann1.CZRZ.gene_models_main.gff3.gz.tbi -8cf9af0c88633135830829701149e352 ./.arast.V10309.gnm1.ann1.CZRZ.gene_models_main.gff3.gz.swp 04a8760dde9ea7427cd141b323068b63 ./arast.V10309.gnm1.ann1.CZRZ.legfed_v1_0.M65K.gfa.tsv.gz 08b0df71a91663ad547ac82f608eddff ./arast.V10309.gnm1.ann1.CZRZ.gene_models_main.bed.gz f95e353c13f20e82de8c5e878af05515 ./CHANGES.V10309.gnm1.ann1.CZRZ.txt @@ -26,7 +24,7 @@ e8e0e073d8ac487463f244d2a4869ad0 ./arast.V10309.gnm1.ann1.CZRZ.protein.faa.gz b46b2a0a980261bb7fcf6a9ba6789f38 ./arast.V10309.gnm1.ann1.CZRZ.gene_models_main.gff3.gz 66a716284ec425711fddd74f781fd105 ./arast.V10309.gnm1.ann1.CZRZ.mrna_primary.fna.gz.fai 1fbda3faf11cf44d3abe10015f1b2a49 ./arast.V10309.gnm1.ann1.CZRZ.mrna.fna.gz.fai -6f1b846c9f69d3c4dd10f160b5e4b805 ./MANIFEST.V10309.gnm1.ann1.CZRZ.descriptions.yml +d2a28cb27f2cb35cc8a5a4edaf3e96cd ./MANIFEST.V10309.gnm1.ann1.CZRZ.yml a91b7d0830f948d4eed650d2631927c5 ./arast.V10309.gnm1.ann1.CZRZ.noncoding.gff3.gz 19afdd5048b189affb0267b1bbc73664 ./arast.V10309.gnm1.ann1.CZRZ.protein.faa.gz.fai ab2f37a7a427be0b47b5923c11b91e8f ./arast.V10309.gnm1.ann1.CZRZ.cds.fna.gz diff --git a/Arachis/stenosperma/annotations/V10309.gnm1.ann1.CZRZ/MANIFEST.V10309.gnm1.ann1.CZRZ.yml b/Arachis/stenosperma/annotations/V10309.gnm1.ann1.CZRZ/MANIFEST.V10309.gnm1.ann1.CZRZ.yml index 38e5dacf..86b8ab87 100644 --- a/Arachis/stenosperma/annotations/V10309.gnm1.ann1.CZRZ/MANIFEST.V10309.gnm1.ann1.CZRZ.yml +++ b/Arachis/stenosperma/annotations/V10309.gnm1.ann1.CZRZ/MANIFEST.V10309.gnm1.ann1.CZRZ.yml @@ -20,6 +20,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - GCF_014773155.1.modID.genes_exons.gff3.gz - name: arast.V10309.gnm1.ann1.CZRZ.iprscan.gff3.gz diff --git a/Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/CHECKSUM.ICPL87119.gnm2.ann1.L3ZH.md5 b/Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/CHECKSUM.ICPL87119.gnm2.ann1.L3ZH.md5 index a7b4aaee..6e3f8a1d 100644 --- a/Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/CHECKSUM.ICPL87119.gnm2.ann1.L3ZH.md5 +++ b/Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/CHECKSUM.ICPL87119.gnm2.ann1.L3ZH.md5 @@ -1,29 +1,30 @@ -eb479c07b70abdb9946801d302663fd1 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.cds_primary.fna.gz -dfb8dbc2dda1833e9393b5df661528b0 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.cds_primary.fna.gz.fai -5d2a0fdd6c8bec50e6b25c8549d278c1 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.cds_primary.fna.gz.gzi -11f37627e0271cf5925594f81260bdda Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.cds.fna.gz -b8dc7d53b5618b7e7d2266e64a8f431d Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.cds.fna.gz.fai -d2b3ae47123e0d59314d42acfb725322 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.cds.fna.gz.gzi -a8ca9c4c6fe32382f8443c42c6cacc37 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.gene_models_main.bed.gz -99d190d86c8ab32381773434bf2f2f4e Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.gene_models_main.bed.gz.tbi -dc9729933fa6b8da333a1238ec2f03e1 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.gene_models_main.gff3.gz -506f80f0789703001d34a04cec318531 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.gene_models_main.gff3.gz.tbi -4b6eca6aa9088f68787dfcf0c710e914 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.iprscan.gff3.gz -7864741032ae867a5db479a58d869d27 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.iprscan.gff3.gz.tbi -46d96216eb7877a0c82a4e1907d26668 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.legfed_v1_0.M65K.gfa.tsv.gz -d1ffc089b7b8d7f42b8e2d65d6a6c77e Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.mrna_primary.fna.gz -55125fde7abdcbf7250dea4d242c8523 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.mrna_primary.fna.gz.fai -320d71d2e173c804b8dc3a312d0bbccd Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.mrna_primary.fna.gz.gzi -e3dfb53d3834f0be9373a9085a26e627 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.mrna.fna.gz -4b1904474a7a561c1144d2bcf5c5c1e1 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.mrna.fna.gz.fai -bbf414d3545a2bcb6fe3a93b57ed45c4 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.mrna.fna.gz.gzi -01016effa54b1a70fe630b933d022653 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.protein_primary.faa.gz -04aa6a756a6b4aa109af4813fa8aa84c Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.protein_primary.faa.gz.fai -9c30e4f21242526a858966902f97029c Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.protein_primary.faa.gz.gzi -c59d6f00f3c3611822a12c53be0f8fb3 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.protein.faa.gz -59dd48fd3faa0a0d9ef76703dc9279d1 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.protein.faa.gz.fai -ba929e90f14cab3939e6e7521749f811 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.protein.faa.gz.gzi -bcf54cd6870f5fb74fc872d82f6b84ef Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/CHANGES.ICPL87119.gnm2.ann1.L3ZH.txt -ba5bdfb02c919053850fefcb2d4c9534 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/MANIFEST.ICPL87119.gnm2.ann1.L3ZH.corresponding.yml -848cf26b39da1c81e6168118f0fcb5f6 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/MANIFEST.ICPL87119.gnm2.ann1.L3ZH.descriptions.yml -0c355749e44b4545341aeab5d57f4581 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/README.ICPL87119.gnm2.ann1.L3ZH.yml +b8dc7d53b5618b7e7d2266e64a8f431d ./cajca.ICPL87119.gnm2.ann1.L3ZH.cds.fna.gz.fai +5cc4a162922bd8badfcae56aaa5a2c1e ./MANIFEST.ICPL87119.gnm2.ann1.L3ZH.yml +46d96216eb7877a0c82a4e1907d26668 ./cajca.ICPL87119.gnm2.ann1.L3ZH.legfed_v1_0.M65K.gfa.tsv.gz +99d190d86c8ab32381773434bf2f2f4e ./cajca.ICPL87119.gnm2.ann1.L3ZH.gene_models_main.bed.gz.tbi +59dd48fd3faa0a0d9ef76703dc9279d1 ./cajca.ICPL87119.gnm2.ann1.L3ZH.protein.faa.gz.fai +1614715a34725dfe88bd6cdb45fbcafb ./cajca.ICPL87119.gnm2.ann1.L3ZH.iprscan.gff3.gz +55125fde7abdcbf7250dea4d242c8523 ./cajca.ICPL87119.gnm2.ann1.L3ZH.mrna_primary.fna.gz.fai +9b66e7898d2614872e12ea5988a933c7 ./cajca.ICPL87119.gnm2.ann1.L3ZH.gene_models_main.gff3.gz +bcf54cd6870f5fb74fc872d82f6b84ef ./CHANGES.ICPL87119.gnm2.ann1.L3ZH.txt +eb479c07b70abdb9946801d302663fd1 ./cajca.ICPL87119.gnm2.ann1.L3ZH.cds_primary.fna.gz +11f37627e0271cf5925594f81260bdda ./cajca.ICPL87119.gnm2.ann1.L3ZH.cds.fna.gz +04aa6a756a6b4aa109af4813fa8aa84c ./cajca.ICPL87119.gnm2.ann1.L3ZH.protein_primary.faa.gz.fai +0c355749e44b4545341aeab5d57f4581 ./README.ICPL87119.gnm2.ann1.L3ZH.yml +4b1904474a7a561c1144d2bcf5c5c1e1 ./cajca.ICPL87119.gnm2.ann1.L3ZH.mrna.fna.gz.fai +5d2a0fdd6c8bec50e6b25c8549d278c1 ./cajca.ICPL87119.gnm2.ann1.L3ZH.cds_primary.fna.gz.gzi +01016effa54b1a70fe630b933d022653 ./cajca.ICPL87119.gnm2.ann1.L3ZH.protein_primary.faa.gz +e3dfb53d3834f0be9373a9085a26e627 ./cajca.ICPL87119.gnm2.ann1.L3ZH.mrna.fna.gz +dfb8dbc2dda1833e9393b5df661528b0 ./cajca.ICPL87119.gnm2.ann1.L3ZH.cds_primary.fna.gz.fai +bbf414d3545a2bcb6fe3a93b57ed45c4 ./cajca.ICPL87119.gnm2.ann1.L3ZH.mrna.fna.gz.gzi +9c30e4f21242526a858966902f97029c ./cajca.ICPL87119.gnm2.ann1.L3ZH.protein_primary.faa.gz.gzi +d1ffc089b7b8d7f42b8e2d65d6a6c77e ./cajca.ICPL87119.gnm2.ann1.L3ZH.mrna_primary.fna.gz +caacd9ccb3517482b66eb0ec155e7353 ./BUSCO/cajca.ICPL87119.gnm2.ann1.L3ZH.busco.fabales_odb10.short_summary.txt +d9b7f9a365ae6579106a0b11bb7aecc0 ./BUSCO/cajca.ICPL87119.gnm2.ann1.L3ZH.busco.fabales_odb10.full_table.tsv.gz +c7e892f2c2ad01d6fb7f79f5fad524d1 ./BUSCO/cajca.ICPL87119.gnm2.ann1.L3ZH.busco.fabales_odb10.short_summary.json +320d71d2e173c804b8dc3a312d0bbccd ./cajca.ICPL87119.gnm2.ann1.L3ZH.mrna_primary.fna.gz.gzi +c4acc7004e6aa40a63d21f44438c5adc ./cajca.ICPL87119.gnm2.ann1.L3ZH.gene_models_main.gff3.gz.tbi +a8ca9c4c6fe32382f8443c42c6cacc37 ./cajca.ICPL87119.gnm2.ann1.L3ZH.gene_models_main.bed.gz +ba929e90f14cab3939e6e7521749f811 ./cajca.ICPL87119.gnm2.ann1.L3ZH.protein.faa.gz.gzi +c59d6f00f3c3611822a12c53be0f8fb3 ./cajca.ICPL87119.gnm2.ann1.L3ZH.protein.faa.gz +d2b3ae47123e0d59314d42acfb725322 ./cajca.ICPL87119.gnm2.ann1.L3ZH.cds.fna.gz.gzi diff --git a/Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/MANIFEST.ICPL87119.gnm2.ann1.L3ZH.yml b/Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/MANIFEST.ICPL87119.gnm2.ann1.L3ZH.yml index b7deffae..813771fd 100644 --- a/Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/MANIFEST.ICPL87119.gnm2.ann1.L3ZH.yml +++ b/Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/MANIFEST.ICPL87119.gnm2.ann1.L3ZH.yml @@ -16,6 +16,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - Cca.genes.gff - name: cajca.ICPL87119.gnm2.ann1.L3ZH.iprscan.gff3.gz diff --git a/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/CHECKSUM.ISC453364.gnm3.ann1.3N1M.md5 b/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/CHECKSUM.ISC453364.gnm3.ann1.3N1M.md5 index 6833f59c..57c60e46 100644 --- a/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/CHECKSUM.ISC453364.gnm3.ann1.3N1M.md5 +++ b/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/CHECKSUM.ISC453364.gnm3.ann1.3N1M.md5 @@ -1,34 +1,36 @@ -354ece84eba10aa249ac18b3966a4c2c Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.annotation_info.txt.gz -4bec7cbbd449aa99455df91a0ae4edc7 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.cds_primary.fna.gz -3cd02eca9530c48568902957daaa0dc9 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.cds_primary.fna.gz.fai -f7791bdb444d1c40a76574ed2b6535c8 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.cds_primary.fna.gz.gzi -3ba210da27d19bc6150207548767a71e Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.cds.fna.gz -5c20d3069cf0d11b73bab1aea17529bb Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.cds.fna.gz.fai -c128556b8c36032be85c94a8635e2b73 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.cds.fna.gz.gzi -4f85539a3eddd4cad6ac4d3468c91c70 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.DataReleasePolicy.html -f230e2dcd29142e00b8d7db8bd188b6e Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.defline.txt.gz -fd7527713ece7753f5534951ae0f9b81 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.featid_map.tsv.gz -65e9977e875f856fac8c5f89b7a3a385 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.gene_models_main.bed.gz -74798b422c49f5cb31e66ef403462d6f Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.gene_models_main.bed.gz.tbi -47b01c02b835a6c508b5f84368c06739 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.gene_models_main.gff3.gz -2bbd23dec3e014d3c2d03c73b9c7a183 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.gene_models_main.gff3.gz.tbi -b2f6c7c1e0a05fc8d66e40144f731466 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.iprscan.gff3.gz -90b5c291b9326f330fb2febbc0e5ff48 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.legfed_v1_0.M65K.gfa.tsv.gz -7bf8f8b82687aa164514ac5d14c4f134 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.mrna_primary.fna.gz -c95d5d40902d28b6a7d2e5af3c9249d1 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.mrna_primary.fna.gz.fai -700a6556b453247ba254aad42fd7f6b6 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.mrna_primary.fna.gz.gzi -7fdeff103145a673ad5c9760338259bd Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.mrna.fna.gz -e70a34aca8168672d228e1d884f2c6c7 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.mrna.fna.gz.fai -e5417bfa569ced6cad9da2d9fe645f22 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.mrna.fna.gz.gzi -22237aebda7ccd37c94ff55a43f8d1f5 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.original_readme.txt -19f374f492470435326df3b77e712e46 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.protein_primary.faa.gz -fe0adae590e3a697c0708ab839894592 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.protein_primary.faa.gz.fai -2fd7229bd5e32bb098f2d56f5ebf4308 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.protein_primary.faa.gz.gzi -e8513f806620857412b2ebe0c3823af2 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.protein.faa.gz -c19ff7d2ead9a9b70b8da35eb3001386 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.protein.faa.gz.fai -28396b90df64f5d21b64e4d41d95729a Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.protein.faa.gz.gzi -76fcd6f365f14c429df813a95d02e6ad Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.repeatmasked_assembly.gff3.gz -6b6a56ae2bc8c1e5815ef822f744b0e5 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/CHANGES.ISC453364.gnm3.ann1.3N1M.txt -dc1b6e205fb2e890cf8178911b234140 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/MANIFEST.ISC453364.gnm3.ann1.3N1M.correspondence.yml -73f361a776b662808cd4f85470115c7b Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/MANIFEST.ISC453364.gnm3.ann1.3N1M.descriptions.yml -fcfe396f0af2fddb2a5c052d97e4eb6f Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/README.ISC453364.gnm3.ann1.3N1M.yml +e5417bfa569ced6cad9da2d9fe645f22 ./cerca.ISC453364.gnm3.ann1.3N1M.mrna.fna.gz.gzi +f230e2dcd29142e00b8d7db8bd188b6e ./cerca.ISC453364.gnm3.ann1.3N1M.defline.txt.gz +4bec7cbbd449aa99455df91a0ae4edc7 ./cerca.ISC453364.gnm3.ann1.3N1M.cds_primary.fna.gz +2fd7229bd5e32bb098f2d56f5ebf4308 ./cerca.ISC453364.gnm3.ann1.3N1M.protein_primary.faa.gz.gzi +c95d5d40902d28b6a7d2e5af3c9249d1 ./cerca.ISC453364.gnm3.ann1.3N1M.mrna_primary.fna.gz.fai +c128556b8c36032be85c94a8635e2b73 ./cerca.ISC453364.gnm3.ann1.3N1M.cds.fna.gz.gzi +e8513f806620857412b2ebe0c3823af2 ./cerca.ISC453364.gnm3.ann1.3N1M.protein.faa.gz +fcfe396f0af2fddb2a5c052d97e4eb6f ./README.ISC453364.gnm3.ann1.3N1M.yml +3b30159f72d457d3fad5584423ccf21d ./BUSCO/cerca.ISC453364.gnm3.ann1.3N1M.busco.fabales_odb10.full_table.tsv.gz +334fc7298f4a77704fbe2b514ba7f48c ./BUSCO/cerca.ISC453364.gnm3.ann1.3N1M.busco.fabales_odb10.short_summary.txt +6975d20a2ef06c2898519ad558603690 ./BUSCO/cerca.ISC453364.gnm3.ann1.3N1M.busco.fabales_odb10.short_summary.json +47b01c02b835a6c508b5f84368c06739 ./cerca.ISC453364.gnm3.ann1.3N1M.gene_models_main.gff3.gz +f7791bdb444d1c40a76574ed2b6535c8 ./cerca.ISC453364.gnm3.ann1.3N1M.cds_primary.fna.gz.gzi +c19ff7d2ead9a9b70b8da35eb3001386 ./cerca.ISC453364.gnm3.ann1.3N1M.protein.faa.gz.fai +90b5c291b9326f330fb2febbc0e5ff48 ./cerca.ISC453364.gnm3.ann1.3N1M.legfed_v1_0.M65K.gfa.tsv.gz +19f374f492470435326df3b77e712e46 ./cerca.ISC453364.gnm3.ann1.3N1M.protein_primary.faa.gz +74798b422c49f5cb31e66ef403462d6f ./cerca.ISC453364.gnm3.ann1.3N1M.gene_models_main.bed.gz.tbi +7fdeff103145a673ad5c9760338259bd ./cerca.ISC453364.gnm3.ann1.3N1M.mrna.fna.gz +2bbd23dec3e014d3c2d03c73b9c7a183 ./cerca.ISC453364.gnm3.ann1.3N1M.gene_models_main.gff3.gz.tbi +6b6a56ae2bc8c1e5815ef822f744b0e5 ./CHANGES.ISC453364.gnm3.ann1.3N1M.txt +7bf8f8b82687aa164514ac5d14c4f134 ./cerca.ISC453364.gnm3.ann1.3N1M.mrna_primary.fna.gz +3ba210da27d19bc6150207548767a71e ./cerca.ISC453364.gnm3.ann1.3N1M.cds.fna.gz +4f85539a3eddd4cad6ac4d3468c91c70 ./cerca.ISC453364.gnm3.ann1.3N1M.DataReleasePolicy.html +76fcd6f365f14c429df813a95d02e6ad ./cerca.ISC453364.gnm3.ann1.3N1M.repeatmasked_assembly.gff3.gz +3cd02eca9530c48568902957daaa0dc9 ./cerca.ISC453364.gnm3.ann1.3N1M.cds_primary.fna.gz.fai +28396b90df64f5d21b64e4d41d95729a ./cerca.ISC453364.gnm3.ann1.3N1M.protein.faa.gz.gzi +b2f6c7c1e0a05fc8d66e40144f731466 ./cerca.ISC453364.gnm3.ann1.3N1M.iprscan.gff3.gz +354ece84eba10aa249ac18b3966a4c2c ./cerca.ISC453364.gnm3.ann1.3N1M.annotation_info.txt.gz +5c20d3069cf0d11b73bab1aea17529bb ./cerca.ISC453364.gnm3.ann1.3N1M.cds.fna.gz.fai +22237aebda7ccd37c94ff55a43f8d1f5 ./cerca.ISC453364.gnm3.ann1.3N1M.original_readme.txt +fd7527713ece7753f5534951ae0f9b81 ./cerca.ISC453364.gnm3.ann1.3N1M.featid_map.tsv.gz +65e9977e875f856fac8c5f89b7a3a385 ./cerca.ISC453364.gnm3.ann1.3N1M.gene_models_main.bed.gz +700a6556b453247ba254aad42fd7f6b6 ./cerca.ISC453364.gnm3.ann1.3N1M.mrna_primary.fna.gz.gzi +fe0adae590e3a697c0708ab839894592 ./cerca.ISC453364.gnm3.ann1.3N1M.protein_primary.faa.gz.fai +c586de55734c76fa53f993429c26e808 ./MANIFEST.ISC453364.gnm3.ann1.3N1M.yml +e70a34aca8168672d228e1d884f2c6c7 ./cerca.ISC453364.gnm3.ann1.3N1M.mrna.fna.gz.fai diff --git a/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/MANIFEST.ISC453364.gnm3.ann1.3N1M.yml b/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/MANIFEST.ISC453364.gnm3.ann1.3N1M.yml index a26116fc..bf6ed467 100644 --- a/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/MANIFEST.ISC453364.gnm3.ann1.3N1M.yml +++ b/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/MANIFEST.ISC453364.gnm3.ann1.3N1M.yml @@ -26,6 +26,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - Ccanadensis_705_V3.1.gene_strip.gff3.gz - name: cerca.ISC453364.gnm3.ann1.3N1M.iprscan.gff3.gz diff --git a/Cercis/chinensis/annotations/GXIB.gnm1.ann1.L8L4/CHECKSUM.GXIB.gnm1.ann1.L8L4.md5 b/Cercis/chinensis/annotations/GXIB.gnm1.ann1.L8L4/CHECKSUM.GXIB.gnm1.ann1.L8L4.md5 index 89f3b7ef..3cf9a191 100644 --- a/Cercis/chinensis/annotations/GXIB.gnm1.ann1.L8L4/CHECKSUM.GXIB.gnm1.ann1.L8L4.md5 +++ b/Cercis/chinensis/annotations/GXIB.gnm1.ann1.L8L4/CHECKSUM.GXIB.gnm1.ann1.L8L4.md5 @@ -12,12 +12,11 @@ d4bbefc8d565911d2f94accc17e370d6 ./BUSCO/cerch.GXIB.gnm1.ann1.L8L4.busco.fabale 3087a692aa13b3b77c0341b8bf467370 ./cerch.GXIB.gnm1.ann1.L8L4.gene_models_main.gff3.gz 6ff864e90bec4614df6018f58099b911 ./cerch.GXIB.gnm1.ann1.L8L4.mrna.fna.gz.fai 400cb7ff637035580c5d79330e67ad8c ./initial_seqid_map.tsv.gz -2c2a0d93d3008fc86e9c269f8b3429af ./MANIFEST.GXIB.gnm1.ann1.L8L4.descriptions.yml e531870b5a703d5fdfc525cdfab5ba20 ./cerch.GXIB.gnm1.ann1.L8L4.mrna.fna.gz.gzi -1a4d8a28e82af01aa60736bedf38f124 ./MANIFEST.GXIB.gnm1.ann1.L8L4.correspondence.yml 2fb0cf88b85630ffaa950b6fbcd93c07 ./cerch.GXIB.gnm1.ann1.L8L4.legfed_v1_0.M65K.gfa.tsv.gz c92a531cf55e8433ef04cdcc4bc638dd ./cerch.GXIB.gnm1.ann1.L8L4.iprscan.gff3.gz.tbi 5071ef19dc3fd20a7111a2245286b792 ./cerch.GXIB.gnm1.ann1.L8L4.protein.faa.gz.fai +cf22efc47045c1cf70c1d3bc8e592ef5 ./MANIFEST.GXIB.gnm1.ann1.L8L4.yml 41b53ce70f33697e1b3804d7037f02a5 ./cerch.GXIB.gnm1.ann1.L8L4.cds.fna.gz.gzi bc41e89b4498fa8dd02786010fdbcef3 ./cerch.GXIB.gnm1.ann1.L8L4.protein.faa.gz f14447ecf6ddafb17ed6907ab3811d6b ./cerch.GXIB.gnm1.ann1.L8L4.gene_models_main.bed.gz diff --git a/Cercis/chinensis/annotations/GXIB.gnm1.ann1.L8L4/MANIFEST.GXIB.gnm1.ann1.L8L4.yml b/Cercis/chinensis/annotations/GXIB.gnm1.ann1.L8L4/MANIFEST.GXIB.gnm1.ann1.L8L4.yml index b3202ef7..19332777 100644 --- a/Cercis/chinensis/annotations/GXIB.gnm1.ann1.L8L4/MANIFEST.GXIB.gnm1.ann1.L8L4.yml +++ b/Cercis/chinensis/annotations/GXIB.gnm1.ann1.L8L4/MANIFEST.GXIB.gnm1.ann1.L8L4.yml @@ -14,6 +14,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - GWHBHAK00000000.modID.gff3.gz - name: cerch.GXIB.gnm1.ann1.L8L4.iprscan.gff3.gz diff --git a/Chamaecrista/fasciculata/annotations/ISC494698.gnm1.ann1.G7XW/CHECKSUM.ISC494698.gnm1.ann1.G7XW.md5 b/Chamaecrista/fasciculata/annotations/ISC494698.gnm1.ann1.G7XW/CHECKSUM.ISC494698.gnm1.ann1.G7XW.md5 index 34190d55..afeffd65 100644 --- a/Chamaecrista/fasciculata/annotations/ISC494698.gnm1.ann1.G7XW/CHECKSUM.ISC494698.gnm1.ann1.G7XW.md5 +++ b/Chamaecrista/fasciculata/annotations/ISC494698.gnm1.ann1.G7XW/CHECKSUM.ISC494698.gnm1.ann1.G7XW.md5 @@ -9,6 +9,7 @@ d206b28664ffff98ecb0baa3563e0d2b ./chafa.ISC494698.gnm1.ann1.G7XW.cds_primary.f 0224c9e894553ba0b74b919d0b9fb02c ./chafa.ISC494698.gnm1.ann1.G7XW.mrna_primary.fna.gz b8764470c0f84fdd7763fbcc0ada227f ./chafa.ISC494698.gnm1.ann1.G7XW.gene_models_main.gff3.gz ba689423e85c438a0827bb6511ef61e8 ./chafa.ISC494698.gnm1.ann1.G7XW.iprscan.gff3.gz +d2189b3b934c8f6b59b830da47be611e ./MANIFEST.ISC494698.gnm1.ann1.G7XW.yml a61b1e4a977f074efa30948e9949613f ./chafa.ISC494698.gnm1.ann1.G7XW.DataReleasePolicy.html a507060b7b15066d905d07d1d3b8f903 ./chafa.ISC494698.gnm1.ann1.G7XW.cds.fna.gz.gzi f2b3e3eebed99238efa1c3501ba0e3be ./chafa.ISC494698.gnm1.ann1.G7XW.mrna.fna.gz @@ -23,7 +24,6 @@ bb9913031e6f3209920b64f67c874d4f ./chafa.ISC494698.gnm1.ann1.G7XW.gene_models_m f7ae1568ae71a1d072faf458ea72da52 ./chafa.ISC494698.gnm1.ann1.G7XW.mrna.fna.gz.gzi 3e8447d6f0157b23a672ca9c3bbfecd1 ./chafa.ISC494698.gnm1.ann1.G7XW.iprscan.gff3.gz.tbi 2af0f511bb82e8fb447d822e0d132557 ./chafa.ISC494698.gnm1.ann1.G7XW.protein.faa.gz.fai -6531da4d0f87cd0d4230b5393539d566 ./MANIFEST.ISC494698.gnm1.ann1.G7XW.descriptions.yml da50db7412ca748aee59a725a37cb06a ./chafa.ISC494698.gnm1.ann1.G7XW.gene_models_exons.gff3.gz cdfcb63ba790a2f46b00414af6613090 ./chafa.ISC494698.gnm1.ann1.G7XW.cds.fna.gz.fai 1ea4faee85c222164135f27c5f7f3f40 ./BUSCO/chafa.ISC494698.gnm1.ann1.G7XW.busco.fabales_odb10.short_summary.txt @@ -33,6 +33,5 @@ a5d2b0ef6c343956d70585dbc5c33d62 ./BUSCO/chafa.ISC494698.gnm1.ann1.G7XW.busco.f 1832b040d7d708541e690bd002a06a39 ./chafa.ISC494698.gnm1.ann1.G7XW.cds_primary.fna.gz.gzi d8cb3864ca50c65aaa310661a2b3f662 ./chafa.ISC494698.gnm1.ann1.G7XW.protein_primary.faa.gz 5513083ee26c3cdb548180f308b718cd ./CHANGES.ISC494698.gnm1.ann1.G7XW.txt -0690a911693b4bf994b979166891f60f ./MANIFEST.ISC494698.gnm1.ann1.G7XW.correspondence.yml 3e844bad33eab1ffc90a7e4e762c9b29 ./chafa.ISC494698.gnm1.ann1.G7XW.cds_primary.fna.gz cac250b6923bbfc3cc596755844af9e2 ./chafa.ISC494698.gnm1.ann1.G7XW.mrna_primary.fna.gz.fai diff --git a/Chamaecrista/fasciculata/annotations/ISC494698.gnm1.ann1.G7XW/MANIFEST.ISC494698.gnm1.ann1.G7XW.yml b/Chamaecrista/fasciculata/annotations/ISC494698.gnm1.ann1.G7XW/MANIFEST.ISC494698.gnm1.ann1.G7XW.yml index bcc8ce1b..80f2fb49 100644 --- a/Chamaecrista/fasciculata/annotations/ISC494698.gnm1.ann1.G7XW/MANIFEST.ISC494698.gnm1.ann1.G7XW.yml +++ b/Chamaecrista/fasciculata/annotations/ISC494698.gnm1.ann1.G7XW/MANIFEST.ISC494698.gnm1.ann1.G7XW.yml @@ -26,6 +26,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: chafa.ISC494698.gnm1.ann1.G7XW.iprscan.gff3.gz description: InterPro functional information for genes (gff format) - name: chafa.ISC494698.gnm1.ann1.G7XW.legfed_v1_0.M65K.gfa.tsv.gz diff --git a/Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/CHECKSUM.CDCFrontier.gnm2.ann1.9M1L.md5 b/Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/CHECKSUM.CDCFrontier.gnm2.ann1.9M1L.md5 index ad8fa952..f31f8fcb 100644 --- a/Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/CHECKSUM.CDCFrontier.gnm2.ann1.9M1L.md5 +++ b/Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/CHECKSUM.CDCFrontier.gnm2.ann1.9M1L.md5 @@ -1,29 +1,31 @@ -c9d70701f6fc4246c7d8cf84f01c8297 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/CHANGES.CDCFrontier.gnm2.ann1.9M1L.txt -ad5e4eded4f4fedca245bdb7a79ead74 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.cds_primary.fna.gz -e47dd18d9607743f63e3ab399a428c0b Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.cds_primary.fna.gz.fai -3444a695dd0b5bef4568009b1417ffe2 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.cds_primary.fna.gz.gzi -7f25e0c34cb3c32fa645d4c1e6d347b0 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.cds.fna.gz -413de6a8f22697e7deb7537e5de9c279 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.cds.fna.gz.fai -59d34769f24d77af473da6b72be95b58 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.cds.fna.gz.gzi -dc9ab96078e60ad07e3d86349e629d5d Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.gene_models_main.bed.gz -fd29358a783f962c8ff0b4e0100f3227 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.gene_models_main.bed.gz.tbi -7dbed67e6878fb0939f680d9ac1bfdd3 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.gene_models_main.gff3.gz -bec92c0e92977381c83feca0d90b1918 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.gene_models_main.gff3.gz.tbi -af97f51509a600a954453c81587bead9 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.iprscan.gff3.gz -69b543f2e41de8c07c83d30adb1804e8 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.iprscan.gff3.gz.tbi -f88b9b13da3f8ebc4cda173f5cc14ebd Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.legfed_v1_0.M65K.gfa.tsv.gz -f6b7efa8ed6477947caae798528cad89 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.mrna_primary.fna.gz -d902c47684926bfc6833ba10a956bff7 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.mrna_primary.fna.gz.fai -a383d557000c470b45378ab0ebf91acd Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.mrna_primary.fna.gz.gzi -82244209dfceb45d4e732cc7eed548a8 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.mrna.fna.gz -b0ada569c3efc209bf65cb0667d4cac9 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.mrna.fna.gz.fai -e35e7006a3a9890ede6e26f6c57ab991 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.mrna.fna.gz.gzi -9cdd6e1bc5a99873207abcd571105801 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.protein_primary.faa.gz -dc628cc8fffef1a1f9079104a0bd9722 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.protein_primary.faa.gz.fai -e80f65752b79d9467b2d142a4512a15d Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.protein_primary.faa.gz.gzi -c5188452ed86b2573f985f5e318bf122 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.protein.faa.gz -a7cd47f0abc2ec1d13c4bea23c8eac81 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.protein.faa.gz.fai -9734814bdd0694d67bccf78c8653799b Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.protein.faa.gz.gzi -56522ccdbd33543e4b58009e58ce63d5 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/MANIFEST.CDCFrontier.gnm2.ann1.9M1L.corresponding.yml -da3760aa9364ca41de6100d4205fbe87 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/MANIFEST.CDCFrontier.gnm2.ann1.9M1L.descriptions.yml -dde601defe9d7b8be99a7a69f974aa62 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/README.CDCFrontier.gnm2.ann1.9M1L.yml +d902c47684926bfc6833ba10a956bff7 ./cicar.CDCFrontier.gnm2.ann1.9M1L.mrna_primary.fna.gz.fai +06c8601cdd22b3a8a2182371ba892f4b ./BUSCO/cicar.CDCFrontier.gnm2.ann1.9M1L.busco.fabales_odb10.full_table.tsv.gz +9023067d676c00296fb195b0246e970c ./BUSCO/cicar.CDCFrontier.gnm2.ann1.9M1L.busco.fabales_odb10.short_summary.json +41513867d845e799b588e419cccd1e84 ./BUSCO/cicar.CDCFrontier.gnm2.ann1.9M1L.busco.fabales_odb10.short_summary.txt +dc628cc8fffef1a1f9079104a0bd9722 ./cicar.CDCFrontier.gnm2.ann1.9M1L.protein_primary.faa.gz.fai +dde601defe9d7b8be99a7a69f974aa62 ./README.CDCFrontier.gnm2.ann1.9M1L.yml +9734814bdd0694d67bccf78c8653799b ./cicar.CDCFrontier.gnm2.ann1.9M1L.protein.faa.gz.gzi +e47dd18d9607743f63e3ab399a428c0b ./cicar.CDCFrontier.gnm2.ann1.9M1L.cds_primary.fna.gz.fai +bec92c0e92977381c83feca0d90b1918 ./cicar.CDCFrontier.gnm2.ann1.9M1L.gene_models_main.gff3.gz.tbi +fd29358a783f962c8ff0b4e0100f3227 ./cicar.CDCFrontier.gnm2.ann1.9M1L.gene_models_main.bed.gz.tbi +f6b7efa8ed6477947caae798528cad89 ./cicar.CDCFrontier.gnm2.ann1.9M1L.mrna_primary.fna.gz +f88b9b13da3f8ebc4cda173f5cc14ebd ./cicar.CDCFrontier.gnm2.ann1.9M1L.legfed_v1_0.M65K.gfa.tsv.gz +413de6a8f22697e7deb7537e5de9c279 ./cicar.CDCFrontier.gnm2.ann1.9M1L.cds.fna.gz.fai +e35e7006a3a9890ede6e26f6c57ab991 ./cicar.CDCFrontier.gnm2.ann1.9M1L.mrna.fna.gz.gzi +c9d70701f6fc4246c7d8cf84f01c8297 ./CHANGES.CDCFrontier.gnm2.ann1.9M1L.txt +ad5e4eded4f4fedca245bdb7a79ead74 ./cicar.CDCFrontier.gnm2.ann1.9M1L.cds_primary.fna.gz +82244209dfceb45d4e732cc7eed548a8 ./cicar.CDCFrontier.gnm2.ann1.9M1L.mrna.fna.gz +b0ada569c3efc209bf65cb0667d4cac9 ./cicar.CDCFrontier.gnm2.ann1.9M1L.mrna.fna.gz.fai +a64419bdaff2240a436c06eeb5c2cad5 ./MANIFEST.CDCFrontier.gnm2.ann1.9M1L.yml +c5188452ed86b2573f985f5e318bf122 ./cicar.CDCFrontier.gnm2.ann1.9M1L.protein.faa.gz +59d34769f24d77af473da6b72be95b58 ./cicar.CDCFrontier.gnm2.ann1.9M1L.cds.fna.gz.gzi +3444a695dd0b5bef4568009b1417ffe2 ./cicar.CDCFrontier.gnm2.ann1.9M1L.cds_primary.fna.gz.gzi +7dbed67e6878fb0939f680d9ac1bfdd3 ./cicar.CDCFrontier.gnm2.ann1.9M1L.gene_models_main.gff3.gz +7f25e0c34cb3c32fa645d4c1e6d347b0 ./cicar.CDCFrontier.gnm2.ann1.9M1L.cds.fna.gz +9cdd6e1bc5a99873207abcd571105801 ./cicar.CDCFrontier.gnm2.ann1.9M1L.protein_primary.faa.gz +e80f65752b79d9467b2d142a4512a15d ./cicar.CDCFrontier.gnm2.ann1.9M1L.protein_primary.faa.gz.gzi +a7cd47f0abc2ec1d13c4bea23c8eac81 ./cicar.CDCFrontier.gnm2.ann1.9M1L.protein.faa.gz.fai +af97f51509a600a954453c81587bead9 ./cicar.CDCFrontier.gnm2.ann1.9M1L.iprscan.gff3.gz +a383d557000c470b45378ab0ebf91acd ./cicar.CDCFrontier.gnm2.ann1.9M1L.mrna_primary.fna.gz.gzi +dc9ab96078e60ad07e3d86349e629d5d ./cicar.CDCFrontier.gnm2.ann1.9M1L.gene_models_main.bed.gz +69b543f2e41de8c07c83d30adb1804e8 ./cicar.CDCFrontier.gnm2.ann1.9M1L.iprscan.gff3.gz.tbi diff --git a/Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/MANIFEST.CDCFrontier.gnm2.ann1.9M1L.yml b/Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/MANIFEST.CDCFrontier.gnm2.ann1.9M1L.yml index 75d462b5..c862a80f 100644 --- a/Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/MANIFEST.CDCFrontier.gnm2.ann1.9M1L.yml +++ b/Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/MANIFEST.CDCFrontier.gnm2.ann1.9M1L.yml @@ -16,6 +16,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - Car.genes.gff - name: cicar.CDCFrontier.gnm2.ann1.9M1L.iprscan.gff3.gz diff --git a/Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/CHECKSUM.CDCFrontier.gnm3.ann1.NPD7.md5 b/Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/CHECKSUM.CDCFrontier.gnm3.ann1.NPD7.md5 index 7f6020c5..0dd1339e 100644 --- a/Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/CHECKSUM.CDCFrontier.gnm3.ann1.NPD7.md5 +++ b/Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/CHECKSUM.CDCFrontier.gnm3.ann1.NPD7.md5 @@ -1,10 +1,14 @@ -9100af4466210c32281353469f776069 Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.cds.fna.gz -c337fb92d54e0ce9727e8b0b672344fd Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.gcv_genes.gff3.gz -c07032da95e3671ccfed2508e89174a5 Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.gene_models_main.bed.gz -e5713c8d768bc216efe8bd0ef63a8e2c Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.gene_models_main.bed.gz.tbi -35e0c3412515c2af6dadd1c7c14efd5e Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.gene_models_main.gff3.gz -90d4448bba39fb50c28e64dcd7aca9a0 Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.gene_models_main.gff3.gz.tbi -cd0cd2ebfeba764d47207706a81c88e8 Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.legfed_v1_0.M65K.gfa.tsv.gz -b1a5382550a1ebc29ab0d28e3a8adb7d Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.mrna.fna.gz -137fef4aacb2c136160cc83e5344cbee Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.protein.faa.gz -c6d746d74eea7c10ca5af502edab2983 Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/README.CDCFrontier.gnm3.ann1.NPD7.yml +9100af4466210c32281353469f776069 ./cicar.CDCFrontier.gnm3.ann1.NPD7.cds.fna.gz +c07032da95e3671ccfed2508e89174a5 ./cicar.CDCFrontier.gnm3.ann1.NPD7.gene_models_main.bed.gz +35e0c3412515c2af6dadd1c7c14efd5e ./cicar.CDCFrontier.gnm3.ann1.NPD7.gene_models_main.gff3.gz +90d4448bba39fb50c28e64dcd7aca9a0 ./cicar.CDCFrontier.gnm3.ann1.NPD7.gene_models_main.gff3.gz.tbi +cd0cd2ebfeba764d47207706a81c88e8 ./cicar.CDCFrontier.gnm3.ann1.NPD7.legfed_v1_0.M65K.gfa.tsv.gz +e5713c8d768bc216efe8bd0ef63a8e2c ./cicar.CDCFrontier.gnm3.ann1.NPD7.gene_models_main.bed.gz.tbi +d83ff7b0b5a161f16b625b37e893345b ./MANIFEST.CDCFrontier.gnm3.ann1.NPD7.yml +b1a5382550a1ebc29ab0d28e3a8adb7d ./cicar.CDCFrontier.gnm3.ann1.NPD7.mrna.fna.gz +020825cab2e68d11d30eba9fa0ebffac ./BUSCO/cicar.CDCFrontier.gnm3.ann1.NPD7.busco.fabales_odb10.short_summary.txt +de5459ed8790b0c1e15ef9c5db82c461 ./BUSCO/cicar.CDCFrontier.gnm3.ann1.NPD7.busco.fabales_odb10.full_table.tsv.gz +b08ec7419295408e40f8aa6be9a51561 ./BUSCO/cicar.CDCFrontier.gnm3.ann1.NPD7.busco.fabales_odb10.short_summary.json +c6d746d74eea7c10ca5af502edab2983 ./README.CDCFrontier.gnm3.ann1.NPD7.yml +137fef4aacb2c136160cc83e5344cbee ./cicar.CDCFrontier.gnm3.ann1.NPD7.protein.faa.gz +c337fb92d54e0ce9727e8b0b672344fd ./cicar.CDCFrontier.gnm3.ann1.NPD7.gcv_genes.gff3.gz diff --git a/Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/MANIFEST.CDCFrontier.gnm3.ann1.NPD7.yml b/Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/MANIFEST.CDCFrontier.gnm3.ann1.NPD7.yml index c966b4a3..f123e894 100644 --- a/Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/MANIFEST.CDCFrontier.gnm3.ann1.NPD7.yml +++ b/Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/MANIFEST.CDCFrontier.gnm3.ann1.NPD7.yml @@ -12,6 +12,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: cicar.CDCFrontier.gnm3.ann1.NPD7.legfed_v1_0.M65K.gfa.tsv.gz description: gene family assignments - name: cicar.CDCFrontier.gnm3.ann1.NPD7.mrna.fna.gz diff --git a/Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/CHECKSUM.ICC4958.gnm2.ann1.LCVX.md5 b/Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/CHECKSUM.ICC4958.gnm2.ann1.LCVX.md5 index 5d088f26..ecb056d0 100644 --- a/Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/CHECKSUM.ICC4958.gnm2.ann1.LCVX.md5 +++ b/Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/CHECKSUM.ICC4958.gnm2.ann1.LCVX.md5 @@ -2,7 +2,7 @@ c7f2134f023ad53095d0d0ee03f266c2 ./cicar.ICC4958.gnm2.ann1.LCVX.mrna_primary.fn 310b4a52575c278ef2c7cee799ca742d ./cicar.ICC4958.gnm2.ann1.LCVX.mrna_primary.fna.gz.fai e738288eced6afca8652ba5d34a984f4 ./cicar.ICC4958.gnm2.ann1.LCVX.protein.faa.gz.fai f3a3a9bc576163a7f33001efa8186323 ./cicar.ICC4958.gnm2.ann1.LCVX.gene_models_main.gff3.gz -0f776e8964ce8b63383cca7c575210ef ./MANIFEST.ICC4958.gnm2.ann1.LCVX.yml +1d512bcc1a8bb0fc0e9b97f0d8e08c25 ./MANIFEST.ICC4958.gnm2.ann1.LCVX.yml 5e5291ac45d736251924ea7b3bd4cf1b ./cicar.ICC4958.gnm2.ann1.LCVX.protein.faa.gz 917122fd1d77e1c4559c2be476e28e08 ./cicar.ICC4958.gnm2.ann1.LCVX.cds.fna.gz.gzi e7635ea840d73f7032adc81e340222eb ./cicar.ICC4958.gnm2.ann1.LCVX.mrna.fna.gz.fai diff --git a/Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/MANIFEST.ICC4958.gnm2.ann1.LCVX.yml b/Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/MANIFEST.ICC4958.gnm2.ann1.LCVX.yml index 6aa23847..62030213 100644 --- a/Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/MANIFEST.ICC4958.gnm2.ann1.LCVX.yml +++ b/Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/MANIFEST.ICC4958.gnm2.ann1.LCVX.yml @@ -18,6 +18,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - cicar.ICC4958.a2.v1.gff3.gz - name: cicar.ICC4958.gnm2.ann1.LCVX.legfed_v1_0.M65K.gfa.tsv.gz diff --git a/Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/CHECKSUM.S2Drd065.gnm1.ann1.YZ9H.md5 b/Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/CHECKSUM.S2Drd065.gnm1.ann1.YZ9H.md5 index e1250082..e950e4b9 100644 --- a/Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/CHECKSUM.S2Drd065.gnm1.ann1.YZ9H.md5 +++ b/Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/CHECKSUM.S2Drd065.gnm1.ann1.YZ9H.md5 @@ -1,10 +1,14 @@ -da96c9438b7102fd483dc3db9d970b9f Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.cds.fna.gz -a07c494f81368f183c65cb3f9db7eb34 Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.gcv_genes.gff3.gz -38535dbad6e8038fad706c73813a65f6 Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.gene_models_main.bed.gz -c49bf01348e7ee9e64e4c4822f7978b9 Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.gene_models_main.bed.gz.tbi -cfa664937021b5010bdaec1bb3fe3ea5 Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.gene_models_main.gff3.gz -4eda0ecd700cc246b92304898c6d8cb7 Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.gene_models_main.gff3.gz.tbi -a7947b3f301c0e6090045d4d681044d1 Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.legfed_v1_0.M65K.gfa.tsv.gz -3201483857acb1a5e4a6ae18c08e3d5d Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.mrna.fna.gz -49eeaf6c58777d736d41f8d2278d553a Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.protein.faa.gz -d48615baca68b7aa0c4428bf12981a5d Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/README.S2Drd065.gnm1.ann1.YZ9H.yml +a3dcbff08ae04f17a9ae871098330647 ./MANIFEST.S2Drd065.gnm1.ann1.YZ9H.yml +49eeaf6c58777d736d41f8d2278d553a ./cicec.S2Drd065.gnm1.ann1.YZ9H.protein.faa.gz +cfa664937021b5010bdaec1bb3fe3ea5 ./cicec.S2Drd065.gnm1.ann1.YZ9H.gene_models_main.gff3.gz +c40adec554e8971d222a6006fa8a9c9e ./BUSCO/cicec.S2Drd065.gnm1.ann1.YZ9H.busco.fabales_odb10.short_summary.json +3c01c3158bf800dd22a82b3ebc35f0ff ./BUSCO/cicec.S2Drd065.gnm1.ann1.YZ9H.busco.fabales_odb10.short_summary.txt +cd0640064e63039130ce5c4068d6f0ee ./BUSCO/cicec.S2Drd065.gnm1.ann1.YZ9H.busco.fabales_odb10.full_table.tsv.gz +a07c494f81368f183c65cb3f9db7eb34 ./cicec.S2Drd065.gnm1.ann1.YZ9H.gcv_genes.gff3.gz +da96c9438b7102fd483dc3db9d970b9f ./cicec.S2Drd065.gnm1.ann1.YZ9H.cds.fna.gz +38535dbad6e8038fad706c73813a65f6 ./cicec.S2Drd065.gnm1.ann1.YZ9H.gene_models_main.bed.gz +d48615baca68b7aa0c4428bf12981a5d ./README.S2Drd065.gnm1.ann1.YZ9H.yml +3201483857acb1a5e4a6ae18c08e3d5d ./cicec.S2Drd065.gnm1.ann1.YZ9H.mrna.fna.gz +4eda0ecd700cc246b92304898c6d8cb7 ./cicec.S2Drd065.gnm1.ann1.YZ9H.gene_models_main.gff3.gz.tbi +a7947b3f301c0e6090045d4d681044d1 ./cicec.S2Drd065.gnm1.ann1.YZ9H.legfed_v1_0.M65K.gfa.tsv.gz +c49bf01348e7ee9e64e4c4822f7978b9 ./cicec.S2Drd065.gnm1.ann1.YZ9H.gene_models_main.bed.gz.tbi diff --git a/Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/MANIFEST.S2Drd065.gnm1.ann1.YZ9H.yml b/Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/MANIFEST.S2Drd065.gnm1.ann1.YZ9H.yml index 619fd722..1661ddc6 100644 --- a/Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/MANIFEST.S2Drd065.gnm1.ann1.YZ9H.yml +++ b/Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/MANIFEST.S2Drd065.gnm1.ann1.YZ9H.yml @@ -12,6 +12,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: cicec.S2Drd065.gnm1.ann1.YZ9H.legfed_v1_0.M65K.gfa.tsv.gz description: gene family assignments - name: cicec.S2Drd065.gnm1.ann1.YZ9H.mrna.fna.gz diff --git a/Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/CHECKSUM.Besev079.gnm1.ann1.F01Z.md5 b/Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/CHECKSUM.Besev079.gnm1.ann1.F01Z.md5 index 9daa6c08..ceea77b4 100644 --- a/Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/CHECKSUM.Besev079.gnm1.ann1.F01Z.md5 +++ b/Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/CHECKSUM.Besev079.gnm1.ann1.F01Z.md5 @@ -1,10 +1,14 @@ -0663a42dbb8368edb0527d235922ba95 Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.cds.fna.gz -e4a9ab68db1e07c798982f95a1bad369 Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.gcv_genes.gff3.gz -c67ef0f1a935db911cab0c794ae439ba Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.gene_models_main.bed.gz -7bd73dd73fcb8144eaba6f89ec1858af Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.gene_models_main.bed.gz.tbi -d79d8406de728b09ef83d32f41735df8 Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.gene_models_main.gff3.gz -7a03c6f4ade0d8b517c153d6e11a2963 Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.gene_models_main.gff3.gz.tbi -33cff98eb0f38b344e438b621a64d0f1 Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.legfed_v1_0.M65K.gfa.tsv.gz -a57e98a1a1fff2b460e437c4b64a1240 Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.mrna.fna.gz -d7e15efd2a0209f5d2a48696df68ed9d Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.protein.faa.gz -06f8132d21234c50f48d1abc96e7cec7 Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/README.Besev079.gnm1.ann1.F01Z.yml +06f8132d21234c50f48d1abc96e7cec7 ./README.Besev079.gnm1.ann1.F01Z.yml +70040246deafbe2f91e789a4ea9290d3 ./BUSCO/cicre.Besev079.gnm1.ann1.F01Z.busco.fabales_odb10.short_summary.json +af3e70fe8a98271612d29fe0d548cb65 ./BUSCO/cicre.Besev079.gnm1.ann1.F01Z.busco.fabales_odb10.short_summary.txt +6d1e6f16dcb8e088f807f3ebf956dc88 ./BUSCO/cicre.Besev079.gnm1.ann1.F01Z.busco.fabales_odb10.full_table.tsv.gz +d7e15efd2a0209f5d2a48696df68ed9d ./cicre.Besev079.gnm1.ann1.F01Z.protein.faa.gz +c67ef0f1a935db911cab0c794ae439ba ./cicre.Besev079.gnm1.ann1.F01Z.gene_models_main.bed.gz +d4cd50ee9441b8fd3ea135166fce86b7 ./MANIFEST.Besev079.gnm1.ann1.F01Z.yml +7bd73dd73fcb8144eaba6f89ec1858af ./cicre.Besev079.gnm1.ann1.F01Z.gene_models_main.bed.gz.tbi +33cff98eb0f38b344e438b621a64d0f1 ./cicre.Besev079.gnm1.ann1.F01Z.legfed_v1_0.M65K.gfa.tsv.gz +e4a9ab68db1e07c798982f95a1bad369 ./cicre.Besev079.gnm1.ann1.F01Z.gcv_genes.gff3.gz +7a03c6f4ade0d8b517c153d6e11a2963 ./cicre.Besev079.gnm1.ann1.F01Z.gene_models_main.gff3.gz.tbi +0663a42dbb8368edb0527d235922ba95 ./cicre.Besev079.gnm1.ann1.F01Z.cds.fna.gz +a57e98a1a1fff2b460e437c4b64a1240 ./cicre.Besev079.gnm1.ann1.F01Z.mrna.fna.gz +d79d8406de728b09ef83d32f41735df8 ./cicre.Besev079.gnm1.ann1.F01Z.gene_models_main.gff3.gz diff --git a/Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/MANIFEST.Besev079.gnm1.ann1.F01Z.yml b/Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/MANIFEST.Besev079.gnm1.ann1.F01Z.yml index 44c1e3cd..f212471f 100644 --- a/Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/MANIFEST.Besev079.gnm1.ann1.F01Z.yml +++ b/Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/MANIFEST.Besev079.gnm1.ann1.F01Z.yml @@ -12,6 +12,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: cicre.Besev079.gnm1.ann1.F01Z.legfed_v1_0.M65K.gfa.tsv.gz description: gene family assignments - name: cicre.Besev079.gnm1.ann1.F01Z.mrna.fna.gz diff --git a/Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/CHECKSUM.IG_72815.gnm1.ann1.R90F.md5 b/Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/CHECKSUM.IG_72815.gnm1.ann1.R90F.md5 index e871eada..67bd870a 100644 --- a/Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/CHECKSUM.IG_72815.gnm1.ann1.R90F.md5 +++ b/Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/CHECKSUM.IG_72815.gnm1.ann1.R90F.md5 @@ -1,18 +1,22 @@ -f004acadb6fcb0930595dedd95afdd9b Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.cds.fna.gz -1c8aef304cc1a079cc6ba2e1060ab7b2 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.cds.fna.gz.fai -822bfdc9fed5bc0b31adf19697cd14e3 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.cds.fna.gz.gzi -b64e9ff16d7228d13a01446823cbd7c6 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.gene_models_main.bed.gz -453d02df954f8186343bdeef68b4f1e2 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.gene_models_main.bed.gz.tbi -c3b6365e59cdf83622265c263a1b4b7d Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.gene_models_main.gff3.gz -edbd2bf92d8e91a8558a80c344fb53fc Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.gene_models_main.gff3.gz.tbi -59f55963a2e06d3f6e4dc5d80b9ae98b Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.id_map -39bdffab00eee38c20ba83f602ffa2a6 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.iprscan.gff3.gz -ed60645256fa5e6915937700b1acc859 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.iprscan.gff3.gz.tbi -63fd4887d1031591113fb4379241007d Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.legfed_v1_0.M65K.gfa.tsv.gz -e3272156f4f8662abf5cb410767b27a6 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.mrna.fna.gz -f752d03fc3d683d1df859ed20e03f51c Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.mrna.fna.gz.fai -8a12f4d3bf44aa894785b1bceafbc84b Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.mrna.fna.gz.gzi -1de166346eff1785d74b093fb3138a0f Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.protein.faa.gz -055ec40a041cfb0b737892efba49f090 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.protein.faa.gz.fai -e493dd66d22338e36f4d1d6a3bd896bc Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.protein.faa.gz.gzi -bc44a672285d14ad2257cdbd1da832f4 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/README.IG_72815.gnm1.ann1.R90F.yml +e3272156f4f8662abf5cb410767b27a6 ./lener.IG_72815.gnm1.ann1.R90F.mrna.fna.gz +12c8a3f2c8ed09a9c030ca71fd4fcda4 ./BUSCO/lener.IG_72815.gnm1.ann1.R90F.busco.fabales_odb10.short_summary.txt +5f7084f09ce6e197aaf64d0e566d1855 ./BUSCO/lener.IG_72815.gnm1.ann1.R90F.busco.fabales_odb10.full_table.tsv.gz +dce8b349b7118326a783e98f6493ad9e ./BUSCO/lener.IG_72815.gnm1.ann1.R90F.busco.fabales_odb10.short_summary.json +b64e9ff16d7228d13a01446823cbd7c6 ./lener.IG_72815.gnm1.ann1.R90F.gene_models_main.bed.gz +39bdffab00eee38c20ba83f602ffa2a6 ./lener.IG_72815.gnm1.ann1.R90F.iprscan.gff3.gz +ed60645256fa5e6915937700b1acc859 ./lener.IG_72815.gnm1.ann1.R90F.iprscan.gff3.gz.tbi +f46f53b190c4fb7b582ad3c25e49f619 ./MANIFEST.IG_72815.gnm1.ann1.R90F.yml +1c8aef304cc1a079cc6ba2e1060ab7b2 ./lener.IG_72815.gnm1.ann1.R90F.cds.fna.gz.fai +63fd4887d1031591113fb4379241007d ./lener.IG_72815.gnm1.ann1.R90F.legfed_v1_0.M65K.gfa.tsv.gz +453d02df954f8186343bdeef68b4f1e2 ./lener.IG_72815.gnm1.ann1.R90F.gene_models_main.bed.gz.tbi +f752d03fc3d683d1df859ed20e03f51c ./lener.IG_72815.gnm1.ann1.R90F.mrna.fna.gz.fai +055ec40a041cfb0b737892efba49f090 ./lener.IG_72815.gnm1.ann1.R90F.protein.faa.gz.fai +f004acadb6fcb0930595dedd95afdd9b ./lener.IG_72815.gnm1.ann1.R90F.cds.fna.gz +c3b6365e59cdf83622265c263a1b4b7d ./lener.IG_72815.gnm1.ann1.R90F.gene_models_main.gff3.gz +bc44a672285d14ad2257cdbd1da832f4 ./README.IG_72815.gnm1.ann1.R90F.yml +8a12f4d3bf44aa894785b1bceafbc84b ./lener.IG_72815.gnm1.ann1.R90F.mrna.fna.gz.gzi +e493dd66d22338e36f4d1d6a3bd896bc ./lener.IG_72815.gnm1.ann1.R90F.protein.faa.gz.gzi +59f55963a2e06d3f6e4dc5d80b9ae98b ./lener.IG_72815.gnm1.ann1.R90F.id_map +1de166346eff1785d74b093fb3138a0f ./lener.IG_72815.gnm1.ann1.R90F.protein.faa.gz +822bfdc9fed5bc0b31adf19697cd14e3 ./lener.IG_72815.gnm1.ann1.R90F.cds.fna.gz.gzi +edbd2bf92d8e91a8558a80c344fb53fc ./lener.IG_72815.gnm1.ann1.R90F.gene_models_main.gff3.gz.tbi diff --git a/Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/MANIFEST.IG_72815.gnm1.ann1.R90F.yml b/Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/MANIFEST.IG_72815.gnm1.ann1.R90F.yml index c481a032..5fd674ab 100644 --- a/Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/MANIFEST.IG_72815.gnm1.ann1.R90F.yml +++ b/Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/MANIFEST.IG_72815.gnm1.ann1.R90F.yml @@ -10,6 +10,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: lener.IG_72815.gnm1.ann1.R90F.iprscan.gff3.gz description: InterPro functional information for genes (gff format) - name: lener.IG_72815.gnm1.ann1.R90F.legfed_v1_0.M65K.gfa.tsv.gz diff --git a/Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/CHECKSUM.Tanjil.gnm1.ann1.nnV9.md5 b/Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/CHECKSUM.Tanjil.gnm1.ann1.nnV9.md5 index 657fd3e2..5c5d37e1 100644 --- a/Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/CHECKSUM.Tanjil.gnm1.ann1.nnV9.md5 +++ b/Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/CHECKSUM.Tanjil.gnm1.ann1.nnV9.md5 @@ -2,7 +2,7 @@ d0aa61cc3a4299138d7bed81de0a3be4 ./README.Tanjil.gnm1.ann1.nnV9.yml fe1e844af2e08de1079a6b5e6d8a36b1 ./lupan.Tanjil.gnm1.ann1.nnV9.gene_models_main.gff3.gz.tbi e7afe368995cd564cfdf4be1e4fc7924 ./lupan.Tanjil.gnm1.ann1.nnV9.cds.fna.gz -25c0008bc9a25a9d14ae6feeb266c3d7 ./MANIFEST.Tanjil.gnm1.ann1.nnV9.yml +f085d8e16b599900f743a32037029524 ./MANIFEST.Tanjil.gnm1.ann1.nnV9.yml bbc881277fac163b964b24d227a8632d ./lupan.Tanjil.gnm1.ann1.nnV9.mrna.fna.gz.gzi 1d583273c0b7c5b7cbee8d8cc6a1b180 ./lupan.Tanjil.gnm1.ann1.nnV9.legfed_v1_0.M65K.gfa.tsv.gz aac34b05e9110bf0c329092c34498409 ./lupan.Tanjil.gnm1.ann1.nnV9.gene_models_miRNA.gff3.gz diff --git a/Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/MANIFEST.Tanjil.gnm1.ann1.nnV9.yml b/Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/MANIFEST.Tanjil.gnm1.ann1.nnV9.yml index 55ae601d..2f447aa9 100644 --- a/Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/MANIFEST.Tanjil.gnm1.ann1.nnV9.yml +++ b/Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/MANIFEST.Tanjil.gnm1.ann1.nnV9.yml @@ -10,6 +10,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: lupan.Tanjil.gnm1.ann1.nnV9.gene_models_miRNA.gff3.gz description: MISSING - name: lupan.Tanjil.gnm1.ann1.nnV9.gene_models_pchr_plus_scaff.gff3.gz diff --git a/Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/CHECKSUM.A17.gnm5.ann1_6.L2RX.md5 b/Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/CHECKSUM.A17.gnm5.ann1_6.L2RX.md5 index abe9830f..b44d6c4f 100644 --- a/Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/CHECKSUM.A17.gnm5.ann1_6.L2RX.md5 +++ b/Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/CHECKSUM.A17.gnm5.ann1_6.L2RX.md5 @@ -1,23 +1,25 @@ -65f695344a0d9b9d2663332501c49b03 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/CHANGES.A17.gnm5.ann1_6.L2RX.txt -39e506f53607073cc0607f51273d3270 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/MANIFEST.A17.gnm5.ann1_6.L2RX.correspondence.yml -1c0c8951542ae4eac1f80ad374dc31cd Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/MANIFEST.A17.gnm5.ann1_6.L2RX.descriptions.yml -68c26b2997149796d87be7128661e8cc Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.cds.fna.gz -cf8e4c659e5fd4e1d1c4228906013294 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.cds.fna.gz.fai -6f50d770a0a584eb92b01843b6631ac5 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.cds.fna.gz.gzi -0465031983e2e07ed3cbaf944b57cbe2 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.gene_models_main.bed.gz -328c665a1488e2dcec87820e6bb39d6f Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.gene_models_main.bed.gz.tbi -a957419a9e9cf078c5d821aca04939d3 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.gene_models_main.gff3.gz -498c7bc22878fba0d0228faf54e38493 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.gene_models_main.gff3.gz.tbi -ae1df8d5934cd69a41d73d089112d420 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.iprscan.gff3.gz -481dd9d86ddca977e96e6c317d352374 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.iprscan.gff3.gz.tbi -11ce296a559a2ceb00f004ca2882b3c1 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.legfed_v1_0.M65K.gfa.tsv.gz -f3664c9df68c3c740a0305477253f2d2 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.mrna.fna.gz -b62f39c7251ad63727e366e51e54dec3 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.mrna.fna.gz.fai -c40e752c2b697e7c3f5c85a4ae051ac1 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.mrna.fna.gz.gzi -bb9e167d8c388913e7ec044f9ad6d914 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.phytozome_10_2.HFNR.gfa.tsv.gz -0c4465bbed01e159c4e6031ab0dde8c6 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.protein.faa.gz -1ec70a9f1cadd641b87984aefe852ac5 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.protein.faa.gz.fai -491e5a53aacbeef78ef1a1abe9a6d3c0 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.protein.faa.gz.gzi -c2f12edcd057fce0d3746bd73fad158b Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.repeats.gff3.gz -198cc37c699b3ccf757df0aab8b27402 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.repeats.gff3.gz.tbi -3c9d27f50259d577ac07627c9641c226 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/README.A17.gnm5.ann1_6.L2RX.yml +b62f39c7251ad63727e366e51e54dec3 ./medtr.A17.gnm5.ann1_6.L2RX.mrna.fna.gz.fai +0465031983e2e07ed3cbaf944b57cbe2 ./medtr.A17.gnm5.ann1_6.L2RX.gene_models_main.bed.gz +4e32ac314aca3bf035419711cdaa20f0 ./MANIFEST.A17.gnm5.ann1_6.L2RX.yml +c2f12edcd057fce0d3746bd73fad158b ./medtr.A17.gnm5.ann1_6.L2RX.repeats.gff3.gz +cf8e4c659e5fd4e1d1c4228906013294 ./medtr.A17.gnm5.ann1_6.L2RX.cds.fna.gz.fai +ae1df8d5934cd69a41d73d089112d420 ./medtr.A17.gnm5.ann1_6.L2RX.iprscan.gff3.gz +1ec70a9f1cadd641b87984aefe852ac5 ./medtr.A17.gnm5.ann1_6.L2RX.protein.faa.gz.fai +3c9d27f50259d577ac07627c9641c226 ./README.A17.gnm5.ann1_6.L2RX.yml +491e5a53aacbeef78ef1a1abe9a6d3c0 ./medtr.A17.gnm5.ann1_6.L2RX.protein.faa.gz.gzi +481dd9d86ddca977e96e6c317d352374 ./medtr.A17.gnm5.ann1_6.L2RX.iprscan.gff3.gz.tbi +bb9e167d8c388913e7ec044f9ad6d914 ./medtr.A17.gnm5.ann1_6.L2RX.phytozome_10_2.HFNR.gfa.tsv.gz +6f50d770a0a584eb92b01843b6631ac5 ./medtr.A17.gnm5.ann1_6.L2RX.cds.fna.gz.gzi +328c665a1488e2dcec87820e6bb39d6f ./medtr.A17.gnm5.ann1_6.L2RX.gene_models_main.bed.gz.tbi +0c4465bbed01e159c4e6031ab0dde8c6 ./medtr.A17.gnm5.ann1_6.L2RX.protein.faa.gz +11ce296a559a2ceb00f004ca2882b3c1 ./medtr.A17.gnm5.ann1_6.L2RX.legfed_v1_0.M65K.gfa.tsv.gz +198cc37c699b3ccf757df0aab8b27402 ./medtr.A17.gnm5.ann1_6.L2RX.repeats.gff3.gz.tbi +e5ac5c09db5acf36507aae87a12a9054 ./BUSCO/medtr.A17.gnm5.ann1_6.L2RX.busco.fabales_odb10.short_summary.txt +65d852b8e1b3aeaedd1628125d428294 ./BUSCO/medtr.A17.gnm5.ann1_6.L2RX.busco.fabales_odb10.full_table.tsv.gz +2d43d701a62a6044c129db703bb55d3f ./BUSCO/medtr.A17.gnm5.ann1_6.L2RX.busco.fabales_odb10.short_summary.json +68c26b2997149796d87be7128661e8cc ./medtr.A17.gnm5.ann1_6.L2RX.cds.fna.gz +c40e752c2b697e7c3f5c85a4ae051ac1 ./medtr.A17.gnm5.ann1_6.L2RX.mrna.fna.gz.gzi +498c7bc22878fba0d0228faf54e38493 ./medtr.A17.gnm5.ann1_6.L2RX.gene_models_main.gff3.gz.tbi +65f695344a0d9b9d2663332501c49b03 ./CHANGES.A17.gnm5.ann1_6.L2RX.txt +f3664c9df68c3c740a0305477253f2d2 ./medtr.A17.gnm5.ann1_6.L2RX.mrna.fna.gz +a957419a9e9cf078c5d821aca04939d3 ./medtr.A17.gnm5.ann1_6.L2RX.gene_models_main.gff3.gz diff --git a/Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/MANIFEST.A17.gnm5.ann1_6.L2RX.yml b/Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/MANIFEST.A17.gnm5.ann1_6.L2RX.yml index 1d25d6cf..30af6d31 100644 --- a/Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/MANIFEST.A17.gnm5.ann1_6.L2RX.yml +++ b/Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/MANIFEST.A17.gnm5.ann1_6.L2RX.yml @@ -12,6 +12,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: medtr.A17.gnm5.ann1_6.L2RX.iprscan.gff3.gz description: InterPro functional information for genes (gff format) - name: medtr.A17.gnm5.ann1_6.L2RX.legfed_v1_0.M65K.gfa.tsv.gz diff --git a/Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/CHECKSUM.A17_HM341.gnm4.ann2.G3ZY.md5 b/Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/CHECKSUM.A17_HM341.gnm4.ann2.G3ZY.md5 index 418a7d28..95ed5302 100644 --- a/Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/CHECKSUM.A17_HM341.gnm4.ann2.G3ZY.md5 +++ b/Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/CHECKSUM.A17_HM341.gnm4.ann2.G3ZY.md5 @@ -1,28 +1,30 @@ -067dc92bda9cc764a7d1ff22d70f52be Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/CHANGES.A17_HM341.gnm4.ann2.G3ZY.txt -9d12ff8b52e2b7e5e92e0f0b30d223c6 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/MANIFEST.A17_HM341.gnm4.ann2.G3ZY.correspondence.yml -622fa5fbe664796db5aa6e3d5850e0af Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/MANIFEST.A17_HM341.gnm4.ann2.G3ZY.descriptions.yml -10bc0b7c81bd79f9c8fadc2c2ce6d95a Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.cds_primary.fna.gz -71d1662ee2504b46e24df2e0119e7d7f Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.cds_primary.fna.gz.fai -2a64ed84de329dd7d623c763a7e7eb8b Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.cds_primary.fna.gz.gzi -145887bddcbc7de4b5d056c9c3e555c8 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.cds.fna.gz -aa0e7a1aca66567d23ec854c0bf1e24c Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.cds.fna.gz.fai -93e3cace57ec45999d3b04911251a0ad Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.cds.fna.gz.gzi -dc13e91942195f25c4080dac46588a81 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.gene_models_main.bed.gz -c23cd253c75526cf41bf45c6d92a1704 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.gene_models_main.bed.gz.tbi -5270b6602a99f8a8b4d00c107514f711 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.gene_models_main.gff3.gz -5fd5b195df30e939c6a84e2eeb0ea5af Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.gene_models_main.gff3.gz.tbi -5fa4f0321bc661349ddeaa35a71c8b2b Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.legfed_v1_0.M65K.gfa.tsv.gz -415f3d7f0119eeea924600e030dd9a0c Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.mrna.fna.gz -5e5db3528c79d1cf607736dcb0994aeb Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.mrna.fna.gz.fai -72592a9bba498497430473534f80098c Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.mrna.fna.gz.gzi -7241c4e13347434d6a7c645ff2a516af Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.phytozome_10_2.HFNR.gfa.tsv.gz -01d51265a8a03c9194a82df7e06c604a Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.protein_primary.faa.gz -07e0a86c6a3d17e0aee61d8e58c5ac01 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.protein_primary.faa.gz.fai -e3414922ded97191d7ee0169ffa01317 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.protein_primary.faa.gz.gzi -dbb690b9d115fbb7b9130cc27d13e09a Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.protein.faa.gz -e26e063e3a6a27b78b65a6440a5eec86 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.protein.faa.gz.fai -22dd551111e9b1c51b25aa1bd77f49c9 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.protein.faa.gz.gzi -fec7852506116dbc416a6422244969ba Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.trna.fna.gz -2331ea0683f472d9429e1b334515c2d3 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.trna.fna.gz.fai -74f5d933807e573c998f8813622ad425 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.trna.fna.gz.gzi -a1d6d3fe502e38e1d44b7d729a3ddc21 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/README.A17_HM341.gnm4.ann2.G3ZY.yml +01d51265a8a03c9194a82df7e06c604a ./medtr.A17_HM341.gnm4.ann2.G3ZY.protein_primary.faa.gz +fec7852506116dbc416a6422244969ba ./medtr.A17_HM341.gnm4.ann2.G3ZY.trna.fna.gz +7241c4e13347434d6a7c645ff2a516af ./medtr.A17_HM341.gnm4.ann2.G3ZY.phytozome_10_2.HFNR.gfa.tsv.gz +2a64ed84de329dd7d623c763a7e7eb8b ./medtr.A17_HM341.gnm4.ann2.G3ZY.cds_primary.fna.gz.gzi +f47bce682c56853a2fcf357a21ba17af ./MANIFEST.A17_HM341.gnm4.ann2.G3ZY.yml +10bc0b7c81bd79f9c8fadc2c2ce6d95a ./medtr.A17_HM341.gnm4.ann2.G3ZY.cds_primary.fna.gz +93b26dd2cdf0cb5d5a508732bf212f67 ./BUSCO/medtr.A17_HM341.gnm4.ann2.G3ZY.busco.fabales_odb10.short_summary.json +e34bcf34bc17e32bed2308dbb016f08a ./BUSCO/medtr.A17_HM341.gnm4.ann2.G3ZY.busco.fabales_odb10.full_table.tsv.gz +1072e219f3df4eea8990bf99390a9314 ./BUSCO/medtr.A17_HM341.gnm4.ann2.G3ZY.busco.fabales_odb10.short_summary.txt +72592a9bba498497430473534f80098c ./medtr.A17_HM341.gnm4.ann2.G3ZY.mrna.fna.gz.gzi +74f5d933807e573c998f8813622ad425 ./medtr.A17_HM341.gnm4.ann2.G3ZY.trna.fna.gz.gzi +e26e063e3a6a27b78b65a6440a5eec86 ./medtr.A17_HM341.gnm4.ann2.G3ZY.protein.faa.gz.fai +aa0e7a1aca66567d23ec854c0bf1e24c ./medtr.A17_HM341.gnm4.ann2.G3ZY.cds.fna.gz.fai +dc13e91942195f25c4080dac46588a81 ./medtr.A17_HM341.gnm4.ann2.G3ZY.gene_models_main.bed.gz +a1d6d3fe502e38e1d44b7d729a3ddc21 ./README.A17_HM341.gnm4.ann2.G3ZY.yml +e3414922ded97191d7ee0169ffa01317 ./medtr.A17_HM341.gnm4.ann2.G3ZY.protein_primary.faa.gz.gzi +067dc92bda9cc764a7d1ff22d70f52be ./CHANGES.A17_HM341.gnm4.ann2.G3ZY.txt +07e0a86c6a3d17e0aee61d8e58c5ac01 ./medtr.A17_HM341.gnm4.ann2.G3ZY.protein_primary.faa.gz.fai +dbb690b9d115fbb7b9130cc27d13e09a ./medtr.A17_HM341.gnm4.ann2.G3ZY.protein.faa.gz +c23cd253c75526cf41bf45c6d92a1704 ./medtr.A17_HM341.gnm4.ann2.G3ZY.gene_models_main.bed.gz.tbi +5fa4f0321bc661349ddeaa35a71c8b2b ./medtr.A17_HM341.gnm4.ann2.G3ZY.legfed_v1_0.M65K.gfa.tsv.gz +5270b6602a99f8a8b4d00c107514f711 ./medtr.A17_HM341.gnm4.ann2.G3ZY.gene_models_main.gff3.gz +22dd551111e9b1c51b25aa1bd77f49c9 ./medtr.A17_HM341.gnm4.ann2.G3ZY.protein.faa.gz.gzi +93e3cace57ec45999d3b04911251a0ad ./medtr.A17_HM341.gnm4.ann2.G3ZY.cds.fna.gz.gzi +145887bddcbc7de4b5d056c9c3e555c8 ./medtr.A17_HM341.gnm4.ann2.G3ZY.cds.fna.gz +2331ea0683f472d9429e1b334515c2d3 ./medtr.A17_HM341.gnm4.ann2.G3ZY.trna.fna.gz.fai +5fd5b195df30e939c6a84e2eeb0ea5af ./medtr.A17_HM341.gnm4.ann2.G3ZY.gene_models_main.gff3.gz.tbi +5e5db3528c79d1cf607736dcb0994aeb ./medtr.A17_HM341.gnm4.ann2.G3ZY.mrna.fna.gz.fai +415f3d7f0119eeea924600e030dd9a0c ./medtr.A17_HM341.gnm4.ann2.G3ZY.mrna.fna.gz +71d1662ee2504b46e24df2e0119e7d7f ./medtr.A17_HM341.gnm4.ann2.G3ZY.cds_primary.fna.gz.fai diff --git a/Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/MANIFEST.A17_HM341.gnm4.ann2.G3ZY.yml b/Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/MANIFEST.A17_HM341.gnm4.ann2.G3ZY.yml index c6b3cf88..35a2d8f8 100644 --- a/Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/MANIFEST.A17_HM341.gnm4.ann2.G3ZY.yml +++ b/Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/MANIFEST.A17_HM341.gnm4.ann2.G3ZY.yml @@ -16,6 +16,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: medtr.A17_HM341.gnm4.ann2.G3ZY.legfed_v1_0.M65K.gfa.tsv.gz description: gene family assignments - name: medtr.A17_HM341.gnm4.ann2.G3ZY.mrna.fna.gz diff --git a/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/CHECKSUM.R108.gnmHiC_1.ann1.Y8NH.md5 b/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/CHECKSUM.R108.gnmHiC_1.ann1.Y8NH.md5 index 36b69b82..b9fef739 100644 --- a/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/CHECKSUM.R108.gnmHiC_1.ann1.Y8NH.md5 +++ b/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/CHECKSUM.R108.gnmHiC_1.ann1.Y8NH.md5 @@ -10,7 +10,7 @@ b893729ec3525091b5ba4d2618bb334d ./medtr.R108.gnmHiC_1.ann1.Y8NH.id_map.txt.gz ec355d925e15df38cda9409773b837a2 ./medtr.R108.gnmHiC_1.ann1.Y8NH.legfed_v1_0.M65K.gfa.tsv.gz 620df0ce4d071250ae466aeab384da05 ./medtr.R108.gnmHiC_1.ann1.Y8NH.gene_models_main.bed.gz.tbi ee37dfe32562f7cbd65afe1d2cffa6a2 ./medtr.R108.gnmHiC_1.ann1.Y8NH.mrna.fna.gz -19c3067fa634ffb7d6cd4b49180a7947 ./MANIFEST.R108.gnmHiC_1.ann1.Y8NH.correspondence.yml +61ac0d8dbe7b4b360a011b95ada35121 ./MANIFEST.R108.gnmHiC_1.ann1.Y8NH.yml 18385c357c379909110a251e18110573 ./medtr.R108.gnmHiC_1.ann1.Y8NH.cds.fna.gz 55f56f56c230446530339b0ffc9bff5c ./medtr.R108.gnmHiC_1.ann1.Y8NH.iprscan.gff3.gz 298402957f3f2eb07d1007603a8a567c ./medtr.R108.gnmHiC_1.ann1.Y8NH.protein.faa.gz @@ -19,6 +19,5 @@ c407d4d6511a652b5ac09b0154487842 ./BUSCO/medtr.R108.gnmHiC_1.ann1.Y8NH.busco.fa f707fe3037de9c4fad235eb06ae8f9ac ./BUSCO/medtr.R108.gnmHiC_1.ann1.Y8NH.busco.fabales_odb10.full_table.tsv.gz 1d76f951b5ddcc96b3f8863985d33f31 ./medtr.R108.gnmHiC_1.ann1.Y8NH.cds.fna.gz.gzi 38bfd6526e8cc52af8e53b2879186b3e ./medtr.R108.gnmHiC_1.ann1.Y8NH.protein.faa.gz.fai -595cf02828d981b1a55c67aabcacb747 ./MANIFEST.R108.gnmHiC_1.ann1.Y8NH.descriptions.yml 7d19b425e88997232ce5c11efdc41390 ./medtr.R108.gnmHiC_1.ann1.Y8NH.mrna.fna.gz.fai 700f788b864f2c4e988ed7ef9a948ad8 ./medtr.R108.gnmHiC_1.ann1.Y8NH.iprscan.gff3.gz.tbi diff --git a/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/MANIFEST.R108.gnmHiC_1.ann1.Y8NH.yml b/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/MANIFEST.R108.gnmHiC_1.ann1.Y8NH.yml index 64c02842..031dc25d 100644 --- a/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/MANIFEST.R108.gnmHiC_1.ann1.Y8NH.yml +++ b/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/MANIFEST.R108.gnmHiC_1.ann1.Y8NH.yml @@ -10,6 +10,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: medtr.R108.gnmHiC_1.ann1.Y8NH.id_map.txt.gz description: MISSING - name: medtr.R108.gnmHiC_1.ann1.Y8NH.iprscan.gff3.gz diff --git a/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/CHECKSUM.R108_HM340.gnm1.ann1.85YW.md5 b/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/CHECKSUM.R108_HM340.gnm1.ann1.85YW.md5 index 14373cde..10e74853 100644 --- a/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/CHECKSUM.R108_HM340.gnm1.ann1.85YW.md5 +++ b/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/CHECKSUM.R108_HM340.gnm1.ann1.85YW.md5 @@ -1,28 +1,30 @@ -840147eb64323e986bf6c32ae7d56818 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/CHANGES.R108_HM340.gnm1.ann1.85YW.txt -92422c8fdc0bb6851206dd04801d3212 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/MANIFEST.R108_HM340.gnm1.ann1.85YW.correspondence.yml -ad009498e78e9b6f6ddc3576568af2ba Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/MANIFEST.R108_HM340.gnm1.ann1.85YW.descriptions.yml -d2123f9778e2b517709ca5d33a0b40d2 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.cds_primary.fna.gz -0e9f6339ded7a3ce8ff2c8dd7a938fe2 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.cds_primary.fna.gz.fai -db3dd5d222cee79d47a525c4c2b18991 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.cds_primary.fna.gz.gzi -95cd444fef7d9ea3eb69d44e9f467bfa Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.cds.fna.gz -e3134886c60a91d67bdcb4e0fee465b5 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.cds.fna.gz.fai -fe6d6009a5aafad8313a1d950b661a20 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.cds.fna.gz.gzi -7eebc2ba0784056562d9084ab104d5a0 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.gcv_genes.gff3.gz -81e44d41d73d6f40e75546f3f605cb2c Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.gene_models_main.bed.gz -0ab1b16e6403cfdf8fafe8a50d35ee74 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.gene_models_main.bed.gz.tbi -76461836d8f9708114d640bfe0d2fad1 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.gene_models_main.gff3.gz -9e274dec25fd35f52e8cbda43661a461 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.gene_models_main.gff3.gz.tbi -6f8bc370e4bfdd95572940e343dfcbf2 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.iprscan.gff3.gz -56caa2e454443330af191b281cbb73b1 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.iprscan.gff3.gz.tbi -cf12c3f6e5b0d6e667fb9999e03061f1 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.legfed_v1_0.M65K.gfa.tsv.gz -7fea7540818087f82289f4f5b0af3af3 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.mrna.fna.gz -1abd004e9708660396249a88bcce55bd Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.mrna.fna.gz.fai -bae1913b7a7d0461c88c7151a28af3af Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.mrna.fna.gz.gzi -3915888aa6ae2c1a54c59a67a5f54c4f Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.phytozome_10_2.HFNR.gfa.tsv.gz -0529dd11a8aa5f7b83f7a57ebe0919ec Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.protein_primary.faa.gz -86632d53f6ce4c41c894ba4982c2dc2c Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.protein_primary.faa.gz.fai -129da2f9459a04411159d280e1e281c6 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.protein_primary.faa.gz.gzi -126150f9dbca92de7e990dd553dfee80 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.protein.faa.gz -b59487d3591d0def7f72b4fa550ee807 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.protein.faa.gz.fai -2592f09f0f1bb4c8c8c9b8401e3f13ab Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.protein.faa.gz.gzi -8953760d64676d479079a5bd944cb679 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/README.R108_HM340.gnm1.ann1.85YW.yml +56caa2e454443330af191b281cbb73b1 ./medtr.R108_HM340.gnm1.ann1.85YW.iprscan.gff3.gz.tbi +0529dd11a8aa5f7b83f7a57ebe0919ec ./medtr.R108_HM340.gnm1.ann1.85YW.protein_primary.faa.gz +b59487d3591d0def7f72b4fa550ee807 ./medtr.R108_HM340.gnm1.ann1.85YW.protein.faa.gz.fai +db3dd5d222cee79d47a525c4c2b18991 ./medtr.R108_HM340.gnm1.ann1.85YW.cds_primary.fna.gz.gzi +bae1913b7a7d0461c88c7151a28af3af ./medtr.R108_HM340.gnm1.ann1.85YW.mrna.fna.gz.gzi +e3134886c60a91d67bdcb4e0fee465b5 ./medtr.R108_HM340.gnm1.ann1.85YW.cds.fna.gz.fai +76461836d8f9708114d640bfe0d2fad1 ./medtr.R108_HM340.gnm1.ann1.85YW.gene_models_main.gff3.gz +d2123f9778e2b517709ca5d33a0b40d2 ./medtr.R108_HM340.gnm1.ann1.85YW.cds_primary.fna.gz +986cf311f365f17240c2e777a53c67e0 ./BUSCO/medtr.R108_HM340.gnm1.ann1.85YW.busco.fabales_odb10.short_summary.json +eec6b45ac3d6e81e47908eedb3b838f9 ./BUSCO/medtr.R108_HM340.gnm1.ann1.85YW.busco.fabales_odb10.short_summary.txt +551047bca62cfabad7c6e5636695347e ./BUSCO/medtr.R108_HM340.gnm1.ann1.85YW.busco.fabales_odb10.full_table.tsv.gz +7eebc2ba0784056562d9084ab104d5a0 ./medtr.R108_HM340.gnm1.ann1.85YW.gcv_genes.gff3.gz +86632d53f6ce4c41c894ba4982c2dc2c ./medtr.R108_HM340.gnm1.ann1.85YW.protein_primary.faa.gz.fai +0ab1b16e6403cfdf8fafe8a50d35ee74 ./medtr.R108_HM340.gnm1.ann1.85YW.gene_models_main.bed.gz.tbi +129da2f9459a04411159d280e1e281c6 ./medtr.R108_HM340.gnm1.ann1.85YW.protein_primary.faa.gz.gzi +3ceb9a9e7312cdf4efebc9aa7874991a ./MANIFEST.R108_HM340.gnm1.ann1.85YW.yml +cf12c3f6e5b0d6e667fb9999e03061f1 ./medtr.R108_HM340.gnm1.ann1.85YW.legfed_v1_0.M65K.gfa.tsv.gz +6f8bc370e4bfdd95572940e343dfcbf2 ./medtr.R108_HM340.gnm1.ann1.85YW.iprscan.gff3.gz +9e274dec25fd35f52e8cbda43661a461 ./medtr.R108_HM340.gnm1.ann1.85YW.gene_models_main.gff3.gz.tbi +840147eb64323e986bf6c32ae7d56818 ./CHANGES.R108_HM340.gnm1.ann1.85YW.txt +95cd444fef7d9ea3eb69d44e9f467bfa ./medtr.R108_HM340.gnm1.ann1.85YW.cds.fna.gz +fe6d6009a5aafad8313a1d950b661a20 ./medtr.R108_HM340.gnm1.ann1.85YW.cds.fna.gz.gzi +3915888aa6ae2c1a54c59a67a5f54c4f ./medtr.R108_HM340.gnm1.ann1.85YW.phytozome_10_2.HFNR.gfa.tsv.gz +81e44d41d73d6f40e75546f3f605cb2c ./medtr.R108_HM340.gnm1.ann1.85YW.gene_models_main.bed.gz +126150f9dbca92de7e990dd553dfee80 ./medtr.R108_HM340.gnm1.ann1.85YW.protein.faa.gz +1abd004e9708660396249a88bcce55bd ./medtr.R108_HM340.gnm1.ann1.85YW.mrna.fna.gz.fai +7fea7540818087f82289f4f5b0af3af3 ./medtr.R108_HM340.gnm1.ann1.85YW.mrna.fna.gz +0e9f6339ded7a3ce8ff2c8dd7a938fe2 ./medtr.R108_HM340.gnm1.ann1.85YW.cds_primary.fna.gz.fai +2592f09f0f1bb4c8c8c9b8401e3f13ab ./medtr.R108_HM340.gnm1.ann1.85YW.protein.faa.gz.gzi +8953760d64676d479079a5bd944cb679 ./README.R108_HM340.gnm1.ann1.85YW.yml diff --git a/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/MANIFEST.R108_HM340.gnm1.ann1.85YW.yml b/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/MANIFEST.R108_HM340.gnm1.ann1.85YW.yml index cf73d064..dd1870c3 100644 --- a/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/MANIFEST.R108_HM340.gnm1.ann1.85YW.yml +++ b/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/MANIFEST.R108_HM340.gnm1.ann1.85YW.yml @@ -18,6 +18,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: medtr.R108_HM340.gnm1.ann1.85YW.iprscan.gff3.gz description: InterPro functional information for genes (gff format) - name: medtr.R108_HM340.gnm1.ann1.85YW.legfed_v1_0.M65K.gfa.tsv.gz diff --git a/Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/CHECKSUM.W6_15578.gnm2.ann1.LVZ1.md5 b/Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/CHECKSUM.W6_15578.gnm2.ann1.LVZ1.md5 index 2fb7487c..65a9bc74 100644 --- a/Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/CHECKSUM.W6_15578.gnm2.ann1.LVZ1.md5 +++ b/Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/CHECKSUM.W6_15578.gnm2.ann1.LVZ1.md5 @@ -1,28 +1,30 @@ -0dd0b9bc16c111527820fcbb76462d35 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/CHANGES.W6_15578.gnm2.ann1.LVZ1.txt -845cef73d0e0aaff82deb8315ea730a5 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/MANIFEST.W6_15578.gnm2.ann1.LVZ1.correspondence.yml -ddcf723e098d67b270175b0f6a6e8136 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/MANIFEST.W6_15578.gnm2.ann1.LVZ1.descriptions.yml -6207013d2a55641ec07b237d9715b718 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.cds_primary.fna.gz -17ba452ab5c89c7cf869ab578aa62204 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.cds_primary.fna.gz.fai -f70222f547b56e347be914ce6add9ec5 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.cds_primary.fna.gz.gzi -13f1be7ba1b9283ac4f20f23495452e9 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.cds.fna.gz -a3d7db7123bd5c73b59c243cb4f75968 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.cds.fna.gz.fai -77ad37f4695cc3e4ab3571b7a4418902 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.cds.fna.gz.gzi -a2a82bdc4fd7192c0c575127d5198561 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.gene_models_main.bed.gz -515eb473c5cd9db3212babd289e9b359 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.gene_models_main.bed.gz.tbi -41c728ddfad67ff81b8a96f35de0b81d Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.gene_models_main.gff3.gz -079b5a9ec3a3b5792bd5505db2de272a Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.gene_models_main.gff3.gz.tbi -8b41e2f133c57092b5a54a846f17c787 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.legfed_v1_0.M65K.gfa.tsv.gz -6029f6a3ad0271711225a817a273daf4 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.mrna_primary.fna.gz -d9e08f96d775cdcdc7eb7e0dc0bc9a4b Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.mrna_primary.fna.gz.fai -c303030818d8b82819620b1a2f4ffb58 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.mrna_primary.fna.gz.gzi -013dd27c1e1ce4e41fc65ce9a2cf6ff5 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.mrna.fna.gz -41a043ab81a72447b07ad903e515e500 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.mrna.fna.gz.fai -d10074b379afcb1200ba7facea377340 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.mrna.fna.gz.gzi -db1e1aeb898d4bc8f32b34d5a2b95641 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.phytozome_defline.txt.gz -2a6aa1b025af17e02c06ce6b40ab62de Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.protein_primary.faa.gz -d579eed7e8f339f0d0f35f6fdd9f9ca6 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.protein_primary.faa.gz.fai -74a7f251c7bda472d28fc37a37d39924 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.protein_primary.faa.gz.gzi -a07a8bf401307d2aac19b2477f38d140 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.protein.faa.gz -5de5ca5396d5c13260f97530a1cdb6f6 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.protein.faa.gz.fai -a9dce8862205301396d920384e46d6d8 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.protein.faa.gz.gzi -3e8df64c8cab64394879f6ed667e99db Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/README.W6_15578.gnm2.ann1.LVZ1.yml +a2a82bdc4fd7192c0c575127d5198561 ./phaac.W6_15578.gnm2.ann1.LVZ1.gene_models_main.bed.gz +c303030818d8b82819620b1a2f4ffb58 ./phaac.W6_15578.gnm2.ann1.LVZ1.mrna_primary.fna.gz.gzi +013dd27c1e1ce4e41fc65ce9a2cf6ff5 ./phaac.W6_15578.gnm2.ann1.LVZ1.mrna.fna.gz +079b5a9ec3a3b5792bd5505db2de272a ./phaac.W6_15578.gnm2.ann1.LVZ1.gene_models_main.gff3.gz.tbi +3e8df64c8cab64394879f6ed667e99db ./README.W6_15578.gnm2.ann1.LVZ1.yml +1f620263e418bc0e22dd21cb6509a790 ./MANIFEST.W6_15578.gnm2.ann1.LVZ1.yml +a3d7db7123bd5c73b59c243cb4f75968 ./phaac.W6_15578.gnm2.ann1.LVZ1.cds.fna.gz.fai +bcaf446fa452e680178648499f585ef5 ./BUSCO/phaac.W6_15578.gnm2.ann1.LVZ1.busco.fabales_odb10.short_summary.json +fc0d5b3eea35e3abffdfd20b57da6e61 ./BUSCO/phaac.W6_15578.gnm2.ann1.LVZ1.busco.fabales_odb10.short_summary.txt +a04aa39d06c4d18fd9664aade464f6c2 ./BUSCO/phaac.W6_15578.gnm2.ann1.LVZ1.busco.fabales_odb10.full_table.tsv.gz +8b41e2f133c57092b5a54a846f17c787 ./phaac.W6_15578.gnm2.ann1.LVZ1.legfed_v1_0.M65K.gfa.tsv.gz +2a6aa1b025af17e02c06ce6b40ab62de ./phaac.W6_15578.gnm2.ann1.LVZ1.protein_primary.faa.gz +6029f6a3ad0271711225a817a273daf4 ./phaac.W6_15578.gnm2.ann1.LVZ1.mrna_primary.fna.gz +515eb473c5cd9db3212babd289e9b359 ./phaac.W6_15578.gnm2.ann1.LVZ1.gene_models_main.bed.gz.tbi +f70222f547b56e347be914ce6add9ec5 ./phaac.W6_15578.gnm2.ann1.LVZ1.cds_primary.fna.gz.gzi +74a7f251c7bda472d28fc37a37d39924 ./phaac.W6_15578.gnm2.ann1.LVZ1.protein_primary.faa.gz.gzi +41a043ab81a72447b07ad903e515e500 ./phaac.W6_15578.gnm2.ann1.LVZ1.mrna.fna.gz.fai +a9dce8862205301396d920384e46d6d8 ./phaac.W6_15578.gnm2.ann1.LVZ1.protein.faa.gz.gzi +d10074b379afcb1200ba7facea377340 ./phaac.W6_15578.gnm2.ann1.LVZ1.mrna.fna.gz.gzi +13f1be7ba1b9283ac4f20f23495452e9 ./phaac.W6_15578.gnm2.ann1.LVZ1.cds.fna.gz +5de5ca5396d5c13260f97530a1cdb6f6 ./phaac.W6_15578.gnm2.ann1.LVZ1.protein.faa.gz.fai +41c728ddfad67ff81b8a96f35de0b81d ./phaac.W6_15578.gnm2.ann1.LVZ1.gene_models_main.gff3.gz +d579eed7e8f339f0d0f35f6fdd9f9ca6 ./phaac.W6_15578.gnm2.ann1.LVZ1.protein_primary.faa.gz.fai +17ba452ab5c89c7cf869ab578aa62204 ./phaac.W6_15578.gnm2.ann1.LVZ1.cds_primary.fna.gz.fai +77ad37f4695cc3e4ab3571b7a4418902 ./phaac.W6_15578.gnm2.ann1.LVZ1.cds.fna.gz.gzi +a07a8bf401307d2aac19b2477f38d140 ./phaac.W6_15578.gnm2.ann1.LVZ1.protein.faa.gz +6207013d2a55641ec07b237d9715b718 ./phaac.W6_15578.gnm2.ann1.LVZ1.cds_primary.fna.gz +db1e1aeb898d4bc8f32b34d5a2b95641 ./phaac.W6_15578.gnm2.ann1.LVZ1.phytozome_defline.txt.gz +d9e08f96d775cdcdc7eb7e0dc0bc9a4b ./phaac.W6_15578.gnm2.ann1.LVZ1.mrna_primary.fna.gz.fai +0dd0b9bc16c111527820fcbb76462d35 ./CHANGES.W6_15578.gnm2.ann1.LVZ1.txt diff --git a/Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/MANIFEST.W6_15578.gnm2.ann1.LVZ1.yml b/Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/MANIFEST.W6_15578.gnm2.ann1.LVZ1.yml index b5d243a2..4fef10c3 100644 --- a/Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/MANIFEST.W6_15578.gnm2.ann1.LVZ1.yml +++ b/Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/MANIFEST.W6_15578.gnm2.ann1.LVZ1.yml @@ -14,6 +14,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - Pacutifolius_580_v1.0.gene.gff3.gz - name: phaac.W6_15578.gnm2.ann1.LVZ1.legfed_v1_0.M65K.gfa.tsv.gz diff --git a/Phaseolus/coccineus/annotations/PHA8298.gnm1.ann1.0Q14/CHECKSUM.PHA8298.gnm1.ann1.0Q14.md5 b/Phaseolus/coccineus/annotations/PHA8298.gnm1.ann1.0Q14/CHECKSUM.PHA8298.gnm1.ann1.0Q14.md5 index 2596e5c2..9272d128 100644 --- a/Phaseolus/coccineus/annotations/PHA8298.gnm1.ann1.0Q14/CHECKSUM.PHA8298.gnm1.ann1.0Q14.md5 +++ b/Phaseolus/coccineus/annotations/PHA8298.gnm1.ann1.0Q14/CHECKSUM.PHA8298.gnm1.ann1.0Q14.md5 @@ -14,10 +14,10 @@ cec0ab7f88f936495d1e4e4bd4881b10 ./phaco.PHA8298.gnm1.ann1.0Q14.annotation_info 436b45756b0e2022dc85960cf96b90ca ./phaco.PHA8298.gnm1.ann1.0Q14.cds_primary.fna.gz.gzi e9aa796d5cd4957de282637c01a6cf8d ./phaco.PHA8298.gnm1.ann1.0Q14.cds.fna.gz.gzi 86e17bd7fd54bc95b7fed18832b252ea ./phaco.PHA8298.gnm1.ann1.0Q14.protein_primary.faa.gz +6209399fce1d606842eb20f4044cccae ./MANIFEST.PHA8298.gnm1.ann1.0Q14.yml 1cb0c5abd3bedccfa9aa379f49c1553c ./phaco.PHA8298.gnm1.ann1.0Q14.legfed_v1_0.M65K.gfa.tsv.gz 945d9c232af74407738a56caf77420dc ./phaco.PHA8298.gnm1.ann1.0Q14.protein.faa.gz fbad357143db44aa9485d824db9aec5e ./README.PHA8298.gnm1.ann1.0Q14.yml -958a73f73aa3d332c8d96cc87b72b1b5 ./MANIFEST.PHA8298.gnm1.ann1.0Q14.correspondence.yml 8c61b55b467351524c7bcfe741125321 ./BUSCO/phaco.PHA8298.gnm1.ann1.0Q14.busco.fabales_odb10.full_table.tsv.gz 7b85946127f63f9ab76e73937dad8b56 ./BUSCO/phaco.PHA8298.gnm1.ann1.0Q14.busco.fabales_odb10.short_summary.txt d75ad559a347afcb8a6f686db0b9b5fb ./BUSCO/phaco.PHA8298.gnm1.ann1.0Q14.busco.fabales_odb10.short_summary.json @@ -34,4 +34,3 @@ c3cfea3c57f31a3f3bf51ef1ff5a1d39 ./phaco.PHA8298.gnm1.ann1.0Q14.mrna_primary.fn 38dfcd73e78a15206be49700769ca329 ./phaco.PHA8298.gnm1.ann1.0Q14.cds.fna.gz aa679077433ff7dece8e36de5cc834c2 ./phaco.PHA8298.gnm1.ann1.0Q14.gene_models_main.gff3.gz d4940ca42b2d00506a7fdceeced38fdc ./phaco.PHA8298.gnm1.ann1.0Q14.mrna_primary.fna.gz -e59fc3615c3cee38f22247df9cab7417 ./MANIFEST.PHA8298.gnm1.ann1.0Q14.descriptions.yml diff --git a/Phaseolus/coccineus/annotations/PHA8298.gnm1.ann1.0Q14/MANIFEST.PHA8298.gnm1.ann1.0Q14.yml b/Phaseolus/coccineus/annotations/PHA8298.gnm1.ann1.0Q14/MANIFEST.PHA8298.gnm1.ann1.0Q14.yml index c7007918..70eac9f8 100644 --- a/Phaseolus/coccineus/annotations/PHA8298.gnm1.ann1.0Q14/MANIFEST.PHA8298.gnm1.ann1.0Q14.yml +++ b/Phaseolus/coccineus/annotations/PHA8298.gnm1.ann1.0Q14/MANIFEST.PHA8298.gnm1.ann1.0Q14.yml @@ -34,6 +34,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - Pcoccineus_703_v1.1.gene_strip.gff3.gz - name: phaco.PHA8298.gnm1.ann1.0Q14.iprscan.gff3.gz diff --git a/Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/CHECKSUM.G27455.gnm1.ann1.JD7C.md5 b/Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/CHECKSUM.G27455.gnm1.ann1.JD7C.md5 index eea14f53..74b1a1b9 100644 --- a/Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/CHECKSUM.G27455.gnm1.ann1.JD7C.md5 +++ b/Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/CHECKSUM.G27455.gnm1.ann1.JD7C.md5 @@ -6,9 +6,9 @@ ea84e4dee31e8e24d1cf1e81d9977921 ./phalu.G27455.gnm1.ann1.JD7C.gene_models_low_ 007f1cd8d07e748a7715507274047c15 ./phalu.G27455.gnm1.ann1.JD7C.protein_primary.faa.gz.fai 39675076b1528813f6b940d4804ccee2 ./phalu.G27455.gnm1.ann1.JD7C.mrna_primary.fna.gz.gzi 773bd6046fc8908689b39d0e149d139b ./phalu.G27455.gnm1.ann1.JD7C.gene_models_main.bed.gz +8723c30f92ee4a93a0501a22d698e563 ./MANIFEST.G27455.gnm1.ann1.JD7C.yml 409d80aa6fe500507f5e88889d9e0f0f ./Plunatus_563_V1.defline.txt.gz d2696ccb562e48adafea0451095e8846 ./phalu.G27455.gnm1.ann1.JD7C.cds_primary.fna.gz -44af65776c0c62699615e1f04ec21f08 ./MANIFEST.G27455.gnm1.ann1.JD7C.descriptions.yml 694bdeddfb8c75c107046780e5a462b3 ./phalu.G27455.gnm1.ann1.JD7C.gene_models_main.bed.gz.tbi 42f42fdd96f7d150366c6e6dfe06291a ./README.G27455.gnm1.ann1.JD7C.yml 48e6a924ee622bedf98f1616e0757d78 ./phalu.G27455.gnm1.ann1.JD7C.gene_models_low_confidence.gff3.gz.tbi @@ -20,13 +20,10 @@ fd58a885a5e8380cdd50eabf82613eb3 ./BUSCO/phalu.G27455.gnm1.ann1.JD7C.busco.faba 8048149010bc2fcc726c9bb6d35fb7ee ./phalu.G27455.gnm1.ann1.JD7C.iprscan_low_confidence.gff3.gz 155e407ce5226ab4c5a6a14d4d30c734 ./usage_policy.txt 6482772af78cbe7a8382fb0f6da88cd4 ./_h5ai.footers.html -7bfb151d6b101e825f9a266aef26fb03 ./MANIFEST.G27455.gnm1.ann1.JD7C.correspondence.yml e05550ea523d7e22112ab475aaf2b0a8 ./phalu.G27455.gnm1.ann1.JD7C.protein.faa.gz.fai 065c5ea278409406c24b25e59692b473 ./phalu.G27455.gnm1.ann1.JD7C.cds_primary.fna.gz.gzi 095b1872866f8dc3c61b024723a8d3ec ./phalu.G27455.gnm1.ann1.JD7C.protein_low_confidence.faa.gz 28dfc5048fe2a4d0e98a55bdcfa52084 ./phalu.G27455.gnm1.ann1.JD7C.protein_primary.faa.gz -f82784a215a56513af421afc9d2d1302 ./busco/phalu.G27455.gnm1.ann1.JD7C.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.phalu.G27455.gnm1.ann1.JD7C.protein.faa.gz_busco.txt -46be661535dd9a6965fcd9086c8de948 ./busco/phalu.G27455.gnm1.ann1.JD7C.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.phalu.G27455.gnm1.ann1.JD7C.protein_primaryTranscript.faa.gz_busco.txt 2705f09517772912feafdf7ddf40ff67 ./phalu.G27455.gnm1.ann1.JD7C.cds_primary.fna.gz.fai c780744feecc011504a059d024f7e59b ./phalu.G27455.gnm1.ann1.JD7C.mrna.fna.gz 75e85e1247e35e57f13e9050dc709739 ./Plunatus_563_V1.annotation_info.txt.gz diff --git a/Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/MANIFEST.G27455.gnm1.ann1.JD7C.yml b/Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/MANIFEST.G27455.gnm1.ann1.JD7C.yml index dedf8f85..fa556e13 100644 --- a/Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/MANIFEST.G27455.gnm1.ann1.JD7C.yml +++ b/Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/MANIFEST.G27455.gnm1.ann1.JD7C.yml @@ -20,6 +20,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - Plunatus_563_V1.gene.gff3.gz (subset) - name: phalu.G27455.gnm1.ann1.JD7C.iprscan_low_confidence.gff3.gz diff --git a/Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/CHECKSUM.5-593.gnm1.ann1.3FBJ.md5 b/Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/CHECKSUM.5-593.gnm1.ann1.3FBJ.md5 index 2706b743..e8d94979 100644 --- a/Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/CHECKSUM.5-593.gnm1.ann1.3FBJ.md5 +++ b/Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/CHECKSUM.5-593.gnm1.ann1.3FBJ.md5 @@ -1,30 +1,32 @@ -dbdabbddf1e4f7af922b94f4216cc5a0 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/CHANGES.5-593.gnm1.1P7P.txt -2b4bb6a676279830639f281b294a862c Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/MANIFEST.5-593.gnm1.ann1.3FBJ.correspondence.yml -a7157cf57f712939e79a81a6c3ac78be Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/MANIFEST.5-593.gnm1.ann1.3FBJ.descriptions.yml -a5d3a735014037af3c66d183fffb66cb Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/original_Phytozome_DataReleasePolicy.txt -7b1224b020d18ddbf78fb301ef0c6690 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.cds_primary.fna.gz -8f2e1432091e74638410c79e2cd05439 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.cds_primary.fna.gz.fai -50b63868d0e3c1152295558f91504b5a Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.cds_primary.fna.gz.gzi -fec7e478f2fbf77ea8322b07d81bd3f9 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.cds.fna.gz -2871cbd0097a736188d493f171609cf8 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.cds.fna.gz.fai -6a3351b687663abf0745f03bdb64dc53 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.cds.fna.gz.gzi -ecc10992e521a6a195900ec0d1fdb4c9 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.gene_models_main.bed.gz -87d54c1e5867613f77356d477b0b2df2 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.gene_models_main.bed.gz.tbi -bb06118eaee647e02794a80041c7a44e Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.gene_models_main.gff3.gz -c45fa8c905104d14736b926357c3cb02 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.gene_models_main.gff3.gz.tbi -2a2edd5b898f362887b6efcbeee663a0 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.iprscan.gff3.gz -ddfccfec4fbf16dcd7b0b988b3d290ef Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.iprscan.gff3.gz.tbi -97a6a0ff6b260cd52665139c3f52571c Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.legfed_v1_0.M65K.gfa.tsv.gz -f92274a96aa89635e8d01c383c7da53d Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.mrna_primary.fna.gz -4a44b2febb56e52e92a0f14d6f9df50f Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.mrna_primary.fna.gz.fai -3aa6e24a227221e2cb181f560395a55a Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.mrna_primary.fna.gz.gzi -d2ea07ce1315752cdec3d38026235ca7 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.mrna.fna.gz -a9ca0eda9fc805e9541a9b9923db2613 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.mrna.fna.gz.fai -a20f8141013f90c6d2fbc56b34300874 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.mrna.fna.gz.gzi -da5ec2ce51270472e699541e5b0dc0b4 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.protein_primary.faa.gz -916c49489fd89f010e060535fcb28ffc Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.protein_primary.faa.gz.fai -a5667f1f057276bfbd9aa18228b98f6c Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.protein_primary.faa.gz.gzi -a7105e3536c2a7227c2315df9c2fd515 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.protein.faa.gz -35ae901757156c292c88413c52c35f82 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.protein.faa.gz.fai -375da59750d3fe100be2d948eb82c0e8 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.protein.faa.gz.gzi -5379aba8c69b56cdcf3031bc83954261 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/README.5-593.gnm1.ann1.3FBJ.yml +6a3351b687663abf0745f03bdb64dc53 ./phavu.5-593.gnm1.ann1.3FBJ.cds.fna.gz.gzi +87d54c1e5867613f77356d477b0b2df2 ./phavu.5-593.gnm1.ann1.3FBJ.gene_models_main.bed.gz.tbi +ecc10992e521a6a195900ec0d1fdb4c9 ./phavu.5-593.gnm1.ann1.3FBJ.gene_models_main.bed.gz +3aa6e24a227221e2cb181f560395a55a ./phavu.5-593.gnm1.ann1.3FBJ.mrna_primary.fna.gz.gzi +97a6a0ff6b260cd52665139c3f52571c ./phavu.5-593.gnm1.ann1.3FBJ.legfed_v1_0.M65K.gfa.tsv.gz +a7105e3536c2a7227c2315df9c2fd515 ./phavu.5-593.gnm1.ann1.3FBJ.protein.faa.gz +35ae901757156c292c88413c52c35f82 ./phavu.5-593.gnm1.ann1.3FBJ.protein.faa.gz.fai +ddfccfec4fbf16dcd7b0b988b3d290ef ./phavu.5-593.gnm1.ann1.3FBJ.iprscan.gff3.gz.tbi +c45fa8c905104d14736b926357c3cb02 ./phavu.5-593.gnm1.ann1.3FBJ.gene_models_main.gff3.gz.tbi +d2ea07ce1315752cdec3d38026235ca7 ./phavu.5-593.gnm1.ann1.3FBJ.mrna.fna.gz +916c49489fd89f010e060535fcb28ffc ./phavu.5-593.gnm1.ann1.3FBJ.protein_primary.faa.gz.fai +7b1224b020d18ddbf78fb301ef0c6690 ./phavu.5-593.gnm1.ann1.3FBJ.cds_primary.fna.gz +da5ec2ce51270472e699541e5b0dc0b4 ./phavu.5-593.gnm1.ann1.3FBJ.protein_primary.faa.gz +50b63868d0e3c1152295558f91504b5a ./phavu.5-593.gnm1.ann1.3FBJ.cds_primary.fna.gz.gzi +a5d3a735014037af3c66d183fffb66cb ./original_Phytozome_DataReleasePolicy.txt +a20f8141013f90c6d2fbc56b34300874 ./phavu.5-593.gnm1.ann1.3FBJ.mrna.fna.gz.gzi +590335c678be8dcda859180af67ca0c2 ./MANIFEST.5-593.gnm1.ann1.3FBJ.yml +a9ca0eda9fc805e9541a9b9923db2613 ./phavu.5-593.gnm1.ann1.3FBJ.mrna.fna.gz.fai +f92274a96aa89635e8d01c383c7da53d ./phavu.5-593.gnm1.ann1.3FBJ.mrna_primary.fna.gz +bb06118eaee647e02794a80041c7a44e ./phavu.5-593.gnm1.ann1.3FBJ.gene_models_main.gff3.gz +5379aba8c69b56cdcf3031bc83954261 ./README.5-593.gnm1.ann1.3FBJ.yml +8f2e1432091e74638410c79e2cd05439 ./phavu.5-593.gnm1.ann1.3FBJ.cds_primary.fna.gz.fai +a5667f1f057276bfbd9aa18228b98f6c ./phavu.5-593.gnm1.ann1.3FBJ.protein_primary.faa.gz.gzi +d4d0e232b87746229f2db7a702655006 ./BUSCO/phavu.5-593.gnm1.ann1.3FBJ.busco.fabales_odb10.short_summary.txt +6d954af7d992ebd770e73970332615c2 ./BUSCO/phavu.5-593.gnm1.ann1.3FBJ.busco.fabales_odb10.full_table.tsv.gz +96bb758c6b2e49685e2f713b9107918b ./BUSCO/phavu.5-593.gnm1.ann1.3FBJ.busco.fabales_odb10.short_summary.json +2a2edd5b898f362887b6efcbeee663a0 ./phavu.5-593.gnm1.ann1.3FBJ.iprscan.gff3.gz +375da59750d3fe100be2d948eb82c0e8 ./phavu.5-593.gnm1.ann1.3FBJ.protein.faa.gz.gzi +2871cbd0097a736188d493f171609cf8 ./phavu.5-593.gnm1.ann1.3FBJ.cds.fna.gz.fai +dbdabbddf1e4f7af922b94f4216cc5a0 ./CHANGES.5-593.gnm1.1P7P.txt +fec7e478f2fbf77ea8322b07d81bd3f9 ./phavu.5-593.gnm1.ann1.3FBJ.cds.fna.gz +4a44b2febb56e52e92a0f14d6f9df50f ./phavu.5-593.gnm1.ann1.3FBJ.mrna_primary.fna.gz.fai diff --git a/Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/MANIFEST.5-593.gnm1.ann1.3FBJ.yml b/Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/MANIFEST.5-593.gnm1.ann1.3FBJ.yml index 60ca10aa..3e5ece23 100644 --- a/Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/MANIFEST.5-593.gnm1.ann1.3FBJ.yml +++ b/Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/MANIFEST.5-593.gnm1.ann1.3FBJ.yml @@ -16,6 +16,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - Pvulgaris5_593_696_v1.1.gene.gff3.gz - name: phavu.5-593.gnm1.ann1.3FBJ.iprscan.gff3.gz diff --git a/Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/CHECKSUM.G19833.gnm1.ann1.pScz.md5 b/Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/CHECKSUM.G19833.gnm1.ann1.pScz.md5 index 36da827f..cdb8bf7e 100644 --- a/Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/CHECKSUM.G19833.gnm1.ann1.pScz.md5 +++ b/Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/CHECKSUM.G19833.gnm1.ann1.pScz.md5 @@ -1,29 +1,31 @@ -1eb2088a0d01d4499e7853043044501a Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/CHANGES.G19833.gnm1.ann1.pScz.txt -672b182214734364771934967598e47d Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/MANIFEST.G19833.gnm1.ann1.pScz.correspondence.yml -461eef48a307cc73166986f82b81f5e2 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/MANIFEST.G19833.gnm1.ann1.pScz.descriptions.yml -782c58345fb5caf6816a67c8e1314098 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.cds_primary.fna.gz -b0822d64f51b72f07e4676e80fb92ee4 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.cds_primary.fna.gz.fai -330790414daf35ac6ef08fdc46522acc Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.cds_primary.fna.gz.gzi -8903e397e1c4477a93f1a2246a4ac6bb Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.cds.fna.gz -567c900ad73b512a5320a6131867bd0f Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.cds.fna.gz.fai -7d91df28d1fc94211f404388199f554a Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.cds.fna.gz.gzi -9a6eac287b0a21d034394e350eee3ebe Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.gene_models_main.bed.gz -3a37e03283ec3350f1dd48722d28e65e Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.gene_models_main.bed.gz.tbi -3cb85c781572f1b9e153212c659cc3f6 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.gene_models_main.gff3.gz -63d851659c979b75f2783de31cfa767f Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.gene_models_main.gff3.gz.tbi -7b8c2a8af401525b4f710ecb7b5e949e Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.info_annot.txt.gz -e6054ce47d7e4ec19f2f11064e6fde03 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.legfed_v1_0.M65K.gfa.tsv.gz -33368f3b4110ee8ea54c33fed1c912c2 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.mrna_primary.fna.gz -b98880a9f269fd4ce2c7380734e02520 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.mrna_primary.fna.gz.fai -0b5e0c64fbbb45a6e27e52fd33ccedce Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.mrna_primary.fna.gz.gzi -e21a4c861df88b16456a72c85d1cc4c5 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.mrna.fna.gz -52760bd02854d4ce2c9de6c4402a4956 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.mrna.fna.gz.fai -993221dce865d8bafa2642d81a2f53ee Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.mrna.fna.gz.gzi -64974fa3e8f3d4f85e423107cb76052b Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.protein_primary.faa.gz -69b187a303cdcfa4296820c7cb9005a9 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.protein_primary.faa.gz.fai -9747c9560bb9b88e60ba84414e090e54 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.protein_primary.faa.gz.gzi -577d442160c381b274dc6b12b3cfcef9 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.protein.faa.gz -58333163193b62c205633f58e8524a7f Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.protein.faa.gz.fai -73715bf05ec91f5d4ca78572614039ce Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.protein.faa.gz.gzi -9760f888c13a8c80a4a5c1151ec87a9a Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.repeatmasking.gff3.gz -a74f905f250867cdf125616ca47c8af3 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/README.G19833.gnm1.ann1.pScz.yml +0b5e0c64fbbb45a6e27e52fd33ccedce ./phavu.G19833.gnm1.ann1.pScz.mrna_primary.fna.gz.gzi +9a6eac287b0a21d034394e350eee3ebe ./phavu.G19833.gnm1.ann1.pScz.gene_models_main.bed.gz +1eb2088a0d01d4499e7853043044501a ./CHANGES.G19833.gnm1.ann1.pScz.txt +a74f905f250867cdf125616ca47c8af3 ./README.G19833.gnm1.ann1.pScz.yml +9747c9560bb9b88e60ba84414e090e54 ./phavu.G19833.gnm1.ann1.pScz.protein_primary.faa.gz.gzi +58333163193b62c205633f58e8524a7f ./phavu.G19833.gnm1.ann1.pScz.protein.faa.gz.fai +577d442160c381b274dc6b12b3cfcef9 ./phavu.G19833.gnm1.ann1.pScz.protein.faa.gz +993221dce865d8bafa2642d81a2f53ee ./phavu.G19833.gnm1.ann1.pScz.mrna.fna.gz.gzi +b0822d64f51b72f07e4676e80fb92ee4 ./phavu.G19833.gnm1.ann1.pScz.cds_primary.fna.gz.fai +7d91df28d1fc94211f404388199f554a ./phavu.G19833.gnm1.ann1.pScz.cds.fna.gz.gzi +e6054ce47d7e4ec19f2f11064e6fde03 ./phavu.G19833.gnm1.ann1.pScz.legfed_v1_0.M65K.gfa.tsv.gz +782c58345fb5caf6816a67c8e1314098 ./phavu.G19833.gnm1.ann1.pScz.cds_primary.fna.gz +3a37e03283ec3350f1dd48722d28e65e ./phavu.G19833.gnm1.ann1.pScz.gene_models_main.bed.gz.tbi +33368f3b4110ee8ea54c33fed1c912c2 ./phavu.G19833.gnm1.ann1.pScz.mrna_primary.fna.gz +026d7b2c2ed765cf47a225894cb08151 ./MANIFEST.G19833.gnm1.ann1.pScz.yml +63d851659c979b75f2783de31cfa767f ./phavu.G19833.gnm1.ann1.pScz.gene_models_main.gff3.gz.tbi +3cb85c781572f1b9e153212c659cc3f6 ./phavu.G19833.gnm1.ann1.pScz.gene_models_main.gff3.gz +e21a4c861df88b16456a72c85d1cc4c5 ./phavu.G19833.gnm1.ann1.pScz.mrna.fna.gz +8b41bb97c8e7d1ea6f2fb62b822a9780 ./BUSCO/phavu.G19833.gnm1.ann1.pScz.busco.fabales_odb10.full_table.tsv.gz +904ce8f4fb53559249e4fa4e05c06b99 ./BUSCO/phavu.G19833.gnm1.ann1.pScz.busco.fabales_odb10.short_summary.json +0c48a4a200b285caffc5e7e831c60599 ./BUSCO/phavu.G19833.gnm1.ann1.pScz.busco.fabales_odb10.short_summary.txt +9760f888c13a8c80a4a5c1151ec87a9a ./phavu.G19833.gnm1.ann1.pScz.repeatmasking.gff3.gz +64974fa3e8f3d4f85e423107cb76052b ./phavu.G19833.gnm1.ann1.pScz.protein_primary.faa.gz +330790414daf35ac6ef08fdc46522acc ./phavu.G19833.gnm1.ann1.pScz.cds_primary.fna.gz.gzi +567c900ad73b512a5320a6131867bd0f ./phavu.G19833.gnm1.ann1.pScz.cds.fna.gz.fai +8903e397e1c4477a93f1a2246a4ac6bb ./phavu.G19833.gnm1.ann1.pScz.cds.fna.gz +52760bd02854d4ce2c9de6c4402a4956 ./phavu.G19833.gnm1.ann1.pScz.mrna.fna.gz.fai +7b8c2a8af401525b4f710ecb7b5e949e ./phavu.G19833.gnm1.ann1.pScz.info_annot.txt.gz +69b187a303cdcfa4296820c7cb9005a9 ./phavu.G19833.gnm1.ann1.pScz.protein_primary.faa.gz.fai +73715bf05ec91f5d4ca78572614039ce ./phavu.G19833.gnm1.ann1.pScz.protein.faa.gz.gzi +b98880a9f269fd4ce2c7380734e02520 ./phavu.G19833.gnm1.ann1.pScz.mrna_primary.fna.gz.fai diff --git a/Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/MANIFEST.G19833.gnm1.ann1.pScz.yml b/Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/MANIFEST.G19833.gnm1.ann1.pScz.yml index 679e5bcc..0481da62 100644 --- a/Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/MANIFEST.G19833.gnm1.ann1.pScz.yml +++ b/Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/MANIFEST.G19833.gnm1.ann1.pScz.yml @@ -14,6 +14,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - Pvulgaris_218_v1.0.gene.gff3.gz - name: phavu.G19833.gnm1.ann1.pScz.info_annot.txt.gz diff --git a/Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/CHECKSUM.G19833.gnm2.ann1.PB8d.md5 b/Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/CHECKSUM.G19833.gnm2.ann1.PB8d.md5 index a5498de1..d44ae756 100644 --- a/Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/CHECKSUM.G19833.gnm2.ann1.PB8d.md5 +++ b/Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/CHECKSUM.G19833.gnm2.ann1.PB8d.md5 @@ -1,29 +1,33 @@ -0257e774836ab2c727f3e52aadeae897 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/CHANGES.G19833.gnm2.ann1.PB8d.txt -8b1106f57119445e44084d6de66a6a3b Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.cds_primary.fna.gz -e3ebff3a22ee769dba8b8ddad72d5318 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.cds_primary.fna.gz.fai -f2296231c8a6d3336d4a3e6acebc197d Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.cds_primary.fna.gz.gzi -2757c2341d49764888e8c7f4a2075d92 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.cds.fna.gz -62ddbb5691dee4843b632b5a702c9b47 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.cds.fna.gz.fai -e1c01ab9399d71e598b572d5cdd7a8e3 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.cds.fna.gz.gzi -2c33e64f150c5fdead67a6e5d21147c7 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.gene_models_main.bed.gz -1b79e6e7641d6359ed3086c1b995a18c Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.gene_models_main.bed.gz.tbi -f72f9f4d9876c2e4c3acddd95d9f7e83 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.gene_models_main.gff3.gz -dc437b6ca0cf8c4d998d21f95b18e297 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.gene_models_main.gff3.gz.tbi -9cec940150d086928d3473848600980d Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.info_annot.txt.gz -c025abe14cbea1fd412a66076e7aeee5 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.legfed_v1_0.M65K.gfa.tsv.gz -61feb1a767776e066d2ad9aef8bae063 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.locus_mrna_name_map.txt.gz -a9be824ab54bd6fd5551ddc5e96f4dcc Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.mrna_primary.fna.gz -3d0a9cd6ee5572c17221086a9cc79fa8 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.mrna_primary.fna.gz.fai -abfdac07c742a15baa40f8a30a6c8a36 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.mrna_primary.fna.gz.gzi -90bd23efd9b1474686e6e6c4fa072ba3 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.mrna.fna.gz -b03e83f9264eb5629f5e6db962baa63d Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.mrna.fna.gz.fai -b00fbdbe691675dff782d862c93686e0 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.mrna.fna.gz.gzi -da23aafaeb1800194f72b20935f3055a Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.protein_primary.faa.gz -4ae96ef9de086bd77ba3b4288d77cbc1 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.protein_primary.faa.gz.fai -30d4cc9846b8717f24d3d8e6466d6769 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.protein_primary.faa.gz.gzi -6cdff267a41da030b1d4f4c9a3ca9bff Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.protein.faa.gz -770f2477477b3f0a466a8f540ff549bd Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.protein.faa.gz.fai -f17d5463727ec4ea3cfd5e2713bbf4a4 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.protein.faa.gz.gzi -974ae2a2c3fdf82c54bcb709ed5dce70 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.repeatmasking.gff3.gz -dfa3627f0f931e5a06142512bc34bda6 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.synonym.txt.gz -ecc268cfbf7ce0121f3ca3d55c0877eb Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/README.G19833.gnm2.ann1.PB8d.yml +2757c2341d49764888e8c7f4a2075d92 ./phavu.G19833.gnm2.ann1.PB8d.cds.fna.gz +974ae2a2c3fdf82c54bcb709ed5dce70 ./phavu.G19833.gnm2.ann1.PB8d.repeatmasking.gff3.gz +b00fbdbe691675dff782d862c93686e0 ./phavu.G19833.gnm2.ann1.PB8d.mrna.fna.gz.gzi +ecc268cfbf7ce0121f3ca3d55c0877eb ./README.G19833.gnm2.ann1.PB8d.yml +62ddbb5691dee4843b632b5a702c9b47 ./phavu.G19833.gnm2.ann1.PB8d.cds.fna.gz.fai +8ada90e8de0f6e6abfd5d16493fccb9d ./BUSCO/phavu.G19833.gnm2.ann1.PB8d.busco.fabales_odb10.short_summary.json +3765d4ffea810bf100e9c6894e683e32 ./BUSCO/phavu.G19833.gnm2.ann1.PB8d.busco.fabales_odb10.short_summary.txt +e82d8ac94d56ce628154abdd8eed3c1a ./BUSCO/phavu.G19833.gnm2.ann1.PB8d.busco.fabales_odb10.full_table.tsv.gz +f72f9f4d9876c2e4c3acddd95d9f7e83 ./phavu.G19833.gnm2.ann1.PB8d.gene_models_main.gff3.gz +1b79e6e7641d6359ed3086c1b995a18c ./phavu.G19833.gnm2.ann1.PB8d.gene_models_main.bed.gz.tbi +c025abe14cbea1fd412a66076e7aeee5 ./phavu.G19833.gnm2.ann1.PB8d.legfed_v1_0.M65K.gfa.tsv.gz +30d4cc9846b8717f24d3d8e6466d6769 ./phavu.G19833.gnm2.ann1.PB8d.protein_primary.faa.gz.gzi +3d0a9cd6ee5572c17221086a9cc79fa8 ./phavu.G19833.gnm2.ann1.PB8d.mrna_primary.fna.gz.fai +90bd23efd9b1474686e6e6c4fa072ba3 ./phavu.G19833.gnm2.ann1.PB8d.mrna.fna.gz +f17d5463727ec4ea3cfd5e2713bbf4a4 ./phavu.G19833.gnm2.ann1.PB8d.protein.faa.gz.gzi +e3ebff3a22ee769dba8b8ddad72d5318 ./phavu.G19833.gnm2.ann1.PB8d.cds_primary.fna.gz.fai +dc437b6ca0cf8c4d998d21f95b18e297 ./phavu.G19833.gnm2.ann1.PB8d.gene_models_main.gff3.gz.tbi +da23aafaeb1800194f72b20935f3055a ./phavu.G19833.gnm2.ann1.PB8d.protein_primary.faa.gz +770f2477477b3f0a466a8f540ff549bd ./phavu.G19833.gnm2.ann1.PB8d.protein.faa.gz.fai +f2296231c8a6d3336d4a3e6acebc197d ./phavu.G19833.gnm2.ann1.PB8d.cds_primary.fna.gz.gzi +9cec940150d086928d3473848600980d ./phavu.G19833.gnm2.ann1.PB8d.info_annot.txt.gz +2e3ef1d43c801bc8a9d45d0a33ba9195 ./MANIFEST.G19833.gnm2.ann1.PB8d.yml +dfa3627f0f931e5a06142512bc34bda6 ./phavu.G19833.gnm2.ann1.PB8d.synonym.txt.gz +4ae96ef9de086bd77ba3b4288d77cbc1 ./phavu.G19833.gnm2.ann1.PB8d.protein_primary.faa.gz.fai +abfdac07c742a15baa40f8a30a6c8a36 ./phavu.G19833.gnm2.ann1.PB8d.mrna_primary.fna.gz.gzi +0257e774836ab2c727f3e52aadeae897 ./CHANGES.G19833.gnm2.ann1.PB8d.txt +2c33e64f150c5fdead67a6e5d21147c7 ./phavu.G19833.gnm2.ann1.PB8d.gene_models_main.bed.gz +8b1106f57119445e44084d6de66a6a3b ./phavu.G19833.gnm2.ann1.PB8d.cds_primary.fna.gz +61feb1a767776e066d2ad9aef8bae063 ./phavu.G19833.gnm2.ann1.PB8d.locus_mrna_name_map.txt.gz +b03e83f9264eb5629f5e6db962baa63d ./phavu.G19833.gnm2.ann1.PB8d.mrna.fna.gz.fai +e1c01ab9399d71e598b572d5cdd7a8e3 ./phavu.G19833.gnm2.ann1.PB8d.cds.fna.gz.gzi +a9be824ab54bd6fd5551ddc5e96f4dcc ./phavu.G19833.gnm2.ann1.PB8d.mrna_primary.fna.gz +6cdff267a41da030b1d4f4c9a3ca9bff ./phavu.G19833.gnm2.ann1.PB8d.protein.faa.gz diff --git a/Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/MANIFEST.G19833.gnm2.ann1.PB8d.yml b/Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/MANIFEST.G19833.gnm2.ann1.PB8d.yml index 618ed2f6..7d69ee55 100644 --- a/Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/MANIFEST.G19833.gnm2.ann1.PB8d.yml +++ b/Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/MANIFEST.G19833.gnm2.ann1.PB8d.yml @@ -12,6 +12,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: phavu.G19833.gnm2.ann1.PB8d.info_annot.txt.gz description: Annotation information - name: phavu.G19833.gnm2.ann1.PB8d.legfed_v1_0.M65K.gfa.tsv.gz diff --git a/Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/CHECKSUM.LaborOvalle.gnm1.ann1.L1DY.md5 b/Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/CHECKSUM.LaborOvalle.gnm1.ann1.L1DY.md5 index 00eabf79..bc8a467c 100644 --- a/Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/CHECKSUM.LaborOvalle.gnm1.ann1.L1DY.md5 +++ b/Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/CHECKSUM.LaborOvalle.gnm1.ann1.L1DY.md5 @@ -1,29 +1,31 @@ -7c449361b5b9f6f4f4db34b4ccb249d8 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/CHANGES.LaborOvalle.gnm1.ann1.L1DY.txt -142a6153fb7d9b2f9a3c9de805680f9c Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/MANIFEST.LaborOvalle.gnm1.ann1.L1DY.correspondence.yml -3aafea0b6ada0b122616633e0f71a758 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/MANIFEST.LaborOvalle.gnm1.ann1.L1DY.descriptions.yml -b0740e287c4f6644ff305aa6c87a9afb Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/original_Phytozome_DataReleasePolicy.txt -6aaba6b1e8729345290f42dcef25f996 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.cds_primary.fna.gz -f9529251cf4ae0fc8d7c48571a05dc6a Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.cds_primary.fna.gz.fai -c7011e9e64911f411293c04492517e82 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.cds_primary.fna.gz.gzi -3c01676bed15ec443c5e6ad20b30a5bb Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.cds.fna.gz -1c4bce72a9cd018fb335368cb130fec5 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.cds.fna.gz.fai -e32a89fcf2826e795bdeba34a15b35a2 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.cds.fna.gz.gzi -86d3e3916c05676399a1a9e1cd0927d3 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.bed.gz -787f0b06bef5b84a8576503706ea776a Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.bed.gz.tbi -026440e158b89cf6be677a6f08d9e72e Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.gcv_genes.gff3.gz -de57a49acd28b7f3adecdd497890bb4f Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.gff3.gz -faa41c9ed288123d28087159a45d69e0 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.gff3.gz.tbi -60a11e6612b87175d171a4f1b6d494f8 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.legfed_v1_0.M65K.gfa.tsv.gz -8bba39126ab0b4f1ef15fa7a55676014 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.mrna_primary.fna.gz -8763b477fbc00a864f20b75dcb13bd5f Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.mrna_primary.fna.gz.fai -d685230cb76620557a1071ee7b2c8dad Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.mrna_primary.fna.gz.gzi -4f9aa6a7366e9691e69ff9461050f217 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.mrna.fna.gz -e076389bd2f8b147e66125f32cebb3d2 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.mrna.fna.gz.fai -3404929b93e4a8e9bdd22b4079ef7d0c Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.mrna.fna.gz.gzi -cc95c9b545fe6ca63da73f5beb72e0a0 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.protein_primary.faa.gz -d53d154da62385594d9e206cc0c6bf98 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.protein_primary.faa.gz.fai -751caec4f6e9c390bac801ffb29c3d2c Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.protein_primary.faa.gz.gzi -86ab6439f07ab05b2e8d4152b1020dff Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.protein.faa.gz -c92fe5411c977f8d3ce1a7a9b82ecaf3 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.protein.faa.gz.fai -dd82c03bcc083faff88b9e9cfed6ce36 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.protein.faa.gz.gzi -6c594eedd9eb270da63216dc71702ba0 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/README.LaborOvalle.gnm1.ann1.L1DY.yml +f9529251cf4ae0fc8d7c48571a05dc6a ./phavu.LaborOvalle.gnm1.ann1.L1DY.cds_primary.fna.gz.fai +d53d154da62385594d9e206cc0c6bf98 ./phavu.LaborOvalle.gnm1.ann1.L1DY.protein_primary.faa.gz.fai +faa41c9ed288123d28087159a45d69e0 ./phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.gff3.gz.tbi +e076389bd2f8b147e66125f32cebb3d2 ./phavu.LaborOvalle.gnm1.ann1.L1DY.mrna.fna.gz.fai +7c449361b5b9f6f4f4db34b4ccb249d8 ./CHANGES.LaborOvalle.gnm1.ann1.L1DY.txt +6c594eedd9eb270da63216dc71702ba0 ./README.LaborOvalle.gnm1.ann1.L1DY.yml +8bba39126ab0b4f1ef15fa7a55676014 ./phavu.LaborOvalle.gnm1.ann1.L1DY.mrna_primary.fna.gz +3c01676bed15ec443c5e6ad20b30a5bb ./phavu.LaborOvalle.gnm1.ann1.L1DY.cds.fna.gz +8763b477fbc00a864f20b75dcb13bd5f ./phavu.LaborOvalle.gnm1.ann1.L1DY.mrna_primary.fna.gz.fai +e32a89fcf2826e795bdeba34a15b35a2 ./phavu.LaborOvalle.gnm1.ann1.L1DY.cds.fna.gz.gzi +86ab6439f07ab05b2e8d4152b1020dff ./phavu.LaborOvalle.gnm1.ann1.L1DY.protein.faa.gz +dd82c03bcc083faff88b9e9cfed6ce36 ./phavu.LaborOvalle.gnm1.ann1.L1DY.protein.faa.gz.gzi +7ec26693875e1ace47d2688a42134a06 ./MANIFEST.LaborOvalle.gnm1.ann1.L1DY.yml +b0740e287c4f6644ff305aa6c87a9afb ./original_Phytozome_DataReleasePolicy.txt +c92fe5411c977f8d3ce1a7a9b82ecaf3 ./phavu.LaborOvalle.gnm1.ann1.L1DY.protein.faa.gz.fai +de57a49acd28b7f3adecdd497890bb4f ./phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.gff3.gz +4f9aa6a7366e9691e69ff9461050f217 ./phavu.LaborOvalle.gnm1.ann1.L1DY.mrna.fna.gz +d685230cb76620557a1071ee7b2c8dad ./phavu.LaborOvalle.gnm1.ann1.L1DY.mrna_primary.fna.gz.gzi +1c4bce72a9cd018fb335368cb130fec5 ./phavu.LaborOvalle.gnm1.ann1.L1DY.cds.fna.gz.fai +86d3e3916c05676399a1a9e1cd0927d3 ./phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.bed.gz +3404929b93e4a8e9bdd22b4079ef7d0c ./phavu.LaborOvalle.gnm1.ann1.L1DY.mrna.fna.gz.gzi +60a11e6612b87175d171a4f1b6d494f8 ./phavu.LaborOvalle.gnm1.ann1.L1DY.legfed_v1_0.M65K.gfa.tsv.gz +787f0b06bef5b84a8576503706ea776a ./phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.bed.gz.tbi +751caec4f6e9c390bac801ffb29c3d2c ./phavu.LaborOvalle.gnm1.ann1.L1DY.protein_primary.faa.gz.gzi +dccb8884ed2662ee9c5cd1a22b1c43ef ./BUSCO/phavu.LaborOvalle.gnm1.ann1.L1DY.busco.fabales_odb10.short_summary.json +d45c4a474fe660c07d8ae5df06443c62 ./BUSCO/phavu.LaborOvalle.gnm1.ann1.L1DY.busco.fabales_odb10.full_table.tsv.gz +670690d445a29a50143c3a61ffcada8f ./BUSCO/phavu.LaborOvalle.gnm1.ann1.L1DY.busco.fabales_odb10.short_summary.txt +6aaba6b1e8729345290f42dcef25f996 ./phavu.LaborOvalle.gnm1.ann1.L1DY.cds_primary.fna.gz +026440e158b89cf6be677a6f08d9e72e ./phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.gcv_genes.gff3.gz +cc95c9b545fe6ca63da73f5beb72e0a0 ./phavu.LaborOvalle.gnm1.ann1.L1DY.protein_primary.faa.gz +c7011e9e64911f411293c04492517e82 ./phavu.LaborOvalle.gnm1.ann1.L1DY.cds_primary.fna.gz.gzi diff --git a/Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/MANIFEST.LaborOvalle.gnm1.ann1.L1DY.yml b/Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/MANIFEST.LaborOvalle.gnm1.ann1.L1DY.yml index 48bf58e7..420ea790 100644 --- a/Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/MANIFEST.LaborOvalle.gnm1.ann1.L1DY.yml +++ b/Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/MANIFEST.LaborOvalle.gnm1.ann1.L1DY.yml @@ -18,6 +18,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - PvulgarisLaborOvalle_670_v1.1.gene.gff3.gz - name: phavu.LaborOvalle.gnm1.ann1.L1DY.legfed_v1_0.M65K.gfa.tsv.gz diff --git a/Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/CHECKSUM.UI111.gnm1.ann1.8L4N.md5 b/Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/CHECKSUM.UI111.gnm1.ann1.8L4N.md5 index 21077444..db42774e 100644 --- a/Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/CHECKSUM.UI111.gnm1.ann1.8L4N.md5 +++ b/Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/CHECKSUM.UI111.gnm1.ann1.8L4N.md5 @@ -1,31 +1,32 @@ -8d9998b3485699413fe48252bdafe0bc Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/CHANGES.UI111.gnm1.ann1.8L4N.txt -318656c9135d61d0d5b3895c9420c418 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/MANIFEST.UI111.gnm1.ann1.8L4N.correspondence.yml -0ac0828ac3d20ab2851cc97c6bead790 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/MANIFEST.UI111.gnm1.ann1.8L4N.descriptions.yml -1ae151abd2fd579e2c3ed5313dfe12d5 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.cds_primary.fna.gz -2bc015bc2e463122ea42927dc5c2c7ab Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.cds_primary.fna.gz.fai -1dc3611193e85be580edb436567c2e79 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.cds_primary.fna.gz.gzi -677e83bdf034857f376413352540fa05 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.cds.fna.gz -f8791ca27d9ce9d3a5a6da625edab518 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.cds.fna.gz.fai -9e0aec101d3e60bcb27c99ba811e5b18 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.cds.fna.gz.gzi -9a52c354954991b923e4f1b464ec9e3b Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.gene_models_main.bed.gz -376b28e8926e83704965a437da5b4e53 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.gene_models_main.bed.gz.tbi -6e7f9595ec02f4e4237d2dfa760c6193 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.gene_models_main.gcv_chado.gff3.gz -e4b8949e03f22bc5cd8d2d9b79c53cbe Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.gene_models_main.gff3.gz -382a75ec6786a31ff4b5cb7e577783cd Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.gene_models_main.gff3.gz.tbi -94e1cc5507ab1abc7d4da9b3c5080026 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.info_annot.txt.gz -1cd9603f9dda6c2070654fdd41462aac Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.info_defline.txt.gz -c135b479d4730bec02fddd426b700f4a Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.legfed_v1_0.M65K.gfa.tsv.gz -178202f13d7baee66c4ad5238c79e74d Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.mrna_primary.fna.gz -6866f88ff81b948d060ebadde1debbbc Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.mrna_primary.fna.gz.fai -7358c0fbe2591aa5f83b5f70b8bb17ae Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.mrna_primary.fna.gz.gzi -65b4f3dde42c6ba08c9ce43a9299ad9b Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.mrna.fna.gz -57e57dafa317b54c2f6088cefe78b738 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.mrna.fna.gz.fai -8d3730169b13e22f88e896e8ccdeb451 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.mrna.fna.gz.gzi -40342155bf09c562b502d67fcb4bf81b Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.protein_primary.faa.gz -1b97f74f6979f67b1c47412d2af2c859 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.protein_primary.faa.gz.fai -0eae142a5e73dfa43cd6750eaa5d779c Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.protein_primary.faa.gz.gzi -3e35c8a30027dade6992f0c093c9a419 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.protein.faa.gz -7eaa489ae48f66bd71b1225f495fe6f1 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.protein.faa.gz.fai -fc503c6c29c999c911f02e72dbb55ce8 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.protein.faa.gz.gzi -775527cf27bca4790166b107b6902a29 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.repeatmasked_assembly_v1.0.gff3.gz -d8ad8ceafcd5599687480384302cd95e Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/README.UI111.gnm1.ann1.8L4N.yml +80657d08f627c3aa13f262aeb14b9327 ./BUSCO/phavu.UI111.gnm1.ann1.8L4N.busco.fabales_odb10.short_summary.json +be8d12c9216fd6ffc98a70cf1086fa24 ./BUSCO/phavu.UI111.gnm1.ann1.8L4N.busco.fabales_odb10.full_table.tsv.gz +18fa33924c78ad017546702437713f61 ./BUSCO/phavu.UI111.gnm1.ann1.8L4N.busco.fabales_odb10.short_summary.txt +f8791ca27d9ce9d3a5a6da625edab518 ./phavu.UI111.gnm1.ann1.8L4N.cds.fna.gz.fai +7eaa489ae48f66bd71b1225f495fe6f1 ./phavu.UI111.gnm1.ann1.8L4N.protein.faa.gz.fai +376b28e8926e83704965a437da5b4e53 ./phavu.UI111.gnm1.ann1.8L4N.gene_models_main.bed.gz.tbi +40342155bf09c562b502d67fcb4bf81b ./phavu.UI111.gnm1.ann1.8L4N.protein_primary.faa.gz +c135b479d4730bec02fddd426b700f4a ./phavu.UI111.gnm1.ann1.8L4N.legfed_v1_0.M65K.gfa.tsv.gz +1dc3611193e85be580edb436567c2e79 ./phavu.UI111.gnm1.ann1.8L4N.cds_primary.fna.gz.gzi +e4b8949e03f22bc5cd8d2d9b79c53cbe ./phavu.UI111.gnm1.ann1.8L4N.gene_models_main.gff3.gz +d8ad8ceafcd5599687480384302cd95e ./README.UI111.gnm1.ann1.8L4N.yml +57e57dafa317b54c2f6088cefe78b738 ./phavu.UI111.gnm1.ann1.8L4N.mrna.fna.gz.fai +1ae151abd2fd579e2c3ed5313dfe12d5 ./phavu.UI111.gnm1.ann1.8L4N.cds_primary.fna.gz +9a52c354954991b923e4f1b464ec9e3b ./phavu.UI111.gnm1.ann1.8L4N.gene_models_main.bed.gz +7358c0fbe2591aa5f83b5f70b8bb17ae ./phavu.UI111.gnm1.ann1.8L4N.mrna_primary.fna.gz.gzi +677e83bdf034857f376413352540fa05 ./phavu.UI111.gnm1.ann1.8L4N.cds.fna.gz +382a75ec6786a31ff4b5cb7e577783cd ./phavu.UI111.gnm1.ann1.8L4N.gene_models_main.gff3.gz.tbi +8d9998b3485699413fe48252bdafe0bc ./CHANGES.UI111.gnm1.ann1.8L4N.txt +0eae142a5e73dfa43cd6750eaa5d779c ./phavu.UI111.gnm1.ann1.8L4N.protein_primary.faa.gz.gzi +1b97f74f6979f67b1c47412d2af2c859 ./phavu.UI111.gnm1.ann1.8L4N.protein_primary.faa.gz.fai +1cd9603f9dda6c2070654fdd41462aac ./phavu.UI111.gnm1.ann1.8L4N.info_defline.txt.gz +8d3730169b13e22f88e896e8ccdeb451 ./phavu.UI111.gnm1.ann1.8L4N.mrna.fna.gz.gzi +4a34ebacc3d01f58385494ad1366d0e5 ./MANIFEST.UI111.gnm1.ann1.8L4N.yml +65b4f3dde42c6ba08c9ce43a9299ad9b ./phavu.UI111.gnm1.ann1.8L4N.mrna.fna.gz +775527cf27bca4790166b107b6902a29 ./phavu.UI111.gnm1.ann1.8L4N.repeatmasked_assembly_v1.0.gff3.gz +6866f88ff81b948d060ebadde1debbbc ./phavu.UI111.gnm1.ann1.8L4N.mrna_primary.fna.gz.fai +94e1cc5507ab1abc7d4da9b3c5080026 ./phavu.UI111.gnm1.ann1.8L4N.info_annot.txt.gz +2bc015bc2e463122ea42927dc5c2c7ab ./phavu.UI111.gnm1.ann1.8L4N.cds_primary.fna.gz.fai +178202f13d7baee66c4ad5238c79e74d ./phavu.UI111.gnm1.ann1.8L4N.mrna_primary.fna.gz +fc503c6c29c999c911f02e72dbb55ce8 ./phavu.UI111.gnm1.ann1.8L4N.protein.faa.gz.gzi +3e35c8a30027dade6992f0c093c9a419 ./phavu.UI111.gnm1.ann1.8L4N.protein.faa.gz +9e0aec101d3e60bcb27c99ba811e5b18 ./phavu.UI111.gnm1.ann1.8L4N.cds.fna.gz.gzi diff --git a/Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/MANIFEST.UI111.gnm1.ann1.8L4N.yml b/Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/MANIFEST.UI111.gnm1.ann1.8L4N.yml index 378e48ba..16cbe7bf 100644 --- a/Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/MANIFEST.UI111.gnm1.ann1.8L4N.yml +++ b/Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/MANIFEST.UI111.gnm1.ann1.8L4N.yml @@ -12,6 +12,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - PvulgarisUI111_534_v1.1.gene.gff3.gz - name: phavu.UI111.gnm1.ann1.8L4N.info_annot.txt.gz diff --git a/Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/CHECKSUM.MilvusB.gnm2.ann1.DFgp.md5 b/Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/CHECKSUM.MilvusB.gnm2.ann1.DFgp.md5 index 88f14711..e226a445 100644 --- a/Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/CHECKSUM.MilvusB.gnm2.ann1.DFgp.md5 +++ b/Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/CHECKSUM.MilvusB.gnm2.ann1.DFgp.md5 @@ -20,7 +20,7 @@ e3580814e6bd4939516e8a1e0acd0445 ./tripr.MilvusB.gnm2.ann1.DFgp.gene_models_mai 8a2ab5dd1a0c06a1792f4e0ffcb852c2 ./tripr.MilvusB.gnm2.ann1.DFgp.protein_primary.faa.gz dac00c7d28bf4fcacd45865f020455c0 ./tripr.MilvusB.gnm2.ann1.DFgp.protein_primary.faa.gz.fai 0ca63c72ce2625de7ee8259c2703d9e7 ./tripr.MilvusB.gnm2.ann1.DFgp.cds_primary.fna.gz.gzi -827558e384eeb821a5eec7185222d71e ./MANIFEST.MilvusB.gnm2.ann1.DFgp.yml +1535b7a6e6c3cc9fda0336a488d9f84f ./MANIFEST.MilvusB.gnm2.ann1.DFgp.yml a4cd79c73b79f13dcf8539b37925c6bd ./tripr.MilvusB.gnm2.ann1.DFgp.mrna.fna.gz ca89371cc4b01822d545163250207c42 ./tripr.MilvusB.gnm2.ann1.DFgp.protein.faa.gz.fai fd7b99a34c9850cef6cf304b643aba7a ./tripr.MilvusB.gnm2.ann1.DFgp.mrna.fna.gz.gzi diff --git a/Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/MANIFEST.MilvusB.gnm2.ann1.DFgp.yml b/Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/MANIFEST.MilvusB.gnm2.ann1.DFgp.yml index fc5a9250..8c8cd2d6 100644 --- a/Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/MANIFEST.MilvusB.gnm2.ann1.DFgp.yml +++ b/Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/MANIFEST.MilvusB.gnm2.ann1.DFgp.yml @@ -14,6 +14,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: tripr.MilvusB.gnm2.ann1.DFgp.info_annot_AHRD.txt.gz description: annotation from the AHRD pipeline - name: tripr.MilvusB.gnm2.ann1.DFgp.legfed_v1_0.M65K.gfa.tsv.gz diff --git a/Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/CHECKSUM.Daliak.gnm2.ann1.MFKF.md5 b/Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/CHECKSUM.Daliak.gnm2.ann1.MFKF.md5 index a91ab2d7..f0472b58 100644 --- a/Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/CHECKSUM.Daliak.gnm2.ann1.MFKF.md5 +++ b/Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/CHECKSUM.Daliak.gnm2.ann1.MFKF.md5 @@ -1,29 +1,31 @@ -1cf9b6a8ef74d3a074d882aea2e32475 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/CHANGES.Daliak.gnm2.ann1.MFKF.txt -784619d4ae68f099d3748ff368975252 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/MANIFEST.Daliak.gnm2.ann1.MFKF.correspondence.yml -2091c0b1d72f3ed1d36f7a2d18644c83 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/MANIFEST.Daliak.gnm2.ann1.MFKF.descriptions.yml -865dc38356d505996c042896d2ebd20e Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/README.Daliak.gnm2.ann1.MFKF.yml -daaf2991fb50219b27b39007a6efeeb5 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.cds_primary.fna.gz -e3c6b7d2a4bd3e92683a4136c1576775 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.cds_primary.fna.gz.fai -744ad81f0019d5b8b348cb0f5af46329 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.cds_primary.fna.gz.gzi -fb235334bf9fb8a3d54e24f298562493 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.cds.fna.gz -5fef7ac3e385805b65b3f243cbbf01c6 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.cds.fna.gz.fai -94f7a4e371d09d0c9db1d21fb1934e79 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.cds.fna.gz.gzi -338b2c572c5b82974e7fed1d9d501ac3 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.gene_models_main.bed.gz -ca3d1ca90f10ce3c3559fb125e102c99 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.gene_models_main.bed.gz.tbi -abdeb890c3a22e4fefa32696b1f53f9a Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.gene_models_main.gff3.gz -5fcf4363d66f81cda868ba7bf9009544 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.gene_models_main.gff3.gz.tbi -690d5aedd747e9e204d9b2744186fccb Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.iprscan.gff3.gz -6a75a6d4189a0fbe108d5a5fac227196 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.iprscan.gff3.gz.tbi -1b213669faf04a93aec8a1ba2db7145d Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.legfed_v1_0.M65K.gfa.tsv.gz -e5bf7da73f96f0b940617f219ab023da Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.mrna_primary.fna.gz -2198d72eab8d6f74fc4eed408c3603d6 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.mrna_primary.fna.gz.fai -8247eff4e140de96ea999c95d6fb7cb6 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.mrna_primary.fna.gz.gzi -7f88497a9ee15d3e737abdd84b565d01 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.mrna.fna.gz -378f22d7d90ae4488bb6ac2c081e374e Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.mrna.fna.gz.fai -df5cf6447e43c97282112021b195c0cd Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.mrna.fna.gz.gzi -b26cb11294b63798708928ee955bd743 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.protein_primary.faa.gz -af4b3e2df870060ede101f5370dfd534 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.protein_primary.faa.gz.fai -fb0119e384bc6fdc6f32d7e4fa67cb2e Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.protein_primary.faa.gz.gzi -b0a2a95a96ece2eef5689dc6dec29e97 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.protein.faa.gz -fc814bed43d911edbb92141c02f36af5 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.protein.faa.gz.fai -93f3704e12b9746af304e4f1a9b673f4 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.protein.faa.gz.gzi +23a62633a6562d90eacf6f772358cd86 ./MANIFEST.Daliak.gnm2.ann1.MFKF.yml +af4b3e2df870060ede101f5370dfd534 ./trisu.Daliak.gnm2.ann1.MFKF.protein_primary.faa.gz.fai +378f22d7d90ae4488bb6ac2c081e374e ./trisu.Daliak.gnm2.ann1.MFKF.mrna.fna.gz.fai +865dc38356d505996c042896d2ebd20e ./README.Daliak.gnm2.ann1.MFKF.yml +93f3704e12b9746af304e4f1a9b673f4 ./trisu.Daliak.gnm2.ann1.MFKF.protein.faa.gz.gzi +1b213669faf04a93aec8a1ba2db7145d ./trisu.Daliak.gnm2.ann1.MFKF.legfed_v1_0.M65K.gfa.tsv.gz +ca3d1ca90f10ce3c3559fb125e102c99 ./trisu.Daliak.gnm2.ann1.MFKF.gene_models_main.bed.gz.tbi +7f88497a9ee15d3e737abdd84b565d01 ./trisu.Daliak.gnm2.ann1.MFKF.mrna.fna.gz +e5bf7da73f96f0b940617f219ab023da ./trisu.Daliak.gnm2.ann1.MFKF.mrna_primary.fna.gz +e3c6b7d2a4bd3e92683a4136c1576775 ./trisu.Daliak.gnm2.ann1.MFKF.cds_primary.fna.gz.fai +690d5aedd747e9e204d9b2744186fccb ./trisu.Daliak.gnm2.ann1.MFKF.iprscan.gff3.gz +1cf9b6a8ef74d3a074d882aea2e32475 ./CHANGES.Daliak.gnm2.ann1.MFKF.txt +589f4cd45b2dfc20e8bc27d7b4db99b5 ./BUSCO/trisu.Daliak.gnm2.ann1.MFKF.busco.fabales_odb10.short_summary.json +ec43b28f468665b69405152853902042 ./BUSCO/trisu.Daliak.gnm2.ann1.MFKF.busco.fabales_odb10.short_summary.txt +5f0b0832b43d04cb97434a468db2cde5 ./BUSCO/trisu.Daliak.gnm2.ann1.MFKF.busco.fabales_odb10.full_table.tsv.gz +338b2c572c5b82974e7fed1d9d501ac3 ./trisu.Daliak.gnm2.ann1.MFKF.gene_models_main.bed.gz +8247eff4e140de96ea999c95d6fb7cb6 ./trisu.Daliak.gnm2.ann1.MFKF.mrna_primary.fna.gz.gzi +5fef7ac3e385805b65b3f243cbbf01c6 ./trisu.Daliak.gnm2.ann1.MFKF.cds.fna.gz.fai +2198d72eab8d6f74fc4eed408c3603d6 ./trisu.Daliak.gnm2.ann1.MFKF.mrna_primary.fna.gz.fai +94f7a4e371d09d0c9db1d21fb1934e79 ./trisu.Daliak.gnm2.ann1.MFKF.cds.fna.gz.gzi +daaf2991fb50219b27b39007a6efeeb5 ./trisu.Daliak.gnm2.ann1.MFKF.cds_primary.fna.gz +b0a2a95a96ece2eef5689dc6dec29e97 ./trisu.Daliak.gnm2.ann1.MFKF.protein.faa.gz +b26cb11294b63798708928ee955bd743 ./trisu.Daliak.gnm2.ann1.MFKF.protein_primary.faa.gz +5fcf4363d66f81cda868ba7bf9009544 ./trisu.Daliak.gnm2.ann1.MFKF.gene_models_main.gff3.gz.tbi +744ad81f0019d5b8b348cb0f5af46329 ./trisu.Daliak.gnm2.ann1.MFKF.cds_primary.fna.gz.gzi +fc814bed43d911edbb92141c02f36af5 ./trisu.Daliak.gnm2.ann1.MFKF.protein.faa.gz.fai +fb235334bf9fb8a3d54e24f298562493 ./trisu.Daliak.gnm2.ann1.MFKF.cds.fna.gz +6a75a6d4189a0fbe108d5a5fac227196 ./trisu.Daliak.gnm2.ann1.MFKF.iprscan.gff3.gz.tbi +df5cf6447e43c97282112021b195c0cd ./trisu.Daliak.gnm2.ann1.MFKF.mrna.fna.gz.gzi +abdeb890c3a22e4fefa32696b1f53f9a ./trisu.Daliak.gnm2.ann1.MFKF.gene_models_main.gff3.gz +fb0119e384bc6fdc6f32d7e4fa67cb2e ./trisu.Daliak.gnm2.ann1.MFKF.protein_primary.faa.gz.gzi diff --git a/Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/MANIFEST.Daliak.gnm2.ann1.MFKF.yml b/Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/MANIFEST.Daliak.gnm2.ann1.MFKF.yml index dc84b0ad..ba2e6636 100644 --- a/Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/MANIFEST.Daliak.gnm2.ann1.MFKF.yml +++ b/Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/MANIFEST.Daliak.gnm2.ann1.MFKF.yml @@ -16,6 +16,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - Tsu.genes.gff - name: trisu.Daliak.gnm2.ann1.MFKF.iprscan.gff3.gz diff --git a/Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X/CHECKSUM.Tiffany.gnm1.ann1.Y54X.md5 b/Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X/CHECKSUM.Tiffany.gnm1.ann1.Y54X.md5 index 17ea7b74..1a8dfa3b 100644 --- a/Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X/CHECKSUM.Tiffany.gnm1.ann1.Y54X.md5 +++ b/Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X/CHECKSUM.Tiffany.gnm1.ann1.Y54X.md5 @@ -5,7 +5,7 @@ e37239fd51ededb949bf86508a3bd69b ./CHANGES.Tiffany.gnm1.ann1.Y54X.txt ce3c2af78e4170a520cccee5c4f892ec ./vicfa.Tiffany.gnm1.ann1.Y54X.protein.faa.gz.fai 9054330b4630476772fa344547376e4e ./vicfa.Tiffany.gnm1.ann1.Y54X.mrna.fna.gz.fai 30dc330fb10e045707fc022bf1f29042 ./vicfa.Tiffany.gnm1.ann1.Y54X.protein_primary.faa.gz.gzi -9b3a22ab0185cb28ab78f92dc3b47965 ./MANIFEST.Tiffany.gnm1.ann1.Y54X.yml +dfc8069c0c4315999e29286678d9cfc4 ./MANIFEST.Tiffany.gnm1.ann1.Y54X.yml d49a80c123d0c185e4377717eea83b2f ./BUSCO/vicfa.Tiffany.gnm1.ann1.Y54X.busco.fabales_odb10.full_table.tsv.gz 7e2c6bd245c721fbae11ea0b918665ed ./BUSCO/vicfa.Tiffany.gnm1.ann1.Y54X.busco.fabales_odb10.short_summary.json b105bbbc15eff3330ec007c4b32902a8 ./BUSCO/vicfa.Tiffany.gnm1.ann1.Y54X.busco.fabales_odb10.short_summary.txt diff --git a/Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X/MANIFEST.Tiffany.gnm1.ann1.Y54X.yml b/Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X/MANIFEST.Tiffany.gnm1.ann1.Y54X.yml index 4d131eaf..4b771814 100644 --- a/Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X/MANIFEST.Tiffany.gnm1.ann1.Y54X.yml +++ b/Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X/MANIFEST.Tiffany.gnm1.ann1.Y54X.yml @@ -20,6 +20,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - Vfaba.Tiffany.v1.agat.gff3.gz - name: vicfa.Tiffany.gnm1.ann1.Y54X.iprscan.gff3.gz diff --git a/Vicia/villosa/annotations/HV-30.gnm1.ann1.6WFF/CHECKSUM.HV-30.gnm1.ann1.6WFF.md5 b/Vicia/villosa/annotations/HV-30.gnm1.ann1.6WFF/CHECKSUM.HV-30.gnm1.ann1.6WFF.md5 index 6e04bbcf..b6e4e200 100644 --- a/Vicia/villosa/annotations/HV-30.gnm1.ann1.6WFF/CHECKSUM.HV-30.gnm1.ann1.6WFF.md5 +++ b/Vicia/villosa/annotations/HV-30.gnm1.ann1.6WFF/CHECKSUM.HV-30.gnm1.ann1.6WFF.md5 @@ -5,7 +5,6 @@ ca3368e27f533e8d18fd165b40f35db1 ./vicvi.HV-30.gnm1.ann1.6WFF.mrna.fna.gz.gzi 197a2e13d8668e2f3e1e7e8fdc2da2ac ./BUSCO/vicvi.HV-30.gnm1.ann1.6WFF.busco.fabales_odb10.short_summary.txt 45d380e9135c90aff0aec25f9ff39d0e ./BUSCO/vicvi.HV-30.gnm1.ann1.6WFF.busco.fabales_odb10.full_table.tsv.gz c6004a856c8f28b74fec19614eee3142 ./BUSCO/vicvi.HV-30.gnm1.ann1.6WFF.busco.fabales_odb10.short_summary.json -33320321decd47a6e41a4d5fad3cf531 ./MANIFEST.HV-30.gnm1.ann1.6WFF.correspondence.yml 0af08eabdfd873065d90ae9ed4637186 ./vicvi.HV-30.gnm1.ann1.6WFF.gene_models_main.gff3.gz.tbi 434fbc2c82093ea33ad59985a025c81a ./vicvi.HV-30.gnm1.ann1.6WFF.featid_map.tsv.gz b81c81210d5ef4c5f7a69ba697323ea7 ./vicvi.HV-30.gnm1.ann1.6WFF.mrna_primary.fna.gz.gzi @@ -17,7 +16,6 @@ d1928ac02efded7e984b3d70f5390a3d ./vicvi.HV-30.gnm1.ann1.6WFF.protein_primary.f fa2c027c570369008d691706c8354adc ./vicvi.HV-30.gnm1.ann1.6WFF.gene_models_main.gff3.gz e14831b9150da24deaf340836c306455 ./vicvi.HV-30.gnm1.ann1.6WFF.cds_primary.fna.gz.gzi 975fec466f601947a959a5954f7d59b4 ./CHANGES.HV-30.gnm1.ann1.6WFF.txt -d7509d6856f58b4aa53062657a738e39 ./MANIFEST.HV-30.gnm1.ann1.6WFF.descriptions.yml 23270b607ebe0c2f796d645fb2021551 ./vicvi.HV-30.gnm1.ann1.6WFF.protein.faa.gz.fai 4c32abe6161bcf836a29de8b248c80fb ./vicvi.HV-30.gnm1.ann1.6WFF.iprscan.gff3.gz 2e16e71acbe8777c17ed55b9dc18b809 ./vicvi.HV-30.gnm1.ann1.6WFF.mrna_primary.fna.gz.fai @@ -28,6 +26,7 @@ f2fb534b98d7e9430d68ff97e2af6027 ./vicvi.HV-30.gnm1.ann1.6WFF.iprscan.gff3.gz.t 0626df28a5e82b3b39a53a5f3b9d9db0 ./vicvi.HV-30.gnm1.ann1.6WFF.cds.fna.gz.gzi 069cddc206cfd8a653a0214395c3cf5f ./README.HV-30.gnm1.ann1.6WFF.yml 86ea5f47578c1c534a3b30d07009a52b ./vicvi.HV-30.gnm1.ann1.6WFF.protein_primary.faa.gz.fai +96a5b817927e383cf39c31fe10c91c5b ./MANIFEST.HV-30.gnm1.ann1.6WFF.yml 1d414154297bf348697671ceddff5985 ./vicvi.HV-30.gnm1.ann1.6WFF.mrna.fna.gz.fai 21541966e591ec2aa420fbe9d148b0b5 ./vicvi.HV-30.gnm1.ann1.6WFF.protein.faa.gz 179bb76c33b944a5f280cf55064753cb ./vicvi.HV-30.gnm1.ann1.6WFF.cds_primary.fna.gz diff --git a/Vicia/villosa/annotations/HV-30.gnm1.ann1.6WFF/MANIFEST.HV-30.gnm1.ann1.6WFF.yml b/Vicia/villosa/annotations/HV-30.gnm1.ann1.6WFF/MANIFEST.HV-30.gnm1.ann1.6WFF.yml index edf1d2e4..5371823f 100644 --- a/Vicia/villosa/annotations/HV-30.gnm1.ann1.6WFF/MANIFEST.HV-30.gnm1.ann1.6WFF.yml +++ b/Vicia/villosa/annotations/HV-30.gnm1.ann1.6WFF/MANIFEST.HV-30.gnm1.ann1.6WFF.yml @@ -20,6 +20,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - GCF_029867415.1.modID.genes_exons.gff3.gz - name: vicvi.HV-30.gnm1.ann1.6WFF.iprscan.gff3.gz diff --git a/Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/CHECKSUM.Shumari.gnm1.ann1.8BRS.md5 b/Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/CHECKSUM.Shumari.gnm1.ann1.8BRS.md5 index 1cdccccf..5003918c 100644 --- a/Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/CHECKSUM.Shumari.gnm1.ann1.8BRS.md5 +++ b/Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/CHECKSUM.Shumari.gnm1.ann1.8BRS.md5 @@ -1,29 +1,31 @@ -171c7e94827a32ace7b6a3d70c996cb7 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/CHANGES.Shumari.gnm1.ann1.8BRS.txt -762833b630971d5e8404b3044e551760 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/MANIFEST.Shumari.gnm1.ann1.8BRS.correspondence.yml -8685ea9aecf039ded05f653bb7e5a3c9 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/MANIFEST.Shumari.gnm1.ann1.8BRS.descriptions.yml -7a39a799dec2b2e32811c1be841ebc7a Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/README.Shumari.gnm1.ann1.8BRS.yml -fee76b3e08e8cf923f46efd9f1d6cb38 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.cds_primary.fna.gz -d49847b4edb25ab954306bd40f73cac1 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.cds_primary.fna.gz.fai -675565e93b373e25bf3f1b719c1623b6 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.cds_primary.fna.gz.gzi -fee76b3e08e8cf923f46efd9f1d6cb38 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.cds.fna.gz -d49847b4edb25ab954306bd40f73cac1 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.cds.fna.gz.fai -675565e93b373e25bf3f1b719c1623b6 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.cds.fna.gz.gzi -5d30fd596738f21480da5e461addaa47 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.gene_models_main.bed.gz -b40213d5891b42cd25f150734ecef8d8 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.gene_models_main.bed.gz.tbi -67c44a52ac1b3b1699897d93c68d1405 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.gene_models_main.gff3.gz -1d4fbe7b5715171f05bbd099d84b5ac1 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.gene_models_main.gff3.gz.tbi -78f225fc42e8c77e143d5e1c9cf7537e Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.iprscan.gff3.gz -42ddf02d4453fcda48008c0484e79536 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.iprscan.gff3.gz.tbi -ab539dfc5c95945aef2fcc152c820f11 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.legfed_v1_0.M65K.gfa.tsv.gz -2a8644f9128634b76680d0f1c4c41bff Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.mrna_primary.fna.gz -4dfcb7c49926abb07a2dad24030dfac5 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.mrna_primary.fna.gz.fai -acaecf59df6094b7d7ad3950b711ff06 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.mrna_primary.fna.gz.gzi -2a8644f9128634b76680d0f1c4c41bff Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.mrna.fna.gz -4dfcb7c49926abb07a2dad24030dfac5 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.mrna.fna.gz.fai -acaecf59df6094b7d7ad3950b711ff06 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.mrna.fna.gz.gzi -bccb28ece3e4d66cfebe76d61c2b1a10 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.protein_primary.faa.gz -9eebd047f49131ac5b2f37712f8a35e5 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.protein_primary.faa.gz.fai -74a51a6680c371da230e026a123e1141 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.protein_primary.faa.gz.gzi -bccb28ece3e4d66cfebe76d61c2b1a10 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.protein.faa.gz -9eebd047f49131ac5b2f37712f8a35e5 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.protein.faa.gz.fai -74a51a6680c371da230e026a123e1141 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.protein.faa.gz.gzi +fee76b3e08e8cf923f46efd9f1d6cb38 ./vigan.Shumari.gnm1.ann1.8BRS.cds_primary.fna.gz +67c44a52ac1b3b1699897d93c68d1405 ./vigan.Shumari.gnm1.ann1.8BRS.gene_models_main.gff3.gz +d49847b4edb25ab954306bd40f73cac1 ./vigan.Shumari.gnm1.ann1.8BRS.cds.fna.gz.fai +4dfcb7c49926abb07a2dad24030dfac5 ./vigan.Shumari.gnm1.ann1.8BRS.mrna_primary.fna.gz.fai +9eebd047f49131ac5b2f37712f8a35e5 ./vigan.Shumari.gnm1.ann1.8BRS.protein_primary.faa.gz.fai +f74f489c8fd62ac2860b46943fc15eda ./MANIFEST.Shumari.gnm1.ann1.8BRS.yml +d49847b4edb25ab954306bd40f73cac1 ./vigan.Shumari.gnm1.ann1.8BRS.cds_primary.fna.gz.fai +acaecf59df6094b7d7ad3950b711ff06 ./vigan.Shumari.gnm1.ann1.8BRS.mrna.fna.gz.gzi +42ddf02d4453fcda48008c0484e79536 ./vigan.Shumari.gnm1.ann1.8BRS.iprscan.gff3.gz.tbi +9eebd047f49131ac5b2f37712f8a35e5 ./vigan.Shumari.gnm1.ann1.8BRS.protein.faa.gz.fai +171c7e94827a32ace7b6a3d70c996cb7 ./CHANGES.Shumari.gnm1.ann1.8BRS.txt +1d4fbe7b5715171f05bbd099d84b5ac1 ./vigan.Shumari.gnm1.ann1.8BRS.gene_models_main.gff3.gz.tbi +4dfcb7c49926abb07a2dad24030dfac5 ./vigan.Shumari.gnm1.ann1.8BRS.mrna.fna.gz.fai +74a51a6680c371da230e026a123e1141 ./vigan.Shumari.gnm1.ann1.8BRS.protein.faa.gz.gzi +bccb28ece3e4d66cfebe76d61c2b1a10 ./vigan.Shumari.gnm1.ann1.8BRS.protein_primary.faa.gz +675565e93b373e25bf3f1b719c1623b6 ./vigan.Shumari.gnm1.ann1.8BRS.cds_primary.fna.gz.gzi +fee76b3e08e8cf923f46efd9f1d6cb38 ./vigan.Shumari.gnm1.ann1.8BRS.cds.fna.gz +5d30fd596738f21480da5e461addaa47 ./vigan.Shumari.gnm1.ann1.8BRS.gene_models_main.bed.gz +acaecf59df6094b7d7ad3950b711ff06 ./vigan.Shumari.gnm1.ann1.8BRS.mrna_primary.fna.gz.gzi +74a51a6680c371da230e026a123e1141 ./vigan.Shumari.gnm1.ann1.8BRS.protein_primary.faa.gz.gzi +ab539dfc5c95945aef2fcc152c820f11 ./vigan.Shumari.gnm1.ann1.8BRS.legfed_v1_0.M65K.gfa.tsv.gz +78f225fc42e8c77e143d5e1c9cf7537e ./vigan.Shumari.gnm1.ann1.8BRS.iprscan.gff3.gz +b40213d5891b42cd25f150734ecef8d8 ./vigan.Shumari.gnm1.ann1.8BRS.gene_models_main.bed.gz.tbi +675565e93b373e25bf3f1b719c1623b6 ./vigan.Shumari.gnm1.ann1.8BRS.cds.fna.gz.gzi +7a39a799dec2b2e32811c1be841ebc7a ./README.Shumari.gnm1.ann1.8BRS.yml +a6997f6a3f5af263b14349d4ae53d557 ./BUSCO/vigan.Shumari.gnm1.ann1.8BRS.busco.fabales_odb10.short_summary.json +8f3dbe7a3a2bcc87c7f800dc4768f63d ./BUSCO/vigan.Shumari.gnm1.ann1.8BRS.busco.fabales_odb10.short_summary.txt +5136cca195a1e58390a65ec2d083fcbe ./BUSCO/vigan.Shumari.gnm1.ann1.8BRS.busco.fabales_odb10.full_table.tsv.gz +bccb28ece3e4d66cfebe76d61c2b1a10 ./vigan.Shumari.gnm1.ann1.8BRS.protein.faa.gz +2a8644f9128634b76680d0f1c4c41bff ./vigan.Shumari.gnm1.ann1.8BRS.mrna.fna.gz +2a8644f9128634b76680d0f1c4c41bff ./vigan.Shumari.gnm1.ann1.8BRS.mrna_primary.fna.gz diff --git a/Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/MANIFEST.Shumari.gnm1.ann1.8BRS.yml b/Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/MANIFEST.Shumari.gnm1.ann1.8BRS.yml index ca914060..818634ba 100644 --- a/Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/MANIFEST.Shumari.gnm1.ann1.8BRS.yml +++ b/Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/MANIFEST.Shumari.gnm1.ann1.8BRS.yml @@ -14,6 +14,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: vigan.Shumari.gnm1.ann1.8BRS.iprscan.gff3.gz description: InterPro functional information for genes (gff format) - name: vigan.Shumari.gnm1.ann1.8BRS.legfed_v1_0.M65K.gfa.tsv.gz diff --git a/Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/CHECKSUM.VC1973A.gnm6.ann1.M1Qs.md5 b/Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/CHECKSUM.VC1973A.gnm6.ann1.M1Qs.md5 index bfea6019..fd44fe80 100644 --- a/Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/CHECKSUM.VC1973A.gnm6.ann1.M1Qs.md5 +++ b/Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/CHECKSUM.VC1973A.gnm6.ann1.M1Qs.md5 @@ -1,20 +1,22 @@ -3981b8e9757ab5fe74e06905b1da156a Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/CHANGES.VC1973A.gnm6.ann1.M1Qs.txt -ec1ca729197bf7c160af9cc247207ab1 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/MANIFEST.VC1973A.gnm6.ann1.M1Qs.correspondence.yml -008de9f3de3cde30ec46316f174875a3 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/MANIFEST.VC1973A.gnm6.ann1.M1Qs.descriptions.yml -3138f8a52bcb6f3d944daee2ff7d0cdc Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/README.VC1973A.gnm6.ann1.M1Qs.yml -2df4eb15584d44167f4317cf7e3d8731 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.cds.fna.gz -2b7d46eacecbcaa123e04cd03fd9ec80 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.cds.fna.gz.fai -70143b1038481a477d2545607737c6e3 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.cds.fna.gz.gzi -e54775d2925e022d4ccea3ff3898fbdb Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_main.bed.gz -68af0223826b0eaaab1fe0a7ef7ea8ed Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_main.bed.gz.tbi -b49115c3b9bb1988b3fd8a7a61730e9f Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_main.gff3.gz -8430025afcfffc9bb34865328aef9b21 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_main.gff3.gz.tbi -4f99c01eb65d67c16bc96b8cba674f5a Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_mrna.gff3.gz -ba81ed598110db63030b56942f3a94bb Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.legfed_v1_0.M65K.gfa.tsv.gz -ad4b9dcbe85fc79ce821711ec68cca45 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.mrna.fna.gz -b6099d48cfea6adff179faf811142097 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.mrna.fna.gz.fai -dd0d4664649fc33fc260bf8c673937c9 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.mrna.fna.gz.gzi -baec66987b564af1c44a5acf77d01fd7 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.protein.faa.gz -a7f8ec96adf57dd79b9b9be080f4d52a Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.protein.faa.gz.fai -53f1133c9e2b92c0629ff727895a4463 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.protein.faa.gz.gzi -54f6fca2ee765ad281c5e4f39b298cee Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.scaffolds_in_pchr.gff3.gz +3981b8e9757ab5fe74e06905b1da156a ./CHANGES.VC1973A.gnm6.ann1.M1Qs.txt +4f99c01eb65d67c16bc96b8cba674f5a ./vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_mrna.gff3.gz +b49115c3b9bb1988b3fd8a7a61730e9f ./vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_main.gff3.gz +54f6fca2ee765ad281c5e4f39b298cee ./vigra.VC1973A.gnm6.ann1.M1Qs.scaffolds_in_pchr.gff3.gz +3138f8a52bcb6f3d944daee2ff7d0cdc ./README.VC1973A.gnm6.ann1.M1Qs.yml +8430025afcfffc9bb34865328aef9b21 ./vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_main.gff3.gz.tbi +54135bde7f17c03a5c9f15757f4b51e4 ./MANIFEST.VC1973A.gnm6.ann1.M1Qs.yml +2b7d46eacecbcaa123e04cd03fd9ec80 ./vigra.VC1973A.gnm6.ann1.M1Qs.cds.fna.gz.fai +5067d3c7592c61fbe72be8af394e5102 ./BUSCO/vigra.VC1973A.gnm6.ann1.M1Qs.busco.fabales_odb10.short_summary.txt +4984b65db6752e2558d65dad5417603f ./BUSCO/vigra.VC1973A.gnm6.ann1.M1Qs.busco.fabales_odb10.full_table.tsv.gz +2d8cc53743c2c07f405da8204dd6b11e ./BUSCO/vigra.VC1973A.gnm6.ann1.M1Qs.busco.fabales_odb10.short_summary.json +53f1133c9e2b92c0629ff727895a4463 ./vigra.VC1973A.gnm6.ann1.M1Qs.protein.faa.gz.gzi +dd0d4664649fc33fc260bf8c673937c9 ./vigra.VC1973A.gnm6.ann1.M1Qs.mrna.fna.gz.gzi +e54775d2925e022d4ccea3ff3898fbdb ./vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_main.bed.gz +b6099d48cfea6adff179faf811142097 ./vigra.VC1973A.gnm6.ann1.M1Qs.mrna.fna.gz.fai +a7f8ec96adf57dd79b9b9be080f4d52a ./vigra.VC1973A.gnm6.ann1.M1Qs.protein.faa.gz.fai +2df4eb15584d44167f4317cf7e3d8731 ./vigra.VC1973A.gnm6.ann1.M1Qs.cds.fna.gz +baec66987b564af1c44a5acf77d01fd7 ./vigra.VC1973A.gnm6.ann1.M1Qs.protein.faa.gz +70143b1038481a477d2545607737c6e3 ./vigra.VC1973A.gnm6.ann1.M1Qs.cds.fna.gz.gzi +ad4b9dcbe85fc79ce821711ec68cca45 ./vigra.VC1973A.gnm6.ann1.M1Qs.mrna.fna.gz +68af0223826b0eaaab1fe0a7ef7ea8ed ./vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_main.bed.gz.tbi +ba81ed598110db63030b56942f3a94bb ./vigra.VC1973A.gnm6.ann1.M1Qs.legfed_v1_0.M65K.gfa.tsv.gz diff --git a/Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/MANIFEST.VC1973A.gnm6.ann1.M1Qs.yml b/Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/MANIFEST.VC1973A.gnm6.ann1.M1Qs.yml index d827ac72..ddd57436 100644 --- a/Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/MANIFEST.VC1973A.gnm6.ann1.M1Qs.yml +++ b/Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/MANIFEST.VC1973A.gnm6.ann1.M1Qs.yml @@ -10,6 +10,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - Vradi.ver6.cor.gff - name: vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_mrna.gff3.gz diff --git a/Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/CHECKSUM.VC1973A.gnm7.ann1.RWBG.md5 b/Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/CHECKSUM.VC1973A.gnm7.ann1.RWBG.md5 index 09419843..088a6704 100644 --- a/Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/CHECKSUM.VC1973A.gnm7.ann1.RWBG.md5 +++ b/Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/CHECKSUM.VC1973A.gnm7.ann1.RWBG.md5 @@ -1,22 +1,24 @@ -0a3b7ca4d0e5586bec949ef15fc45fcd Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/CHANGES.VC1973A.gnm7.ann1.RWBG.txt -4cc0b831e9db487d784a2ffe5de93c4e Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/MANIFEST.VC1973A.gnm7.ann1.RWBG.correspondence.yml -e26560b02536ec878b825304522653d8 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/MANIFEST.VC1973A.gnm7.ann1.RWBG.descriptions.yml -c91557e0af630d78a42dce304fa70550 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/README.VC1973A.gnm7.ann1.RWBG.yml -0d1a23e9be74ee9864dbe7ac39e1b1af Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.cds.fna.gz -79f86614975384ba02c5953f5321cb2f Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.cds.fna.gz.fai -78953cb269ffd192e20d4730cca75bad Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.cds.fna.gz.gzi -f8e2e271005feced4a148f0233c8b65b Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.featid_map.tsv.gz -7ceb0a390826ddbbef990cd0df3b80e7 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.gene_models_main.bed.gz -4ae7d01d5b3b2f23332b154757cc22f7 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.gene_models_main.bed.gz.tbi -630fdfcf7c39c2f0df611c66cbde5ba5 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.gene_models_main.gff3.gz -e99d4aa9bb7e882f99b17bedba542fbd Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.gene_models_main.gff3.gz.tbi -906b717ddaa12b7e0ebb7c8b34bca9a8 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.gene_models_original.gff3.gz -218c34b875492c78c65f6253f3a357ee Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.iprscan.gff3.gz -f5271471e7ffe8b8869aaf82a6e74161 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.iprscan.gff3.gz.tbi -7e188625ece3b0b17c7388aaf5072975 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.legfed_v1_0.M65K.gfa.tsv.gz -cea9489eaef04ddb3939196568633696 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.mrna.fna.gz -a61068f651525e308415d9b51b6f9d4c Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.mrna.fna.gz.fai -eddb6240c883006b55abae8ef4551b3c Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.mrna.fna.gz.gzi -284c318fc440332638eea0723a8e620a Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.protein.faa.gz -2c063f1c863f6b97dc69aad3019bd727 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.protein.faa.gz.fai -db31c8e3cc0345663a14d261999e3ecc Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.protein.faa.gz.gzi +2c063f1c863f6b97dc69aad3019bd727 ./vigra.VC1973A.gnm7.ann1.RWBG.protein.faa.gz.fai +f5271471e7ffe8b8869aaf82a6e74161 ./vigra.VC1973A.gnm7.ann1.RWBG.iprscan.gff3.gz.tbi +c91557e0af630d78a42dce304fa70550 ./README.VC1973A.gnm7.ann1.RWBG.yml +906b717ddaa12b7e0ebb7c8b34bca9a8 ./vigra.VC1973A.gnm7.ann1.RWBG.gene_models_original.gff3.gz +630fdfcf7c39c2f0df611c66cbde5ba5 ./vigra.VC1973A.gnm7.ann1.RWBG.gene_models_main.gff3.gz +d2ff4ac7f1c52ed362d1252a527fb0da ./BUSCO/vigra.VC1973A.gnm7.ann1.RWBG.busco.fabales_odb10.short_summary.json +005c0810ae92759e9f0a8e9635299dcb ./BUSCO/vigra.VC1973A.gnm7.ann1.RWBG.busco.fabales_odb10.full_table.tsv.gz +0f19cf2269efeb4dd923801a36d4c54a ./BUSCO/vigra.VC1973A.gnm7.ann1.RWBG.busco.fabales_odb10.short_summary.txt +eddb6240c883006b55abae8ef4551b3c ./vigra.VC1973A.gnm7.ann1.RWBG.mrna.fna.gz.gzi +e99d4aa9bb7e882f99b17bedba542fbd ./vigra.VC1973A.gnm7.ann1.RWBG.gene_models_main.gff3.gz.tbi +0d1a23e9be74ee9864dbe7ac39e1b1af ./vigra.VC1973A.gnm7.ann1.RWBG.cds.fna.gz +79f86614975384ba02c5953f5321cb2f ./vigra.VC1973A.gnm7.ann1.RWBG.cds.fna.gz.fai +78953cb269ffd192e20d4730cca75bad ./vigra.VC1973A.gnm7.ann1.RWBG.cds.fna.gz.gzi +218c34b875492c78c65f6253f3a357ee ./vigra.VC1973A.gnm7.ann1.RWBG.iprscan.gff3.gz +284c318fc440332638eea0723a8e620a ./vigra.VC1973A.gnm7.ann1.RWBG.protein.faa.gz +0a3b7ca4d0e5586bec949ef15fc45fcd ./CHANGES.VC1973A.gnm7.ann1.RWBG.txt +a61068f651525e308415d9b51b6f9d4c ./vigra.VC1973A.gnm7.ann1.RWBG.mrna.fna.gz.fai +cea9489eaef04ddb3939196568633696 ./vigra.VC1973A.gnm7.ann1.RWBG.mrna.fna.gz +f8e2e271005feced4a148f0233c8b65b ./vigra.VC1973A.gnm7.ann1.RWBG.featid_map.tsv.gz +f8c4a66c0b7d1400133a33fae9a74257 ./MANIFEST.VC1973A.gnm7.ann1.RWBG.yml +4ae7d01d5b3b2f23332b154757cc22f7 ./vigra.VC1973A.gnm7.ann1.RWBG.gene_models_main.bed.gz.tbi +7ceb0a390826ddbbef990cd0df3b80e7 ./vigra.VC1973A.gnm7.ann1.RWBG.gene_models_main.bed.gz +db31c8e3cc0345663a14d261999e3ecc ./vigra.VC1973A.gnm7.ann1.RWBG.protein.faa.gz.gzi +7e188625ece3b0b17c7388aaf5072975 ./vigra.VC1973A.gnm7.ann1.RWBG.legfed_v1_0.M65K.gfa.tsv.gz diff --git a/Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/MANIFEST.VC1973A.gnm7.ann1.RWBG.yml b/Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/MANIFEST.VC1973A.gnm7.ann1.RWBG.yml index abd12389..b1600fa3 100644 --- a/Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/MANIFEST.VC1973A.gnm7.ann1.RWBG.yml +++ b/Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/MANIFEST.VC1973A.gnm7.ann1.RWBG.yml @@ -14,6 +14,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - Vradi.pacbio.gapfilled.final.all.standard.gff.gz - name: vigra.VC1973A.gnm7.ann1.RWBG.gene_models_original.gff3.gz diff --git a/Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/CHECKSUM.CB5-2.gnm1.ann1.0GKC.md5 b/Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/CHECKSUM.CB5-2.gnm1.ann1.0GKC.md5 index 304c3f53..5cb2319c 100644 --- a/Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/CHECKSUM.CB5-2.gnm1.ann1.0GKC.md5 +++ b/Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/CHECKSUM.CB5-2.gnm1.ann1.0GKC.md5 @@ -1,25 +1,29 @@ -005c83489c24d2582ab38b06bd294b83 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/CHANGES.CB5-2.gnm1.ann1.0GKC.txt -323521cc69cf9b55b84583b0d1bb7316 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/README.CB5-2.gnm1.ann1.0GKC.yml -3188f2f9c0f99c99ffbe0f35912f04fa Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.cds_primary.fna.gz -651cf606e88e890f2ec1b062e1275937 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.cds_primary.fna.gz.fai -1f7220cd7435b9fe5ef9f9b88930bf56 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.cds_primary.fna.gz.gzi -9bbff65172df9cd3923102897b77e80f Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.cds.fna.gz -a6b5bdf1dda391a249c393b6ea9179bc Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.cds.fna.gz.fai -f6ca34b6502b9c4b467f76cce2eb76a3 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.cds.fna.gz.gzi -d7bc82f8d77a6895493e0b28233b8102 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.gene_models_main.bed.gz -6d646e56d30798b9351a4099957d87c9 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.gene_models_main.bed.gz.tbi -1b35c43b50a44544fd813f9b4efef353 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.gene_models_main.gff3.gz -a249aca0732c5715b9a6b1a974feb936 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.gene_models_main.gff3.gz.tbi -77370c4b56d0309e53c79e574acba979 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.legfed_v1_0.M65K.gfa.tsv.gz -1c1944f9a9e376cd07cf0e2b4df0f723 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.mrna_primary.fna.gz -6082da6f0254a7b11a60a44aed0465e6 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.mrna_primary.fna.gz.fai -4504016cf7fbff2a2d3ab2321ef5490b Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.mrna_primary.fna.gz.gzi -7d805ea73927a135662e1b0bd5297f86 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.mrna.fna.gz -1daa55e56f4d5090378e0402035d16cd Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.mrna.fna.gz.fai -6bd7d3c583a330367b1169f57ccda2dd Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.mrna.fna.gz.gzi -71f83b1ae99ff75f199806561d821200 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.protein_primary.faa.gz -36fe893411e780a9d9a4ec6173c6c8cf Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.protein_primary.faa.gz.fai -9c7d6661ec1cda6e1ad0c5126df524ac Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.protein_primary.faa.gz.gzi -42bf7a06a7f92a0728b88df925b9d812 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.protein.faa.gz -a7ef950f6a1173cf9667058674dcd0a4 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.protein.faa.gz.fai -56dfc3b2d129fcefe206f648b20d84e9 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.protein.faa.gz.gzi +1c1944f9a9e376cd07cf0e2b4df0f723 ./vigun.CB5-2.gnm1.ann1.0GKC.mrna_primary.fna.gz +a249aca0732c5715b9a6b1a974feb936 ./vigun.CB5-2.gnm1.ann1.0GKC.gene_models_main.gff3.gz.tbi +42bf7a06a7f92a0728b88df925b9d812 ./vigun.CB5-2.gnm1.ann1.0GKC.protein.faa.gz +1b35c43b50a44544fd813f9b4efef353 ./vigun.CB5-2.gnm1.ann1.0GKC.gene_models_main.gff3.gz +e1a33b6ea984ca8722fae074ae4b3cc8 ./BUSCO/vigun.CB5-2.gnm1.ann1.0GKC.busco.fabales_odb10.short_summary.txt +e7b2723590542af5923f0b27cbf296e4 ./BUSCO/vigun.CB5-2.gnm1.ann1.0GKC.busco.fabales_odb10.full_table.tsv.gz +d1a327d109874052d7b380959d001ddc ./BUSCO/vigun.CB5-2.gnm1.ann1.0GKC.busco.fabales_odb10.short_summary.json +f6ca34b6502b9c4b467f76cce2eb76a3 ./vigun.CB5-2.gnm1.ann1.0GKC.cds.fna.gz.gzi +3188f2f9c0f99c99ffbe0f35912f04fa ./vigun.CB5-2.gnm1.ann1.0GKC.cds_primary.fna.gz +005c83489c24d2582ab38b06bd294b83 ./CHANGES.CB5-2.gnm1.ann1.0GKC.txt +651cf606e88e890f2ec1b062e1275937 ./vigun.CB5-2.gnm1.ann1.0GKC.cds_primary.fna.gz.fai +a7ef950f6a1173cf9667058674dcd0a4 ./vigun.CB5-2.gnm1.ann1.0GKC.protein.faa.gz.fai +323521cc69cf9b55b84583b0d1bb7316 ./README.CB5-2.gnm1.ann1.0GKC.yml +6082da6f0254a7b11a60a44aed0465e6 ./vigun.CB5-2.gnm1.ann1.0GKC.mrna_primary.fna.gz.fai +1daa55e56f4d5090378e0402035d16cd ./vigun.CB5-2.gnm1.ann1.0GKC.mrna.fna.gz.fai +9c7d6661ec1cda6e1ad0c5126df524ac ./vigun.CB5-2.gnm1.ann1.0GKC.protein_primary.faa.gz.gzi +d7bc82f8d77a6895493e0b28233b8102 ./vigun.CB5-2.gnm1.ann1.0GKC.gene_models_main.bed.gz +6bd7d3c583a330367b1169f57ccda2dd ./vigun.CB5-2.gnm1.ann1.0GKC.mrna.fna.gz.gzi +4504016cf7fbff2a2d3ab2321ef5490b ./vigun.CB5-2.gnm1.ann1.0GKC.mrna_primary.fna.gz.gzi +36fe893411e780a9d9a4ec6173c6c8cf ./vigun.CB5-2.gnm1.ann1.0GKC.protein_primary.faa.gz.fai +1f7220cd7435b9fe5ef9f9b88930bf56 ./vigun.CB5-2.gnm1.ann1.0GKC.cds_primary.fna.gz.gzi +56dfc3b2d129fcefe206f648b20d84e9 ./vigun.CB5-2.gnm1.ann1.0GKC.protein.faa.gz.gzi +71f83b1ae99ff75f199806561d821200 ./vigun.CB5-2.gnm1.ann1.0GKC.protein_primary.faa.gz +7d805ea73927a135662e1b0bd5297f86 ./vigun.CB5-2.gnm1.ann1.0GKC.mrna.fna.gz +8b7dad684cf6bd0047e8cb24522465d8 ./MANIFEST.CB5-2.gnm1.ann1.0GKC.yml +9bbff65172df9cd3923102897b77e80f ./vigun.CB5-2.gnm1.ann1.0GKC.cds.fna.gz +6d646e56d30798b9351a4099957d87c9 ./vigun.CB5-2.gnm1.ann1.0GKC.gene_models_main.bed.gz.tbi +77370c4b56d0309e53c79e574acba979 ./vigun.CB5-2.gnm1.ann1.0GKC.legfed_v1_0.M65K.gfa.tsv.gz +a6b5bdf1dda391a249c393b6ea9179bc ./vigun.CB5-2.gnm1.ann1.0GKC.cds.fna.gz.fai diff --git a/Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/MANIFEST.CB5-2.gnm1.ann1.0GKC.yml b/Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/MANIFEST.CB5-2.gnm1.ann1.0GKC.yml index 6fd44b50..cb9751c8 100644 --- a/Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/MANIFEST.CB5-2.gnm1.ann1.0GKC.yml +++ b/Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/MANIFEST.CB5-2.gnm1.ann1.0GKC.yml @@ -12,6 +12,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: vigun.CB5-2.gnm1.ann1.0GKC.legfed_v1_0.M65K.gfa.tsv.gz description: gene family assignments - name: vigun.CB5-2.gnm1.ann1.0GKC.mrna_primary.fna.gz diff --git a/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/CHECKSUM.IT97K-499-35.gnm1.ann1.zb5D.md5 b/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/CHECKSUM.IT97K-499-35.gnm1.ann1.zb5D.md5 index d6ac7a77..7ff1c273 100644 --- a/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/CHECKSUM.IT97K-499-35.gnm1.ann1.zb5D.md5 +++ b/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/CHECKSUM.IT97K-499-35.gnm1.ann1.zb5D.md5 @@ -1,31 +1,32 @@ -7754456de1833991052c2f5cc13e8b2f Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/CHANGES.IT97K-499-35.gnm1.ann1.zb5D.txt -56c64cd8ef9a9ac02863aad060ba9631 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/MANIFEST.IT97K-499-35.gnm1.ann1.zb5D.correspondence.yml -8009a2275028abca6117f1830eafa7aa Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/MANIFEST.IT97K-499-35.gnm1.ann1.zb5D.descriptions.yml -141f257cc0c63237dcd01bd1258e0df0 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/README.IT97K-499-35.gnm1.ann1.zb5D.yml -9ba75f0cde0231e31ecee2a4d2418c89 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.annotation_info.txt.gz -e8faa761f98a636fe96cf2f24f1e1154 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.cds_primary.fna.gz -35cb6e49fc5834dc91e41ee515860f12 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.cds_primary.fna.gz.fai -c2fdeba6217ef9aa86e5540b6378f7f4 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.cds_primary.fna.gz.gzi -aeb6958951d3d9d26e436aa30bd71b23 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.cds.fna.gz -8a4ac209461742ce95fa66516edf6bbd Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.cds.fna.gz.fai -1879b5699756212e7969690d07b0e67c Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.cds.fna.gz.gzi -0f4075242f46ea398b66476981232e38 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.defline.txt.gz -e2bd6e728c40cda6eaabd8fa31654e60 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models_main.bed.gz -cebd1bb325d717c686e497aa8bf5305b Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models_main.bed.gz.tbi -1ef2de725286f823cd4f1ebf25efe949 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models_main.gff3.gz -c205b41c9f5acbe9486d291a04947d26 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models_main.gff3.gz.tbi -d56617a6d6697002fd5d5c5da155f4ed Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models.gff3.gz -1abe8951b4787b21b8c535480a8a8ad8 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.legfed_v1_0.M65K.gfa.tsv.gz -c87c3a301774003891544a5e15cea6d3 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna_primary.fna.gz -b73d632f1a2710eeb9ac2953e9cc87fd Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna_primary.fna.gz.fai -a25e7a4adce25d73114190f76abe8831 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna_primary.fna.gz.gzi -540aa5657f796c3dfe02eef218b5b70f Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna.fna.gz -3c07c6013315aabeeef85042874a5c4e Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna.fna.gz.fai -6081703fd1e23d70e41642fec528a5ea Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna.fna.gz.gzi -5a3d97086a45b708b790be8e18ca6e82 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.protein_primary.faa.gz -766efb27d1a66ae0ba787f237aa9ce90 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.protein_primary.faa.gz.fai -4ac4b29c16efa2c03b4f18c1bd4a810d Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.protein_primary.faa.gz.gzi -819064021b1370447aec6a4f1a806681 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.protein.faa.gz -f31c6871962e77b8dffab9edf7e7e065 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.protein.faa.gz.fai -098a0f40623c5ada75fcd287feb69804 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.protein.faa.gz.gzi -d19d8985e5e52277bd2f953342905b63 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.repeatmasking.gff3.gz +766efb27d1a66ae0ba787f237aa9ce90 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.protein_primary.faa.gz.fai +e2bd6e728c40cda6eaabd8fa31654e60 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models_main.bed.gz +a25e7a4adce25d73114190f76abe8831 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna_primary.fna.gz.gzi +6081703fd1e23d70e41642fec528a5ea ./vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna.fna.gz.gzi +cebd1bb325d717c686e497aa8bf5305b ./vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models_main.bed.gz.tbi +1abe8951b4787b21b8c535480a8a8ad8 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.legfed_v1_0.M65K.gfa.tsv.gz +e8faa761f98a636fe96cf2f24f1e1154 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.cds_primary.fna.gz +0f4075242f46ea398b66476981232e38 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.defline.txt.gz +141f257cc0c63237dcd01bd1258e0df0 ./README.IT97K-499-35.gnm1.ann1.zb5D.yml +1879b5699756212e7969690d07b0e67c ./vigun.IT97K-499-35.gnm1.ann1.zb5D.cds.fna.gz.gzi +f31c6871962e77b8dffab9edf7e7e065 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.protein.faa.gz.fai +819064021b1370447aec6a4f1a806681 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.protein.faa.gz +5a3d97086a45b708b790be8e18ca6e82 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.protein_primary.faa.gz +aeb6958951d3d9d26e436aa30bd71b23 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.cds.fna.gz +c2fdeba6217ef9aa86e5540b6378f7f4 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.cds_primary.fna.gz.gzi +7879c2431cda94f5f530adf13af2646d ./BUSCO/vigun.IT97K-499-35.gnm1.ann1.zb5D.busco.fabales_odb10.short_summary.txt +64df02b110ac43ff0a44b55aef387ee6 ./BUSCO/vigun.IT97K-499-35.gnm1.ann1.zb5D.busco.fabales_odb10.short_summary.json +883298e236ff320be78cad40610ff75b ./BUSCO/vigun.IT97K-499-35.gnm1.ann1.zb5D.busco.fabales_odb10.full_table.tsv.gz +9ba75f0cde0231e31ecee2a4d2418c89 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.annotation_info.txt.gz +35cb6e49fc5834dc91e41ee515860f12 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.cds_primary.fna.gz.fai +7754456de1833991052c2f5cc13e8b2f ./CHANGES.IT97K-499-35.gnm1.ann1.zb5D.txt +1ef2de725286f823cd4f1ebf25efe949 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models_main.gff3.gz +c94b6bbde5a10cff8b27a35d031d4055 ./MANIFEST.IT97K-499-35.gnm1.ann1.zb5D.yml +d19d8985e5e52277bd2f953342905b63 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.repeatmasking.gff3.gz +8a4ac209461742ce95fa66516edf6bbd ./vigun.IT97K-499-35.gnm1.ann1.zb5D.cds.fna.gz.fai +098a0f40623c5ada75fcd287feb69804 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.protein.faa.gz.gzi +540aa5657f796c3dfe02eef218b5b70f ./vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna.fna.gz +b73d632f1a2710eeb9ac2953e9cc87fd ./vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna_primary.fna.gz.fai +3c07c6013315aabeeef85042874a5c4e ./vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna.fna.gz.fai +c87c3a301774003891544a5e15cea6d3 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna_primary.fna.gz +c205b41c9f5acbe9486d291a04947d26 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models_main.gff3.gz.tbi +4ac4b29c16efa2c03b4f18c1bd4a810d ./vigun.IT97K-499-35.gnm1.ann1.zb5D.protein_primary.faa.gz.gzi diff --git a/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/MANIFEST.IT97K-499-35.gnm1.ann1.zb5D.yml b/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/MANIFEST.IT97K-499-35.gnm1.ann1.zb5D.yml index 42825400..da0e4de4 100644 --- a/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/MANIFEST.IT97K-499-35.gnm1.ann1.zb5D.yml +++ b/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/MANIFEST.IT97K-499-35.gnm1.ann1.zb5D.yml @@ -18,6 +18,7 @@ description: Gene models - main applications: - mines + - jbrowse-index prior_names: - Vunguiculata_469_v1.1.gene_exons.gff3 - name: vigun.IT97K-499-35.gnm1.ann1.zb5D.legfed_v1_0.M65K.gfa.tsv.gz diff --git a/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/CHECKSUM.IT97K-499-35.gnm1.ann2.FD7K.md5 b/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/CHECKSUM.IT97K-499-35.gnm1.ann2.FD7K.md5 index b19bd98a..984048de 100644 --- a/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/CHECKSUM.IT97K-499-35.gnm1.ann2.FD7K.md5 +++ b/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/CHECKSUM.IT97K-499-35.gnm1.ann2.FD7K.md5 @@ -1,6 +1,6 @@ 919946bff888c89203628cd98823d81e ./vigun.IT97K-499-35.gnm1.ann2.FD7K.protein_primary.faa.gz.gzi 701ca7b8faaf3433f357e2b76597bf61 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.mrna.fna.gz.gzi -3028dbd4d0bf1734766a79b6627598ac ./MANIFEST.IT97K-499-35.gnm1.ann2.FD7K.yml +44f32eb0c2fb8acaaa57091d92f8ee6b ./MANIFEST.IT97K-499-35.gnm1.ann2.FD7K.yml d16ba1c29b8ecd364e963c4995d805ed ./BUSCO/vigun.IT97K-499-35.gnm1.ann2.FD7K.busco.fabales_odb10.short_summary.json 68f322a8827e1f9aadb83439d00c4d98 ./BUSCO/vigun.IT97K-499-35.gnm1.ann2.FD7K.busco.fabales_odb10.full_table.tsv.gz 593e50097f8d6ebc1748e87d4283a5b5 ./BUSCO/vigun.IT97K-499-35.gnm1.ann2.FD7K.busco.fabales_odb10.short_summary.txt diff --git a/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/MANIFEST.IT97K-499-35.gnm1.ann2.FD7K.yml b/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/MANIFEST.IT97K-499-35.gnm1.ann2.FD7K.yml index 1b90efd5..b2de3b62 100644 --- a/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/MANIFEST.IT97K-499-35.gnm1.ann2.FD7K.yml +++ b/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/MANIFEST.IT97K-499-35.gnm1.ann2.FD7K.yml @@ -12,6 +12,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: vigun.IT97K-499-35.gnm1.ann2.FD7K.legfed_v1_0.M65K.gfa.tsv.gz description: gene family assignments - name: vigun.IT97K-499-35.gnm1.ann2.FD7K.mrna_primary.fna.gz diff --git a/Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/CHECKSUM.Sanzi.gnm1.ann1.HFH8.md5 b/Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/CHECKSUM.Sanzi.gnm1.ann1.HFH8.md5 index 9f783b12..3c975b14 100644 --- a/Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/CHECKSUM.Sanzi.gnm1.ann1.HFH8.md5 +++ b/Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/CHECKSUM.Sanzi.gnm1.ann1.HFH8.md5 @@ -1,25 +1,29 @@ -621c4b274d1463f999c238998dd78fd1 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/CHANGES.Sanzi.gnm1.ann1.HFH8.txt -2e587278c4832c9b12410f98fb75789b Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/README.Sanzi.gnm1.ann1.HFH8.yml -7852623ff22f40da17440f29715b7972 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.cds_primary.fna.gz -c1b39c01637f56580de1ef6cf3e561d7 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.cds_primary.fna.gz.fai -788e7be142211bf1ba3253e5e179e4dc Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.cds_primary.fna.gz.gzi -8f9edabee1739536cec716195e4951b6 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.cds.fna.gz -30c1116b8bdca975149e25a7a8969923 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.cds.fna.gz.fai -77f4a21d3125063505e016293be88328 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.cds.fna.gz.gzi -556f236e8430553908fad6028ee1186e Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.gene_models_main.bed.gz -292c30186b59852bcb2d077762aca57b Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.gene_models_main.bed.gz.tbi -2231bdd405955595e464c9d51c1ef1fa Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.gene_models_main.gff3.gz -ad7b0eee8e2221c1bfb8c52cf904437c Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.gene_models_main.gff3.gz.tbi -32a5bf900f633ba4b67ee1bde654b74c Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.legfed_v1_0.M65K.gfa.tsv.gz -81a0bef07686892ef6e719dfd2c1717d Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.mrna_primary.fna.gz -15e328332270b562da20b3d21dc01acf Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.mrna_primary.fna.gz.fai -7b446ed479ea75b6efb310ee51aff5bc Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.mrna_primary.fna.gz.gzi -5107ce621fed84f4d82cbe9513db2074 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.mrna.fna.gz -f224b3ed151153c85181c2cab24b9926 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.mrna.fna.gz.fai -13b68dec6189f9fea6f8460bb6d805c0 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.mrna.fna.gz.gzi -84159533c5a87ad650870ea939cf54ce Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.protein_primary.faa.gz -a2c45efe8858297f803d2ccba2eabb0c Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.protein_primary.faa.gz.fai -eee5ed2f66df44506cb2a5ca0c929941 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.protein_primary.faa.gz.gzi -2dc181c6c56d30b03836113dc14f3333 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.protein.faa.gz -2761afc3963c9ff983435e451d7b60e2 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.protein.faa.gz.fai -0259d22e3def2d362fb1dfc4e84b8ea3 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.protein.faa.gz.gzi +5107ce621fed84f4d82cbe9513db2074 ./vigun.Sanzi.gnm1.ann1.HFH8.mrna.fna.gz +ad7b0eee8e2221c1bfb8c52cf904437c ./vigun.Sanzi.gnm1.ann1.HFH8.gene_models_main.gff3.gz.tbi +556f236e8430553908fad6028ee1186e ./vigun.Sanzi.gnm1.ann1.HFH8.gene_models_main.bed.gz +7b446ed479ea75b6efb310ee51aff5bc ./vigun.Sanzi.gnm1.ann1.HFH8.mrna_primary.fna.gz.gzi +f224b3ed151153c85181c2cab24b9926 ./vigun.Sanzi.gnm1.ann1.HFH8.mrna.fna.gz.fai +2dc181c6c56d30b03836113dc14f3333 ./vigun.Sanzi.gnm1.ann1.HFH8.protein.faa.gz +0259d22e3def2d362fb1dfc4e84b8ea3 ./vigun.Sanzi.gnm1.ann1.HFH8.protein.faa.gz.gzi +a2c45efe8858297f803d2ccba2eabb0c ./vigun.Sanzi.gnm1.ann1.HFH8.protein_primary.faa.gz.fai +32a5bf900f633ba4b67ee1bde654b74c ./vigun.Sanzi.gnm1.ann1.HFH8.legfed_v1_0.M65K.gfa.tsv.gz +84159533c5a87ad650870ea939cf54ce ./vigun.Sanzi.gnm1.ann1.HFH8.protein_primary.faa.gz +77f4a21d3125063505e016293be88328 ./vigun.Sanzi.gnm1.ann1.HFH8.cds.fna.gz.gzi +292c30186b59852bcb2d077762aca57b ./vigun.Sanzi.gnm1.ann1.HFH8.gene_models_main.bed.gz.tbi +788e7be142211bf1ba3253e5e179e4dc ./vigun.Sanzi.gnm1.ann1.HFH8.cds_primary.fna.gz.gzi +8f9edabee1739536cec716195e4951b6 ./vigun.Sanzi.gnm1.ann1.HFH8.cds.fna.gz +81a0bef07686892ef6e719dfd2c1717d ./vigun.Sanzi.gnm1.ann1.HFH8.mrna_primary.fna.gz +eee5ed2f66df44506cb2a5ca0c929941 ./vigun.Sanzi.gnm1.ann1.HFH8.protein_primary.faa.gz.gzi +2231bdd405955595e464c9d51c1ef1fa ./vigun.Sanzi.gnm1.ann1.HFH8.gene_models_main.gff3.gz +c1b39c01637f56580de1ef6cf3e561d7 ./vigun.Sanzi.gnm1.ann1.HFH8.cds_primary.fna.gz.fai +30c1116b8bdca975149e25a7a8969923 ./vigun.Sanzi.gnm1.ann1.HFH8.cds.fna.gz.fai +2761afc3963c9ff983435e451d7b60e2 ./vigun.Sanzi.gnm1.ann1.HFH8.protein.faa.gz.fai +b27a36809c7f831b18861ca8fb0562d5 ./MANIFEST.Sanzi.gnm1.ann1.HFH8.yml +2e587278c4832c9b12410f98fb75789b ./README.Sanzi.gnm1.ann1.HFH8.yml +7852623ff22f40da17440f29715b7972 ./vigun.Sanzi.gnm1.ann1.HFH8.cds_primary.fna.gz +13b68dec6189f9fea6f8460bb6d805c0 ./vigun.Sanzi.gnm1.ann1.HFH8.mrna.fna.gz.gzi +15e328332270b562da20b3d21dc01acf ./vigun.Sanzi.gnm1.ann1.HFH8.mrna_primary.fna.gz.fai +621c4b274d1463f999c238998dd78fd1 ./CHANGES.Sanzi.gnm1.ann1.HFH8.txt +a84b489cae267566a37fcd2104e0d893 ./BUSCO/vigun.Sanzi.gnm1.ann1.HFH8.busco.fabales_odb10.full_table.tsv.gz +7fe6197e11fb41700c6329e96b054628 ./BUSCO/vigun.Sanzi.gnm1.ann1.HFH8.busco.fabales_odb10.short_summary.json +9c307e3167d0a033fe47701ff6b22fc6 ./BUSCO/vigun.Sanzi.gnm1.ann1.HFH8.busco.fabales_odb10.short_summary.txt diff --git a/Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/MANIFEST.Sanzi.gnm1.ann1.HFH8.yml b/Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/MANIFEST.Sanzi.gnm1.ann1.HFH8.yml index fa581507..6b12197b 100644 --- a/Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/MANIFEST.Sanzi.gnm1.ann1.HFH8.yml +++ b/Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/MANIFEST.Sanzi.gnm1.ann1.HFH8.yml @@ -12,6 +12,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: vigun.Sanzi.gnm1.ann1.HFH8.legfed_v1_0.M65K.gfa.tsv.gz description: gene family assignments - name: vigun.Sanzi.gnm1.ann1.HFH8.mrna_primary.fna.gz diff --git a/Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/CHECKSUM.Suvita2.gnm1.ann1.1PF6.md5 b/Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/CHECKSUM.Suvita2.gnm1.ann1.1PF6.md5 index 623ab9e3..b22896ae 100644 --- a/Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/CHECKSUM.Suvita2.gnm1.ann1.1PF6.md5 +++ b/Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/CHECKSUM.Suvita2.gnm1.ann1.1PF6.md5 @@ -1,25 +1,29 @@ -621c4b274d1463f999c238998dd78fd1 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/CHANGES.Suvita2.gnm1.ann1.1PF6.txt -b5a471418fd76508e0e779fd778d075a Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/README.Suvita2.gnm1.ann1.1PF6.yml -5b1b1048278a04b75feabc0d642de993 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.cds_primary.fna.gz -52153cb8b14e50411bc91fcf07a031dc Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.cds_primary.fna.gz.fai -2c0e7db968b1f1252c6b03d4f5c25025 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.cds_primary.fna.gz.gzi -b5288fffa2ec47c546ce36491875bf1a Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.cds.fna.gz -6a8d9d0d668953a14ef34a91817d310d Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.cds.fna.gz.fai -714ee6a2645df21471bc6907bcc920f5 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.cds.fna.gz.gzi -5dcea10a7adf5fb8dec75d727df85e9d Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.gene_models_main.bed.gz -4cfdaabb518ce8d31d0e313be5842031 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.gene_models_main.bed.gz.tbi -bb82b0f2405c3e6ab7d0f4f322e09f2a Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.gene_models_main.gff3.gz -eb9a6b31179e9ba9a6b1e1cc7a405b16 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.gene_models_main.gff3.gz.tbi -75390f2708a9f54fa06f2fb745cf662a Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.legfed_v1_0.M65K.gfa.tsv.gz -ac0afb663fd923e97e7e883c3c14e839 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.mrna_primary.fna.gz -604e54c75f90a86cac58ab6ab2f50091 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.mrna_primary.fna.gz.fai -efde6543f031a425b35d3b10519fdc8e Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.mrna_primary.fna.gz.gzi -ecdd7caa2f706f54340170e585453a2b Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.mrna.fna.gz -e71cd85fa7509766da238cb491390b1b Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.mrna.fna.gz.fai -bc72e58b627148fd95d9fe9e026dfe1b Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.mrna.fna.gz.gzi -b801b64c402769f6a423748e9f81f7d1 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.protein_primary.faa.gz -2bd78e145936e615bf7c8a996b1496a0 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.protein_primary.faa.gz.fai -b5c67310f8b0adca4ea31cb8450b0345 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.protein_primary.faa.gz.gzi -2bcc7c690086d7986be81cf66048541d Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.protein.faa.gz -6c6b9cbdca57879578a6e6510d3ae963 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.protein.faa.gz.fai -0eeac0bb313899b25788eca1a82d9676 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.protein.faa.gz.gzi +b5288fffa2ec47c546ce36491875bf1a ./vigun.Suvita2.gnm1.ann1.1PF6.cds.fna.gz +6c6b9cbdca57879578a6e6510d3ae963 ./vigun.Suvita2.gnm1.ann1.1PF6.protein.faa.gz.fai +4cfdaabb518ce8d31d0e313be5842031 ./vigun.Suvita2.gnm1.ann1.1PF6.gene_models_main.bed.gz.tbi +75390f2708a9f54fa06f2fb745cf662a ./vigun.Suvita2.gnm1.ann1.1PF6.legfed_v1_0.M65K.gfa.tsv.gz +52023b0bfe082033c76eebb0015e98bf ./MANIFEST.Suvita2.gnm1.ann1.1PF6.yml +5b1b1048278a04b75feabc0d642de993 ./vigun.Suvita2.gnm1.ann1.1PF6.cds_primary.fna.gz +714ee6a2645df21471bc6907bcc920f5 ./vigun.Suvita2.gnm1.ann1.1PF6.cds.fna.gz.gzi +8b87ba841171abe7eef1965893d87335 ./BUSCO/vigun.Suvita2.gnm1.ann1.1PF6.busco.fabales_odb10.full_table.tsv.gz +fc2ca5ae82a4d9f4b9e8378f0951777f ./BUSCO/vigun.Suvita2.gnm1.ann1.1PF6.busco.fabales_odb10.short_summary.txt +0e05badaa42a9544925ccf0efd563a40 ./BUSCO/vigun.Suvita2.gnm1.ann1.1PF6.busco.fabales_odb10.short_summary.json +2bcc7c690086d7986be81cf66048541d ./vigun.Suvita2.gnm1.ann1.1PF6.protein.faa.gz +52153cb8b14e50411bc91fcf07a031dc ./vigun.Suvita2.gnm1.ann1.1PF6.cds_primary.fna.gz.fai +bc72e58b627148fd95d9fe9e026dfe1b ./vigun.Suvita2.gnm1.ann1.1PF6.mrna.fna.gz.gzi +621c4b274d1463f999c238998dd78fd1 ./CHANGES.Suvita2.gnm1.ann1.1PF6.txt +ac0afb663fd923e97e7e883c3c14e839 ./vigun.Suvita2.gnm1.ann1.1PF6.mrna_primary.fna.gz +604e54c75f90a86cac58ab6ab2f50091 ./vigun.Suvita2.gnm1.ann1.1PF6.mrna_primary.fna.gz.fai +2bd78e145936e615bf7c8a996b1496a0 ./vigun.Suvita2.gnm1.ann1.1PF6.protein_primary.faa.gz.fai +e71cd85fa7509766da238cb491390b1b ./vigun.Suvita2.gnm1.ann1.1PF6.mrna.fna.gz.fai +efde6543f031a425b35d3b10519fdc8e ./vigun.Suvita2.gnm1.ann1.1PF6.mrna_primary.fna.gz.gzi +b5c67310f8b0adca4ea31cb8450b0345 ./vigun.Suvita2.gnm1.ann1.1PF6.protein_primary.faa.gz.gzi +5dcea10a7adf5fb8dec75d727df85e9d ./vigun.Suvita2.gnm1.ann1.1PF6.gene_models_main.bed.gz +b801b64c402769f6a423748e9f81f7d1 ./vigun.Suvita2.gnm1.ann1.1PF6.protein_primary.faa.gz +2c0e7db968b1f1252c6b03d4f5c25025 ./vigun.Suvita2.gnm1.ann1.1PF6.cds_primary.fna.gz.gzi +b5a471418fd76508e0e779fd778d075a ./README.Suvita2.gnm1.ann1.1PF6.yml +6a8d9d0d668953a14ef34a91817d310d ./vigun.Suvita2.gnm1.ann1.1PF6.cds.fna.gz.fai +ecdd7caa2f706f54340170e585453a2b ./vigun.Suvita2.gnm1.ann1.1PF6.mrna.fna.gz +eb9a6b31179e9ba9a6b1e1cc7a405b16 ./vigun.Suvita2.gnm1.ann1.1PF6.gene_models_main.gff3.gz.tbi +bb82b0f2405c3e6ab7d0f4f322e09f2a ./vigun.Suvita2.gnm1.ann1.1PF6.gene_models_main.gff3.gz +0eeac0bb313899b25788eca1a82d9676 ./vigun.Suvita2.gnm1.ann1.1PF6.protein.faa.gz.gzi diff --git a/Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/MANIFEST.Suvita2.gnm1.ann1.1PF6.yml b/Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/MANIFEST.Suvita2.gnm1.ann1.1PF6.yml index da4b198a..7a5c90a7 100644 --- a/Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/MANIFEST.Suvita2.gnm1.ann1.1PF6.yml +++ b/Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/MANIFEST.Suvita2.gnm1.ann1.1PF6.yml @@ -12,6 +12,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: vigun.Suvita2.gnm1.ann1.1PF6.legfed_v1_0.M65K.gfa.tsv.gz description: gene family assignments - name: vigun.Suvita2.gnm1.ann1.1PF6.mrna_primary.fna.gz diff --git a/Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/CHECKSUM.TZ30.gnm1.ann2.59NL.md5 b/Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/CHECKSUM.TZ30.gnm1.ann2.59NL.md5 index d927bee5..f100475a 100644 --- a/Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/CHECKSUM.TZ30.gnm1.ann2.59NL.md5 +++ b/Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/CHECKSUM.TZ30.gnm1.ann2.59NL.md5 @@ -1,25 +1,29 @@ -621c4b274d1463f999c238998dd78fd1 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/CHANGES.TZ30.gnm1.ann2.59NL.txt -a56a7e2166c8a4e932b3f581b1641c41 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/README.TZ30.gnm1.ann2.59NL.yml -cf4349bb3f08695a41bc55ecf99444b0 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.cds_primary.fna.gz -c852b4e1f2b0b7850e9e897e35e0ab6b Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.cds_primary.fna.gz.fai -722906af3690bd096baa1bdc834c6a4d Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.cds_primary.fna.gz.gzi -f1797ee0ad55c53ad8635955f92462cf Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.cds.fna.gz -de56908bc1123fcaf87aedba44b2c652 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.cds.fna.gz.fai -44869633f4bf44a1a3152165b4ceef5c Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.cds.fna.gz.gzi -184dc6792bba72df0dbaf26fe1475800 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.gene_models_main.bed.gz -c5a8b6866c1db6f62efa8ee705ecb85e Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.gene_models_main.bed.gz.tbi -cf36bea133e65bf1cd7aebbcf0a16b16 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.gene_models_main.gff3.gz -00737cb72cba245bc3481f68f67ac17c Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.gene_models_main.gff3.gz.tbi -3db5e631e147587ef2ab2765b10f903e Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.legfed_v1_0.M65K.gfa.tsv.gz -89b703ab54c28356fd5cf0ffd54dbc0a Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.mrna_primary.fna.gz -7fd7e2224d7e3616319d154f6022c9a1 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.mrna_primary.fna.gz.fai -129ce47bc7d91e4bb01b795b39453c82 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.mrna_primary.fna.gz.gzi -688bc6a5fbceb6088141dd9d6fe06bae Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.mrna.fna.gz -0891e8f469f1d9d0730d566f57013c9e Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.mrna.fna.gz.fai -d273033e45d420f703d9d5da064c2bd8 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.mrna.fna.gz.gzi -db8323a6e304fa94374399d54ddbdbb2 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.protein_primary.faa.gz -cff481666f3347b9ae739026a85d5bb8 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.protein_primary.faa.gz.fai -73da70f7d9dcb28388b99a331b327b73 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.protein_primary.faa.gz.gzi -dfa4aa2d08bf5f8ad706b83907e8dca5 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.protein.faa.gz -69450fcd8bf1cf738b71d5965bd54d2c Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.protein.faa.gz.fai -b827cd8ae4d3e55f14ad227e9319295e Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.protein.faa.gz.gzi +621c4b274d1463f999c238998dd78fd1 ./CHANGES.TZ30.gnm1.ann2.59NL.txt +69450fcd8bf1cf738b71d5965bd54d2c ./vigun.TZ30.gnm1.ann2.59NL.protein.faa.gz.fai +0891e8f469f1d9d0730d566f57013c9e ./vigun.TZ30.gnm1.ann2.59NL.mrna.fna.gz.fai +f1797ee0ad55c53ad8635955f92462cf ./vigun.TZ30.gnm1.ann2.59NL.cds.fna.gz +c852b4e1f2b0b7850e9e897e35e0ab6b ./vigun.TZ30.gnm1.ann2.59NL.cds_primary.fna.gz.fai +7fd7e2224d7e3616319d154f6022c9a1 ./vigun.TZ30.gnm1.ann2.59NL.mrna_primary.fna.gz.fai +cf4349bb3f08695a41bc55ecf99444b0 ./vigun.TZ30.gnm1.ann2.59NL.cds_primary.fna.gz +cf36bea133e65bf1cd7aebbcf0a16b16 ./vigun.TZ30.gnm1.ann2.59NL.gene_models_main.gff3.gz +44869633f4bf44a1a3152165b4ceef5c ./vigun.TZ30.gnm1.ann2.59NL.cds.fna.gz.gzi +a56a7e2166c8a4e932b3f581b1641c41 ./README.TZ30.gnm1.ann2.59NL.yml +dfa4aa2d08bf5f8ad706b83907e8dca5 ./vigun.TZ30.gnm1.ann2.59NL.protein.faa.gz +cff481666f3347b9ae739026a85d5bb8 ./vigun.TZ30.gnm1.ann2.59NL.protein_primary.faa.gz.fai +89b703ab54c28356fd5cf0ffd54dbc0a ./vigun.TZ30.gnm1.ann2.59NL.mrna_primary.fna.gz +eae0ce7f10719c3df1f1e919202270fc ./BUSCO/vigun.TZ30.gnm1.ann2.59NL.busco.fabales_odb10.short_summary.json +3a5be910c91109ff5871bcd28311df6b ./BUSCO/vigun.TZ30.gnm1.ann2.59NL.busco.fabales_odb10.short_summary.txt +e43e6eb0801eba40095311bdd072d2e6 ./BUSCO/vigun.TZ30.gnm1.ann2.59NL.busco.fabales_odb10.full_table.tsv.gz +73da70f7d9dcb28388b99a331b327b73 ./vigun.TZ30.gnm1.ann2.59NL.protein_primary.faa.gz.gzi +00737cb72cba245bc3481f68f67ac17c ./vigun.TZ30.gnm1.ann2.59NL.gene_models_main.gff3.gz.tbi +de56908bc1123fcaf87aedba44b2c652 ./vigun.TZ30.gnm1.ann2.59NL.cds.fna.gz.fai +3db5e631e147587ef2ab2765b10f903e ./vigun.TZ30.gnm1.ann2.59NL.legfed_v1_0.M65K.gfa.tsv.gz +017188d394547d42f429f4268f3eaae3 ./MANIFEST.TZ30.gnm1.ann2.59NL.yml +c5a8b6866c1db6f62efa8ee705ecb85e ./vigun.TZ30.gnm1.ann2.59NL.gene_models_main.bed.gz.tbi +129ce47bc7d91e4bb01b795b39453c82 ./vigun.TZ30.gnm1.ann2.59NL.mrna_primary.fna.gz.gzi +184dc6792bba72df0dbaf26fe1475800 ./vigun.TZ30.gnm1.ann2.59NL.gene_models_main.bed.gz +722906af3690bd096baa1bdc834c6a4d ./vigun.TZ30.gnm1.ann2.59NL.cds_primary.fna.gz.gzi +db8323a6e304fa94374399d54ddbdbb2 ./vigun.TZ30.gnm1.ann2.59NL.protein_primary.faa.gz +d273033e45d420f703d9d5da064c2bd8 ./vigun.TZ30.gnm1.ann2.59NL.mrna.fna.gz.gzi +b827cd8ae4d3e55f14ad227e9319295e ./vigun.TZ30.gnm1.ann2.59NL.protein.faa.gz.gzi +688bc6a5fbceb6088141dd9d6fe06bae ./vigun.TZ30.gnm1.ann2.59NL.mrna.fna.gz diff --git a/Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/MANIFEST.TZ30.gnm1.ann2.59NL.yml b/Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/MANIFEST.TZ30.gnm1.ann2.59NL.yml index 567182f5..c7dbf9ad 100644 --- a/Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/MANIFEST.TZ30.gnm1.ann2.59NL.yml +++ b/Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/MANIFEST.TZ30.gnm1.ann2.59NL.yml @@ -12,6 +12,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: vigun.TZ30.gnm1.ann2.59NL.legfed_v1_0.M65K.gfa.tsv.gz description: gene family assignments - name: vigun.TZ30.gnm1.ann2.59NL.mrna_primary.fna.gz diff --git a/Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/CHECKSUM.UCR779.gnm1.ann1.VF6G.md5 b/Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/CHECKSUM.UCR779.gnm1.ann1.VF6G.md5 index 12826472..47a760ef 100644 --- a/Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/CHECKSUM.UCR779.gnm1.ann1.VF6G.md5 +++ b/Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/CHECKSUM.UCR779.gnm1.ann1.VF6G.md5 @@ -1,25 +1,29 @@ -621c4b274d1463f999c238998dd78fd1 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/CHANGES.UCR779.gnm1.ann1.VF6G.txt -29af7e4399b9a75f3986b020bcd616e9 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/README.UCR779.gnm1.ann1.VF6G.yml -feec53c950647657643f45709b18e21d Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.cds_primary.fna.gz -418a5dc6c168cd5087415a4571b05c8e Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.cds_primary.fna.gz.fai -94e55f1ea7a45801212043592331d8fb Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.cds_primary.fna.gz.gzi -328bdd4e617424b7e498a09f4ccf3e25 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.cds.fna.gz -3a2243a8841fa7ec2891595b7b4e9731 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.cds.fna.gz.fai -a163a19c345b4fd9397e8676ae00d467 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.cds.fna.gz.gzi -c9aba3148378fb80f7f47ce475776419 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.bed.gz -84da12b122fc95b9f569b23efb271943 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.bed.gz.tbi -fb532fec43fdc543d190d9ba7b247d9e Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.gff3.gz -f4c5b5a073258a31a4eae003d83ab284 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.gff3.gz.tbi -2a60006726693b389e7225545aa7f55d Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.legfed_v1_0.M65K.gfa.tsv.gz -e1166a0bda966a4909caa84760425b70 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.mrna_primary.fna.gz -e657e4f0abf0345394a63b32d7c41cfe Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.mrna_primary.fna.gz.fai -c3c4dcebf308692ea88b6e6e6f7d63f3 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.mrna_primary.fna.gz.gzi -1142adb9b8dd3b2c6787d75d6c424960 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.mrna.fna.gz -69e5a30681b14c86503af8d07bc73339 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.mrna.fna.gz.fai -1cf569dcbdb240bb03f1eca1c09d7722 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.mrna.fna.gz.gzi -fb4339b55bc31e48800b2dfaf0d50f07 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.protein_primary.faa.gz -4d39a059d5691d825cac93cdef1f40db Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.protein_primary.faa.gz.fai -f1c3222b9a003899c5615821de97c889 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.protein_primary.faa.gz.gzi -e7191fa7885802adf2bbcc3e565e0e87 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.protein.faa.gz -1724f778faae26d469ab158c6e91d2b0 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.protein.faa.gz.fai -d647448cc163bb94b44f333d88994538 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.protein.faa.gz.gzi +a163a19c345b4fd9397e8676ae00d467 ./vigun.UCR779.gnm1.ann1.VF6G.cds.fna.gz.gzi +e7191fa7885802adf2bbcc3e565e0e87 ./vigun.UCR779.gnm1.ann1.VF6G.protein.faa.gz +418a5dc6c168cd5087415a4571b05c8e ./vigun.UCR779.gnm1.ann1.VF6G.cds_primary.fna.gz.fai +69e5a30681b14c86503af8d07bc73339 ./vigun.UCR779.gnm1.ann1.VF6G.mrna.fna.gz.fai +1724f778faae26d469ab158c6e91d2b0 ./vigun.UCR779.gnm1.ann1.VF6G.protein.faa.gz.fai +e1166a0bda966a4909caa84760425b70 ./vigun.UCR779.gnm1.ann1.VF6G.mrna_primary.fna.gz +fb532fec43fdc543d190d9ba7b247d9e ./vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.gff3.gz +4d39a059d5691d825cac93cdef1f40db ./vigun.UCR779.gnm1.ann1.VF6G.protein_primary.faa.gz.fai +328bdd4e617424b7e498a09f4ccf3e25 ./vigun.UCR779.gnm1.ann1.VF6G.cds.fna.gz +e657e4f0abf0345394a63b32d7c41cfe ./vigun.UCR779.gnm1.ann1.VF6G.mrna_primary.fna.gz.fai +f4c5b5a073258a31a4eae003d83ab284 ./vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.gff3.gz.tbi +feec53c950647657643f45709b18e21d ./vigun.UCR779.gnm1.ann1.VF6G.cds_primary.fna.gz +16a8d3694229c4dd81769359cfbfda8e ./BUSCO/vigun.UCR779.gnm1.ann1.VF6G.busco.fabales_odb10.full_table.tsv.gz +4a3bac36cf3cc4b84e7fc14e71332416 ./BUSCO/vigun.UCR779.gnm1.ann1.VF6G.busco.fabales_odb10.short_summary.txt +3c396e0a3ceead89546d6fc401bebebe ./BUSCO/vigun.UCR779.gnm1.ann1.VF6G.busco.fabales_odb10.short_summary.json +621c4b274d1463f999c238998dd78fd1 ./CHANGES.UCR779.gnm1.ann1.VF6G.txt +c9aba3148378fb80f7f47ce475776419 ./vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.bed.gz +c3c4dcebf308692ea88b6e6e6f7d63f3 ./vigun.UCR779.gnm1.ann1.VF6G.mrna_primary.fna.gz.gzi +84da12b122fc95b9f569b23efb271943 ./vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.bed.gz.tbi +f1c3222b9a003899c5615821de97c889 ./vigun.UCR779.gnm1.ann1.VF6G.protein_primary.faa.gz.gzi +2a60006726693b389e7225545aa7f55d ./vigun.UCR779.gnm1.ann1.VF6G.legfed_v1_0.M65K.gfa.tsv.gz +1142adb9b8dd3b2c6787d75d6c424960 ./vigun.UCR779.gnm1.ann1.VF6G.mrna.fna.gz +1cf569dcbdb240bb03f1eca1c09d7722 ./vigun.UCR779.gnm1.ann1.VF6G.mrna.fna.gz.gzi +94e55f1ea7a45801212043592331d8fb ./vigun.UCR779.gnm1.ann1.VF6G.cds_primary.fna.gz.gzi +fb4339b55bc31e48800b2dfaf0d50f07 ./vigun.UCR779.gnm1.ann1.VF6G.protein_primary.faa.gz +d647448cc163bb94b44f333d88994538 ./vigun.UCR779.gnm1.ann1.VF6G.protein.faa.gz.gzi +29af7e4399b9a75f3986b020bcd616e9 ./README.UCR779.gnm1.ann1.VF6G.yml +0e9bc187b7f4ad2fe9287a5ccf1d6c2d ./MANIFEST.UCR779.gnm1.ann1.VF6G.yml +3a2243a8841fa7ec2891595b7b4e9731 ./vigun.UCR779.gnm1.ann1.VF6G.cds.fna.gz.fai diff --git a/Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/MANIFEST.UCR779.gnm1.ann1.VF6G.yml b/Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/MANIFEST.UCR779.gnm1.ann1.VF6G.yml index 99e0459a..5fc052fa 100644 --- a/Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/MANIFEST.UCR779.gnm1.ann1.VF6G.yml +++ b/Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/MANIFEST.UCR779.gnm1.ann1.VF6G.yml @@ -12,6 +12,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: vigun.UCR779.gnm1.ann1.VF6G.legfed_v1_0.M65K.gfa.tsv.gz description: gene family assignments - name: vigun.UCR779.gnm1.ann1.VF6G.mrna_primary.fna.gz diff --git a/Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/CHECKSUM.Xiabao_II.gnm1.ann1.4JFL.md5 b/Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/CHECKSUM.Xiabao_II.gnm1.ann1.4JFL.md5 index 4065df96..c64235a6 100644 --- a/Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/CHECKSUM.Xiabao_II.gnm1.ann1.4JFL.md5 +++ b/Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/CHECKSUM.Xiabao_II.gnm1.ann1.4JFL.md5 @@ -1,16 +1,20 @@ -e813459cb2f564755d803fe34da77013 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/CHANGES.Xiabao_II.gnm1.ann1.4JFL.txt -76ecfb5efcde7c45a233298c8ed1b902 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/README.Xiabao_II.gnm1.ann1.4JFL.yml -effe85ffed90dda6765f3589f82001a5 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.cds.fna.gz -8aeba40bd19e6bd4d8591e2642865d32 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.cds.fna.gz.fai -0d440eaf3387184d60bc86276cbb6cdf Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.cds.fna.gz.gzi -82352f33a34fe8003f375e2b76e38005 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.gene_models_main.bed.gz -ddeab862cee64dda9d55f5aa15f4c175 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.gene_models_main.bed.gz.tbi -574aeee79605e903e0c4a448e138afa9 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.gene_models_main.gff3.gz -8251a76cc6cec170df6da2b51d5b94c4 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.gene_models_main.gff3.gz.tbi -df530d4cbdfa8eb16d9d610f65fd9e06 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.legfed_v1_0.M65K.gfa.tsv.gz -2a2392620c81ac0d2fa447da8ff21d87 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.mrna.fna.gz -d9e26cdb15e10edb40d740657818b6ac Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.mrna.fna.gz.fai -7ef476af1f2f14b345bba2e2ed3238f3 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.mrna.fna.gz.gzi -524c6433f7c0cd7a7a83b2a6ff1b0b9c Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.protein.faa.gz -62acd8088264adb6216ed874b0d3dfa9 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.protein.faa.gz.fai -50ae3b8cd61b4d147a3d5458247ac757 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.protein.faa.gz.gzi +8251a76cc6cec170df6da2b51d5b94c4 ./vigun.Xiabao_II.gnm1.ann1.4JFL.gene_models_main.gff3.gz.tbi +62acd8088264adb6216ed874b0d3dfa9 ./vigun.Xiabao_II.gnm1.ann1.4JFL.protein.faa.gz.fai +82352f33a34fe8003f375e2b76e38005 ./vigun.Xiabao_II.gnm1.ann1.4JFL.gene_models_main.bed.gz +effe85ffed90dda6765f3589f82001a5 ./vigun.Xiabao_II.gnm1.ann1.4JFL.cds.fna.gz +0d440eaf3387184d60bc86276cbb6cdf ./vigun.Xiabao_II.gnm1.ann1.4JFL.cds.fna.gz.gzi +524c6433f7c0cd7a7a83b2a6ff1b0b9c ./vigun.Xiabao_II.gnm1.ann1.4JFL.protein.faa.gz +7ef476af1f2f14b345bba2e2ed3238f3 ./vigun.Xiabao_II.gnm1.ann1.4JFL.mrna.fna.gz.gzi +d9e26cdb15e10edb40d740657818b6ac ./vigun.Xiabao_II.gnm1.ann1.4JFL.mrna.fna.gz.fai +f590188e08650d31f9f07abc80406a3f ./MANIFEST.Xiabao_II.gnm1.ann1.4JFL.yml +8aeba40bd19e6bd4d8591e2642865d32 ./vigun.Xiabao_II.gnm1.ann1.4JFL.cds.fna.gz.fai +257cf2a51943466afbed8cc2281d6a25 ./BUSCO/vigun.Xiabao_II.gnm1.ann1.4JFL.busco.fabales_odb10.short_summary.txt +aa666f97a5c932a12860b1b028d95667 ./BUSCO/vigun.Xiabao_II.gnm1.ann1.4JFL.busco.fabales_odb10.full_table.tsv.gz +3378e8c2e673eb94b3148978bfbd6826 ./BUSCO/vigun.Xiabao_II.gnm1.ann1.4JFL.busco.fabales_odb10.short_summary.json +2a2392620c81ac0d2fa447da8ff21d87 ./vigun.Xiabao_II.gnm1.ann1.4JFL.mrna.fna.gz +76ecfb5efcde7c45a233298c8ed1b902 ./README.Xiabao_II.gnm1.ann1.4JFL.yml +e813459cb2f564755d803fe34da77013 ./CHANGES.Xiabao_II.gnm1.ann1.4JFL.txt +ddeab862cee64dda9d55f5aa15f4c175 ./vigun.Xiabao_II.gnm1.ann1.4JFL.gene_models_main.bed.gz.tbi +df530d4cbdfa8eb16d9d610f65fd9e06 ./vigun.Xiabao_II.gnm1.ann1.4JFL.legfed_v1_0.M65K.gfa.tsv.gz +50ae3b8cd61b4d147a3d5458247ac757 ./vigun.Xiabao_II.gnm1.ann1.4JFL.protein.faa.gz.gzi +574aeee79605e903e0c4a448e138afa9 ./vigun.Xiabao_II.gnm1.ann1.4JFL.gene_models_main.gff3.gz diff --git a/Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/MANIFEST.Xiabao_II.gnm1.ann1.4JFL.yml b/Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/MANIFEST.Xiabao_II.gnm1.ann1.4JFL.yml index e59cf3b5..f06b53aa 100644 --- a/Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/MANIFEST.Xiabao_II.gnm1.ann1.4JFL.yml +++ b/Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/MANIFEST.Xiabao_II.gnm1.ann1.4JFL.yml @@ -10,6 +10,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: vigun.Xiabao_II.gnm1.ann1.4JFL.legfed_v1_0.M65K.gfa.tsv.gz description: gene family assignments - name: vigun.Xiabao_II.gnm1.ann1.4JFL.mrna.fna.gz diff --git a/Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/CHECKSUM.ZN016.gnm1.ann2.C7YV.md5 b/Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/CHECKSUM.ZN016.gnm1.ann2.C7YV.md5 index 7081cc24..3978923e 100644 --- a/Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/CHECKSUM.ZN016.gnm1.ann2.C7YV.md5 +++ b/Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/CHECKSUM.ZN016.gnm1.ann2.C7YV.md5 @@ -1,25 +1,29 @@ -621c4b274d1463f999c238998dd78fd1 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/CHANGES.ZN016.gnm1.ann2.C7YV.txt -991865da49d18edfcefeb1dd2cb701e1 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/README.ZN016.gnm1.ann2.C7YV.yml -e2184e59a4df23ae00f5fdb9f40ee9a8 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.cds_primary.fna.gz -e059d1366cbda18703ef2b444c789309 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.cds_primary.fna.gz.fai -adb897f31e72ba970f2d12b5e035d53b Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.cds_primary.fna.gz.gzi -2247d765f1c479a8769a578a139d0ede Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.cds.fna.gz -5dca4d002aa68f2db4b484abaa41b7da Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.cds.fna.gz.fai -c31b19f0f94c604d33d7dbff8e6f8e29 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.cds.fna.gz.gzi -cf898036b4f804f623589340d5cab508 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.gene_models_main.bed.gz -67eb3a0c51b13a38d7290b26ab181c55 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.gene_models_main.bed.gz.tbi -f16ddfcbc05d04f24e34e816b9b46e89 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.gene_models_main.gff3.gz -c554b3c725afc6ed30bac0c581dabf3b Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.gene_models_main.gff3.gz.tbi -d0b96a337f1004275f83c24394de6b91 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.legfed_v1_0.M65K.gfa.tsv.gz -55a6f90c066a3f6c37f5c3b3365a7514 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.mrna_primary.fna.gz -518bee549e1112b50be7be5fac613e64 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.mrna_primary.fna.gz.fai -a969056aeb2525b8612ec686704a87bc Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.mrna_primary.fna.gz.gzi -31e22180faa3f907e4b85c30d165cbf2 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.mrna.fna.gz -de592cfb4984c8454820d931b4212e6d Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.mrna.fna.gz.fai -0a75e8a64606fe64b5557d1868765f24 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.mrna.fna.gz.gzi -732ac73dca0b24a5b60216a99661e188 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.protein_primary.faa.gz -e3a8fe2c65068631ce045ed7c1582da1 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.protein_primary.faa.gz.fai -ca27666a47fc06bfe8b43b852905ba54 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.protein_primary.faa.gz.gzi -86d4f8a4fc9c5f52993243e159fb4110 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.protein.faa.gz -a285f1732b1a4dd54af3f80e42afab91 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.protein.faa.gz.fai -b35c576fb2c8205398a7832c6f2ea393 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.protein.faa.gz.gzi +732ac73dca0b24a5b60216a99661e188 ./vigun.ZN016.gnm1.ann2.C7YV.protein_primary.faa.gz +de592cfb4984c8454820d931b4212e6d ./vigun.ZN016.gnm1.ann2.C7YV.mrna.fna.gz.fai +adb897f31e72ba970f2d12b5e035d53b ./vigun.ZN016.gnm1.ann2.C7YV.cds_primary.fna.gz.gzi +31e22180faa3f907e4b85c30d165cbf2 ./vigun.ZN016.gnm1.ann2.C7YV.mrna.fna.gz +518bee549e1112b50be7be5fac613e64 ./vigun.ZN016.gnm1.ann2.C7YV.mrna_primary.fna.gz.fai +a285f1732b1a4dd54af3f80e42afab91 ./vigun.ZN016.gnm1.ann2.C7YV.protein.faa.gz.fai +171883aa1f0f9c3166e199be60fb8afc ./MANIFEST.ZN016.gnm1.ann2.C7YV.yml +e3a8fe2c65068631ce045ed7c1582da1 ./vigun.ZN016.gnm1.ann2.C7YV.protein_primary.faa.gz.fai +55a6f90c066a3f6c37f5c3b3365a7514 ./vigun.ZN016.gnm1.ann2.C7YV.mrna_primary.fna.gz +2247d765f1c479a8769a578a139d0ede ./vigun.ZN016.gnm1.ann2.C7YV.cds.fna.gz +c31b19f0f94c604d33d7dbff8e6f8e29 ./vigun.ZN016.gnm1.ann2.C7YV.cds.fna.gz.gzi +991865da49d18edfcefeb1dd2cb701e1 ./README.ZN016.gnm1.ann2.C7YV.yml +86d4f8a4fc9c5f52993243e159fb4110 ./vigun.ZN016.gnm1.ann2.C7YV.protein.faa.gz +c554b3c725afc6ed30bac0c581dabf3b ./vigun.ZN016.gnm1.ann2.C7YV.gene_models_main.gff3.gz.tbi +529234c5a4b97f4c2dcd508ac4f454df ./BUSCO/vigun.ZN016.gnm1.ann2.C7YV.busco.fabales_odb10.short_summary.json +92655c9f8bce14d358d4ebfd93cb4f65 ./BUSCO/vigun.ZN016.gnm1.ann2.C7YV.busco.fabales_odb10.short_summary.txt +d95b9431e0c07486e06ee8a4bc8eac15 ./BUSCO/vigun.ZN016.gnm1.ann2.C7YV.busco.fabales_odb10.full_table.tsv.gz +e2184e59a4df23ae00f5fdb9f40ee9a8 ./vigun.ZN016.gnm1.ann2.C7YV.cds_primary.fna.gz +f16ddfcbc05d04f24e34e816b9b46e89 ./vigun.ZN016.gnm1.ann2.C7YV.gene_models_main.gff3.gz +67eb3a0c51b13a38d7290b26ab181c55 ./vigun.ZN016.gnm1.ann2.C7YV.gene_models_main.bed.gz.tbi +d0b96a337f1004275f83c24394de6b91 ./vigun.ZN016.gnm1.ann2.C7YV.legfed_v1_0.M65K.gfa.tsv.gz +5dca4d002aa68f2db4b484abaa41b7da ./vigun.ZN016.gnm1.ann2.C7YV.cds.fna.gz.fai +ca27666a47fc06bfe8b43b852905ba54 ./vigun.ZN016.gnm1.ann2.C7YV.protein_primary.faa.gz.gzi +b35c576fb2c8205398a7832c6f2ea393 ./vigun.ZN016.gnm1.ann2.C7YV.protein.faa.gz.gzi +621c4b274d1463f999c238998dd78fd1 ./CHANGES.ZN016.gnm1.ann2.C7YV.txt +a969056aeb2525b8612ec686704a87bc ./vigun.ZN016.gnm1.ann2.C7YV.mrna_primary.fna.gz.gzi +cf898036b4f804f623589340d5cab508 ./vigun.ZN016.gnm1.ann2.C7YV.gene_models_main.bed.gz +0a75e8a64606fe64b5557d1868765f24 ./vigun.ZN016.gnm1.ann2.C7YV.mrna.fna.gz.gzi +e059d1366cbda18703ef2b444c789309 ./vigun.ZN016.gnm1.ann2.C7YV.cds_primary.fna.gz.fai diff --git a/Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/MANIFEST.ZN016.gnm1.ann2.C7YV.yml b/Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/MANIFEST.ZN016.gnm1.ann2.C7YV.yml index 678fa875..8f0948de 100644 --- a/Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/MANIFEST.ZN016.gnm1.ann2.C7YV.yml +++ b/Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/MANIFEST.ZN016.gnm1.ann2.C7YV.yml @@ -12,6 +12,7 @@ description: Gene models - main applications: - mines + - jbrowse-index - name: vigun.ZN016.gnm1.ann2.C7YV.legfed_v1_0.M65K.gfa.tsv.gz description: gene family assignments - name: vigun.ZN016.gnm1.ann2.C7YV.mrna_primary.fna.gz