From 29ee2d2d610d5e10c89a9c1542df73e115fc129d Mon Sep 17 00:00:00 2001 From: User Shokin Date: Mon, 31 Jul 2023 09:29:30 -0500 Subject: [PATCH 01/57] Removed empty and blank fields. IT IS ANNOYING THAT I HAVE TO DO THIS. --- .../README.ISC453364.gnm3.GWXB.yml | 15 --------------- 1 file changed, 15 deletions(-) diff --git a/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/README.ISC453364.gnm3.GWXB.yml b/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/README.ISC453364.gnm3.GWXB.yml index 7c5fb5cc..87361bd8 100644 --- a/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/README.ISC453364.gnm3.GWXB.yml +++ b/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/README.ISC453364.gnm3.GWXB.yml @@ -18,28 +18,14 @@ genotype: description: "This release is from a tree on the Iowa State University campus, registered as accession ISC453364. The resulting genome assembly was resolved into two haplotype assemblies. This particular assembly has been designated as haplotype 1. For full description of assembly methods and characteristics, see the Phytozome description at the URL above." -bioproject: - -sraproject: - -dataset_doi: - -genbank_accession: - original_file_creation_date: "2023-03-08" local_file_creation_date: "2023-04-11" dataset_release_date: "2023-04-11" -publication_doi: "" - -publication_title: "" - contributors: Steven Cannon, Jim Leebens-Mack, Jacob Stai, Jeremy Schmutz -citation: "" - data_curators: Steven Cannon public_access_level: public, restricted @@ -47,4 +33,3 @@ public_access_level: public, restricted license: Open, with usage agreement keywords: redbud, Cercis canadensis - From b9c4e9a4b4ca0c5d4f7617071e58ae44a302452e Mon Sep 17 00:00:00 2001 From: Sam Hokin Date: Mon, 31 Jul 2023 11:12:16 -0600 Subject: [PATCH 02/57] Added chromosome and supercontig prefixes. --- .../ISC453364.gnm3.GWXB/README.ISC453364.gnm3.GWXB.yml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/README.ISC453364.gnm3.GWXB.yml b/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/README.ISC453364.gnm3.GWXB.yml index 87361bd8..0f115c48 100644 --- a/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/README.ISC453364.gnm3.GWXB.yml +++ b/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/README.ISC453364.gnm3.GWXB.yml @@ -18,6 +18,10 @@ genotype: description: "This release is from a tree on the Iowa State University campus, registered as accession ISC453364. The resulting genome assembly was resolved into two haplotype assemblies. This particular assembly has been designated as haplotype 1. For full description of assembly methods and characteristics, see the Phytozome description at the URL above." +chromosome_prefix: Chr + +supercontig_prefix: scaffold + original_file_creation_date: "2023-03-08" local_file_creation_date: "2023-04-11" From af869d6c88f5de7317accbf82758a0555d73adfc Mon Sep 17 00:00:00 2001 From: Sam Hokin Date: Mon, 31 Jul 2023 11:14:33 -0600 Subject: [PATCH 03/57] Removed null and empty string entries. ANNOYING!!!! --- ...M3R.busco.fabales_odb10.short_summary.json | 47 -------------- ...F73.busco.fabales_odb10.short_summary.json | 62 ------------------ ...Q4M.busco.fabales_odb10.short_summary.json | 62 ------------------ ...xSM.busco.fabales_odb10.short_summary.json | 48 -------------- ...WBf.busco.fabales_odb10.short_summary.json | 63 ------------------- ...7QH.busco.fabales_odb10.short_summary.json | 63 ------------------- ...QM7.busco.fabales_odb10.short_summary.json | 47 -------------- ...CJH.busco.fabales_odb10.short_summary.json | 48 -------------- ...K0L.busco.fabales_odb10.short_summary.json | 48 -------------- ...VFB.busco.fabales_odb10.short_summary.json | 47 -------------- ...X5Y.busco.fabales_odb10.short_summary.json | 63 ------------------- ...4VP.busco.fabales_odb10.short_summary.json | 62 ------------------ ...YV3.busco.fabales_odb10.short_summary.json | 63 ------------------- ...5K5.busco.fabales_odb10.short_summary.json | 63 ------------------- 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Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/BUSCO/vicfa.Hedin2.gnm1.ann1.PTNK.busco.fabales_odb10.short_summary.json delete mode 100644 Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X/BUSCO/vicfa.Tiffany.gnm1.ann1.Y54X.busco.fabales_odb10.short_summary.json delete mode 100644 Vicia/faba/genomes/Hedin2.gnm1.06GS/BUSCO/vicfa.Hedin2.gnm1.06GS.busco.fabales_odb10.short_summary.json delete mode 100644 Vicia/faba/genomes/Tiffany.gnm1.M2F3/BUSCO/vicfa.Tiffany.gnm1.M2F3.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/BUSCO/vigan.Gyeongwon.gnm3.ann1.3Nz5.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/BUSCO/vigan.Shumari.gnm1.ann1.8BRS.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/angularis/genomes/Gyeongwon.gnm3.JyYC/BUSCO/vigan.Gyeongwon.gnm3.JyYC.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/angularis/genomes/Shumari.gnm1.V0CS/BUSCO/vigan.Shumari.gnm1.V0CS.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/BUSCO/vigra.VC1973A.gnm6.ann1.M1Qs.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/BUSCO/vigra.VC1973A.gnm7.ann1.RWBG.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/radiata/genomes/VC1973A.gnm6.3nL8/BUSCO/vigra.VC1973A.gnm6.3nL8.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/radiata/genomes/VC1973A.gnm7.SB53/BUSCO/vigra.VC1973A.gnm7.SB53.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/BUSCO/vigun.CB5-2.gnm1.ann1.0GKC.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/BUSCO/vigun.IT97K-499-35.gnm1.ann1.zb5D.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/BUSCO/vigun.IT97K-499-35.gnm1.ann2.FD7K.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/BUSCO/vigun.Sanzi.gnm1.ann1.HFH8.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/BUSCO/vigun.Suvita2.gnm1.ann1.1PF6.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/BUSCO/vigun.TZ30.gnm1.ann2.59NL.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/BUSCO/vigun.UCR779.gnm1.ann1.VF6G.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/BUSCO/vigun.Xiabao_II.gnm1.ann1.4JFL.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/BUSCO/vigun.ZN016.gnm1.ann2.C7YV.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/genomes/CB5-2.gnm1.WDTB/BUSCO/vigun.CB5-2.gnm1.WDTB.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/genomes/IT97K-499-35.gnm1.QnBW/BUSCO/vigun.IT97K-499-35.gnm1.QnBW.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/genomes/Sanzi.gnm1.YNCM/BUSCO/vigun.Sanzi.gnm1.YNCM.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/genomes/Suvita2.gnm1.5QLL/BUSCO/vigun.Suvita2.gnm1.5QLL.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/genomes/TZ30.gnm1.TX9W/BUSCO/vigun.TZ30.gnm1.TX9W.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/genomes/UCR779.gnm1.M7KZ/BUSCO/vigun.UCR779.gnm1.M7KZ.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/genomes/Xiabao_II.gnm1.WDBP/BUSCO/vigun.Xiabao_II.gnm1.WDBP.busco.fabales_odb10.short_summary.json delete mode 100644 Vigna/unguiculata/genomes/ZN016.gnm1.997F/BUSCO/vigun.ZN016.gnm1.997F.busco.fabales_odb10.short_summary.json diff --git a/Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/BUSCO/aesev.CIAT22838.gnm1.ann1.ZM3R.busco.fabales_odb10.short_summary.json b/Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/BUSCO/aesev.CIAT22838.gnm1.ann1.ZM3R.busco.fabales_odb10.short_summary.json deleted file mode 100644 index a42298a7..00000000 --- a/Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/BUSCO/aesev.CIAT22838.gnm1.ann1.ZM3R.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,47 +0,0 @@ -{ - "parameters": { - "out_path": "/busco_wd", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - 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a/Aeschynomene/evenia/genomes/CIAT22838.gnm1.XF73/BUSCO/aesev.CIAT22838.gnm1.XF73.busco.fabales_odb10.short_summary.json b/Aeschynomene/evenia/genomes/CIAT22838.gnm1.XF73/BUSCO/aesev.CIAT22838.gnm1.XF73.busco.fabales_odb10.short_summary.json deleted file mode 100644 index 7d8bce32..00000000 --- a/Aeschynomene/evenia/genomes/CIAT22838.gnm1.XF73/BUSCO/aesev.CIAT22838.gnm1.XF73.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,62 +0,0 @@ -{ - "parameters": { - "out_path": "/busco_wd", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - "batch_mode": "False", - "tar": "False", - "in": 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a/Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/BUSCO/araip.K30076.gnm1.ann1.J37m.busco.fabales_odb10.short_summary.json b/Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/BUSCO/araip.K30076.gnm1.ann1.J37m.busco.fabales_odb10.short_summary.json deleted file mode 100644 index 9b66566c..00000000 --- a/Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/BUSCO/araip.K30076.gnm1.ann1.J37m.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,48 +0,0 @@ -{ - "parameters": { - "out_path": "/home/adf", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - "batch_mode": "False", - "tar": "False", - "in": "/home/adf/araip.K30076.gnm1.ann1.J37m.protein.faa", 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a/Arachis/ipaensis/genomes/K30076.gnm2.1GWY/BUSCO/araip.K30076.gnm2.1GWY.busco.fabales_odb10.short_summary.json b/Arachis/ipaensis/genomes/K30076.gnm2.1GWY/BUSCO/araip.K30076.gnm2.1GWY.busco.fabales_odb10.short_summary.json deleted file mode 100644 index d28d78d3..00000000 --- a/Arachis/ipaensis/genomes/K30076.gnm2.1GWY/BUSCO/araip.K30076.gnm2.1GWY.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,63 +0,0 @@ -{ - "parameters": { - "out_path": "/home/adf", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - "batch_mode": "False", - "tar": "False", - "in": "/home/adf/araip.K30076.gnm2.1GWY.genome_main.fna", - "out": "BUSCO_genome_fabales_odb10", - 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a/Cajanus/cajan/genomes/ICPL87119.gnm1.SBGP/BUSCO/cajca.ICPL87119.gnm1.SBGP.busco.fabales_odb10.short_summary.json b/Cajanus/cajan/genomes/ICPL87119.gnm1.SBGP/BUSCO/cajca.ICPL87119.gnm1.SBGP.busco.fabales_odb10.short_summary.json deleted file mode 100644 index 0dc2c8dd..00000000 --- a/Cajanus/cajan/genomes/ICPL87119.gnm1.SBGP/BUSCO/cajca.ICPL87119.gnm1.SBGP.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,63 +0,0 @@ -{ - "parameters": { - "out_path": "/home/adf", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - "batch_mode": "False", - "tar": "False", - "in": "/home/adf/cajca.ICPL87119.gnm1.SBGP.genome_main.fna", - "out": 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"restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - "batch_mode": "False", - "tar": "False", - "in": "/busco_wd/run_busco.bash.yoFkxU/cerca.ISC453364.gnm3.ann1.3N1M.protein_primary.faa", - "out": "BUSCO_proteins_fabales_odb10", - "mode": "proteins", - "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", - "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", - "lineage_results_dir": "run_fabales_odb10", - "domain": "eukaryota" - }, - "lineage_dataset": { - "name": "fabales_odb10", - "creation_date": "2020-08-05", - "number_of_buscos": "5366", - "number_of_species": "10" - }, - "versions": { - "hmmsearch": 3.1, - "busco": "5.4.3" - }, - "results": { - "one_line_summary": "C:96.4%[S:92.2%,D:4.2%],F:0.3%,M:3.3%,n:5366", - "Complete": 96.4, - "Single copy": 92.2, - "Multi copy": 4.2, - "Fragmented": 0.3, - "Missing": 3.3, - "n_markers": 5366, - "domain": "eukaryota" - } -} \ No newline at end of file diff --git a/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/README.ISC453364.gnm3.ann1.3N1M.yml b/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/README.ISC453364.gnm3.ann1.3N1M.yml index f0773e4c..1689f76d 100644 --- a/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/README.ISC453364.gnm3.ann1.3N1M.yml +++ b/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/README.ISC453364.gnm3.ann1.3N1M.yml @@ -18,28 +18,14 @@ genotype: description: "Gene annotation resources. See full description at Phytozome/JGI repository (address above)." -bioproject: - -sraproject: - -dataset_doi: - -genbank_accession: - original_file_creation_date: "2023-03-08" local_file_creation_date: "2023-04-11" dataset_release_date: "2023-04-11" -publication_doi: "" - -publication_title: "" - contributors: Steven Cannon, Jim Leebens-Mack, Jacob Stai, Jeremy Schmutz -citation: - data_curators: Steven Cannon public_access_level: public, restricted @@ -47,4 +33,3 @@ public_access_level: public, restricted license: Open, with usage agreement keywords: redbud, Cercis canadensis - diff --git a/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/BUSCO/cerca.ISC453364.gnm3.GWXB.busco.fabales_odb10.short_summary.json b/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/BUSCO/cerca.ISC453364.gnm3.GWXB.busco.fabales_odb10.short_summary.json deleted file mode 100644 index 1d8c24ed..00000000 --- a/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/BUSCO/cerca.ISC453364.gnm3.GWXB.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,62 +0,0 @@ -{ - 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"Missing": 2.0, - "n_markers": 5366, - "domain": "eukaryota" - } -} \ No newline at end of file diff --git a/Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/BUSCO/glyma.Hwangkeum.gnm1.ann1.1G4F.busco.fabales_odb10.short_summary.json b/Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/BUSCO/glyma.Hwangkeum.gnm1.ann1.1G4F.busco.fabales_odb10.short_summary.json deleted file mode 100644 index f2ea8552..00000000 --- a/Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/BUSCO/glyma.Hwangkeum.gnm1.ann1.1G4F.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,47 +0,0 @@ -{ - "parameters": { - "out_path": "/busco_wd", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - 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"n_markers": 5366, - "domain": "eukaryota" - } -} \ No newline at end of file diff --git a/Glycine/max/annotations/Lee.gnm1.ann1.6NZV/BUSCO/glyma.Lee.gnm1.ann1.6NZV.busco.fabales_odb10.short_summary.json b/Glycine/max/annotations/Lee.gnm1.ann1.6NZV/BUSCO/glyma.Lee.gnm1.ann1.6NZV.busco.fabales_odb10.short_summary.json deleted file mode 100644 index cb271e41..00000000 --- a/Glycine/max/annotations/Lee.gnm1.ann1.6NZV/BUSCO/glyma.Lee.gnm1.ann1.6NZV.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,48 +0,0 @@ -{ - "parameters": { - "out_path": "/home/adf", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - "batch_mode": "False", - "tar": "False", - "in": "/home/adf/glyma.Lee.gnm1.ann1.6NZV.protein.faa", - 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"n_markers": 5366, - "domain": "eukaryota" - } -} \ No newline at end of file diff --git a/Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/BUSCO/glyma.ShiShengChangYe.gnm1.ann1.VLGS.busco.fabales_odb10.short_summary.json b/Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/BUSCO/glyma.ShiShengChangYe.gnm1.ann1.VLGS.busco.fabales_odb10.short_summary.json deleted file mode 100644 index 83976574..00000000 --- a/Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/BUSCO/glyma.ShiShengChangYe.gnm1.ann1.VLGS.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,48 +0,0 @@ -{ - "parameters": { - "out_path": "/home/adf", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - 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"n_markers": 5366, - "domain": "eukaryota" - } -} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/BUSCO/medtr.HM004.gnm1.ann1.2XTB.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/BUSCO/medtr.HM004.gnm1.ann1.2XTB.busco.fabales_odb10.short_summary.json deleted file mode 100644 index f4a2be82..00000000 --- a/Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/BUSCO/medtr.HM004.gnm1.ann1.2XTB.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,47 +0,0 @@ -{ - "parameters": { - "out_path": "/busco_wd", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - "batch_mode": "False", - 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"parameters": { - "out_path": "/busco_wd", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - "batch_mode": "False", - "tar": "False", - "in": "/busco_wd/run_busco.bash.BuK4ds/medtr.HM010.gnm1.ann1.WV9J.protein.faa", - "out": "BUSCO_proteins_fabales_odb10", - "mode": "proteins", - "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", - "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", - "lineage_results_dir": "run_fabales_odb10", - "domain": "eukaryota" - }, - "lineage_dataset": { - "name": "fabales_odb10", - "creation_date": "2020-08-05", - "number_of_buscos": "5366", - "number_of_species": "10" - }, - "versions": { - "hmmsearch": 3.1, - "busco": "5.4.3" - }, - "results": { - "one_line_summary": "C:98.9%[S:96.4%,D:2.5%],F:0.4%,M:0.7%,n:5366", - "Complete": 98.9, - "Single copy": 96.4, - "Multi copy": 2.5, - "Fragmented": 0.4, - "Missing": 0.7, - "n_markers": 5366, - "domain": "eukaryota" - } -} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/BUSCO/medtr.HM022.gnm1.ann1.6C8N.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/BUSCO/medtr.HM022.gnm1.ann1.6C8N.busco.fabales_odb10.short_summary.json deleted file mode 100644 index 83bdf800..00000000 --- a/Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/BUSCO/medtr.HM022.gnm1.ann1.6C8N.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,47 +0,0 @@ -{ - "parameters": { - "out_path": "/busco_wd", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - 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"parameters": { - "out_path": "/busco_wd", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - "batch_mode": "False", - "tar": "False", - "in": "/busco_wd/run_busco.bash.nCCiXg/medtr.HM023.gnm1.ann1.WZN8.protein.faa", - "out": "BUSCO_proteins_fabales_odb10", - "mode": "proteins", - "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", - "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", - "lineage_results_dir": "run_fabales_odb10", - "domain": "eukaryota" - }, - "lineage_dataset": { - "name": "fabales_odb10", - "creation_date": "2020-08-05", - "number_of_buscos": "5366", - "number_of_species": "10" - }, - "versions": { - "hmmsearch": 3.1, - "busco": "5.4.3" - }, - "results": { - "one_line_summary": "C:98.9%[S:96.3%,D:2.6%],F:0.5%,M:0.6%,n:5366", - "Complete": 98.9, - "Single copy": 96.3, - "Multi copy": 2.6, - "Fragmented": 0.5, - "Missing": 0.6, - "n_markers": 5366, - "domain": "eukaryota" - } -} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/BUSCO/medtr.HM034.gnm1.ann1.YR6S.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/BUSCO/medtr.HM034.gnm1.ann1.YR6S.busco.fabales_odb10.short_summary.json deleted file mode 100644 index 978ef0e4..00000000 --- a/Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/BUSCO/medtr.HM034.gnm1.ann1.YR6S.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,47 +0,0 @@ -{ - "parameters": { - "out_path": "/busco_wd", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - "batch_mode": "False", - "tar": "False", - "in": "/busco_wd/run_busco.bash.15TQNM/medtr.HM034.gnm1.ann1.YR6S.protein.faa", - "out": "BUSCO_proteins_fabales_odb10", - "mode": "proteins", - "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", - "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", - "lineage_results_dir": "run_fabales_odb10", - "domain": "eukaryota" - }, - "lineage_dataset": { - "name": "fabales_odb10", - "creation_date": "2020-08-05", - "number_of_buscos": "5366", - "number_of_species": "10" - }, - "versions": { - "hmmsearch": 3.1, - "busco": "5.4.3" - }, - "results": { - "one_line_summary": "C:98.7%[S:96.1%,D:2.6%],F:0.5%,M:0.8%,n:5366", - "Complete": 98.7, - "Single copy": 96.1, - "Multi copy": 2.6, - "Fragmented": 0.5, - "Missing": 0.8, - "n_markers": 5366, - "domain": "eukaryota" - } -} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/BUSCO/medtr.HM050.gnm1.ann1.GWRX.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/BUSCO/medtr.HM050.gnm1.ann1.GWRX.busco.fabales_odb10.short_summary.json deleted file mode 100644 index d5ebf246..00000000 --- a/Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/BUSCO/medtr.HM050.gnm1.ann1.GWRX.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,47 +0,0 @@ -{ - "parameters": { - "out_path": "/busco_wd", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - "batch_mode": "False", - "tar": "False", - "in": "/busco_wd/run_busco.bash.1q9AhE/medtr.HM050.gnm1.ann1.GWRX.protein.faa", - "out": "BUSCO_proteins_fabales_odb10", - "mode": "proteins", - "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", - "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", - "lineage_results_dir": "run_fabales_odb10", - "domain": "eukaryota" - }, - "lineage_dataset": { - "name": "fabales_odb10", - "creation_date": "2020-08-05", - "number_of_buscos": "5366", - "number_of_species": "10" - }, - "versions": { - "hmmsearch": 3.1, - "busco": "5.4.3" - }, - "results": { - "one_line_summary": "C:99.0%[S:96.5%,D:2.5%],F:0.4%,M:0.6%,n:5366", - "Complete": 99.0, - "Single copy": 96.5, - "Multi copy": 2.5, - "Fragmented": 0.4, - "Missing": 0.6, - "n_markers": 5366, - "domain": "eukaryota" - } -} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/BUSCO/medtr.HM056.gnm1.ann1.CHP6.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/BUSCO/medtr.HM056.gnm1.ann1.CHP6.busco.fabales_odb10.short_summary.json deleted file mode 100644 index 0e315ba8..00000000 --- a/Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/BUSCO/medtr.HM056.gnm1.ann1.CHP6.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,47 +0,0 @@ -{ - "parameters": { - "out_path": "/busco_wd", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - "batch_mode": "False", - "tar": "False", - "in": "/busco_wd/run_busco.bash.PoO2Xn/medtr.HM056.gnm1.ann1.CHP6.protein.faa", - "out": "BUSCO_proteins_fabales_odb10", - "mode": "proteins", - "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", - "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", - "lineage_results_dir": "run_fabales_odb10", - "domain": "eukaryota" - }, - "lineage_dataset": { - "name": "fabales_odb10", - "creation_date": "2020-08-05", - "number_of_buscos": "5366", - "number_of_species": "10" - }, - "versions": { - "hmmsearch": 3.1, - "busco": "5.4.3" - }, - "results": { - "one_line_summary": "C:98.7%[S:96.2%,D:2.5%],F:0.4%,M:0.9%,n:5366", - "Complete": 98.7, - "Single copy": 96.2, - "Multi copy": 2.5, - "Fragmented": 0.4, - "Missing": 0.9, - "n_markers": 5366, - "domain": "eukaryota" - } -} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/BUSCO/medtr.HM058.gnm1.ann1.LXPZ.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/BUSCO/medtr.HM058.gnm1.ann1.LXPZ.busco.fabales_odb10.short_summary.json deleted file mode 100644 index 0f927259..00000000 --- a/Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/BUSCO/medtr.HM058.gnm1.ann1.LXPZ.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,47 +0,0 @@ -{ - 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"busco": "5.4.3" - }, - "results": { - "one_line_summary": "C:98.3%[S:95.7%,D:2.6%],F:0.6%,M:1.1%,n:5366", - "Complete": 98.3, - "Single copy": 95.7, - "Multi copy": 2.6, - "Fragmented": 0.6, - "Missing": 1.1, - "n_markers": 5366, - "domain": "eukaryota" - } -} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/BUSCO/medtr.HM060.gnm1.ann1.H41P.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/BUSCO/medtr.HM060.gnm1.ann1.H41P.busco.fabales_odb10.short_summary.json deleted file mode 100644 index 7997c5f1..00000000 --- a/Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/BUSCO/medtr.HM060.gnm1.ann1.H41P.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,47 +0,0 @@ -{ - "parameters": { - "out_path": "/busco_wd", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - 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"parameters": { - "out_path": "/busco_wd", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - "batch_mode": "False", - "tar": "False", - "in": "/busco_wd/run_busco.bash.xTv8p9/medtr.HM324.gnm1.ann1.SQH2.protein.faa", - "out": "BUSCO_proteins_fabales_odb10", - "mode": "proteins", - "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", - "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", - "lineage_results_dir": "run_fabales_odb10", - "domain": "eukaryota" - }, - "lineage_dataset": { - "name": "fabales_odb10", - "creation_date": "2020-08-05", - "number_of_buscos": "5366", - "number_of_species": "10" - }, - "versions": { - "hmmsearch": 3.1, - "busco": "5.4.3" - }, - "results": { - "one_line_summary": "C:96.5%[S:93.9%,D:2.6%],F:1.6%,M:1.9%,n:5366", - "Complete": 96.5, - "Single copy": 93.9, - "Multi copy": 2.6, - "Fragmented": 1.6, - "Missing": 1.9, - "n_markers": 5366, - "domain": "eukaryota" - } -} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/BUSCO/medtr.R108.gnmHiC_1.ann1.Y8NH.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/BUSCO/medtr.R108.gnmHiC_1.ann1.Y8NH.busco.fabales_odb10.short_summary.json deleted file mode 100644 index 3f7e12cc..00000000 --- a/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/BUSCO/medtr.R108.gnmHiC_1.ann1.Y8NH.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,47 +0,0 @@ -{ - "parameters": { - "out_path": "/busco_wd", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - 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"domain": "eukaryota" - } -} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/BUSCO/medtr.R108_HM340.gnm1.ann1.85YW.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/BUSCO/medtr.R108_HM340.gnm1.ann1.85YW.busco.fabales_odb10.short_summary.json deleted file mode 100644 index 503b678f..00000000 --- a/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/BUSCO/medtr.R108_HM340.gnm1.ann1.85YW.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,47 +0,0 @@ -{ - "parameters": { - "out_path": "/busco_wd", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - 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}, - "lineage_dataset": { - "name": "fabales_odb10", - "creation_date": "2020-08-05", - "number_of_buscos": "5366", - "number_of_species": "10" - }, - "versions": { - "hmmsearch": 3.1, - "bbtools": "38.96", - "metaeuk": "5.34c21f2", - "busco": "5.4.3" - }, - "results": { - "one_line_summary": "C:97.9%[S:96.3%,D:1.6%],F:0.2%,M:1.9%,n:5366", - "Complete": 97.9, - "Single copy": 96.3, - "Multi copy": 1.6, - "Fragmented": 0.2, - "Missing": 1.9, - "n_markers": 5366, - "domain": "eukaryota", - "Number of scaffolds": "7032", - "Number of contigs": "30191", - "Total length": "451130807", - "Percent gaps": "0.502%", - "Scaffold N50": "37764243", - "Contigs N50": "42059" - } -} \ No newline at end of file From f55a1481d3d4abeb0ac73640a44cccc52258b1d8 Mon Sep 17 00:00:00 2001 From: Sam Hokin Date: Mon, 31 Jul 2023 11:20:05 -0600 Subject: [PATCH 04/57] Revert "Removed null and empty string entries. ANNOYING!!!!" 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a/Aeschynomene/evenia/genomes/CIAT22838.gnm1.XF73/BUSCO/aesev.CIAT22838.gnm1.XF73.busco.fabales_odb10.short_summary.json b/Aeschynomene/evenia/genomes/CIAT22838.gnm1.XF73/BUSCO/aesev.CIAT22838.gnm1.XF73.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..7d8bce32 --- /dev/null +++ b/Aeschynomene/evenia/genomes/CIAT22838.gnm1.XF73/BUSCO/aesev.CIAT22838.gnm1.XF73.busco.fabales_odb10.short_summary.json @@ -0,0 +1,62 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": 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"137542", + "Number of contigs": "172929", + "Total length": "605780537", + "Percent gaps": "5.685%", + "Scaffold N50": "516056", + "Contigs N50": "22480" + } +} \ No newline at end of file diff --git a/Cajanus/cajan/genomes/ICPL87119.gnm2.KL9M/BUSCO/cajca.ICPL87119.gnm2.KL9M.busco.fabales_odb10.short_summary.json b/Cajanus/cajan/genomes/ICPL87119.gnm2.KL9M/BUSCO/cajca.ICPL87119.gnm2.KL9M.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..0deb80e6 --- /dev/null +++ b/Cajanus/cajan/genomes/ICPL87119.gnm2.KL9M/BUSCO/cajca.ICPL87119.gnm2.KL9M.busco.fabales_odb10.short_summary.json @@ -0,0 +1,63 @@ +{ + "parameters": { + "out_path": "/home/adf", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/home/adf/cajca.ICPL87119.gnm2.KL9M.genome_main.fna", + "out": "BUSCO_genome_fabales_odb10", + "mode": "euk_genome_met", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "limit": "10", + "main_out": "/home/adf/BUSCO_genome_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota", + "max_intron": "90000", + "max_seq_len": "120000", + "metaeuk_parameters": "", + "metaeuk_rerun_parameters": "", + "contig_break": "10", + "scaffold_composition": "False", + "gene_predictor": "metaeuk" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "bbtools": "38.96", + "metaeuk": "5.34c21f2", + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:98.3%[S:96.3%,D:2.0%],F:0.4%,M:1.3%,n:5366", + "Complete": 98.3, + "Single copy": 96.3, + "Multi copy": 2.0, + "Fragmented": 0.4, + "Missing": 1.3, + "n_markers": 5366, + "domain": "eukaryota", + "Number of scaffolds": "35727", + "Number of contigs": "76499", + "Total length": "594802861", + "Percent gaps": "6.097%", + "Scaffold N50": "53895704", + "Contigs N50": "21835" + } +} \ No newline at end of file diff --git a/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/BUSCO/cerca.ISC453364.gnm3.ann1.3N1M.busco.fabales_odb10.short_summary.json b/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/BUSCO/cerca.ISC453364.gnm3.ann1.3N1M.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..3ee8298e --- /dev/null +++ b/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/BUSCO/cerca.ISC453364.gnm3.ann1.3N1M.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.yoFkxU/cerca.ISC453364.gnm3.ann1.3N1M.protein_primary.faa", + "out": "BUSCO_proteins_fabales_odb10", + "mode": "proteins", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:96.4%[S:92.2%,D:4.2%],F:0.3%,M:3.3%,n:5366", + "Complete": 96.4, + "Single copy": 92.2, + "Multi copy": 4.2, + "Fragmented": 0.3, + "Missing": 3.3, + "n_markers": 5366, + "domain": "eukaryota" + } +} \ No newline at end of file diff --git a/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/README.ISC453364.gnm3.ann1.3N1M.yml b/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/README.ISC453364.gnm3.ann1.3N1M.yml index 1689f76d..f0773e4c 100644 --- a/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/README.ISC453364.gnm3.ann1.3N1M.yml +++ b/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/README.ISC453364.gnm3.ann1.3N1M.yml @@ -18,14 +18,28 @@ genotype: description: "Gene annotation resources. See full description at Phytozome/JGI repository (address above)." +bioproject: + +sraproject: + +dataset_doi: + +genbank_accession: + original_file_creation_date: "2023-03-08" local_file_creation_date: "2023-04-11" dataset_release_date: "2023-04-11" +publication_doi: "" + +publication_title: "" + contributors: Steven Cannon, Jim Leebens-Mack, Jacob Stai, Jeremy Schmutz +citation: + data_curators: Steven Cannon public_access_level: public, restricted @@ -33,3 +47,4 @@ public_access_level: public, restricted license: Open, with usage agreement keywords: redbud, Cercis canadensis + diff --git a/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/BUSCO/cerca.ISC453364.gnm3.GWXB.busco.fabales_odb10.short_summary.json b/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/BUSCO/cerca.ISC453364.gnm3.GWXB.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..1d8c24ed --- /dev/null +++ b/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/BUSCO/cerca.ISC453364.gnm3.GWXB.busco.fabales_odb10.short_summary.json @@ -0,0 +1,62 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.KhpUzT/cerca.ISC453364.gnm3.GWXB.genome_main.fna", + "out": "BUSCO_genome_fabales_odb10", + "mode": "euk_genome_met", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_genome_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota", + "max_intron": "90000", + 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a/Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/BUSCO/chafa.MN87.gnm1.ann1.LWFM.busco.fabales_odb10.short_summary.json b/Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/BUSCO/chafa.MN87.gnm1.ann1.LWFM.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..a105be29 --- /dev/null +++ b/Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/BUSCO/chafa.MN87.gnm1.ann1.LWFM.busco.fabales_odb10.short_summary.json @@ -0,0 +1,48 @@ +{ + "parameters": { + "out_path": "/home/adf", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": 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newline at end of file diff --git a/Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/BUSCO/glyma.PI_548362.gnm1.ann1.LL84.busco.fabales_odb10.short_summary.json b/Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/BUSCO/glyma.PI_548362.gnm1.ann1.LL84.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..c7fa409c --- /dev/null +++ b/Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/BUSCO/glyma.PI_548362.gnm1.ann1.LL84.busco.fabales_odb10.short_summary.json @@ -0,0 +1,48 @@ +{ + "parameters": { + "out_path": "/home/adf", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": 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newline at end of file diff --git a/Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/BUSCO/glyma.WanDouNo_28.gnm1.ann1.NLYP.busco.fabales_odb10.short_summary.json b/Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/BUSCO/glyma.WanDouNo_28.gnm1.ann1.NLYP.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..1d48a21c --- /dev/null +++ b/Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/BUSCO/glyma.WanDouNo_28.gnm1.ann1.NLYP.busco.fabales_odb10.short_summary.json @@ -0,0 +1,48 @@ +{ + "parameters": { + "out_path": "/home/adf", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": 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a/Glycine/max/annotations/Wm82_IGA1008.gnm1.ann1.FGN6/BUSCO/glyma.Wm82_IGA1008.gnm1.ann1.FGN6.busco.fabales_odb10.short_summary.json b/Glycine/max/annotations/Wm82_IGA1008.gnm1.ann1.FGN6/BUSCO/glyma.Wm82_IGA1008.gnm1.ann1.FGN6.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..7b126b44 --- /dev/null +++ b/Glycine/max/annotations/Wm82_IGA1008.gnm1.ann1.FGN6/BUSCO/glyma.Wm82_IGA1008.gnm1.ann1.FGN6.busco.fabales_odb10.short_summary.json @@ -0,0 +1,48 @@ +{ + "parameters": { + "out_path": "/home/adf", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": 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"domain": "eukaryota" + } +} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/BUSCO/medtr.A17_HM341.gnm4.ann2.G3ZY.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/BUSCO/medtr.A17_HM341.gnm4.ann2.G3ZY.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..d913b693 --- /dev/null +++ b/Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/BUSCO/medtr.A17_HM341.gnm4.ann2.G3ZY.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + 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a/Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/BUSCO/medtr.HM004.gnm1.ann1.2XTB.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/BUSCO/medtr.HM004.gnm1.ann1.2XTB.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..f4a2be82 --- /dev/null +++ b/Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/BUSCO/medtr.HM004.gnm1.ann1.2XTB.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.Hx7vGk/medtr.HM004.gnm1.ann1.2XTB.protein.faa", + "out": "BUSCO_proteins_fabales_odb10", + "mode": "proteins", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:98.9%[S:96.4%,D:2.5%],F:0.5%,M:0.6%,n:5366", + "Complete": 98.9, + "Single copy": 96.4, + "Multi copy": 2.5, + "Fragmented": 0.5, + "Missing": 0.6, + "n_markers": 5366, + "domain": "eukaryota" + } +} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/BUSCO/medtr.HM010.gnm1.ann1.WV9J.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/BUSCO/medtr.HM010.gnm1.ann1.WV9J.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..69153a5d --- /dev/null +++ b/Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/BUSCO/medtr.HM010.gnm1.ann1.WV9J.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.BuK4ds/medtr.HM010.gnm1.ann1.WV9J.protein.faa", + "out": "BUSCO_proteins_fabales_odb10", + "mode": "proteins", + "lineage_dataset": 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b/Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/BUSCO/medtr.HM022.gnm1.ann1.6C8N.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.e6DabG/medtr.HM022.gnm1.ann1.6C8N.protein.faa", + "out": "BUSCO_proteins_fabales_odb10", + "mode": "proteins", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:98.3%[S:95.8%,D:2.5%],F:0.4%,M:1.3%,n:5366", + "Complete": 98.3, + "Single copy": 95.8, + "Multi copy": 2.5, + "Fragmented": 0.4, + "Missing": 1.3, + "n_markers": 5366, + "domain": "eukaryota" + } +} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/BUSCO/medtr.HM023.gnm1.ann1.WZN8.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/BUSCO/medtr.HM023.gnm1.ann1.WZN8.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..7e08fa26 --- /dev/null +++ b/Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/BUSCO/medtr.HM023.gnm1.ann1.WZN8.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.nCCiXg/medtr.HM023.gnm1.ann1.WZN8.protein.faa", + "out": "BUSCO_proteins_fabales_odb10", + "mode": "proteins", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "busco": "5.4.3" + }, + "results": { + "one_line_summary": 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"auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.15TQNM/medtr.HM034.gnm1.ann1.YR6S.protein.faa", + "out": "BUSCO_proteins_fabales_odb10", + "mode": "proteins", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:98.7%[S:96.1%,D:2.6%],F:0.5%,M:0.8%,n:5366", + "Complete": 98.7, + "Single copy": 96.1, + "Multi copy": 2.6, + "Fragmented": 0.5, + "Missing": 0.8, + "n_markers": 5366, + "domain": "eukaryota" + } +} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/BUSCO/medtr.HM050.gnm1.ann1.GWRX.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/BUSCO/medtr.HM050.gnm1.ann1.GWRX.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..d5ebf246 --- /dev/null +++ b/Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/BUSCO/medtr.HM050.gnm1.ann1.GWRX.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": 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b/Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/BUSCO/medtr.HM056.gnm1.ann1.CHP6.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..0e315ba8 --- /dev/null +++ b/Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/BUSCO/medtr.HM056.gnm1.ann1.CHP6.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.PoO2Xn/medtr.HM056.gnm1.ann1.CHP6.protein.faa", + "out": "BUSCO_proteins_fabales_odb10", + "mode": "proteins", + "lineage_dataset": 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b/Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/BUSCO/medtr.HM058.gnm1.ann1.LXPZ.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.cZcyKJ/medtr.HM058.gnm1.ann1.LXPZ.protein.faa", + "out": "BUSCO_proteins_fabales_odb10", + "mode": "proteins", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:98.3%[S:95.7%,D:2.6%],F:0.6%,M:1.1%,n:5366", + "Complete": 98.3, + "Single copy": 95.7, + "Multi copy": 2.6, + "Fragmented": 0.6, + "Missing": 1.1, + "n_markers": 5366, + "domain": "eukaryota" + } +} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/BUSCO/medtr.HM060.gnm1.ann1.H41P.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/BUSCO/medtr.HM060.gnm1.ann1.H41P.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..7997c5f1 --- /dev/null +++ b/Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/BUSCO/medtr.HM060.gnm1.ann1.H41P.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.1oxdH0/medtr.HM060.gnm1.ann1.H41P.protein.faa", + "out": "BUSCO_proteins_fabales_odb10", + "mode": "proteins", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:98.7%[S:96.2%,D:2.5%],F:0.6%,M:0.7%,n:5366", + "Complete": 98.7, + "Single copy": 96.2, + "Multi copy": 2.5, + "Fragmented": 0.6, + "Missing": 0.7, + "n_markers": 5366, + "domain": "eukaryota" + } +} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/BUSCO/medtr.HM095.gnm1.ann1.55W4.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/BUSCO/medtr.HM095.gnm1.ann1.55W4.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..a9993416 --- /dev/null +++ b/Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/BUSCO/medtr.HM095.gnm1.ann1.55W4.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.TV5jVO/medtr.HM095.gnm1.ann1.55W4.protein.faa", + "out": "BUSCO_proteins_fabales_odb10", + "mode": "proteins", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:98.4%[S:95.8%,D:2.6%],F:0.7%,M:0.9%,n:5366", + "Complete": 98.4, + "Single copy": 95.8, + "Multi copy": 2.6, + "Fragmented": 0.7, + "Missing": 0.9, + "n_markers": 5366, + "domain": "eukaryota" + } +} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/BUSCO/medtr.HM125.gnm1.ann1.KY5W.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/BUSCO/medtr.HM125.gnm1.ann1.KY5W.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..0bc8b99f --- /dev/null +++ b/Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/BUSCO/medtr.HM125.gnm1.ann1.KY5W.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.9PGIA8/medtr.HM125.gnm1.ann1.KY5W.protein.faa", + "out": "BUSCO_proteins_fabales_odb10", + "mode": "proteins", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:98.6%[S:96.1%,D:2.5%],F:0.4%,M:1.0%,n:5366", + "Complete": 98.6, + "Single copy": 96.1, + "Multi copy": 2.5, + "Fragmented": 0.4, + "Missing": 1.0, + "n_markers": 5366, + "domain": "eukaryota" + } +} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/BUSCO/medtr.HM129.gnm1.ann1.7FTD.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/BUSCO/medtr.HM129.gnm1.ann1.7FTD.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..c1a2bd76 --- /dev/null +++ b/Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/BUSCO/medtr.HM129.gnm1.ann1.7FTD.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.fvwIyl/medtr.HM129.gnm1.ann1.7FTD.protein.faa", + "out": "BUSCO_proteins_fabales_odb10", + "mode": "proteins", + "lineage_dataset": 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b/Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/BUSCO/medtr.HM185.gnm1.ann1.GB3D.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.vnh6ZD/medtr.HM185.gnm1.ann1.GB3D.protein.faa", + "out": "BUSCO_proteins_fabales_odb10", + "mode": "proteins", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:98.6%[S:96.3%,D:2.3%],F:0.5%,M:0.9%,n:5366", + "Complete": 98.6, + "Single copy": 96.3, + "Multi copy": 2.3, + "Fragmented": 0.5, + "Missing": 0.9, + "n_markers": 5366, + "domain": "eukaryota" + } +} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/BUSCO/medtr.HM324.gnm1.ann1.SQH2.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/BUSCO/medtr.HM324.gnm1.ann1.SQH2.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..26740b9b --- /dev/null +++ b/Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/BUSCO/medtr.HM324.gnm1.ann1.SQH2.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.xTv8p9/medtr.HM324.gnm1.ann1.SQH2.protein.faa", + "out": "BUSCO_proteins_fabales_odb10", + "mode": "proteins", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:96.5%[S:93.9%,D:2.6%],F:1.6%,M:1.9%,n:5366", + "Complete": 96.5, + "Single copy": 93.9, + "Multi copy": 2.6, + "Fragmented": 1.6, + "Missing": 1.9, + "n_markers": 5366, + "domain": "eukaryota" + } +} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/BUSCO/medtr.R108.gnmHiC_1.ann1.Y8NH.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/BUSCO/medtr.R108.gnmHiC_1.ann1.Y8NH.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..3f7e12cc --- /dev/null +++ b/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/BUSCO/medtr.R108.gnmHiC_1.ann1.Y8NH.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": 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"domain": "eukaryota" + } +} \ No newline at end of file diff --git a/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/BUSCO/medtr.R108_HM340.gnm1.ann1.85YW.busco.fabales_odb10.short_summary.json b/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/BUSCO/medtr.R108_HM340.gnm1.ann1.85YW.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..503b678f --- /dev/null +++ b/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/BUSCO/medtr.R108_HM340.gnm1.ann1.85YW.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + 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b/Medicago/truncatula/genomes/A17.gnm5.MVZ2/BUSCO/medtr.A17.gnm5.MVZ2.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..0494dcc0 --- /dev/null +++ b/Medicago/truncatula/genomes/A17.gnm5.MVZ2/BUSCO/medtr.A17.gnm5.MVZ2.busco.fabales_odb10.short_summary.json @@ -0,0 +1,62 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.5T53Ta/medtr.A17.gnm5.MVZ2.genome_main.fna", + "out": "BUSCO_genome_fabales_odb10", + "mode": "euk_genome_met", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + 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"Scaffold N50": "35700653", + "Contigs N50": "33243" + } +} \ No newline at end of file diff --git a/Vigna/unguiculata/genomes/Xiabao_II.gnm1.WDBP/BUSCO/vigun.Xiabao_II.gnm1.WDBP.busco.fabales_odb10.short_summary.json b/Vigna/unguiculata/genomes/Xiabao_II.gnm1.WDBP/BUSCO/vigun.Xiabao_II.gnm1.WDBP.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..83a7ab78 --- /dev/null +++ b/Vigna/unguiculata/genomes/Xiabao_II.gnm1.WDBP/BUSCO/vigun.Xiabao_II.gnm1.WDBP.busco.fabales_odb10.short_summary.json @@ -0,0 +1,62 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.mZ73Af/vigun.Xiabao_II.gnm1.WDBP.genome_main.fna", + "out": "BUSCO_genome_fabales_odb10", + "mode": "euk_genome_met", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_genome_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota", + "max_intron": "90000", + "max_seq_len": "120000", + "metaeuk_parameters": "", + "metaeuk_rerun_parameters": "", + "contig_break": "10", + "scaffold_composition": "False", + "gene_predictor": "metaeuk" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "bbtools": "38.96", + "metaeuk": "5.34c21f2", + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:98.4%[S:95.7%,D:2.7%],F:0.3%,M:1.3%,n:5366", + "Complete": 98.4, + "Single copy": 95.7, + "Multi copy": 2.7, + "Fragmented": 0.3, + "Missing": 1.3, + "n_markers": 5366, + "domain": "eukaryota", + "Number of scaffolds": "20329", + "Number of contigs": "56550", + "Total length": "634729538", + "Percent gaps": "13.312%", + "Scaffold N50": "52067057", + "Contigs N50": "25677" + } +} \ No newline at end of file diff --git a/Vigna/unguiculata/genomes/ZN016.gnm1.997F/BUSCO/vigun.ZN016.gnm1.997F.busco.fabales_odb10.short_summary.json b/Vigna/unguiculata/genomes/ZN016.gnm1.997F/BUSCO/vigun.ZN016.gnm1.997F.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..4e60ab2c --- /dev/null +++ b/Vigna/unguiculata/genomes/ZN016.gnm1.997F/BUSCO/vigun.ZN016.gnm1.997F.busco.fabales_odb10.short_summary.json @@ -0,0 +1,62 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.c6qSL2/vigun.ZN016.gnm1.997F.genome_main.fna", + "out": "BUSCO_genome_fabales_odb10", + "mode": "euk_genome_met", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_genome_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota", + "max_intron": "90000", + "max_seq_len": "120000", + "metaeuk_parameters": "", + "metaeuk_rerun_parameters": "", + "contig_break": "10", + "scaffold_composition": "False", + "gene_predictor": "metaeuk" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "bbtools": "38.96", + "metaeuk": "5.34c21f2", + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:97.9%[S:96.3%,D:1.6%],F:0.2%,M:1.9%,n:5366", + "Complete": 97.9, + "Single copy": 96.3, + "Multi copy": 1.6, + "Fragmented": 0.2, + "Missing": 1.9, + "n_markers": 5366, + "domain": "eukaryota", + "Number of scaffolds": "7032", + "Number of contigs": "30191", + "Total length": "451130807", + "Percent gaps": "0.502%", + "Scaffold N50": "37764243", + "Contigs N50": "42059" + } +} \ No newline at end of file From ab67ede570348456071e8370e56580ddbfb18da0 Mon Sep 17 00:00:00 2001 From: Sam Hokin Date: Mon, 31 Jul 2023 11:23:26 -0600 Subject: [PATCH 05/57] Removed null and empty string entries. ANNOYING! :) --- .../README.ISC453364.gnm3.ann1.3N1M.yml | 12 ------------ 1 file changed, 12 deletions(-) diff --git a/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/README.ISC453364.gnm3.ann1.3N1M.yml b/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/README.ISC453364.gnm3.ann1.3N1M.yml index f0773e4c..481de60a 100644 --- a/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/README.ISC453364.gnm3.ann1.3N1M.yml +++ b/Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/README.ISC453364.gnm3.ann1.3N1M.yml @@ -18,24 +18,12 @@ genotype: description: "Gene annotation resources. See full description at Phytozome/JGI repository (address above)." -bioproject: - -sraproject: - -dataset_doi: - -genbank_accession: - original_file_creation_date: "2023-03-08" local_file_creation_date: "2023-04-11" dataset_release_date: "2023-04-11" -publication_doi: "" - -publication_title: "" - contributors: Steven Cannon, Jim Leebens-Mack, Jacob Stai, Jeremy Schmutz citation: From a458d19e07f9e59a000fc5e684b8a5e4c88f2ce1 Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Mon, 31 Jul 2023 16:53:41 -0500 Subject: [PATCH 06/57] fixed https://github.com/legumeinfo/datastore-issues/issues/173 --- .../CHECKSUM.BaileyII.gnm1.ann1.PQM7.md5 | 44 +++++++++---------- 1 file changed, 22 insertions(+), 22 deletions(-) diff --git a/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/CHECKSUM.BaileyII.gnm1.ann1.PQM7.md5 b/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/CHECKSUM.BaileyII.gnm1.ann1.PQM7.md5 index c4ab7228..a8e8c56e 100644 --- a/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/CHECKSUM.BaileyII.gnm1.ann1.PQM7.md5 +++ b/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/CHECKSUM.BaileyII.gnm1.ann1.PQM7.md5 @@ -1,32 +1,32 @@ -02dbedc18815323e30eec595fa556563 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz.gzi -bbdad5f637a925ed0368652d4d2ba993 ./CHANGES.BaileyII.gnm1.ann1.PQM7.txt +4ce4998ed242ec712a47a499607c67d4 ./arahy.BaileyII.gnm1.ann1.PQM7.iprscan.gff3.gz c8af7ea9a8e0bac4d70b4a23276cd357 ./arahy.BaileyII.gnm1.ann1.PQM7.iprscan.gff3.gz.tbi -05d63d5e16363d66a34845c66093368d ./arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.gff3.gz.tbi 05cc37eaaafae25c1d05f8433694b74b ./arahy.BaileyII.gnm1.ann1.PQM7.protein_primary.faa.gz.fai -20af3147d82effa2a44e84236daa22f7 ./arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz.gzi -2aee8f192d394d54fcb2fafd210a4bdf ./arahy.BaileyII.gnm1.ann1.PQM7.mrna_primary.fna.gz.fai -42c355ec74fb824577b110ba271effdb ./arahy.BaileyII.gnm1.ann1.PQM7.protein.faa.gz +4e6397cc727b3e3f0555dc915de263fd ./arahy.BaileyII.gnm1.ann1.PQM7.legfed_v1_0.M65K.gfa.tsv.gz +4f3ea45a39352e256b707221996f8519 ./arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz.fai +5ab0441a4638cb21270a27b39a7b3f51 ./arahy.BaileyII.gnm1.ann1.PQM7.featid_map.tsv.gz +cf4d8036b1093eae9b2a7615ab720a8b ./arahy.BaileyII.gnm1.ann1.PQM7.protein.faa.gz.gzi +5648897603173e5c4b57e7613fba9e73 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz.fai +ecf9ffb317f0001d66c20d3215d74ff6 ./CHANGES.BaileyII.gnm1.ann1.PQM7.txt +8b5dcaea58e26c128630648733e7a296 ./arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.gff3.gz.tbi +96867c1af810c3d3cb0ea487f2cacf96 ./arahy.BaileyII.gnm1.ann1.PQM7.protein_primary.faa.gz +6ad8e897bc572391e5bbac140fd33764 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz +cb0021062b330884ca517852d88aee18 ./arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz.gzi 7598061dbaf537149cadb3ba40f607a0 ./MANIFEST.BaileyII.gnm1.ann1.PQM7.correspondence.yml +2aee8f192d394d54fcb2fafd210a4bdf ./arahy.BaileyII.gnm1.ann1.PQM7.mrna_primary.fna.gz.fai 1edc1c6239049b74e490c7f06c9b7607 ./arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz -cf4d8036b1093eae9b2a7615ab720a8b ./arahy.BaileyII.gnm1.ann1.PQM7.protein.faa.gz.gzi +f31ab431e5f847deb3409d7736604be6 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna_primary.fna.gz.gzi +7a650d98a8790240aecdb0ddc7974dad ./arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz a403aae1aff3b6b68730518767c2933f ./arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz.fai -2ee5e901b70ac24c156df69a32b9040a ./README.BaileyII.gnm1.ann1.PQM7.yml -4e6397cc727b3e3f0555dc915de263fd ./arahy.BaileyII.gnm1.ann1.PQM7.legfed_v1_0.M65K.gfa.tsv.gz -5ab0441a4638cb21270a27b39a7b3f51 ./arahy.BaileyII.gnm1.ann1.PQM7.featid_map.tsv.gz +02dbedc18815323e30eec595fa556563 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz.gzi 9da737be083ede7907ce5fcf9ab4dfbc ./arahy.BaileyII.gnm1.ann1.PQM7.cds.bed.gz -43a44f4e17df10c20583de776b8388b9 ./BUSCO/arahy.BaileyII.gnm1.ann1.PQM7.busco.fabales_odb10.full_table.tsv.gz -f107c0523dad3cc6afd56483b365f876 ./BUSCO/arahy.BaileyII.gnm1.ann1.PQM7.busco.fabales_odb10.short_summary.txt -a9bd2c5549a4fae499d530b5d54ebbaf ./BUSCO/arahy.BaileyII.gnm1.ann1.PQM7.busco.fabales_odb10.short_summary.json -147da7e52ca9aa6dde53f0028fef6e94 ./arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.gff3.gz -cb0021062b330884ca517852d88aee18 ./arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz.gzi -6ad8e897bc572391e5bbac140fd33764 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz -96867c1af810c3d3cb0ea487f2cacf96 ./arahy.BaileyII.gnm1.ann1.PQM7.protein_primary.faa.gz -4ce4998ed242ec712a47a499607c67d4 ./arahy.BaileyII.gnm1.ann1.PQM7.iprscan.gff3.gz 2d54a7d217f808791905ed31a7a4275c ./arahy.BaileyII.gnm1.ann1.PQM7.mrna_primary.fna.gz +eb85e3881396036eb05d0ab5fe6dfc53 ./arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.gff3.gz +20af3147d82effa2a44e84236daa22f7 ./arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz.gzi c7d02a9f65f3c817de73275bf6e05192 ./arahy.BaileyII.gnm1.ann1.PQM7.protein.faa.gz.fai +42c355ec74fb824577b110ba271effdb ./arahy.BaileyII.gnm1.ann1.PQM7.protein.faa.gz 419d9bcc64228dbe31768e4388386267 ./MANIFEST.BaileyII.gnm1.ann1.PQM7.descriptions.yml +6fa6d30adb7fbd5f1abd51d0924e1a08 ./README.BaileyII.gnm1.ann1.PQM7.yml 10b11b555c4e324549a9f4ba3e2455c5 ./arahy.BaileyII.gnm1.ann1.PQM7.protein_primary.faa.gz.gzi -f31ab431e5f847deb3409d7736604be6 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna_primary.fna.gz.gzi -4f3ea45a39352e256b707221996f8519 ./arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz.fai -7a650d98a8790240aecdb0ddc7974dad ./arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz -5648897603173e5c4b57e7613fba9e73 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz.fai +43a44f4e17df10c20583de776b8388b9 ./BUSCO/arahy.BaileyII.gnm1.ann1.PQM7.busco.fabales_odb10.full_table.tsv.gz +f107c0523dad3cc6afd56483b365f876 ./BUSCO/arahy.BaileyII.gnm1.ann1.PQM7.busco.fabales_odb10.short_summary.txt +a9bd2c5549a4fae499d530b5d54ebbaf ./BUSCO/arahy.BaileyII.gnm1.ann1.PQM7.busco.fabales_odb10.short_summary.json From d9975ce39b0fc707f451325bb8acb7255ead5a03 Mon Sep 17 00:00:00 2001 From: sdash Date: Thu, 3 Aug 2023 18:27:51 -0500 Subject: [PATCH 07/57] md5sum update 96TT after aradu-x-araip alignment files. --- .../V14167.gnm2.wga.96TT/CHECKSUM.V14167.gnm2.wga.96TT.md5 | 3 +++ 1 file changed, 3 insertions(+) diff --git a/Arachis/duranensis/genome_alignments/V14167.gnm2.wga.96TT/CHECKSUM.V14167.gnm2.wga.96TT.md5 b/Arachis/duranensis/genome_alignments/V14167.gnm2.wga.96TT/CHECKSUM.V14167.gnm2.wga.96TT.md5 index 010a0d9f..7d81ff8f 100644 --- a/Arachis/duranensis/genome_alignments/V14167.gnm2.wga.96TT/CHECKSUM.V14167.gnm2.wga.96TT.md5 +++ b/Arachis/duranensis/genome_alignments/V14167.gnm2.wga.96TT/CHECKSUM.V14167.gnm2.wga.96TT.md5 @@ -1,3 +1,6 @@ 4731a0e03dbfbd1f948a53f410b99e02 ./aradu.V14167.gnm2.x.araca.K10017.gnm1.96TT.bam.bai e7073a23548fc4468fb8110c85dab052 ./aradu.V14167.gnm2.x.araca.K10017.gnm1.96TT.bam +0c934f29943813ac8f871e45f9fda7b6 ./aradu.V14167.gnm2.x.araip.K30076.gnm2.96TT.minimap2.paf.gz +85eaaeb86a4cc65991ed665cb98f905c ./aradu.V14167.gnm2.x.araip.K30076.gnm2.96TT.minimap2.bam 8b382bd83eead73f00d0bcf61899b99b ./aradu.V14167.gnm2.x.araca.K10017.gnm1.96TT.paf.gz +8bed4421eee949846a8a0b6bea35024b ./aradu.V14167.gnm2.x.araip.K30076.gnm2.96TT.minimap2.bam.bai From daee8ecb65ac22e4c074ba68b5cef22eba02265c Mon Sep 17 00:00:00 2001 From: Sam Hokin Date: Fri, 4 Aug 2023 16:03:27 -0600 Subject: [PATCH 08/57] Added chromosome/supercontig_prefix --- .../BaileyII.gnm1.1JTF/README.BaileyII.gnm1.1JTF.yml | 9 ++------- 1 file changed, 2 insertions(+), 7 deletions(-) diff --git a/Arachis/hypogaea/genomes/BaileyII.gnm1.1JTF/README.BaileyII.gnm1.1JTF.yml b/Arachis/hypogaea/genomes/BaileyII.gnm1.1JTF/README.BaileyII.gnm1.1JTF.yml index c1c07e29..5d5cc9fe 100644 --- a/Arachis/hypogaea/genomes/BaileyII.gnm1.1JTF/README.BaileyII.gnm1.1JTF.yml +++ b/Arachis/hypogaea/genomes/BaileyII.gnm1.1JTF/README.BaileyII.gnm1.1JTF.yml @@ -18,13 +18,9 @@ genotype: description: "Bailey II PacBio CLR reads greater than 8,150 bp were assembled by CANU (Koren et al., 2017) v. 1.9. Resulting contigs underwent one round of polishing with Arrow (Pacific BioSciences SMRT Tools Reference Guide, 2019), followed by additional polishing with Pilon (Walker et al., 2014) v. 1.23. Circular contigs, as labeled in the output of CANU (Koren et al., 2017) v. 1.9, were removed from the assembly. Bionano optical data was used to scaffold the assembly and then RagTag (Alonge et al., 2019) was used to generate pseudomolecules. See full description at Newman et al. (2022), below." -bioproject: +chromosome_prefix: chr -sraproject: - -dataset_doi: - -genbank_accession: +supercontig_prefix: Scaffold original_file_creation_date: "2023-03-13" @@ -47,4 +43,3 @@ public_access_level: public license: Open keywords: Peanut, Virginia, Bailey, introgression - From 5f3e0b37d38747ede48e95f2f06d7d0e4f93a614 Mon Sep 17 00:00:00 2001 From: Sam Hokin Date: Fri, 4 Aug 2023 16:03:45 -0600 Subject: [PATCH 09/57] Added scientific_name_abbrev. --- .../pangenes/Arachis.pan1.4LN9/README.Arachis.pan1.4LN9.yml | 2 ++ .../pangenes/Medicago.pan1.XXQ6/README.Medicago.pan1.XXQ6.yml | 2 ++ Vigna/GENUS/pangenes/Vigna.pan1.X2PC/README.Vigna.pan1.X2PC.yml | 2 ++ 3 files changed, 6 insertions(+) diff --git a/Arachis/GENUS/pangenes/Arachis.pan1.4LN9/README.Arachis.pan1.4LN9.yml b/Arachis/GENUS/pangenes/Arachis.pan1.4LN9/README.Arachis.pan1.4LN9.yml index d7cf62b3..b8dc4ad0 100644 --- a/Arachis/GENUS/pangenes/Arachis.pan1.4LN9/README.Arachis.pan1.4LN9.yml +++ b/Arachis/GENUS/pangenes/Arachis.pan1.4LN9/README.Arachis.pan1.4LN9.yml @@ -9,6 +9,8 @@ synopsis: "Pangene set for Arachis species, based on A. hypogaea, A. duranensis, scientific_name: Arachis +scientific_name_abbrev: Arachis + taxid: 3826 annotations_main: diff --git a/Medicago/GENUS/pangenes/Medicago.pan1.XXQ6/README.Medicago.pan1.XXQ6.yml b/Medicago/GENUS/pangenes/Medicago.pan1.XXQ6/README.Medicago.pan1.XXQ6.yml index 4305be3a..94f3c7ad 100644 --- a/Medicago/GENUS/pangenes/Medicago.pan1.XXQ6/README.Medicago.pan1.XXQ6.yml +++ b/Medicago/GENUS/pangenes/Medicago.pan1.XXQ6/README.Medicago.pan1.XXQ6.yml @@ -9,6 +9,8 @@ synopsis: "Pangene set for Medicago species, based primarily on M. truncatula bu scientific_name: Medicago +scientific_name_abbrev: Medicago + taxid: 3877 annotations_main: diff --git a/Vigna/GENUS/pangenes/Vigna.pan1.X2PC/README.Vigna.pan1.X2PC.yml b/Vigna/GENUS/pangenes/Vigna.pan1.X2PC/README.Vigna.pan1.X2PC.yml index e4b7d1dc..5cdd895e 100644 --- a/Vigna/GENUS/pangenes/Vigna.pan1.X2PC/README.Vigna.pan1.X2PC.yml +++ b/Vigna/GENUS/pangenes/Vigna.pan1.X2PC/README.Vigna.pan1.X2PC.yml @@ -9,6 +9,8 @@ synopsis: "Pangene set for Vigna species, based primarily on V. unguiculata but scientific_name: Vigna +scientific_name_abbrev: Vigna + taxid: 3913 annotations_main: From c2cea357f0ae661017f7e5d9cfba068ce0938404 Mon Sep 17 00:00:00 2001 From: sdash Date: Fri, 4 Aug 2023 22:17:19 -0500 Subject: [PATCH 10/57] Checksum update after genome alignments aradu-arast added. --- .../CHECKSUM.V14167.gnm2.wga.96TT.md5 | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/Arachis/duranensis/genome_alignments/V14167.gnm2.wga.96TT/CHECKSUM.V14167.gnm2.wga.96TT.md5 b/Arachis/duranensis/genome_alignments/V14167.gnm2.wga.96TT/CHECKSUM.V14167.gnm2.wga.96TT.md5 index 7d81ff8f..eba84cd4 100644 --- a/Arachis/duranensis/genome_alignments/V14167.gnm2.wga.96TT/CHECKSUM.V14167.gnm2.wga.96TT.md5 +++ b/Arachis/duranensis/genome_alignments/V14167.gnm2.wga.96TT/CHECKSUM.V14167.gnm2.wga.96TT.md5 @@ -1,6 +1,9 @@ 4731a0e03dbfbd1f948a53f410b99e02 ./aradu.V14167.gnm2.x.araca.K10017.gnm1.96TT.bam.bai +12932a26df9526364658f84eb68239be ./aradu.V14167.gnm2.x.arast.V10309.gnm1.96TT.bam +0c934f29943813ac8f871e45f9fda7b6 ./aradu.V14167.gnm2.x.araip.K30076.gnm2.96TT.paf.gz e7073a23548fc4468fb8110c85dab052 ./aradu.V14167.gnm2.x.araca.K10017.gnm1.96TT.bam -0c934f29943813ac8f871e45f9fda7b6 ./aradu.V14167.gnm2.x.araip.K30076.gnm2.96TT.minimap2.paf.gz -85eaaeb86a4cc65991ed665cb98f905c ./aradu.V14167.gnm2.x.araip.K30076.gnm2.96TT.minimap2.bam +85eaaeb86a4cc65991ed665cb98f905c ./aradu.V14167.gnm2.x.araip.K30076.gnm2.96TT.bam +f559540a5d3512bd2a648e4582e6190b ./aradu.V14167.gnm2.x.arast.V10309.gnm1.96TT.paf.gz 8b382bd83eead73f00d0bcf61899b99b ./aradu.V14167.gnm2.x.araca.K10017.gnm1.96TT.paf.gz -8bed4421eee949846a8a0b6bea35024b ./aradu.V14167.gnm2.x.araip.K30076.gnm2.96TT.minimap2.bam.bai +8bed4421eee949846a8a0b6bea35024b ./aradu.V14167.gnm2.x.araip.K30076.gnm2.96TT.bam.bai +e04b1a5c51bc75b950181b7a6f4bdba6 ./aradu.V14167.gnm2.x.arast.V10309.gnm1.96TT.bam.bai From 1ac3585e7340343c863ede96f1ab5db2e18e5dcf Mon Sep 17 00:00:00 2001 From: Sam Hokin Date: Sat, 5 Aug 2023 07:09:20 -0600 Subject: [PATCH 11/57] Removed blank, empty string entries. --- .../README.Medicago.pan1.XXQ6.yml | 15 --------------- .../Vigna.pan1.X2PC/README.Vigna.pan1.X2PC.yml | 15 --------------- 2 files changed, 30 deletions(-) diff --git a/Medicago/GENUS/pangenes/Medicago.pan1.XXQ6/README.Medicago.pan1.XXQ6.yml b/Medicago/GENUS/pangenes/Medicago.pan1.XXQ6/README.Medicago.pan1.XXQ6.yml index 94f3c7ad..a8498c16 100644 --- a/Medicago/GENUS/pangenes/Medicago.pan1.XXQ6/README.Medicago.pan1.XXQ6.yml +++ b/Medicago/GENUS/pangenes/Medicago.pan1.XXQ6/README.Medicago.pan1.XXQ6.yml @@ -42,28 +42,14 @@ annotations_extra: description: "Pan-gene set for Medicago species, spanning 2 species and 19 annotation sets, calculated using the pandagma pipeline, version 2023-04-03" -bioproject: - -sraproject: - -dataset_doi: - -genbank_accession: - original_file_creation_date: "2023-04-03" local_file_creation_date: "2023-04-03" dataset_release_date: "2023-04-03" -publication_doi: "" - -publication_title: "" - contributors: Steven Cannon, Hyunoh Lee -citation: - data_curators: Steven Cannon public_access_level: public @@ -71,4 +57,3 @@ public_access_level: public license: Open keywords: Medicago, barrel medic, alfalfa, lucerne, pan-gene, pangene, orthogroup - diff --git a/Vigna/GENUS/pangenes/Vigna.pan1.X2PC/README.Vigna.pan1.X2PC.yml b/Vigna/GENUS/pangenes/Vigna.pan1.X2PC/README.Vigna.pan1.X2PC.yml index 5cdd895e..5eced837 100644 --- a/Vigna/GENUS/pangenes/Vigna.pan1.X2PC/README.Vigna.pan1.X2PC.yml +++ b/Vigna/GENUS/pangenes/Vigna.pan1.X2PC/README.Vigna.pan1.X2PC.yml @@ -31,28 +31,14 @@ annotations_extra: description: "Pan-gene set for Vigna species, spanning 3 species and 12 annotation sets, calculated using the pandagma pipeline, version 2023-04-03" -bioproject: - -sraproject: - -dataset_doi: - -genbank_accession: - original_file_creation_date: "2023-04-03" local_file_creation_date: "2023-04-03" dataset_release_date: "2023-04-03" -publication_doi: "" - -publication_title: "" - contributors: Steven Cannon, Hyunoh Lee -citation: - data_curators: Steven Cannon public_access_level: public @@ -60,4 +46,3 @@ public_access_level: public license: Open keywords: Vigna, cowpea, mung bean, pan-gene, pangene, orthogroup - From 236a57a653f82cbd5ce738e806ad2a87891ab76c Mon Sep 17 00:00:00 2001 From: sdash-github Date: Thu, 10 Aug 2023 10:44:46 -0600 Subject: [PATCH 12/57] Updated metadata for araca, aradu, arahy, araip and arast. --- .../description_Arachis_cardenasii.yml | 5 ++++- .../description_Arachis_duranensis.yml | 15 ++++++++++++++- .../description_Arachis_hypogaea.yml | 19 ++++++++++++------- .../description_Arachis_ipaensis.yml | 16 ++++++++++++++-- .../description_Arachis_stenosperma.yml | 5 ++++- 5 files changed, 48 insertions(+), 12 deletions(-) diff --git a/Arachis/cardenasii/about_this_collection/description_Arachis_cardenasii.yml b/Arachis/cardenasii/about_this_collection/description_Arachis_cardenasii.yml index 7902f6e9..1976dfab 100644 --- a/Arachis/cardenasii/about_this_collection/description_Arachis_cardenasii.yml +++ b/Arachis/cardenasii/about_this_collection/description_Arachis_cardenasii.yml @@ -5,7 +5,10 @@ species: cardenasii abbrev: araca commonName: Mani silvestre (wild peanut) description: "Arachis cardenasii Krapov. & W.C. Greg. is a wild peanut relative native to Bolivia. It has been used by peanut breeders and geneticists in interspecific hybrids with cultivated peanut (A. hypogaea) as a source of pest and disease resistance. A. cardenasii is a diploid species in the 'A-genome' group of Arachis, similar to A. duranensis, which contributed one of the two subgenomes to tetraploid cultivated peanut." - +resources: + - name: Dowload at DS + URL: "https://data.legumeinfo.org/Arachis/cardenasii/" + description: "DataStore dir for Arachis cardenasii." strains: - identifier: K10017 accession: PI 262141 diff --git a/Arachis/duranensis/about_this_collection/description_Arachis_duranensis.yml b/Arachis/duranensis/about_this_collection/description_Arachis_duranensis.yml index 19dc9aca..815918ec 100644 --- a/Arachis/duranensis/about_this_collection/description_Arachis_duranensis.yml +++ b/Arachis/duranensis/about_this_collection/description_Arachis_duranensis.yml @@ -5,10 +5,23 @@ species: duranensis abbrev: aradu commonName: diploid wild peanut - A-genome description: "Arachis duranensis, a wild herb native to Argentina, Bolivia, and Paraguay, is thought to be one of the diploid ancestors of cultivated peanut. Its genome has been sequenced as part of the Peanut Genomics Initiative, to help in the accurate assembly of the more important cultivated peanut, A. hypogaea. Cultivated peanut derived all of its genetic material from two wild ancestors, A. duranensis and A. ipaensis whose genomes merged several thousand years ago, in a rare genetic event. The wild species, therefore, have half as much genetic material as cultivated peanut. These two simpler genomes have first been sequenced toward achieving its ultimate goal: the complete genomic sequence for cultivated peanut. The cultivated peanut is an allotetraploid (2n=4x=40) that carries both the A and B genomes and A. duranensis (2n=2x=20) has likely contributed the A genome, the smaller set of chromosomes in the karyotype. These two ancestral diploids separated from each other about 3 million years ago. The genome merger, allopolyploidy event, ocurred relatively very recently, five to ten thousand years ago, followed by domestication in South America from where it appeared in most part of the world by 1600. Arachis duranensis is described further in Bertioli et al., 2016 (doi:10.1038/ng.3517)" - +resources: + - name: Dowload at DS + URL: "https://data.legumeinfo.org/Arachis/duranensis/" + description: "DataStore dir for Arachis duranensis." strains: - identifier: V14167 accession: V14167 name: V14167 origin: Argentina, via USDA National Plant Germplasm Repository description: "Arachis duranensis strain V14167 originates in a region east of the Andes, in the vicinity of northern Argentina and southern Bolivia. This accession is thought to be one of the diploid ancestors of cultivated peanut. Its genome has been sequenced as part of the Peanut Genomics Initiative, to help in the accurate assembly of the more important cultivated peanut, A. hypogaea. This accession is described in Bertioli et al., 2016 (doi:10.1038/ng.3517)" + resources: + - name: Peanutbase Genome Browser (GBrowse) + URL: "https://legacy.peanutbase.org/gb2/gbrowse/Aradu1.0" + description: "GBrowse for V14167 assembly 1.0" + - name: Peanutbase Genome Browser (JBrowse) + URL: "https://legacy.peanutbase.org/genomes/jbrowse?data=Aradu1.0" + description: "JBrowse for V14167 assembly 1.0" + - name: "Genome assembly at NCBI" + URL: "http://www.ncbi.nlm.nih.gov/assembly/GCA_000817695.1/" + description: "Genome assembly at NCBI, V14167" diff --git a/Arachis/hypogaea/about_this_collection/description_Arachis_hypogaea.yml b/Arachis/hypogaea/about_this_collection/description_Arachis_hypogaea.yml index 0df2a678..36ec45ce 100644 --- a/Arachis/hypogaea/about_this_collection/description_Arachis_hypogaea.yml +++ b/Arachis/hypogaea/about_this_collection/description_Arachis_hypogaea.yml @@ -25,6 +25,9 @@ resources: - name: Germplasm GIS URL: "https://germplasm-map.legumeinfo.org/#?zoom=6&maxRecs=200&taxonQuery=&traitOverlay=&traitScale=global&country=&geocodedOnly=false&traitExcludeUnchar=false&limitToMapExtent&lat=35.87&lng=-109.48&mapHeight=210.25&baseMap=ESRI%20-%20NatGeo%20(default,%20reference%20map)&ne_lat=37.71859032558816&ne_lng=-95.00976562500001&sw_lat=33.97980872872457&sw_lng=-123.94775390625001" description: "Geographic information system viewer, showing collection locations for Arachis data held by the U.S. National Plant Germplasm System." + - name: Dowload at DS + URL: "https://data.legumeinfo.org/Arachis/hypogaea/" + description: "DataStore dir for Arachis hypogaea." strains: - identifier: Tifrunner @@ -33,11 +36,17 @@ strains: origin: Southeastern United States description: "Cultivar Tifrunner is a runner-type peanut bred in the United States and widely planted as a variety and widely used in breeding programs. The genome of this cultivar is described in Bertioli et al., 2019 (doi:10.1038/s41588-019-0405-z)." resources: + - name: Peanutbase Genome Browser (GBrowse) + URL: "https://legacy.peanutbase.org/gbrowse_peanut1.0" + description: "GBrowse for Tifrunner assembly 1.0" - name: Peanutbase Genome Browser (JBrowse) - URL: "/assets/js/jbrowse/?assembly=Tifrunner.gnm1.KYV3&tracks=Tifrunner.gnm2.ann1.4K0L&loc=arahy.Tifrunner.chr01:1-1000000" + URL: "https://legacy.peanutbase.org/genomes/jbrowse?data=arahy.Tifrunner.gnm1" description: "JBrowse for Tifrunner assembly 1.0" + - name: PeanutBase Genome Browser (GBrowse) + URL: "https://legacy.peanutbase.org/gb2/gbrowse/arahy.Tifrunner.gnm2/" + description: "GBrowse for Tifrunner assembly 2.0" - name: LIS SequenceServer - URL: "https://sequenceserver.legumeinfo.org/" + URL: "https://www.peanutbase.org/tools/sequenceserver/" description: "SequenceServer BLAST against the Tifrunner v2 assembly" - identifier: Fuhuasheng accession: GH00910 @@ -52,13 +61,9 @@ strains: description: Arachis hypogaea var. Shitouqi (zh.h0235), the most widely cultivated peanut ecotype in the world, is a Chinese cultivar and breeding parent belonging to subspecies fastigiata, botanical type vulgaris and agronomic type Spanish with heterozygosity only 1/6,537 nucleotides on average. - - identifier: Bailey_II + - identifier: BaileyII accession: BaileyII name: Bailey II origin: Southeast US description: Virginia-type peanut cultivar developed by NCSU breeding program. Bailey II is a near-isogenic line to Bailey, possessing high-oleic trait and resistance to several important pathogens, derived from A. cardenasii introgressions. - resources: - - name: Peanutbase Genome Browser (JBrowse) - URL: "https://www.peanutbase.org/tools/jbrowse2/?session=share-h9filRRpe1&password=JvI9y" - description: "JBrowse for Bailey II assembly 1" diff --git a/Arachis/ipaensis/about_this_collection/description_Arachis_ipaensis.yml b/Arachis/ipaensis/about_this_collection/description_Arachis_ipaensis.yml index 0ddf8b18..c6e0512c 100644 --- a/Arachis/ipaensis/about_this_collection/description_Arachis_ipaensis.yml +++ b/Arachis/ipaensis/about_this_collection/description_Arachis_ipaensis.yml @@ -5,11 +5,23 @@ species: ipaensis abbrev: araip commonName: diploid wild peanut - B genome description: "Arachis ipaensis A. ipaensis, native to Bolivia, is thought to be one of the diploid ancestors of cultivated peanut. The genome of A. ipaensis has just been sequenced as part of the Peanut Genomics Initiative, to help in the accurate assembly of the tetraploid domestic peanut, A. hypogaea. Cultivated peanut derived all of its genetic material from two wild ancestors, A. duranensis and A. ipaensis whose genomes merged several thousand years ago, in a rare genetic event. The wild species, therefore, have half as much genetic material as cultivated peanut. These two simpler genomes have first been sequenced toward achieving its ultimate goal: the complete genomic sequence for cultivated peanut. Arachis ipaensis is described further in Bertioli et al., 2016 (doi:10.1038/ng.3517)" - +resources: + - name: Dowload at DS + URL: "https://data.legumeinfo.org/Arachis/ipaensis/" + description: "DataStore dir for Arachis ipaensis." strains: - identifier: K30076 accession: K30076 name: K30076 origin: Southern Bolivia description: "Arachis ipaensis accession K30076 is the only accession collected from what is thought to be the origin of tetraploid peanut, Villa Montes Bolivia. It was likely carried there by early agriculturalists from a larger population several hundred kilometers to the north (Bertioli et al., 2016: doi:10.1038/ng.3517)" - + resources: + - name: Peanutbase Genome Browser (GBrowse) + URL: "https://legacy.peanutbase.org/gb2/gbrowse/Araip1.0" + description: "GBrowse for K30076 assembly 1.0" + - name: Peanutbase Genome Browser (JBrowse) + URL: "https://legacy.peanutbase.org/genomes/jbrowse?data=Araip1.0" + description: "JBrowse for K30076 assembly 1.0" + - name: "Genome assembly at NCBI" + URL: "http://www.ncbi.nlm.nih.gov/assembly/GCA_000816755.1/" + description: "Genome assembly at NCBI, K30076" diff --git a/Arachis/stenosperma/about_this_collection/description_Arachis_stenosperma.yml b/Arachis/stenosperma/about_this_collection/description_Arachis_stenosperma.yml index 9e442e87..fdd3a8a3 100644 --- a/Arachis/stenosperma/about_this_collection/description_Arachis_stenosperma.yml +++ b/Arachis/stenosperma/about_this_collection/description_Arachis_stenosperma.yml @@ -5,7 +5,10 @@ species: stenosperma abbrev: arast commonName: Amendoim silvestre (wild peanut) description: "Arachis stenosperma Krapov. & W.C. Greg. is a wild peanut relative native to central Brazil, in the past it was cultivated by native peoples of South America, and was carried to the Atlantic coast, where populations persist to the present day. It is a source of strong pest and disease resistance and has been used by peanut breeders and geneticists in interspecific hybrids. A. stenosperma is diploid species in the A-genome group of Arachis, which has similarity to the A genome of tetraploid cultivated peanut (A. hypogaea)." - +resources: + - name: Dowload at DS + URL: "https://data.legumeinfo.org/Arachis/stenosperma/" + description: "DataStore dir for Arachis stenosperma." strains: - identifier: V10309 accession: "PI 666100" From 056b38862bb0ac639da691ced75ff5dfd17c90aa Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Tue, 15 Aug 2023 10:59:55 -0500 Subject: [PATCH 13/57] fixed https://github.com/legumeinfo/datastore-issues/issues/175 --- .../CHECKSUM.Hedin2.gnm1.ann1.PTNK.md5 | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/CHECKSUM.Hedin2.gnm1.ann1.PTNK.md5 b/Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/CHECKSUM.Hedin2.gnm1.ann1.PTNK.md5 index a33dd769..8bc13cc4 100644 --- a/Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/CHECKSUM.Hedin2.gnm1.ann1.PTNK.md5 +++ b/Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/CHECKSUM.Hedin2.gnm1.ann1.PTNK.md5 @@ -1,8 +1,9 @@ 5c5cf9de03b543dcd169ae840b3ad8bb ./vicfa.Hedin2.gnm1.ann1.PTNK.transcript.fna.gz.fai 47dbe51e25979e5e904175a7a7aeaec9 ./vicfa.Hedin2.gnm1.ann1.PTNK.ncrna.fna.gz -56f24a58ebf87f5762efd9f9baa11d79 ./vicfa.Hedin2.gnm1.ann1.PTNK.gene_models_main.gff3.gz +bcacdca92a817010d2cd8d450c872229 ./vicfa.Hedin2.gnm1.ann1.PTNK.gene_models_main.gff3.gz b09724b6f80f04781336167789084b42 ./vicfa.Hedin2.gnm1.ann1.PTNK.cds.bed.gz d3826f0567a1661fd4916ffd0fc78a45 ./README.Hedin2.gnm1.ann1.PTNK.yml +986ba7c2a0e7d1fc380d55d6d8c1a0ac ./feature_id_remapping 6979931d750c9afbfa65a9838027e8aa ./vicfa.Hedin2.gnm1.ann1.PTNK.mrna_primary.fna.gz.fai 029d6467c673a94722190bcc444d1a59 ./vicfa.Hedin2.gnm1.ann1.PTNK.protein.faa.gz.fai ffe9912a53db38b8b2ffcdd155bf1725 ./vicfa.Hedin2.gnm1.ann1.PTNK.protein_primary.faa.gz @@ -20,7 +21,7 @@ fbbb8907cd12c4ef02dbcd37726bd5e3 ./MANIFEST.Hedin2.gnm1.ann1.PTNK.correspondenc 06be9bc2e4f29e1e4bbd925da91f5376 ./vicfa.Hedin2.gnm1.ann1.PTNK.cds_primary.fna.gz befd4b6355f07f5292e835a1bee03dc3 ./vicfa.Hedin2.gnm1.ann1.PTNK.mrna_primary.fna.gz 623e0806cd35bd0dcdc1c7f37750d244 ./vicfa.Hedin2.gnm1.ann1.PTNK.protein.faa.gz -6be8936f4e57781529cbbb62fb4b1dfa ./CHANGES.Hedin2.gnm1.ann1.PTNK.txt +93564eb4e6993e8dbef9e213c43a7c72 ./CHANGES.Hedin2.gnm1.ann1.PTNK.txt 2799068b25af8d1e6cad58b9535dbee8 ./vicfa.Hedin2.gnm1.ann1.PTNK.cds.fna.gz.gzi fe33c54acbe17df091db6530aaa401a7 ./vicfa.Hedin2.gnm1.ann1.PTNK.ncrna.fna.gz.gzi c8340f7065cd499f59aa3508f69309b0 ./vicfa.Hedin2.gnm1.ann1.PTNK.protein_primary.faa.gz.fai @@ -28,7 +29,7 @@ ef285e336f5ddc972cfabb29b20e81bd ./vicfa.Hedin2.gnm1.ann1.PTNK.cds_primary.fna. 0bae3cdabedf5fc3e2221ce162c8e165 ./vicfa.Hedin2.gnm1.ann1.PTNK.mrna.fna.gz.gzi 241a845b736c0950a6addc0aa82b3416 ./vicfa.Hedin2.gnm1.ann1.PTNK.cds.fna.gz a239d8704bd4571f5840d283d1d1ccfb ./vicfa.Hedin2.gnm1.ann1.PTNK.mrna_primary.fna.gz.gzi -c82666bcb9068b0061c6b16593bf506b ./vicfa.Hedin2.gnm1.ann1.PTNK.gene_models_main.gff3.gz.csi +a809fc8da7160f932c9643ad5ebaae8f ./vicfa.Hedin2.gnm1.ann1.PTNK.gene_models_main.gff3.gz.csi e3840a76af604c9dc180a6d45ee80c2f ./vicfa.Hedin2.gnm1.ann1.PTNK.protein.faa.gz.gzi 19bcf6687c08f7c6cde59ccc196edec1 ./BUSCO/vicfa.Hedin2.gnm1.ann1.PTNK.busco.fabales_odb10.full_table.tsv.gz 55d80f6c60ddd38886f03e1f8068b585 ./BUSCO/vicfa.Hedin2.gnm1.ann1.PTNK.busco.fabales_odb10.short_summary.txt From a6690bebc178b816dbbae0954f38766f99304d1f Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Tue, 15 Aug 2023 11:30:01 -0500 Subject: [PATCH 14/57] fixed https://github.com/legumeinfo/datastore-issues/issues/176, similar to https://github.com/legumeinfo/datastore-issues/issues/175 --- .../CHECKSUM.Tiffany.gnm1.ann1.Y54X.md5 | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X/CHECKSUM.Tiffany.gnm1.ann1.Y54X.md5 b/Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X/CHECKSUM.Tiffany.gnm1.ann1.Y54X.md5 index 93599245..a8c08ad6 100644 --- a/Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X/CHECKSUM.Tiffany.gnm1.ann1.Y54X.md5 +++ b/Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X/CHECKSUM.Tiffany.gnm1.ann1.Y54X.md5 @@ -1,6 +1,7 @@ 5d64dafc31f941316c369308405597aa ./vicfa.Tiffany.gnm1.ann1.Y54X.mrna.fna.gz -3fe95373b6310b1808739fe6a91cffa9 ./CHANGES.Tiffany.gnm1.ann1.Y54X.txt -08513297aceafd1a5c19d3b9a95949d1 ./vicfa.Tiffany.gnm1.ann1.Y54X.gene_models_main.gff3.gz.csi +2f8f74c76c3fd0dc79316ecd5c97eb6a ./feature_id_remapping.txt +3cfe003d4241ac602af103214b4f7462 ./CHANGES.Tiffany.gnm1.ann1.Y54X.txt +f48297886db1c03aa6cbdb95f2163089 ./vicfa.Tiffany.gnm1.ann1.Y54X.gene_models_main.gff3.gz.csi ce3c2af78e4170a520cccee5c4f892ec ./vicfa.Tiffany.gnm1.ann1.Y54X.protein.faa.gz.fai 9054330b4630476772fa344547376e4e ./vicfa.Tiffany.gnm1.ann1.Y54X.mrna.fna.gz.fai ae6e86adc0f460bfda1889b38ce5555e ./vicfa.Tiffany.gnm1.ann1.Y54X.cds.bed.gz @@ -25,7 +26,7 @@ b251311e1cd4126208fa0e3a0a01a5b7 ./vicfa.Tiffany.gnm1.ann1.Y54X.mrna_primary.fn c939385f3256143f2d85019e61bf4570 ./vicfa.Tiffany.gnm1.ann1.Y54X.protein_primary.faa.gz.fai cbec26921247cc007934786d2812391f ./vicfa.Tiffany.gnm1.ann1.Y54X.protein.faa.gz.gzi 1bc0e9ac83d5c414e37f08553381b6ab ./vicfa.Tiffany.gnm1.ann1.Y54X.mrna.fna.gz.gzi -173186a1bce4d8b89ae0e9a60c988d5e ./vicfa.Tiffany.gnm1.ann1.Y54X.gene_models_main.gff3.gz +c24c70784b99c328a679bf3e7e50c231 ./vicfa.Tiffany.gnm1.ann1.Y54X.gene_models_main.gff3.gz e0cf6b18491d7ba3095020c345dc66bb ./MANIFEST.Tiffany.gnm1.ann1.Y54X.descriptions.yml 7517242099c510ee057cef25091fbfdf ./vicfa.Tiffany.gnm1.ann1.Y54X.legfed_v1_0.M65K.gfa.tsv.gz d617d23e2fcf782bafe78344ce4fdf39 ./vicfa.Tiffany.gnm1.ann1.Y54X.cds.fna.gz From 3618ec2746140affff47a58b1fa3e8569312a42a Mon Sep 17 00:00:00 2001 From: sdash Date: Tue, 15 Aug 2023 12:44:18 -0500 Subject: [PATCH 15/57] Checksum update after alignments Tiff.gnm2-gnm1,Bailey,Fuhu,Shito added. --- .../CHECKSUM.Tifrunner.gnm2.wga.DWM1.md5 | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/Arachis/hypogaea/genome_alignments/Tifrunner.gnm2.wga.DWM1/CHECKSUM.Tifrunner.gnm2.wga.DWM1.md5 b/Arachis/hypogaea/genome_alignments/Tifrunner.gnm2.wga.DWM1/CHECKSUM.Tifrunner.gnm2.wga.DWM1.md5 index 7999ee01..1298714f 100644 --- a/Arachis/hypogaea/genome_alignments/Tifrunner.gnm2.wga.DWM1/CHECKSUM.Tifrunner.gnm2.wga.DWM1.md5 +++ b/Arachis/hypogaea/genome_alignments/Tifrunner.gnm2.wga.DWM1/CHECKSUM.Tifrunner.gnm2.wga.DWM1.md5 @@ -1,6 +1,18 @@ 06da50bbec61307fa9edac6a6d4f8824 ./arahy.Tifrunner.gnm2.x.aradu.V14167.gnm2.DWM1.paf.gz +5beb3bc3b0cf2cb6a61bcbbf2743ea53 ./arahy.Tifrunner.gnm2.x.arahy.Shitouqi.gnm1.DWM1.bam.bai eba757ee348b93024e91f332dc1aa4bb ./arahy.Tifrunner.gnm2.x.aradu.V14167.gnm2.DWM1.bam.bai +291b23694dc0ab9b876217bc12668dc5 ./arahy.Tifrunner.gnm2.x.arahy.Shitouqi.gnm1.DWM1.paf.gz +d22ff4afd607e375700d16323368f973 ./arahy.Tifrunner.gnm2.x.arahy.Fuhuasheng.gnm1.DWM1.bam 216831c7f5edb63693449f62b55430b1 ./arahy.Tifrunner.gnm2.x.araip.K30076.gnm2.DWM1.paf.gz +4d2409851aab8343f4ca163aaf63c26f ./arahy.Tifrunner.gnm2.x.arahy.Tifrunner.gnm1.DWM1.paf.gz +7cc03fd899142da156b05bc4a48e3ce8 ./arahy.Tifrunner.gnm2.x.arahy.BaileyII.gnm1.DWM1.bam.bai +e6f3dfea6c0c095bd3c4e93ac567dc8b ./arahy.Tifrunner.gnm2.x.arahy.BaileyII.gnm1.DWM1.paf.gz +df97931fa9f7b2677423aab3ec64da84 ./arahy.Tifrunner.gnm2.x.arahy.Tifrunner.gnm1.DWM1.bam +29186723412a1614ee0f43a89eacf6a7 ./arahy.Tifrunner.gnm2.x.arahy.Tifrunner.gnm1.DWM1.bam.bai +cac6f231daf661f27811bb72bc251383 ./arahy.Tifrunner.gnm2.x.arahy.BaileyII.gnm1.DWM1.bam +2584ee2be10ed22958a2893381603d7b ./arahy.Tifrunner.gnm2.x.arahy.Shitouqi.gnm1.DWM1.bam 7287ec3eb43d36e5d19158a53fc31bb7 ./arahy.Tifrunner.gnm2.x.araip.K30076.gnm2.DWM1.bam.bai +45377792051cb9c4bd2a42ed0c43128d ./arahy.Tifrunner.gnm2.x.arahy.Fuhuasheng.gnm1.DWM1.paf.gz +57dd28fef76ec57b3ea1d5df98e5098d ./arahy.Tifrunner.gnm2.x.arahy.Fuhuasheng.gnm1.DWM1.bam.bai 5cc2a29119b2dbfa2dbd8cfd1e48f98e ./arahy.Tifrunner.gnm2.x.aradu.V14167.gnm2.DWM1.bam 01c41bb9fbbc9b59e3d5ea4e491c07d8 ./arahy.Tifrunner.gnm2.x.araip.K30076.gnm2.DWM1.bam From 2b4a3ef69bb7be6c93af90754db027f9b4a22afa Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Tue, 22 Aug 2023 18:05:21 -0500 Subject: [PATCH 16/57] Vicia genus metadata --- .../about_this_collection/description_Vicia.yml | 16 ++++++++++++++++ 1 file changed, 16 insertions(+) create mode 100644 Vicia/GENUS/about_this_collection/description_Vicia.yml diff --git a/Vicia/GENUS/about_this_collection/description_Vicia.yml b/Vicia/GENUS/about_this_collection/description_Vicia.yml new file mode 100644 index 00000000..90ce74e9 --- /dev/null +++ b/Vicia/GENUS/about_this_collection/description_Vicia.yml @@ -0,0 +1,16 @@ +--- +taxid: 3904 +genus: Vicia +commonName: vetches +description: "Vicia is a genus in the legume family comprised of over 240 species, commonly known as vetches. The genus includes bitter vetch (Vicia ervilia), one of the earliest domesticated crop species, and broadbean (Vicia faba). Member species are native to Europe, North America, South America, Asia and Africa." + +species: + - faba + +resources: + - name: Genome Context Viewer + URL: "https://gcv.legumeinfo.org/gene;lis=vicfa.Hedin2.gnm1.ann1.4g051440" + description: "Browser for dynamically discovering and viewing genomic synteny across selected species." + - name: Germplasm GIS + URL: "https://germplasm-map.legumeinfo.org/#?zoom=3&maxRecs=200&taxonQuery=Vicia&traitScale=global&geocodedOnly=false&traitExcludeUnchar=false&limitToMapExtent=false&lat=38.33&lng=28.41&mapHeight=188&baseMap=ESRI%20-%20NatGeo%20(default,%20reference%20map)&ne_lat=50.10868962134672&ne_lng=153.91845703125&sw_lat=24.27012711798097&sw_lng=-97.09716796875001&accessionIdsInclusive=false&traitOverlay=&country=" + description: "Geographic information system viewer, showing collection locations for Vicia data held by the U.S. National Plant Germplasm System." From 21e30c32c5bfaf06e54c66ebb51f27173188e513 Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Tue, 22 Aug 2023 18:13:24 -0500 Subject: [PATCH 17/57] genus metadata Lablab --- .../about_this_collection/description_Lablab.yml | 13 +++++++++++++ 1 file changed, 13 insertions(+) create mode 100644 Lablab/GENUS/about_this_collection/description_Lablab.yml diff --git a/Lablab/GENUS/about_this_collection/description_Lablab.yml b/Lablab/GENUS/about_this_collection/description_Lablab.yml new file mode 100644 index 00000000..f6f19261 --- /dev/null +++ b/Lablab/GENUS/about_this_collection/description_Lablab.yml @@ -0,0 +1,13 @@ +--- +taxid: 271790 +genus: Lablab +commonName: Lablab +description: "A monotypic genus containing only the hyacinth bean (Lablab purpureus, native to Africa and cultivated throughout the tropics as a food crop." + +species: + - purpureus + +resources: + - name: Genome Context Viewer + URL: "https://gcv.legumeinfo.org/gene;lis=labpu.Highworth.gnm1.ann1.Labpu01g00200" + description: "Browser for dynamically discovering and viewing genomic synteny across selected species." From fb4b3af2adbd97774ff6380490b7dd41480674a4 Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Wed, 23 Aug 2023 10:22:39 -0500 Subject: [PATCH 18/57] added subterraneum to species list --- Trifolium/GENUS/about_this_collection/description_Trifolium.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/Trifolium/GENUS/about_this_collection/description_Trifolium.yml b/Trifolium/GENUS/about_this_collection/description_Trifolium.yml index 3c8441a2..eebc4b58 100644 --- a/Trifolium/GENUS/about_this_collection/description_Trifolium.yml +++ b/Trifolium/GENUS/about_this_collection/description_Trifolium.yml @@ -6,3 +6,4 @@ description: "Clover or trefoil are common names for plants of the genus Trifoli species: - pratense + - subterraneum From 3446fad174c78862ee744f0f518affbf0fc9ebe6 Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Mon, 11 Sep 2023 16:26:29 -0500 Subject: [PATCH 19/57] updates following the re-instating ofr some gene models from the low quality pile into the regular pile --- ...VFB.busco.fabales_odb10.short_summary.json | 12 ++-- .../CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 | 68 ++++++++++--------- 2 files changed, 42 insertions(+), 38 deletions(-) diff --git a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.short_summary.json b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.short_summary.json index 1cbe5ef3..b49b8a39 100644 --- a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.short_summary.json +++ b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.short_summary.json @@ -16,7 +16,7 @@ "use_augustus": "False", "batch_mode": "False", "tar": "False", - "in": "/busco_wd/run_busco.bash.jOwhnC/arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa", + "in": "/busco_wd/run_busco.bash.8iNV2m/arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa", "out": "BUSCO_proteins_fabales_odb10", "mode": "proteins", "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", @@ -35,12 +35,12 @@ "busco": "5.4.3" }, "results": { - "one_line_summary": "C:96.8%[S:4.9%,D:91.9%],F:0.2%,M:3.0%,n:5366", - "Complete": 96.8, - "Single copy": 4.9, - "Multi copy": 91.9, + "one_line_summary": "C:98.0%[S:5.1%,D:92.9%],F:0.2%,M:1.8%,n:5366", + "Complete": 98.0, + "Single copy": 5.1, + "Multi copy": 92.9, "Fragmented": 0.2, - "Missing": 3.0, + "Missing": 1.8, "n_markers": 5366, "domain": "eukaryota" } diff --git a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 index b0ee3fcb..2788a12f 100644 --- a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 +++ b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 @@ -1,35 +1,39 @@ -75490dfacc4941c19a97bab9b134aca3 ./CHANGES.Tifrunner.gnm2.ann2.PVFB.txt -18eead971beca08fd69c2d069c7ba464 ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna.fna.gz.gzi -d23219fb93ac1034be0dfb035afc9ed1 ./BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.short_summary.json -ab7fc0ace313fb4d188770cfce7c3b39 ./BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.full_table.tsv.gz -6f3e11f3304c43d88cc4cf930901eeef ./BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.short_summary.txt -93e755b4cf456b05b19a1009d171fb10 ./arahy.Tifrunner.gnm2.ann2.PVFB.cds.fna.gz.fai -526963a6f12662d09551014d6a8c07e9 ./arahy.Tifrunner.gnm2.ann2.PVFB.iprscan.gff3.gz.tbi -27075bfb7eb123f9e5afdd6f8f66bf2d ./arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz.gzi -26cbf2ba24c6ee8fc5f66eabd7913f37 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz -24d4a597222f9fa7c826861665dd06fe ./arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa.gz.gzi +0ff63f981b328fd531d77776ba825d62 ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.gff3.gz +a24e1751710154b1536b8edb8e458656 ./arahy.Tifrunner.gnm2.ann2.PVFB.cds.fna.gz.fai +9e1bf4bc9cbf4d6a07b4a6bb367468ae ./arahy.Tifrunner.gnm2.ann2.PVFB.iprscan.gff3.gz +709872fc2910431b1e8b7074bfe38c67 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.fna.gz +b78de65b05bc80a5cb7264ad13b2ec3c ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna_lowqual.fna.gz.fai +ae47baad0a228ba413944965af18e073 ./arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz.gzi 43319e3bff849f45a6a12880e986e4e0 ./README.Tifrunner.gnm2.ann2.PVFB.yml -4ee031b63aaeef0d8d7040cdf6f143dd ./arahy.Tifrunner.gnm2.ann2.PVFB.cds.bed.gz -0ec9e84c912dca5d713d6a8fd954162b ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna_lowqual.fna.gz.fai +e1d0a1c3ed6ba6803d83d2ec1d3ef89e ./arahy.Tifrunner.gnm2.ann2.PVFB.cds.fna.gz +f01eeb8191925d71424ddc48dd9e6cf3 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa.gz.gzi +0e2fba5a5720f384b8119b658e7178da ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna_lowqual.fna.gz +773fe4fc96ceb3569e5b7eb14c291a04 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz.fai +3621003e797ac7011738e451848d2acd ./arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz +d17728cc393fd58f1121dca958034063 ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna.fna.gz.fai +2f5ff665bfbf1618be0c469b51759ef5 ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_lowqual.bed.gz +646fe6c6b0921f6ef804eb227a87cedd ./CHANGES.Tifrunner.gnm2.ann2.PVFB.txt +86aa9c488206a4fff4cd9d24a918d247 ./arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz 683c05e2e08c2132a18832a80185107c ./MANIFEST.Tifrunner.gnm2.ann2.PVFB.descriptions.yml -57bf25acc50fe290ff721d6c7b8183d4 ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.gff3.gz.tbi -ccb2b2fbfed32822d38fe10073afbd2e ./arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz.gzi -10d0884001bf224b6f0615418e33f940 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz.fai 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-fbd4184ba94d6ec1b67866872fb57d79 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa.gz -5c903df158e6613d1143547abaccec45 ./arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz.fai +a90461b9c01b6e87ec08a8a0b2b583db ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.bed.gz +0eda55ea32630283e27634e228c54a2e ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna.fna.gz.gzi +709872fc2910431b1e8b7074bfe38c67 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein.fna.gz +df4085fb64f6de082c7b754ee391029b ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_lowqual.gff3.gz.tbi +27f1299574992abeec3c2bd59c10cdac ./arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz.gzi d33ed45b5d9ac633cbda2ce7534caa8b ./arahy.Tifrunner.gnm2.ann2.PVFB.featid_map.tsv.gz -7887cbb16f52d675dcf768d04b4a48b4 ./arahy.Tifrunner.gnm2.ann2.PVFB.cds.fna.gz.gzi -62b99e0504b9108d09d0bb1e4578fa74 ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna.fna.gz.fai -932a94b79b68c297ebaf39915e36801d ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.gff3.gz -346bef0e9f69f4aecd98d4c99b1e4965 ./arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz +b21a21082fce168ebf72bcc22c03e93f ./arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz.fai +9edc022a4e9894054e2d37f123eaad7b ./arahy.Tifrunner.gnm2.ann2.PVFB.legfed_v1_0.M65K.gfa.tsv.gz +3f1774a04664c6535c4c1af4d2c41ba4 ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna_lowqual.fna.gz.gzi +f8874af162a950fc0742382c7ab46498 ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.bed.gz.tbi +a2d800f1a63197a074d280952910ed56 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa.gz.fai +fe280da9fa60287ffc3af209f38ef96f ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.gff3.gz.tbi +d4d3c22f533a3805056949bf31b97016 ./BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.short_summary.json +dd178b9401c214e445db7fa997db60b4 ./BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.full_table.tsv.gz +77d2ebeaaf850c63eade93bd8931b5c8 ./BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.short_summary.txt +11b02e1c204ab27610e95078f8b6bc7b ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna.fna.gz +1dec423f22ba8c8badb72f0f7edf9621 ./arahy.Tifrunner.gnm2.ann2.PVFB.cds.fna.gz.gzi +58a74a0f455a1f868ce1a08e5391bc79 ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_lowqual.bed.gz.tbi +22a4e77f70e3777b035c12d05e20fde7 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa.gz +526963a6f12662d09551014d6a8c07e9 ./arahy.Tifrunner.gnm2.ann2.PVFB.iprscan.gff3.gz.tbi +c77e88ff69a20fdef11231b1a6541971 ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_lowqual.gff3.gz +6c0f0d5f7ecec19da1cc174d378cce02 ./MANIFEST.Tifrunner.gnm2.ann2.PVFB.correspondence.yml From 6570b173011776a9231697aa1a076c53e5ad648b Mon Sep 17 00:00:00 2001 From: Steven Cannon Date: Sun, 17 Sep 2023 19:05:37 -0500 Subject: [PATCH 20/57] Updated description_Glycine_max.yml with accession JD17/Jidou 17 --- .../max/about_this_collection/description_Glycine_max.yml | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/Glycine/max/about_this_collection/description_Glycine_max.yml b/Glycine/max/about_this_collection/description_Glycine_max.yml index 25c4ddc4..b7336b11 100644 --- a/Glycine/max/about_this_collection/description_Glycine_max.yml +++ b/Glycine/max/about_this_collection/description_Glycine_max.yml @@ -58,6 +58,12 @@ strains: name: Hwangkeum origin: South Korea description: "Hwangkeum is an important South Korean cultivar, released in 1979 and widely used since then as a breeding parent in Korea. Hwangkeum has a determinate growth habit and nonshattering pods and is adapted to the middle Korean peninsula (Maturity Group V)." + - identifier: JD17 + accession: GCA_021733175.1 + accession_group: Reference - Jidou 17 + name: Jidou 17 + origin: China + description: "Jidou 17 is an Chinese elite cultivar, widely grown in central China (in maturity group III). This variety is recognized for high yields and tolerance for high planting densities." - identifier: Hefeng25_IGA1002 accession: IGA1002 accession_group: Chu, Peng et al., 2021 From 31f2c078039a0c94d8f7ea1f5c93b0edddf4a35e Mon Sep 17 00:00:00 2001 From: Steven Cannon Date: Sun, 17 Sep 2023 19:07:26 -0500 Subject: [PATCH 21/57] Added new pangene sets for Arachis, Cicer, Glycine, Medicago, Phaseolus, and Vigna --- .../README.Arachis.pan2.5P1K.yml | 41 +++++++++ .../README.Cicer.pan2.CMWZ.yml | 41 +++++++++ .../README.Glycine.pan4.RK4P.yml | 88 +++++++++++++++++++ ...LFP.busco.fabales_odb10.short_summary.json | 47 ++++++++++ .../README.JD17.gnm1.ann1.CLFP.yml | 46 ++++++++++ .../README.Medicago.pan2.451K.yml | 58 ++++++++++++ .../README.Phaseolus.pan2.G5HV.yml | 43 +++++++++ .../README.Vigna.pan2.MQQM.yml | 47 ++++++++++ 8 files changed, 411 insertions(+) create mode 100644 Arachis/GENUS/pangenes/Arachis.pan2.5P1K/README.Arachis.pan2.5P1K.yml create mode 100644 Cicer/GENUS/pangenes/Cicer.pan2.CMWZ/README.Cicer.pan2.CMWZ.yml create mode 100644 Glycine/GENUS/pangenes/Glycine.pan4.RK4P/README.Glycine.pan4.RK4P.yml create mode 100644 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/BUSCO/glyma.JD17.gnm1.ann1.CLFP.busco.fabales_odb10.short_summary.json create mode 100644 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/README.JD17.gnm1.ann1.CLFP.yml create mode 100644 Medicago/GENUS/pangenes/Medicago.pan2.451K/README.Medicago.pan2.451K.yml create mode 100644 Phaseolus/GENUS/pangenes/Phaseolus.pan2.G5HV/README.Phaseolus.pan2.G5HV.yml create mode 100644 Vigna/GENUS/pangenes/Vigna.pan2.MQQM/README.Vigna.pan2.MQQM.yml diff --git a/Arachis/GENUS/pangenes/Arachis.pan2.5P1K/README.Arachis.pan2.5P1K.yml b/Arachis/GENUS/pangenes/Arachis.pan2.5P1K/README.Arachis.pan2.5P1K.yml new file mode 100644 index 00000000..37501ac1 --- /dev/null +++ b/Arachis/GENUS/pangenes/Arachis.pan2.5P1K/README.Arachis.pan2.5P1K.yml @@ -0,0 +1,41 @@ +--- +identifier: Arachis.pan2.5P1K + +provenance: "The files in this directory are a product of the staff of the LegumeInfo, PeanutBase, and SoyBase project teams. The method is described here: https://github.com/legumeinfo/pandagma" + +source: "https://data.legumeinfo.org" + +synopsis: "Pangene set for Arachis species, based on A. hypogaea, A. duranensis, and A. ipaensis. This pangene set includes four annotation sets from A. hypogaea and one each from A. duranensis and A. ipaensis." + +scientific_name: Arachis + +taxid: 3826 + +annotations_main: + - arahy.BaileyII.gnm1.ann1 + - arahy.Tifrunner.gnm1.ann2 + - arahy.Tifrunner.gnm2.ann1 + - arahy.Tifrunner.gnm2.ann2 + +annotations_extra: + - aradu.V14167.gnm1.ann1 + - araip.K30076.gnm1.ann1 + +description: "Pan-gene set for Arachis species, spanning 3 species and 6 annotation sets, calculated using the pandagma pipeline, version 2023-09-15" + +original_file_creation_date: "2023-09-15" + +local_file_creation_date: "2023-09-15" + +dataset_release_date: "2023-09-15" + +contributors: The International Peanut Genome Initiative and authors of all constituent genomes and annotations + +data_curators: Steven Cannon, Andrew Farmer + +public_access_level: public + +license: Open + +keywords: Arachis, peanut, pan-gene, pangene, orthogroup + diff --git a/Cicer/GENUS/pangenes/Cicer.pan2.CMWZ/README.Cicer.pan2.CMWZ.yml b/Cicer/GENUS/pangenes/Cicer.pan2.CMWZ/README.Cicer.pan2.CMWZ.yml new file mode 100644 index 00000000..fdea3243 --- /dev/null +++ b/Cicer/GENUS/pangenes/Cicer.pan2.CMWZ/README.Cicer.pan2.CMWZ.yml @@ -0,0 +1,41 @@ +--- +identifier: Cicer.pan2.CMWZ + +provenance: "The files in this directory are a product of the staff of the SoyBase and LegumeInfo project teams. The method is described here: https://github.com/legumeinfo/pandagma" + +source: "https://data.legumeinfo.org" + +synopsis: "Pangene set for Cicer species, based on C. arietinum, C. echinospermum, and reticulatum. This pangene set includes 12 annotation sets." + +scientific_name: Cicer + +taxid: 3826 + +annotations_main: + - cicar.CDCFrontier.gnm3.ann1 + - cicar.ICC4958.gnm2.ann1 + - cicec.S2Drd065.gnm1.ann1 + - cicre.Besev079.gnm1.ann1 + +annotations_extra: + - cicar.CDCFrontier.gnm1.ann1 + - cicar.CDCFrontier.gnm2.ann1 + +description: "Pan-gene set for Cicer species, spanning 3 species and 6 annotation sets, calculated using the pandagma pipeline, version 2023-09-15" + +original_file_creation_date: "2023-09-15" + +local_file_creation_date: "2023-09-15" + +dataset_release_date: "2023-09-15" + +contributors: Steven Cannon, Hyunoh Lee + +data_curators: Steven Cannon + +public_access_level: public + +license: Open + +keywords: Cicer, chickpea, pan-gene, pangene, orthogroup + diff --git a/Glycine/GENUS/pangenes/Glycine.pan4.RK4P/README.Glycine.pan4.RK4P.yml b/Glycine/GENUS/pangenes/Glycine.pan4.RK4P/README.Glycine.pan4.RK4P.yml new file mode 100644 index 00000000..d5e4494a --- /dev/null +++ b/Glycine/GENUS/pangenes/Glycine.pan4.RK4P/README.Glycine.pan4.RK4P.yml @@ -0,0 +1,88 @@ +--- +identifier: Glycine.pan4.RK4P + +provenance: "The files in this directory are a product of the staff of the SoyBase and LegumeInfo project teams. The method is described here: https://github.com/legumeinfo/pandagma" + +source: "https://data.legumeinfo.org" + +synopsis: "Pangene set for Glycine species, based on G. max and G. soja but also including 6 perennial Australian species by homology. This pangene set includes 51 Glycine annotation sets." + +scientific_name: Glycine + +taxid: 3846 + +annotations_main: + - glyma.FiskebyIII.gnm1.ann1 + - glyma.Hefeng25_IGA1002.gnm1.ann1 + - glyma.Huaxia3_IGA1007.gnm1.ann1 + - glyma.JD17.gnm1.ann1 + - glyma.Jinyuan_IGA1006.gnm1.ann1 + - glyma.Lee.gnm1.ann1 + - glyma.Lee.gnm2.ann1 + - glyma.Wenfeng7_IGA1001.gnm1.ann1 + - glyma.Wm82.gnm2.ann1 + - glyma.Wm82.gnm4.ann1 + - glyma.Wm82_IGA1008.gnm1.ann1 + - glyma.Wm82_ISU01.gnm2.ann1 + - glyma.Zh13.gnm1.ann1 + - glyma.Zh13_IGA1005.gnm1.ann1 + - glyma.Zh35_IGA1004.gnm1.ann1 + - glyso.F_IGA1003.gnm1.ann1 + - glyso.PI483463.gnm1.ann1 + - glyso.W05.gnm1.ann1 + +annotations_extra: + - glycy.G1267.gnm1.ann1 + - glyd3.G1403.gnm1.ann1 + - glydo.G1134.gnm1.ann1 + - glyfa.G1718.gnm1.ann1 + - glyma.58-161.gnm1.ann1 + - glyma.Amsoy.gnm1.ann1 + - glyma.DongNongNo_50.gnm1.ann1 + - glyma.FengDiHuang.gnm1.ann1 + - glyma.HanDouNo_5.gnm1.ann1 + - glyma.HeiHeNo_43.gnm1.ann1 + - glyma.Hwangkeum.gnm1.ann1 + - glyma.JiDouNo_17.gnm1.ann1 + - glyma.JinDouNo_23.gnm1.ann1 + - glyma.JuXuanNo_23.gnm1.ann1 + - glyma.KeShanNo_1.gnm1.ann1 + - glyma.PI_398296.gnm1.ann1 + - glyma.PI_548362.gnm1.ann1 + - glyma.QiHuangNo_34.gnm1.ann1 + - glyma.ShiShengChangYe.gnm1.ann1 + - glyma.TieFengNo_18.gnm1.ann1 + - glyma.TieJiaSiLiHuang.gnm1.ann1 + - glyma.TongShanTianEDan.gnm1.ann1 + - glyma.WanDouNo_28.gnm1.ann1 + - glyma.Wm82.gnm1.ann1 + - glyma.XuDouNo_1.gnm1.ann1 + - glyma.YuDouNo_22.gnm1.ann1 + - glyma.Zh13.gnm2.ann1 + - glyma.ZhangChunManCangJin.gnm1.ann1 + - glyma.Zhutwinning2.gnm1.ann1 + - glyma.ZiHuaNo_4.gnm1.ann1 + - glyso.PI_549046.gnm1.ann1 + - glyso.PI_562565.gnm1.ann1 + - glyso.PI_578357.gnm1.ann1 + - glyst.G1974.gnm1.ann1 + - glysy.G1300.gnm1.ann1 + +description: "Pan-gene set for Glycine species, spanning 8 species and 51 annotation sets, calculated using the pandagma pipeline, version 2023-09-15" + +original_file_creation_date: "2023-09-15" + +local_file_creation_date: "2023-09-15" + +dataset_release_date: "2023-09-15" + +contributors: Steven Cannon, Hyunoh Lee + +data_curators: Steven Cannon + +public_access_level: public + +license: Open + +keywords: soybean, Glycine, pan-gene, pangene, orthogroup + diff --git a/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/BUSCO/glyma.JD17.gnm1.ann1.CLFP.busco.fabales_odb10.short_summary.json b/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/BUSCO/glyma.JD17.gnm1.ann1.CLFP.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..d62ac9c1 --- /dev/null +++ b/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/BUSCO/glyma.JD17.gnm1.ann1.CLFP.busco.fabales_odb10.short_summary.json @@ -0,0 +1,47 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.eJGvNt/glyma.JD17.gnm1.ann1.CLFP.protein_primary.faa", + "out": "BUSCO_proteins_fabales_odb10", + "mode": "proteins", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_proteins_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:98.5%[S:39.0%,D:59.5%],F:0.3%,M:1.2%,n:5366", + "Complete": 98.5, + "Single copy": 39.0, + "Multi copy": 59.5, + "Fragmented": 0.3, + "Missing": 1.2, + "n_markers": 5366, + "domain": "eukaryota" + } +} \ No newline at end of file diff --git a/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/README.JD17.gnm1.ann1.CLFP.yml b/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/README.JD17.gnm1.ann1.CLFP.yml new file mode 100644 index 00000000..661da118 --- /dev/null +++ b/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/README.JD17.gnm1.ann1.CLFP.yml @@ -0,0 +1,46 @@ +--- +identifier: JD17.gnm1.ann1.CLFP + +provenance: "The files in this directory originated from https://doi.org/10.25387/g3.17065499, with the assembly corresponding to the one at GenBank under accession GCA_021733175.1. Those two repositories are considered the primary and authoritative for this data; files in this present directory are derived, and may have changes, as noted below. The files here are held as part of the LegumeInfo and SoyBase projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo and SoyBase projects. If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please respect any usage restrictions in the present and original repositories, and cite the data appropriately." + +source: "https://doi.org/10.25387/g3.17065499" + +synopsis: "Annotation 1 for Glycine max accession Jidou 17 (JD17), genome assembly 1" + +scientific_name: Glycine max + +taxid: 3847 + +genotype: + - JD17 + +chromosome_prefix: Chr + +supercontig_prefix: PGA_scaffold + +description: "Gene annotation resources. See full description at Yi, Liu et al., 2020" + +genbank_accession: GCA_021733175.1 + +original_file_creation_date: "2022-02-03" + +local_file_creation_date: "2023-08-29" + +dataset_release_date: "2023-10-01" + +publication_doi: 10.1093/g3journal/jkac017 + +publication_title: "Genome assembly of the JD17 soybean provides a new reference genome for comparative genomics" + +contributors: Yi X, Liu J, Chen S, Wu H, Liu M, Xu Q, Lei L, Lee S, Zhang B, Kudrna D, Fan W, Wing RA, Wang X, Zhang M, Zhang J, Yang C, Chen N. + +citation: "Yi X, Liu J, Chen S, Wu H, Liu M, Xu Q, Lei L, Lee S, Zhang B, Kudrna D, Fan W, Wing RA, Wang X, Zhang M, Zhang J, Yang C, Chen N. Genome assembly of the JD17 soybean provides a new reference genome for comparative genomics. G3 (Bethesda). 2022 Apr 4;12(4):jkac017. doi: 10.1093/g3journal/jkac017. PMID: 35188189; PMCID: PMC8982393." + +data_curators: Steven Cannon + +public_access_level: public + +license: Open, with usage agreement + +keywords: soybean, JD17, Jidou 17 + diff --git a/Medicago/GENUS/pangenes/Medicago.pan2.451K/README.Medicago.pan2.451K.yml b/Medicago/GENUS/pangenes/Medicago.pan2.451K/README.Medicago.pan2.451K.yml new file mode 100644 index 00000000..4afe5518 --- /dev/null +++ b/Medicago/GENUS/pangenes/Medicago.pan2.451K/README.Medicago.pan2.451K.yml @@ -0,0 +1,58 @@ +--- +identifier: Medicago.pan2.451K + +provenance: "The files in this directory are a product of the staff of the SoyBase and LegumeInfo project teams. The method is described here: https://github.com/legumeinfo/pandagma" + +source: "https://data.legumeinfo.org" + +synopsis: "Pangene set for Medicago species, based primarily on M. truncatula but also including M. sativa. This pangene set includes 19 annotation sets." + +scientific_name: Medicago + +taxid: 3877 + +annotations_main: + - medsa.XinJiangDaYe_1.gnm1.ann1 + - medsa.XinJiangDaYe_2.gnm1.ann1 + - medsa.XinJiangDaYe_3.gnm1.ann1 + - medsa.XinJiangDaYe_4.gnm1.ann1 + - medtr.A17_HM341.gnm4.ann2 + - medtr.A17.gnm5.ann1_6 + - medtr.R108.gnmHiC_1.ann1 + +annotations_extra: + - medsa.XinJiangDaYe_sc.gnm1.ann1 + - medtr.HM004.gnm1.ann1 + - medtr.HM010.gnm1.ann1 + - medtr.HM022.gnm1.ann1 + - medtr.HM023.gnm1.ann1 + - medtr.HM034.gnm1.ann1 + - medtr.HM050.gnm1.ann1 + - medtr.HM056.gnm1.ann1 + - medtr.HM058.gnm1.ann1 + - medtr.HM060.gnm1.ann1 + - medtr.HM095.gnm1.ann1 + - medtr.HM125.gnm1.ann1 + - medtr.HM129.gnm1.ann1 + - medtr.HM185.gnm1.ann1 + - medtr.HM324.gnm1.ann1 + - medtr.R108_HM340.gnm1.ann1 + +description: "Pan-gene set for Medicago species, spanning 2 species and 19 annotation sets, calculated using the pandagma pipeline, version 2023-09-15" + +original_file_creation_date: "2023-09-15" + +local_file_creation_date: "2023-09-15" + +dataset_release_date: "2023-09-15" + +contributors: Steven Cannon, Hyunoh Lee + +data_curators: Steven Cannon + +public_access_level: public + +license: Open + +keywords: Medicago, barrel medic, alfalfa, lucerne, pan-gene, pangene, orthogroup + diff --git a/Phaseolus/GENUS/pangenes/Phaseolus.pan2.G5HV/README.Phaseolus.pan2.G5HV.yml b/Phaseolus/GENUS/pangenes/Phaseolus.pan2.G5HV/README.Phaseolus.pan2.G5HV.yml new file mode 100644 index 00000000..fc319d2d --- /dev/null +++ b/Phaseolus/GENUS/pangenes/Phaseolus.pan2.G5HV/README.Phaseolus.pan2.G5HV.yml @@ -0,0 +1,43 @@ +--- +identifier: Phaseolus.pan2.G5HV + +provenance: "The files in this directory are a product of the staff of the SoyBase and LegumeInfo project teams. The method is described here: https://github.com/legumeinfo/pandagma" + +source: "https://data.legumeinfo.org" + +synopsis: "Pangene set for Phaseolus species, based primarily on P. vulgaris but also including P. acutifolius and P. lunatus. This pangene set includes 8 annotation sets." + +scientific_name: Phaseolus + +taxid: 3883 + +annotations_main: + - phaac.Frijol_Bayo.gnm1.ann1 + - phaac.W6_15578.gnm2.ann1 + - phalu.G27455.gnm1.ann1 + - phavu.5-593.gnm1.ann1 + - phavu.G19833.gnm2.ann1 + - phavu.LaborOvalle.gnm1.ann1 + - phavu.UI111.gnm1.ann1 + +annotations_extra: + - phavu.G19833.gnm1.ann1 + +description: "Pan-gene set for Phaseolus species, spanning 3 species and 8 annotation sets, calculated using the pandagma pipeline, version 2023-09-15" + +original_file_creation_date: "2023-09-15" + +local_file_creation_date: "2023-09-15" + +dataset_release_date: "2023-09-15" + +contributors: Steven Cannon, Hyunoh Lee + +data_curators: Steven Cannon + +public_access_level: public + +license: Open + +keywords: Phaseolus, common bean, lima bean, pan-gene, pangene, orthogroup + diff --git a/Vigna/GENUS/pangenes/Vigna.pan2.MQQM/README.Vigna.pan2.MQQM.yml b/Vigna/GENUS/pangenes/Vigna.pan2.MQQM/README.Vigna.pan2.MQQM.yml new file mode 100644 index 00000000..6d8fa303 --- /dev/null +++ b/Vigna/GENUS/pangenes/Vigna.pan2.MQQM/README.Vigna.pan2.MQQM.yml @@ -0,0 +1,47 @@ +--- +identifier: Vigna.pan2.MQQM + +provenance: "The files in this directory are a product of the staff of the SoyBase and LegumeInfo project teams. The method is described here: https://github.com/legumeinfo/pandagma" + +source: "https://data.legumeinfo.org" + +synopsis: "Pangene set for Vigna species, based primarily on V. unguiculata but also including V. angularis and V. radiata. This pangene set includes 12 annotation sets." + +scientific_name: Vigna + +taxid: 3913 + +annotations_main: + - vigun.CB5-2.gnm1.ann1 + - vigun.IT97K-499-35.gnm1.ann2 + - vigun.Sanzi.gnm1.ann1 + - vigun.Suvita2.gnm1.ann1 + - vigun.TZ30.gnm1.ann2 + - vigun.UCR779.gnm1.ann1 + - vigun.ZN016.gnm1.ann2 + +annotations_extra: + - vigan.Gyeongwon.gnm3.ann1 + - vigan.Shumari.gnm1.ann1 + - vigra.VC1973A.gnm6.ann1 + - vigra.VC1973A.gnm7.ann1 + - vigun.IT97K-499-35.gnm1.ann1 + +description: "Pan-gene set for Vigna species, spanning 3 species and 12 annotation sets, calculated using the pandagma pipeline, version 2023-09-15" + +original_file_creation_date: "2023-09-15" + +local_file_creation_date: "2023-09-15" + +dataset_release_date: "2023-09-15" + +contributors: Steven Cannon, Hyunoh Lee + +data_curators: Steven Cannon + +public_access_level: public + +license: Open + +keywords: Vigna, cowpea, mung bean, pan-gene, pangene, orthogroup + From 2e34bc75e5711870c31fc103f17d658785be8dff Mon Sep 17 00:00:00 2001 From: Steven Cannon Date: Sun, 17 Sep 2023 19:18:37 -0500 Subject: [PATCH 22/57] Removed pangene collections for Arachis, Cicer, Glycine, Medicago, Phaseolus, and Vigna (they have been moved to the annex, since they have been replaced in the main DS with new versions) --- .../CHECKSUM.Arachis.pan1.4LN9.md5 | 23 ----- .../README.Arachis.pan1.4LN9.yml | 58 ------------ .../CHECKSUM.Cicer.pan1.SV8C.md5 | 19 ---- .../README.Cicer.pan1.SV8C.yml | 42 --------- .../CHECKSUM.Glycine.pan3.YWTW.md5 | 23 ----- .../README.Glycine.pan3.YWTW.yml | 88 ------------------- .../README.Medicago.pan1.XXQ6.yml | 59 ------------- .../CHECKSUM.Phaseolus.pan1.X2PC.md5 | 23 ----- .../README.Phaseolus.pan1.X2PC.yml | 44 ---------- .../CHECKSUM.Vigna.pan1.X2PC.md5 | 23 ----- .../README.Vigna.pan1.X2PC.yml | 48 ---------- 11 files changed, 450 deletions(-) delete mode 100644 Arachis/GENUS/pangenes/Arachis.pan1.4LN9/CHECKSUM.Arachis.pan1.4LN9.md5 delete mode 100644 Arachis/GENUS/pangenes/Arachis.pan1.4LN9/README.Arachis.pan1.4LN9.yml delete mode 100644 Cicer/GENUS/pangenes/Cicer.pan1.SV8C/CHECKSUM.Cicer.pan1.SV8C.md5 delete mode 100644 Cicer/GENUS/pangenes/Cicer.pan1.SV8C/README.Cicer.pan1.SV8C.yml delete mode 100644 Glycine/GENUS/pangenes/Glycine.pan3.YWTW/CHECKSUM.Glycine.pan3.YWTW.md5 delete mode 100644 Glycine/GENUS/pangenes/Glycine.pan3.YWTW/README.Glycine.pan3.YWTW.yml delete mode 100644 Medicago/GENUS/pangenes/Medicago.pan1.XXQ6/README.Medicago.pan1.XXQ6.yml delete mode 100644 Phaseolus/GENUS/pangenes/Phaseolus.pan1.X2PC/CHECKSUM.Phaseolus.pan1.X2PC.md5 delete mode 100644 Phaseolus/GENUS/pangenes/Phaseolus.pan1.X2PC/README.Phaseolus.pan1.X2PC.yml delete mode 100644 Vigna/GENUS/pangenes/Vigna.pan1.X2PC/CHECKSUM.Vigna.pan1.X2PC.md5 delete mode 100644 Vigna/GENUS/pangenes/Vigna.pan1.X2PC/README.Vigna.pan1.X2PC.yml diff --git a/Arachis/GENUS/pangenes/Arachis.pan1.4LN9/CHECKSUM.Arachis.pan1.4LN9.md5 b/Arachis/GENUS/pangenes/Arachis.pan1.4LN9/CHECKSUM.Arachis.pan1.4LN9.md5 deleted file mode 100644 index 62abf0d0..00000000 --- a/Arachis/GENUS/pangenes/Arachis.pan1.4LN9/CHECKSUM.Arachis.pan1.4LN9.md5 +++ /dev/null @@ -1,23 +0,0 @@ -7040e09887607c6bfb2b18bd75106c93 Arachis.pan1.4LN9.clust.tsv.gz -a39ce6c3ceb13dbeb35c819822671108 Arachis.pan1.4LN9.complement.fna.gz -41727c568820f1ce604c23004268b6f3 Arachis.pan1.4LN9.complement.fna.gz.fai -5f21dab001fd22378def85ec0b024f7d Arachis.pan1.4LN9.complement.fna.gz.gzi -a5519c3e3eefa907c4b1297c7d82f4d0 Arachis.pan1.4LN9.counts.tsv.gz -823ad0ed0e72f7f48138a5e54810318e Arachis.pan1.4LN9.hsh.tsv.gz -98557e9b5a8c76efe44e473119b9336d Arachis.pan1.4LN9.inclusive_cds.fna.gz -d3ac85ca21e6f16858af90d7a4da6fb8 Arachis.pan1.4LN9.inclusive_cds.fna.gz.fai -9cab04fab28f8cf0342a5a1e6d55a4dd Arachis.pan1.4LN9.inclusive_cds.fna.gz.gzi -8a50f59100cbd02077483c4ecf9e418e Arachis.pan1.4LN9.inclusive_protein.faa.gz -8b1778b926884a0c74cc6ed44fed0da6 Arachis.pan1.4LN9.inclusive_protein.faa.gz.fai -7969c6ed55299a47844de3037dbb0a1f Arachis.pan1.4LN9.inclusive_protein.faa.gz.gzi -7ff780d8fedd6f9a5b37583b061c407f Arachis.pan1.4LN9.pctl25_named_cds.fna.gz -485d5d711696c26277dbae813eb52311 Arachis.pan1.4LN9.pctl25_named_cds.fna.gz.fai -32171a836a0b698b994a54bdf8bc7984 Arachis.pan1.4LN9.pctl25_named_cds.fna.gz.gzi -b93aebacd19d996432f3e2bb720cc17d Arachis.pan1.4LN9.pctl25_named_protein.faa.gz -2debffb522a6a18a48789f0a08f17531 Arachis.pan1.4LN9.pctl25_named_protein.faa.gz.fai -73084fa0ca4f7574d759545290d1aa35 Arachis.pan1.4LN9.pctl25_named_protein.faa.gz.gzi -6577f35be2f9f150742cea4eeb31513f Arachis.pan1.4LN9.stats.txt -7f310488b672756442db03df37aa1162 CHANGES.Arachis.pan1.4LN9.txt -dae5230f2fe1dd91023cf8dca9a87a12 MANIFEST.Arachis.pan1.4LN9.correspondence.yml -d94f6a418eb79428ef8e667b1fabd0e6 MANIFEST.Arachis.pan1.4LN9.descriptions.yml -ff494af2db20f63b8a5526c06eecbcf7 README.Arachis.pan1.4LN9.yml diff --git a/Arachis/GENUS/pangenes/Arachis.pan1.4LN9/README.Arachis.pan1.4LN9.yml b/Arachis/GENUS/pangenes/Arachis.pan1.4LN9/README.Arachis.pan1.4LN9.yml deleted file mode 100644 index b8dc4ad0..00000000 --- a/Arachis/GENUS/pangenes/Arachis.pan1.4LN9/README.Arachis.pan1.4LN9.yml +++ /dev/null @@ -1,58 +0,0 @@ ---- -identifier: Arachis.pan1.4LN9 - -provenance: "The files in this directory are a product of the staff of the LegumeInfo, PeanutBase, and SoyBase project teams. The method is described here: https://github.com/legumeinfo/pandagma" - -source: "https://data.legumeinfo.org" - -synopsis: "Pangene set for Arachis species, based on A. hypogaea, A. duranensis, and A. ipaensis. This pangene set includes five annotation sets from A. hypogaea and one each from A. duranensis and A. ipaensis." - -scientific_name: Arachis - -scientific_name_abbrev: Arachis - -taxid: 3826 - -annotations_main: - - arahy.BaileyII.gnm1.ann1 - - arahy.Tifrunner.gnm1.ann1 - - arahy.Tifrunner.gnm1.ann2 - - arahy.Tifrunner.gnm2.ann1 - - arahy.Tifrunner.gnm2.ann2 - -annotations_extra: - - aradu.V14167.gnm1.ann1 - - araip.K30076.gnm1.ann1 - -description: "Pan-gene set for Arachis species, spanning 3 species and 6 annotation sets, calculated using the pandagma pipeline, version 2023-04-03" - -bioproject: - -sraproject: - -dataset_doi: - -genbank_accession: - -original_file_creation_date: "2023-04-03" - -local_file_creation_date: "2023-04-03" - -dataset_release_date: "2023-04-03" - -publication_doi: - -publication_title: - -contributors: The International Peanut Genome Initiative and authors of all constituent genomes and annotations - -citation: - -data_curators: Steven Cannon, Andrew Farmer - -public_access_level: public - -license: Open - -keywords: Arachis, peanut, pan-gene, pangene, orthogroup - diff --git a/Cicer/GENUS/pangenes/Cicer.pan1.SV8C/CHECKSUM.Cicer.pan1.SV8C.md5 b/Cicer/GENUS/pangenes/Cicer.pan1.SV8C/CHECKSUM.Cicer.pan1.SV8C.md5 deleted file mode 100644 index 69324f95..00000000 --- a/Cicer/GENUS/pangenes/Cicer.pan1.SV8C/CHECKSUM.Cicer.pan1.SV8C.md5 +++ /dev/null @@ -1,19 +0,0 @@ -22561f3f612966cc505bbdca0c9f155b CHANGES.Cicer.pan1.SV8C.txt -c5c632b7ea560a0068500ece2106351c Cicer.pan1.SV8C.clust.tsv.gz -173011d96c5d37477610cc75b1dcb52d Cicer.pan1.SV8C.complement.fna.gz -81e5e3b20bd81b48fb7fdbb93ea71485 Cicer.pan1.SV8C.complement.fna.gz.fai -5ef4f6a04a11c55b326c5e0992f16edc Cicer.pan1.SV8C.complement.fna.gz.gzi -a2c56adc4da61444540b5c5c5739c82e Cicer.pan1.SV8C.counts.tsv.gz -ca096e75d43aa166b9fc12d3e43e4d64 Cicer.pan1.SV8C.hsh.tsv.gz -f53703b842de006c23ad5717743db34f Cicer.pan1.SV8C.inclusive_cds.fna.gz -20ff3abc127116777dd99c418beb5de6 Cicer.pan1.SV8C.inclusive_cds.fna.gz.fai -27f2fa4597d8b3f746b9866a2ac93be4 Cicer.pan1.SV8C.inclusive_cds.fna.gz.gzi -daf06859377d8a2a09394844b1016f13 Cicer.pan1.SV8C.inclusive_protein.faa.gz -a2bf662261587fb9678ead33a33f3519 Cicer.pan1.SV8C.inclusive_protein.faa.gz.fai -503ced5373a5f8ea4a515014fa93e10b Cicer.pan1.SV8C.inclusive_protein.faa.gz.gzi -a3db105f98c31b69146cef30f32313c3 Cicer.pan1.SV8C.pctl25_named_cds.fna.gz -eca815154fcd44e990655e9a499805ae Cicer.pan1.SV8C.pctl25_named_protein.faa.gz -f9c29461023c2a5354bfe417a30cce19 Cicer.pan1.SV8C.stats.txt -e12fa0c43664bc90631a9ffab64238c5 MANIFEST.Cicer.pan1.SV8C.correspondence.yml -9e432c932795b6e49d93e9785ebe6bd7 MANIFEST.Cicer.pan1.SV8C.descriptions.yml -9a7d9cba9b95b674d1b45f74ec985811 README.Cicer.pan1.SV8C.yml diff --git a/Cicer/GENUS/pangenes/Cicer.pan1.SV8C/README.Cicer.pan1.SV8C.yml b/Cicer/GENUS/pangenes/Cicer.pan1.SV8C/README.Cicer.pan1.SV8C.yml deleted file mode 100644 index 9fbd1600..00000000 --- a/Cicer/GENUS/pangenes/Cicer.pan1.SV8C/README.Cicer.pan1.SV8C.yml +++ /dev/null @@ -1,42 +0,0 @@ ---- -identifier: Cicer.pan1.SV8C - -provenance: "The files in this directory are a product of the staff of the SoyBase and LegumeInfo project teams. The method is described here: https://github.com/legumeinfo/pandagma" - -source: "https://data.legumeinfo.org" - -synopsis: "Pangene set for Cicer species, based on C. arietinum, C. echinospermum, and reticulatum. This pangene set includes 12 annotation sets." - -scientific_name: Cicer - -scientific_name_abbrev: Cicer - -taxid: 3826 - -annotations_main: - - cicar.CDCFrontier.gnm3.ann1 - - cicar.ICC4958.gnm2.ann1 - - cicec.S2Drd065.gnm1.ann1 - - cicre.Besev079.gnm1.ann1 - -annotations_extra: - - cicar.CDCFrontier.gnm1.ann1 - - cicar.CDCFrontier.gnm2.ann1 - -description: "Pan-gene set for Cicer species, spanning 3 species and 6 annotation sets, calculated using the pandagma pipeline, version 2023-04-03" - -original_file_creation_date: "2023-04-03" - -local_file_creation_date: "2023-04-03" - -dataset_release_date: "2023-04-03" - -contributors: Steven Cannon, Hyunoh Lee - -data_curators: Steven Cannon - -public_access_level: public - -license: Open - -keywords: Cicer, chickpea, pan-gene, pangene, orthogroup diff --git a/Glycine/GENUS/pangenes/Glycine.pan3.YWTW/CHECKSUM.Glycine.pan3.YWTW.md5 b/Glycine/GENUS/pangenes/Glycine.pan3.YWTW/CHECKSUM.Glycine.pan3.YWTW.md5 deleted file mode 100644 index 29a91b4a..00000000 --- a/Glycine/GENUS/pangenes/Glycine.pan3.YWTW/CHECKSUM.Glycine.pan3.YWTW.md5 +++ /dev/null @@ -1,23 +0,0 @@ -fd61e3f5ad659bf8830f9f135e5d2ac6 ./Glycine.pan3.YWTW.hsh.tsv.gz -42b76cb21e229fbc8abc08297084e527 ./MANIFEST.Glycine.pan3.YWTW.correspondence.yml -47d024db9454a5fbd1d596e5b6386d31 ./Glycine.pan3.YWTW.pctl25_named_protein.faa.gz -f72acd1f833c3b637843694288f5e08f ./Glycine.pan3.YWTW.inclusive_protein.faa.gz.gzi -b9a3af2be8c01aa0ceb83c85130c8df6 ./Glycine.pan3.YWTW.pctl25_named_protein.faa.gz.fai -17047246f6dd6edd32d2a7cf93ac5c40 ./Glycine.pan3.YWTW.pctl25_named_cds.fna.gz.gzi -d928ad391ab844576c701dce3541c18c ./README.Glycine.pan3.YWTW.yml -1b62b389d476e4547f71abf571e31112 ./Glycine.pan3.YWTW.counts.tsv.gz -459d68da67711602fc9031d699588bb7 ./CHANGES.Glycine.pan3.YWTW.txt -d12932a0142c1c084a476ab4b90b21fd ./Glycine.pan3.YWTW.inclusive_cds.fna.gz -b6d0a716712f4fe5a2f2fdf4be43a645 ./Glycine.pan3.YWTW.inclusive_protein.faa.gz -98cc122bb47f7d7cc31d9877e43695db ./MANIFEST.Glycine.pan3.YWTW.descriptions.yml -c69cb7ede5b73d5f99465d1bfc65c8bd ./Glycine.pan3.YWTW.complement.fna.gz.gzi -150513eabb564a76e5540af38419c0d6 ./Glycine.pan3.YWTW.inclusive_cds.fna.gz.gzi -b7070910b9a8dd5fd9f4c1c507902e8e ./Glycine.pan3.YWTW.inclusive_cds.fna.gz.fai -f5ffd823066219b705c80e4e772cc0b1 ./Glycine.pan3.YWTW.pctl25_named_cds.fna.gz -2dcccc0b929179c5d8feb5b76c566142 ./Glycine.pan3.YWTW.stats.txt -9aee3392bb4f25ffe9ccb5108904c618 ./Glycine.pan3.YWTW.clust.tsv.gz -3e399b116c5f6e6a7807caecf81cc35d ./Glycine.pan3.YWTW.complement.fna.gz.fai -b9faa6b79e5b8f6265880cdc63135e93 ./Glycine.pan3.YWTW.complement.fna.gz -d3aedf05d4fa947dc225e3a4bfc4c24a ./Glycine.pan3.YWTW.pctl25_named_cds.fna.gz.fai -55be9e01c2bbf20845bf17b2bff4e2c3 ./Glycine.pan3.YWTW.pctl25_named_protein.faa.gz.gzi -16859d3950c9899653d793e556b47428 ./Glycine.pan3.YWTW.inclusive_protein.faa.gz.fai diff --git a/Glycine/GENUS/pangenes/Glycine.pan3.YWTW/README.Glycine.pan3.YWTW.yml b/Glycine/GENUS/pangenes/Glycine.pan3.YWTW/README.Glycine.pan3.YWTW.yml deleted file mode 100644 index fb058c39..00000000 --- a/Glycine/GENUS/pangenes/Glycine.pan3.YWTW/README.Glycine.pan3.YWTW.yml +++ /dev/null @@ -1,88 +0,0 @@ ---- -identifier: Glycine.pan3.YWTW - -provenance: "The files in this directory are a product of the staff of the SoyBase and LegumeInfo project teams. The method is described here: https://github.com/legumeinfo/pandagma" - -source: "https://data.legumeinfo.org" - -synopsis: "Pangene set for Glycine species, based on G. max and G. soja but also including 6 perennial Australian species by homology. This pangene set includes 51 Glycine annotation sets." - -scientific_name: Glycine - -scientific_name_abbrev: Glycine - -taxid: 3846 - -annotations_main: - - glyma.FiskebyIII.gnm1.ann1 - - glyma.Hefeng25_IGA1002.gnm1.ann1 - - glyma.Huaxia3_IGA1007.gnm1.ann1 - - glyma.Jinyuan_IGA1006.gnm1.ann1 - - glyma.Lee.gnm1.ann1 - - glyma.Lee.gnm2.ann1 - - glyma.Wenfeng7_IGA1001.gnm1.ann1 - - glyma.Wm82.gnm2.ann1 - - glyma.Wm82.gnm4.ann1 - - glyma.Wm82_IGA1008.gnm1.ann1 - - glyma.Wm82_ISU01.gnm2.ann1 - - glyma.Zh13.gnm1.ann1 - - glyma.Zh13_IGA1005.gnm1.ann1 - - glyma.Zh35_IGA1004.gnm1.ann1 - - glyso.F_IGA1003.gnm1.ann1 - - glyso.PI483463.gnm1.ann1 - - glyso.W05.gnm1.ann1 - -annotations_extra: - - glycy.G1267.gnm1.ann1 - - glyd3.G1403.gnm1.ann1 - - glydo.G1134.gnm1.ann1 - - glyfa.G1718.gnm1.ann1 - - glyma.58-161.gnm1.ann1 - - glyma.Amsoy.gnm1.ann1 - - glyma.DongNongNo_50.gnm1.ann1 - - glyma.FengDiHuang.gnm1.ann1 - - glyma.HanDouNo_5.gnm1.ann1 - - glyma.HeiHeNo_43.gnm1.ann1 - - glyma.Hwangkeum.gnm1.ann1 - - glyma.JiDouNo_17.gnm1.ann1 - - glyma.JinDouNo_23.gnm1.ann1 - - glyma.JuXuanNo_23.gnm1.ann1 - - glyma.KeShanNo_1.gnm1.ann1 - - glyma.PI_398296.gnm1.ann1 - - glyma.PI_548362.gnm1.ann1 - - glyma.QiHuangNo_34.gnm1.ann1 - - glyma.ShiShengChangYe.gnm1.ann1 - - glyma.TieFengNo_18.gnm1.ann1 - - glyma.TieJiaSiLiHuang.gnm1.ann1 - - glyma.TongShanTianEDan.gnm1.ann1 - - glyma.WanDouNo_28.gnm1.ann1 - - glyma.Wm82.gnm1.ann1 - - glyma.XuDouNo_1.gnm1.ann1 - - glyma.YuDouNo_22.gnm1.ann1 - - glyma.Zh13.gnm2.ann1 - - glyma.ZhangChunManCangJin.gnm1.ann1 - - glyma.Zhutwinning2.gnm1.ann1 - - glyma.ZiHuaNo_4.gnm1.ann1 - - glyso.PI_549046.gnm1.ann1 - - glyso.PI_562565.gnm1.ann1 - - glyso.PI_578357.gnm1.ann1 - - glyst.G1974.gnm1.ann1 - - glysy.G1300.gnm1.ann1 - -description: "Pan-gene set for Glycine species, spanning 8 species and 51 annotation sets, calculated using the pandagma pipeline, version 2023-04-03" - -original_file_creation_date: "2023-04-03" - -local_file_creation_date: "2023-04-03" - -dataset_release_date: "2023-04-03" - -contributors: Steven Cannon, Hyunoh Lee - -data_curators: Steven Cannon - -public_access_level: public - -license: Open - -keywords: soybean, Glycine, pan-gene, pangene, orthogroup diff --git a/Medicago/GENUS/pangenes/Medicago.pan1.XXQ6/README.Medicago.pan1.XXQ6.yml b/Medicago/GENUS/pangenes/Medicago.pan1.XXQ6/README.Medicago.pan1.XXQ6.yml deleted file mode 100644 index a8498c16..00000000 --- a/Medicago/GENUS/pangenes/Medicago.pan1.XXQ6/README.Medicago.pan1.XXQ6.yml +++ /dev/null @@ -1,59 +0,0 @@ ---- -identifier: Medicago.pan1.XXQ6 - -provenance: "The files in this directory are a product of the staff of the SoyBase and LegumeInfo project teams. The method is described here: https://github.com/legumeinfo/pandagma" - -source: "https://data.legumeinfo.org" - -synopsis: "Pangene set for Medicago species, based primarily on M. truncatula but also including M. sativa. This pangene set includes 19 annotation sets." - -scientific_name: Medicago - -scientific_name_abbrev: Medicago - -taxid: 3877 - -annotations_main: - - medsa.XinJiangDaYe_1.gnm1.ann1 - - medsa.XinJiangDaYe_2.gnm1.ann1 - - medsa.XinJiangDaYe_3.gnm1.ann1 - - medsa.XinJiangDaYe_4.gnm1.ann1 - - medtr.A17_HM341.gnm4.ann2 - - medtr.A17.gnm5.ann1_6 - - medtr.R108.gnmHiC_1.ann1 - -annotations_extra: - - medsa.XinJiangDaYe_sc.gnm1.ann1 - - medtr.HM004.gnm1.ann1 - - medtr.HM010.gnm1.ann1 - - medtr.HM022.gnm1.ann1 - - medtr.HM023.gnm1.ann1 - - medtr.HM034.gnm1.ann1 - - medtr.HM050.gnm1.ann1 - - medtr.HM056.gnm1.ann1 - - medtr.HM058.gnm1.ann1 - - medtr.HM060.gnm1.ann1 - - medtr.HM095.gnm1.ann1 - - medtr.HM125.gnm1.ann1 - - medtr.HM129.gnm1.ann1 - - medtr.HM185.gnm1.ann1 - - medtr.HM324.gnm1.ann1 - - medtr.R108_HM340.gnm1.ann1 - -description: "Pan-gene set for Medicago species, spanning 2 species and 19 annotation sets, calculated using the pandagma pipeline, version 2023-04-03" - -original_file_creation_date: "2023-04-03" - -local_file_creation_date: "2023-04-03" - -dataset_release_date: "2023-04-03" - -contributors: Steven Cannon, Hyunoh Lee - -data_curators: Steven Cannon - -public_access_level: public - -license: Open - -keywords: Medicago, barrel medic, alfalfa, lucerne, pan-gene, pangene, orthogroup diff --git a/Phaseolus/GENUS/pangenes/Phaseolus.pan1.X2PC/CHECKSUM.Phaseolus.pan1.X2PC.md5 b/Phaseolus/GENUS/pangenes/Phaseolus.pan1.X2PC/CHECKSUM.Phaseolus.pan1.X2PC.md5 deleted file mode 100644 index 376bb067..00000000 --- a/Phaseolus/GENUS/pangenes/Phaseolus.pan1.X2PC/CHECKSUM.Phaseolus.pan1.X2PC.md5 +++ /dev/null @@ -1,23 +0,0 @@ -4b1b4ef9008f8a0db184e9c8f6d7670a ./Phaseolus.pan1.X2PC.clust.tsv.gz -c8adff8a028af773d53ef9993827f4de ./Phaseolus.pan1.X2PC.counts.tsv.gz -f07990002132a18deb6e4ba2828280cb ./Phaseolus.pan1.X2PC.complement.fna.gz.fai -c2922b11a3f1db05e8b709b633e468aa ./Phaseolus.pan1.X2PC.inclusive_protein.faa.gz -fe3c9b9a52e3e3361feffbf2a2403405 ./Phaseolus.pan1.X2PC.pctl25_named_protein.faa.gz.fai -519fce3102951bb54f495e7a4d4423ca ./Phaseolus.pan1.X2PC.pctl25_named_cds.fna.gz.fai -aa9242234d0262104a71000d88841cd6 ./Phaseolus.pan1.X2PC.inclusive_protein.faa.gz.gzi -661e1ef637626ae18af8cfea33bc8fdd ./MANIFEST.Phaseolus.pan1.X2PC.correspondence.yml -968ce02c12107cf50a91f510b4eed2c5 ./Phaseolus.pan1.X2PC.hsh.tsv.gz -b4601c4b97143a5824be96e5f176416f ./Phaseolus.pan1.X2PC.inclusive_cds.fna.gz.gzi -c1095f434871ff307333743e568383b7 ./Phaseolus.pan1.X2PC.complement.fna.gz -7b7a63969ef38af1b630bf48d60ba819 ./MANIFEST.Phaseolus.pan1.X2PC.descriptions.yml -acfb8d9ccf973039fb3dff967f85a46d ./README.Phaseolus.pan1.X2PC.yml -02bd439fd6c83e1b4c6839deeae75495 ./Phaseolus.pan1.X2PC.pctl25_named_protein.faa.gz -2153679306ccca68cbfab4beb32dca94 ./Phaseolus.pan1.X2PC.inclusive_cds.fna.gz.fai -f52bbc2c33f45972feaee8cfb2742088 ./Phaseolus.pan1.X2PC.stats.txt -459d68da67711602fc9031d699588bb7 ./CHANGES.Phaseolus.pan1.X2PC.txt -b9d1c4d1d467362ee23a59978730b84f ./Phaseolus.pan1.X2PC.pctl25_named_protein.faa.gz.gzi -29687aee3078580a5380c7d42ab47e5a ./Phaseolus.pan1.X2PC.pctl25_named_cds.fna.gz -d89664260bec9dad656eb00e6e693dbf ./Phaseolus.pan1.X2PC.pctl25_named_cds.fna.gz.gzi -43c121b6e73b72d4790a3cee80e4c749 ./Phaseolus.pan1.X2PC.inclusive_protein.faa.gz.fai -4834d5937821806ccc3a859ca636b49e ./Phaseolus.pan1.X2PC.complement.fna.gz.gzi -ab901f12a69928c98ceeeeba616e618c ./Phaseolus.pan1.X2PC.inclusive_cds.fna.gz diff --git a/Phaseolus/GENUS/pangenes/Phaseolus.pan1.X2PC/README.Phaseolus.pan1.X2PC.yml b/Phaseolus/GENUS/pangenes/Phaseolus.pan1.X2PC/README.Phaseolus.pan1.X2PC.yml deleted file mode 100644 index 9908d29f..00000000 --- a/Phaseolus/GENUS/pangenes/Phaseolus.pan1.X2PC/README.Phaseolus.pan1.X2PC.yml +++ /dev/null @@ -1,44 +0,0 @@ ---- -identifier: Phaseolus.pan1.X2PC - -provenance: "The files in this directory are a product of the staff of the SoyBase and LegumeInfo project teams. The method is described here: https://github.com/legumeinfo/pandagma" - -source: "https://data.legumeinfo.org" - -synopsis: "Pangene set for Phaseolus species, based primarily on P. vulgaris but also including P. acutifolius and P. lunatus. This pangene set includes 8 annotation sets." - -scientific_name: Phaseolus - -scientific_name_abbrev: Phaseolus - -taxid: 3883 - -annotations_main: - - phaac.Frijol_Bayo.gnm1.ann1 - - phaac.W6_15578.gnm2.ann1 - - phalu.G27455.gnm1.ann1 - - phavu.5-593.gnm1.ann1 - - phavu.G19833.gnm2.ann1 - - phavu.LaborOvalle.gnm1.ann1 - - phavu.UI111.gnm1.ann1 - -annotations_extra: - - phavu.G19833.gnm1.ann1 - -description: "Pan-gene set for Phaseolus species, spanning 3 species and 8 annotation sets, calculated using the pandagma pipeline, version 2023-04-03" - -original_file_creation_date: "2023-04-03" - -local_file_creation_date: "2023-04-03" - -dataset_release_date: "2023-04-03" - -contributors: Steven Cannon, Hyunoh Lee - -data_curators: Steven Cannon - -public_access_level: public - -license: Open - -keywords: Phaseolus, common bean, lima bean, pan-gene, pangene, orthogroup diff --git a/Vigna/GENUS/pangenes/Vigna.pan1.X2PC/CHECKSUM.Vigna.pan1.X2PC.md5 b/Vigna/GENUS/pangenes/Vigna.pan1.X2PC/CHECKSUM.Vigna.pan1.X2PC.md5 deleted file mode 100644 index 9b4c1879..00000000 --- a/Vigna/GENUS/pangenes/Vigna.pan1.X2PC/CHECKSUM.Vigna.pan1.X2PC.md5 +++ /dev/null @@ -1,23 +0,0 @@ -8a44948b1f286878c1f1ec8c3b401ced ./README.Vigna.pan1.X2PC.yml -0ea6c4cf06b99a7d5efafc3ddf584755 ./Vigna.pan1.X2PC.pctl25_named_cds.fna.gz.gzi -9ae4cc7c089341903901f8258815484e ./Vigna.pan1.X2PC.pctl25_named_protein.faa.gz -ecc3c53cade3a9489bb94cb5ab0c1cb2 ./Vigna.pan1.X2PC.complement.fna.gz -85364545512ee95624c4e6ce3207d082 ./Vigna.pan1.X2PC.inclusive_protein.faa.gz.gzi -35a67d8ff184eacb681c54dd84a1709f ./Vigna.pan1.X2PC.complement.fna.gz.fai -9435e7c70f828803f93572fffeb1c33a ./Vigna.pan1.X2PC.clust.tsv.gz -81a21a79c1fd0f55464f359d2191be15 ./Vigna.pan1.X2PC.counts.tsv.gz -744357b1c23372643782cfe7b32a86da ./Vigna.pan1.X2PC.inclusive_cds.fna.gz.gzi -5c8b075d0e0025635670ebf2b4f220eb ./Vigna.pan1.X2PC.hsh.tsv.gz -487cb900fbfb335939e3294e92f932e8 ./Vigna.pan1.X2PC.inclusive_protein.faa.gz -13aa90f9089977247250798d860be895 ./Vigna.pan1.X2PC.pctl25_named_protein.faa.gz.fai -d7227d1bb5d6cd7aa921fa741e7efb87 ./MANIFEST.Vigna.pan1.X2PC.correspondence.yml -7a1e8ff0d124845f2d39c517550d291e ./Vigna.pan1.X2PC.inclusive_cds.fna.gz -71766712b0a5f19ed791dca7ab7764dc ./Vigna.pan1.X2PC.stats.txt -80f8ccbdd2599f2ce988480f5a33a409 ./Vigna.pan1.X2PC.pctl25_named_protein.faa.gz.gzi -8bc5d3446fdf56a66a6c013857d811c5 ./Vigna.pan1.X2PC.complement.fna.gz.gzi -5bca28125758e9e6f73491e62f018ae4 ./Vigna.pan1.X2PC.inclusive_cds.fna.gz.fai -a9ae9fe95d3854da9725c2c9a1b237bf ./MANIFEST.Vigna.pan1.X2PC.descriptions.yml -772d0af9982a03ff6d751e914ba85d6a ./Vigna.pan1.X2PC.pctl25_named_cds.fna.gz -557cd6350963681c845d329ed47e9365 ./Vigna.pan1.X2PC.inclusive_protein.faa.gz.fai -22e4835fd08749c736ae2c06833584f1 ./Vigna.pan1.X2PC.pctl25_named_cds.fna.gz.fai -459d68da67711602fc9031d699588bb7 ./CHANGES.Vigna.pan1.X2PC.txt diff --git a/Vigna/GENUS/pangenes/Vigna.pan1.X2PC/README.Vigna.pan1.X2PC.yml b/Vigna/GENUS/pangenes/Vigna.pan1.X2PC/README.Vigna.pan1.X2PC.yml deleted file mode 100644 index 5eced837..00000000 --- a/Vigna/GENUS/pangenes/Vigna.pan1.X2PC/README.Vigna.pan1.X2PC.yml +++ /dev/null @@ -1,48 +0,0 @@ - -identifier: Vigna.pan1.X2PC - -provenance: "The files in this directory are a product of the staff of the SoyBase and LegumeInfo project teams. The method is described here: https://github.com/legumeinfo/pandagma" - -source: "https://data.legumeinfo.org" - -synopsis: "Pangene set for Vigna species, based primarily on V. unguiculata but also including V. angularis and V. radiata. This pangene set includes 12 annotation sets." - -scientific_name: Vigna - -scientific_name_abbrev: Vigna - -taxid: 3913 - -annotations_main: - - vigun.CB5-2.gnm1.ann1 - - vigun.IT97K-499-35.gnm1.ann2 - - vigun.Sanzi.gnm1.ann1 - - vigun.Suvita2.gnm1.ann1 - - vigun.TZ30.gnm1.ann2 - - vigun.UCR779.gnm1.ann1 - - vigun.ZN016.gnm1.ann2 - -annotations_extra: - - vigan.Gyeongwon.gnm3.ann1 - - vigan.Shumari.gnm1.ann1 - - vigra.VC1973A.gnm6.ann1 - - vigra.VC1973A.gnm7.ann1 - - vigun.IT97K-499-35.gnm1.ann1 - -description: "Pan-gene set for Vigna species, spanning 3 species and 12 annotation sets, calculated using the pandagma pipeline, version 2023-04-03" - -original_file_creation_date: "2023-04-03" - -local_file_creation_date: "2023-04-03" - -dataset_release_date: "2023-04-03" - -contributors: Steven Cannon, Hyunoh Lee - -data_curators: Steven Cannon - -public_access_level: public - -license: Open - -keywords: Vigna, cowpea, mung bean, pan-gene, pangene, orthogroup From 18d4fae9c35d1036c2d8c483c6a8213da0945059 Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Wed, 20 Sep 2023 14:15:17 -0500 Subject: [PATCH 23/57] added genome metadata for glyma.JD17.gnm1.TW7L --- ...W7L.busco.fabales_odb10.short_summary.json | 62 +++++++++++++++++++ .../CHECKSUM.JD17.gnm1.TW7L.md5 | 11 ++++ .../JD17.gnm1.TW7L/README.JD17.gnm1.TW7L.yml | 46 ++++++++++++++ 3 files changed, 119 insertions(+) create mode 100644 Glycine/max/genomes/JD17.gnm1.TW7L/BUSCO/glyma.JD17.gnm1.TW7L.busco.fabales_odb10.short_summary.json create mode 100644 Glycine/max/genomes/JD17.gnm1.TW7L/CHECKSUM.JD17.gnm1.TW7L.md5 create mode 100644 Glycine/max/genomes/JD17.gnm1.TW7L/README.JD17.gnm1.TW7L.yml diff --git a/Glycine/max/genomes/JD17.gnm1.TW7L/BUSCO/glyma.JD17.gnm1.TW7L.busco.fabales_odb10.short_summary.json b/Glycine/max/genomes/JD17.gnm1.TW7L/BUSCO/glyma.JD17.gnm1.TW7L.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..ab9760ec --- /dev/null +++ b/Glycine/max/genomes/JD17.gnm1.TW7L/BUSCO/glyma.JD17.gnm1.TW7L.busco.fabales_odb10.short_summary.json @@ -0,0 +1,62 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.Fg83sk/glyma.JD17.gnm1.TW7L.genome_main.fna", + "out": "BUSCO_genome_fabales_odb10", + "mode": "euk_genome_met", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_genome_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota", + "max_intron": "90000", + "max_seq_len": "120000", + "metaeuk_parameters": "", + "metaeuk_rerun_parameters": "", + "contig_break": "10", + "scaffold_composition": "False", + "gene_predictor": "metaeuk" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "bbtools": "38.96", + "metaeuk": "5.34c21f2", + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:99.5%[S:36.1%,D:63.4%],F:0.1%,M:0.4%,n:5366", + "Complete": 99.5, + "Single copy": 36.1, + "Multi copy": 63.4, + "Fragmented": 0.1, + "Missing": 0.4, + "n_markers": 5366, + "domain": "eukaryota", + "Number of scaffolds": "50", + "Number of contigs": "449", + "Total length": "995269373", + "Percent gaps": "0.004%", + "Scaffold N50": "50612565", + "Contigs N50": "17997902" + } +} \ No newline at end of file diff --git a/Glycine/max/genomes/JD17.gnm1.TW7L/CHECKSUM.JD17.gnm1.TW7L.md5 b/Glycine/max/genomes/JD17.gnm1.TW7L/CHECKSUM.JD17.gnm1.TW7L.md5 new file mode 100644 index 00000000..ed66cb14 --- /dev/null +++ b/Glycine/max/genomes/JD17.gnm1.TW7L/CHECKSUM.JD17.gnm1.TW7L.md5 @@ -0,0 +1,11 @@ +908fe930e6542fc04875313b9581f6c0 ./BUSCO/glyma.JD17.gnm1.TW7L.busco.fabales_odb10.short_summary.json +036606c95e2cd3dc3c956301d2f56465 ./BUSCO/glyma.JD17.gnm1.TW7L.busco.fabales_odb10.full_table.tsv.gz +25ea1eda9c9aa686f0b61e432e135298 ./BUSCO/glyma.JD17.gnm1.TW7L.busco.fabales_odb10.short_summary.txt +df4a6cf61deff6a16566d73f6802d349 ./glyma.JD17.gnm1.TW7L.seqid_map.tsv.gz +5de94612cf4367613ba6e45c07a3f15e ./glyma.JD17.gnm1.TW7L.genome_main.fna.gz.fai +06bc9cdb0d120dc1981181d7ae82c720 ./MANIFEST.JD17.gnm1.TW7L.correspondence.yml +1b646a6013ad915483f5d80d398ebebd ./MANIFEST.JD17.gnm1.TW7L.descriptions.yml +25173ee7c0d734d19b1a1d0c3877f583 ./CHANGES.JD17.gnm1.TW7L.txt +9e49a885cfa1d34a40f2c45461fed9ce ./glyma.JD17.gnm1.TW7L.genome_main.fna.gz.gzi +e71182524706bec0e77a6d4d78449764 ./glyma.JD17.gnm1.TW7L.genome_main.fna.gz +770ad4c62a2d0d657232b9fc91751ac0 ./README.JD17.gnm1.TW7L.yml diff --git a/Glycine/max/genomes/JD17.gnm1.TW7L/README.JD17.gnm1.TW7L.yml b/Glycine/max/genomes/JD17.gnm1.TW7L/README.JD17.gnm1.TW7L.yml new file mode 100644 index 00000000..7a25f871 --- /dev/null +++ b/Glycine/max/genomes/JD17.gnm1.TW7L/README.JD17.gnm1.TW7L.yml @@ -0,0 +1,46 @@ +--- +identifier: JD17.gnm1.TW7L + +provenance: "The files in this directory originated from https://doi.org/10.25387/g3.17065499, with the assembly corresponding to the one at GenBank under accession GCA_021733175.1. Those two repositories are considered the primary and authoritative for this data; files in this present directory are derived, and may have changes, as noted below. The files here are held as part of the LegumeInfo and SoyBase projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo and SoyBase projects. If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please respect any usage restrictions in the present and original repositories, and cite the data appropriately." + +source: "https://doi.org/10.25387/g3.17065499" + +synopsis: "Glycine max accession Jidou 17 (JD17), genome assembly 1" + +scientific_name: Glycine max + +taxid: 3847 + +genotype: + - JD17 + +chromosome_prefix: Chr + +supercontig_prefix: PGA_scaffold + +description: "Sequenced using PacBio RSII; assembled with CANU v. 1.4; FALCON v. 1.8.7 23 Mar 2017; HGAP v. SMRT Link v 5.0.1.9585; GPM v. Aug-2017" + +genbank_accession: GCA_021733175.1 + +original_file_creation_date: "2022-02-03" + +local_file_creation_date: "2023-08-29" + +dataset_release_date: "2023-10-01" + +publication_doi: 10.1093/g3journal/jkac017 + +publication_title: "Genome assembly of the JD17 soybean provides a new reference genome for comparative genomics" + +contributors: Yi X, Liu J, Chen S, Wu H, Liu M, Xu Q, Lei L, Lee S, Zhang B, Kudrna D, Fan W, Wing RA, Wang X, Zhang M, Zhang J, Yang C, Chen N. + +citation: "Yi X, Liu J, Chen S, Wu H, Liu M, Xu Q, Lei L, Lee S, Zhang B, Kudrna D, Fan W, Wing RA, Wang X, Zhang M, Zhang J, Yang C, Chen N. Genome assembly of the JD17 soybean provides a new reference genome for comparative genomics. G3 (Bethesda). 2022 Apr 4;12(4):jkac017. doi: 10.1093/g3journal/jkac017. PMID: 35188189; PMCID: PMC8982393." + +data_curators: Steven Cannon + +public_access_level: public + +license: Open, with usage agreement + +keywords: soybean, JD17, Jidou 17 + From 066b06f86be5de5ae8d12a4c06e579ef3e2b7550 Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Fri, 22 Sep 2023 03:19:40 -0500 Subject: [PATCH 24/57] checksums updated due to changes in gfa --- .../CHECKSUM.JD17.gnm1.ann1.CLFP.md5 | 33 +++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/CHECKSUM.JD17.gnm1.ann1.CLFP.md5 diff --git a/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/CHECKSUM.JD17.gnm1.ann1.CLFP.md5 b/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/CHECKSUM.JD17.gnm1.ann1.CLFP.md5 new file mode 100644 index 00000000..6bffe9aa --- /dev/null +++ b/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/CHECKSUM.JD17.gnm1.ann1.CLFP.md5 @@ -0,0 +1,33 @@ +e9f1fcbe286b7003e1cf5d741ec44f7d ./glyma.JD17.gnm1.ann1.CLFP.mrna_primary.fna.gz.gzi +b72f8cb2487f7b1b9dd343603be009ed ./glyma.JD17.gnm1.ann1.CLFP.iprscan.gff3.gz +d0fa96a40361199f6a05c0b7bdd17adb ./glyma.JD17.gnm1.ann1.CLFP.gene_models_main.gff3.gz +bcd9b1df636c0a6b73ed51f1fd8f3a29 ./glyma.JD17.gnm1.ann1.CLFP.protein.faa.gz +ce5ce25fae375da9ebec359c77220f50 ./BUSCO/glyma.JD17.gnm1.ann1.CLFP.busco.fabales_odb10.short_summary.txt +f1092789774522e34cb17f76a66be932 ./BUSCO/glyma.JD17.gnm1.ann1.CLFP.busco.fabales_odb10.full_table.tsv.gz +dbeda7c10ea5506314186fcdd1232a07 ./BUSCO/glyma.JD17.gnm1.ann1.CLFP.busco.fabales_odb10.short_summary.json +d41d8cd98f00b204e9800998ecf8427e ./BUSCO/.busco.fabales_odb10.full_table.tsv.gz +b7f45c39b9fe068c7b7115288ba538d8 ./glyma.JD17.gnm1.ann1.CLFP.gene_models_main.gff3.gz.tbi +c9f56fd57ab7865b35a40a798431396e ./glyma.JD17.gnm1.ann1.CLFP.cds.fna.gz.gzi +52f19639ba5fca7117fada8c7896c60a ./glyma.JD17.gnm1.ann1.CLFP.protein.faa.gz.fai +5aff5ac9de5f2c298bf363bb58517a90 ./glyma.JD17.gnm1.ann1.CLFP.cds.bed.gz +9a6de3813a57300bdc2cb90e8c1d944a ./glyma.JD17.gnm1.ann1.CLFP.featid_map.tsv.gz +fee2f08b48b92a384d4a9c7038ed857f ./glyma.JD17.gnm1.ann1.CLFP.mrna.fna.gz.fai +0a2b4cf0e866db11463391b3f3ad7996 ./glyma.JD17.gnm1.ann1.CLFP.cds_primary.fna.gz.fai +ef3b06eb0dce5849a4669821d5b61a90 ./glyma.JD17.gnm1.ann1.CLFP.protein_primary.faa.gz.gzi +5750576349f60c9f7e5c33c81ee536d6 ./glyma.JD17.gnm1.ann1.CLFP.mrna_primary.fna.gz +56ece713661a50d0625d0dbbd915380f ./glyma.JD17.gnm1.ann1.CLFP.cds_primary.fna.gz +c43d2d6fb1b1d2bc0edf93d4617b6016 ./README.JD17.gnm1.ann1.CLFP.yml +64a09cc71d7b4f493388a6ea0da1cdea ./glyma.JD17.gnm1.ann1.CLFP.legfed_v1_0.M65K.gfa.tsv.gz +d4d81ba9b0deddad215087b111af2235 ./glyma.JD17.gnm1.ann1.CLFP.mrna.fna.gz +c0de1449c9300953ccc9def70bb3bd18 ./glyma.JD17.gnm1.ann1.CLFP.protein_primary.faa.gz.fai +2064325159be4a2e78d4c60808ccc4ec ./glyma.JD17.gnm1.ann1.CLFP.protein_primary.faa.gz +ca9a25d99e793cd6c37a6d6a5852f2d1 ./glyma.JD17.gnm1.ann1.CLFP.cds_primary.fna.gz.gzi +40576c1baab4da982306413ed802d07b ./CHANGES.JD17.gnm1.ann1.CLFP.txt +1fcea5e724403186776d4c449c546241 ./glyma.JD17.gnm1.ann1.CLFP.mrna.fna.gz.gzi +efa212fd186fe5bd4eb7114f09d80795 ./MANIFEST.JD17.gnm1.ann1.CLFP.correspondence.yml +8c9ab2bb694fb9c67d1c9e5f0646c049 ./glyma.JD17.gnm1.ann1.CLFP.cds.fna.gz.fai +f5d4b53ccef40f33aed192fd01b5c10b ./glyma.JD17.gnm1.ann1.CLFP.iprscan.gff3.gz.tbi +4bfbeaadc80dd21db27b9f679c0b71e2 ./glyma.JD17.gnm1.ann1.CLFP.protein.faa.gz.gzi +db7954ee45d4059c805b976dba4d73c7 ./MANIFEST.JD17.gnm1.ann1.CLFP.descriptions.yml +9f8e09705932f554f1a718560e1682e2 ./glyma.JD17.gnm1.ann1.CLFP.mrna_primary.fna.gz.fai +f2e5061aa4d93107c51a45021ab78506 ./glyma.JD17.gnm1.ann1.CLFP.cds.fna.gz From 9f36966be06adde27a95417f41459cef02d95e22 Mon Sep 17 00:00:00 2001 From: Sam Hokin Date: Fri, 22 Sep 2023 09:38:26 -0600 Subject: [PATCH 25/57] Added gensp. --- .../JD17.gnm1.ann1.CLFP/README.JD17.gnm1.ann1.CLFP.yml | 3 ++- Glycine/max/genomes/JD17.gnm1.TW7L/README.JD17.gnm1.TW7L.yml | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/README.JD17.gnm1.ann1.CLFP.yml b/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/README.JD17.gnm1.ann1.CLFP.yml index 661da118..2ede55d8 100644 --- a/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/README.JD17.gnm1.ann1.CLFP.yml +++ b/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/README.JD17.gnm1.ann1.CLFP.yml @@ -9,6 +9,8 @@ synopsis: "Annotation 1 for Glycine max accession Jidou 17 (JD17), genome assemb scientific_name: Glycine max +scientific_name_abbrev: glyma + taxid: 3847 genotype: @@ -43,4 +45,3 @@ public_access_level: public license: Open, with usage agreement keywords: soybean, JD17, Jidou 17 - diff --git a/Glycine/max/genomes/JD17.gnm1.TW7L/README.JD17.gnm1.TW7L.yml b/Glycine/max/genomes/JD17.gnm1.TW7L/README.JD17.gnm1.TW7L.yml index 7a25f871..abb42ee6 100644 --- a/Glycine/max/genomes/JD17.gnm1.TW7L/README.JD17.gnm1.TW7L.yml +++ b/Glycine/max/genomes/JD17.gnm1.TW7L/README.JD17.gnm1.TW7L.yml @@ -9,6 +9,8 @@ synopsis: "Glycine max accession Jidou 17 (JD17), genome assembly 1" scientific_name: Glycine max +scientific_name_abbrev: glyma + taxid: 3847 genotype: @@ -43,4 +45,3 @@ public_access_level: public license: Open, with usage agreement keywords: soybean, JD17, Jidou 17 - From 001c17204e7adbdfef7c4c1c7021e40db8408c11 Mon Sep 17 00:00:00 2001 From: Sam Hokin Date: Wed, 27 Sep 2023 14:26:01 -0600 Subject: [PATCH 26/57] Updated gene_models_main therefore MD5. --- .../Cameor.gnm1.ann1.7SZR/CHECKSUM.Cameor.gnm1.ann1.7SZR.md5 | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/CHECKSUM.Cameor.gnm1.ann1.7SZR.md5 b/Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/CHECKSUM.Cameor.gnm1.ann1.7SZR.md5 index e583f981..75ff5fac 100644 --- a/Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/CHECKSUM.Cameor.gnm1.ann1.7SZR.md5 +++ b/Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/CHECKSUM.Cameor.gnm1.ann1.7SZR.md5 @@ -1,4 +1,4 @@ -f02318395c1323469e8763b8e283a801 ./pissa.Cameor.gnm1.ann1.7SZR.gene_models_main.gff3.gz +7fcd6de969b884fd3cde655fd78c7bcb ./pissa.Cameor.gnm1.ann1.7SZR.gene_models_main.gff3.gz 87f911a653d538de312da1b8ad1935bc ./pissa.Cameor.gnm1.ann1.7SZR.mrna_primary.fna.gz d4b56535e0f2610fe67f6057ac593000 ./pissa.Cameor.gnm1.ann1.7SZR.protein_primary.faa.gz.gzi 1ad9737b1548c01dd2493429ef3b5c5b ./pissa.Cameor.gnm1.ann1.7SZR.mrna.fna.gz.fai From 87b245069bab931a9372fb9217c0c9015c1b4156 Mon Sep 17 00:00:00 2001 From: Sam Hokin Date: Wed, 27 Sep 2023 14:44:55 -0600 Subject: [PATCH 27/57] Sorted GFF so new MD5. --- .../Cameor.gnm1.ann1.7SZR/CHECKSUM.Cameor.gnm1.ann1.7SZR.md5 | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/CHECKSUM.Cameor.gnm1.ann1.7SZR.md5 b/Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/CHECKSUM.Cameor.gnm1.ann1.7SZR.md5 index 75ff5fac..f389dd23 100644 --- a/Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/CHECKSUM.Cameor.gnm1.ann1.7SZR.md5 +++ b/Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/CHECKSUM.Cameor.gnm1.ann1.7SZR.md5 @@ -1,4 +1,4 @@ -7fcd6de969b884fd3cde655fd78c7bcb ./pissa.Cameor.gnm1.ann1.7SZR.gene_models_main.gff3.gz +4390ff29124e12375020d8509a8876c5 ./pissa.Cameor.gnm1.ann1.7SZR.gene_models_main.gff3.gz 87f911a653d538de312da1b8ad1935bc ./pissa.Cameor.gnm1.ann1.7SZR.mrna_primary.fna.gz d4b56535e0f2610fe67f6057ac593000 ./pissa.Cameor.gnm1.ann1.7SZR.protein_primary.faa.gz.gzi 1ad9737b1548c01dd2493429ef3b5c5b ./pissa.Cameor.gnm1.ann1.7SZR.mrna.fna.gz.fai From 15f0384b41c14a95e5ae9ccd213b63f39d9e9cb0 Mon Sep 17 00:00:00 2001 From: Sam Hokin Date: Wed, 4 Oct 2023 11:39:17 -0600 Subject: [PATCH 28/57] New Tifrunner expression set from Clevenger, et al. --- ...nm2.ann2.expr.Tifrunner.Clevenger_2016.yml | 33 +++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 Arachis/hypogaea/expression/Tifrunner.gnm2.ann2.expr.Tifrunner.Clevenger_2016/README.Tifrunner.gnm2.ann2.expr.Tifrunner.Clevenger_2016.yml diff --git a/Arachis/hypogaea/expression/Tifrunner.gnm2.ann2.expr.Tifrunner.Clevenger_2016/README.Tifrunner.gnm2.ann2.expr.Tifrunner.Clevenger_2016.yml b/Arachis/hypogaea/expression/Tifrunner.gnm2.ann2.expr.Tifrunner.Clevenger_2016/README.Tifrunner.gnm2.ann2.expr.Tifrunner.Clevenger_2016.yml new file mode 100644 index 00000000..720b9c84 --- /dev/null +++ b/Arachis/hypogaea/expression/Tifrunner.gnm2.ann2.expr.Tifrunner.Clevenger_2016/README.Tifrunner.gnm2.ann2.expr.Tifrunner.Clevenger_2016.yml @@ -0,0 +1,33 @@ +--- +identifier: Tifrunner.gnm2.ann2.expr.Tifrunner.Clevenger_2016 + +scientific_name: Arachis hypogaea + +taxid: 3818 + +scientific_name_abbrev: arahy + +genotype: + - Tifrunner + +synopsis: "A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea" + +description: "The advent of the genome sequences of Arachis duranensis and Arachis ipaensis has ushered in a new era for peanut genomics. With the goal of producing a gene atlas for cultivated peanut (Arachis hypogaea), 22 different tissue types and ontogenies that represent the full development of peanut were sequenced, including a complete reproductive series from flower to peg elongation and peg tip immersion in the soil to fully mature seed. Using a genome-guided assembly pipeline, a homeolog-specific transcriptome assembly for Arachis hypogaea was assembled and its accuracy was validated. The assembly was used to annotate 21 developmental co-expression networks as tools for gene discovery. Using a set of 8816 putative homeologous gene pairs, homeolog expression bias was documented, and although bias was mostly balanced, there were striking differences in expression bias in a tissue-specific context. Over 9000 alterative splicing events and over 6000 non-coding RNAs were further identified and profiled in a developmental context. Together, this work represents a major new resource for cultivated peanut and will be integrated into peanutbase.org as an available resource for all peanut researchers." + +expression_unit: TPM + +bioproject: PRJNA291488 + +sraproject: SRP061833 + +publication_doi: 10.3389/fpls.2016.01446 + +publication_title: "A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea" + +citation: "Josh Clevenger, Ye Chu, Brian Scheffler, Peggy Ozias-Akins, A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea, Front. Plant Sci. (2016)" + +local_file_creation_date: "2023-10-04" + +contributors: "Andrew Farmer, Samuel Hokin" + +license: public From 58bf7d31cdc8218cf28d57c1d9e9fd6b0c4498e1 Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Wed, 4 Oct 2023 15:51:25 -0500 Subject: [PATCH 29/57] redid tabix of gene models main, after encountering JBrowse2 errors. Seems to work now, although I'm a little unclear if it was a real problem with the tbi file. --- .../CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 index 2788a12f..8da534ff 100644 --- a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 +++ b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 @@ -26,7 +26,7 @@ b21a21082fce168ebf72bcc22c03e93f ./arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.f 3f1774a04664c6535c4c1af4d2c41ba4 ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna_lowqual.fna.gz.gzi f8874af162a950fc0742382c7ab46498 ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.bed.gz.tbi a2d800f1a63197a074d280952910ed56 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa.gz.fai -fe280da9fa60287ffc3af209f38ef96f ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.gff3.gz.tbi +a41826b12f6a36bf83bbebb89ba7c211 ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.gff3.gz.tbi d4d3c22f533a3805056949bf31b97016 ./BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.short_summary.json dd178b9401c214e445db7fa997db60b4 ./BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.full_table.tsv.gz 77d2ebeaaf850c63eade93bd8931b5c8 ./BUSCO/arahy.Tifrunner.gnm2.ann2.PVFB.busco.fabales_odb10.short_summary.txt From 94f54b2d34463330f0963d4edf8962e935d6551c Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Tue, 10 Oct 2023 01:53:09 -0500 Subject: [PATCH 30/57] changes to lotus gff for https://github.com/legumeinfo/datastore-issues/issues/168 --- .../CHECKSUM.MG20.gnm3.ann1.WF9B.md5 | 12 ++++++++---- 1 file changed, 8 insertions(+), 4 deletions(-) diff --git a/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 b/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 index bb965ea0..4bdcdbb1 100644 --- a/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 +++ b/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 @@ -6,16 +6,20 @@ a94d0a2a457e1a91dd0567ebb5af4aad ./MANIFEST.MG20.gnm3.ann1.WF9B.descriptions.ym 6abb20bed1d11f3c32e389ffe3009f70 ./BUSCO/lotja.MG20.gnm3.ann1.WF9B.busco.fabales_odb10.short_summary.json af48a6a3067676e64bbe5feccc8bf82c ./BUSCO/lotja.MG20.gnm3.ann1.WF9B.busco.fabales_odb10.full_table.tsv.gz 94540a0f478549c95d66116f2fd22e20 ./BUSCO/lotja.MG20.gnm3.ann1.WF9B.busco.fabales_odb10.short_summary.txt -8a694a9c8a4f49c35ad393636bcc5e0a ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.gz.tbi +be4d39d7d00827e593086c42670f774b ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.gz.tbi 0f4b8875dc5eac37ab04067d9ac353bd ./lotja.MG20.gnm3.ann1.WF9B.cds.fna.gz.fai bae609ed62c4a2430a23c6b39fe98a78 ./lotja.MG20.gnm3.ann1.WF9B.protein_primary.faa.gz.gzi bcf6571e9602ea2571cb96104cebc911 ./lotja.MG20.gnm3.ann1.WF9B.cds_primary.fna.gz.fai +aa47dea5dee7778458ad1cc83c2b652f ./lotja.MG20.gnm3.ann1.WF9B.low_quality_genes.gff3.gz +0e4fd02f6d710422fdb620f596bfa324 ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3 04ca2a7feefa865c2cce950f9ef777d9 ./MANIFEST.MG20.gnm3.ann1.WF9B.correspondence.yml bd8912360530a39594ca0b90d4518739 ./lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz.gzi d29e6d07b271ca7fcab508fd40ccfb92 ./lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz.gzi -5bd9d86e03c73fd0d3e98072828a6fe8 ./CHANGES.MG20.gnm3.ann1.WF9B.txt +7805202b1ce34186b7d836ce8cd0c293 ./CHANGES.MG20.gnm3.ann1.WF9B.txt +5f4bc6e677dc46f6a3f057d4c86b2ca5 ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.yuckified_only +03a24fbb00fc465fb61bafbce30017fa ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.iprscan_updated a479089148a37e1f12cb821ca226ed27 ./README.MG20.gnm3.ann1.WF9B.yml -c8946f0cccc02b355972b999ac28966e ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.gz +69b9679a0c98087c7feffaf25e39c05c ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.gz 14494f897352153ccf78b0d58098f028 ./lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz.fai 10d099ed82e17814e42d59639d23bca5 ./lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz.fai 5a31d9512c4d06a3f2f0ba5483481364 ./lotja.MG20.gnm3.ann1.WF9B.protein_primary.faa.gz.fai @@ -24,11 +28,11 @@ c8946f0cccc02b355972b999ac28966e ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.g edcd471f6581812b06a2689de9765d0c ./lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz 3ca43ad5258c870a7a634850bcb8262b ./lotja.MG20.gnm3.ann1.WF9B.cds.fna.gz.gzi c19427187eff0d55d6b3cf107343e356 ./lotja.MG20.gnm3.ann1.WF9B.cds_primary.fna.gz +111a042d11c407346ea7a0565ea04ce0 ./lotja.MG20.gnm3.ann1.WF9B.low_quality_genes.gff3.gz.tbi a89c30ad3c5bb3053d73ffcebfd4dd5c ./lotja.MG20.gnm3.ann1.WF9B.cds.bed.gz 39d773fcbe553bbd9d27b37d25cc7956 ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz 701e5248fb4d2e5ba1ed96e240097d92 ./lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz 90af351bb871b8015cc6d2b93ba34082 ./busco/lotja.MG20.gnm3.ann1.WF9B.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.lotja.MG20.gnm3.ann1.WF9B.protein_primaryTranscript.faa.gz_busco.txt 8b9080a966db35006b229c98419df296 ./busco/lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz_busco.txt 121aa11ce7e9c105da1d740412a43105 ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz.gzi -db709fbbb34b79a86ae9af5da52ca221 ./lotja.MG20.gnm3.ann1.WF9B.legfed_v1_0.M65K.pathway.tsv.gz 4e67c29201e0785618471f9b8bf5ee23 ./lotja.MG20.gnm3.ann1.WF9B.cds.bed.gz.tbi From c3d71a20d7da55c8a82a617c2b4d3e11f9fb7253 Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Tue, 10 Oct 2023 01:54:35 -0500 Subject: [PATCH 31/57] removed erroneously added files --- .../MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 | 2 -- 1 file changed, 2 deletions(-) diff --git a/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 b/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 index 4bdcdbb1..bc2466b0 100644 --- a/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 +++ b/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 @@ -16,8 +16,6 @@ aa47dea5dee7778458ad1cc83c2b652f ./lotja.MG20.gnm3.ann1.WF9B.low_quality_genes. bd8912360530a39594ca0b90d4518739 ./lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz.gzi d29e6d07b271ca7fcab508fd40ccfb92 ./lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz.gzi 7805202b1ce34186b7d836ce8cd0c293 ./CHANGES.MG20.gnm3.ann1.WF9B.txt -5f4bc6e677dc46f6a3f057d4c86b2ca5 ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.yuckified_only -03a24fbb00fc465fb61bafbce30017fa ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.iprscan_updated a479089148a37e1f12cb821ca226ed27 ./README.MG20.gnm3.ann1.WF9B.yml 69b9679a0c98087c7feffaf25e39c05c ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.gz 14494f897352153ccf78b0d58098f028 ./lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz.fai From 63dc17d8f8359ff9e438bc8178db89c32d015f95 Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Tue, 10 Oct 2023 01:56:35 -0500 Subject: [PATCH 32/57] added iprscans to CHECKSUM --- .../MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 | 2 ++ 1 file changed, 2 insertions(+) diff --git a/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 b/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 index bc2466b0..90902ba6 100644 --- a/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 +++ b/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 @@ -7,9 +7,11 @@ a94d0a2a457e1a91dd0567ebb5af4aad ./MANIFEST.MG20.gnm3.ann1.WF9B.descriptions.ym af48a6a3067676e64bbe5feccc8bf82c ./BUSCO/lotja.MG20.gnm3.ann1.WF9B.busco.fabales_odb10.full_table.tsv.gz 94540a0f478549c95d66116f2fd22e20 ./BUSCO/lotja.MG20.gnm3.ann1.WF9B.busco.fabales_odb10.short_summary.txt be4d39d7d00827e593086c42670f774b ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.gz.tbi +29c2a503c3f5ecf5d0319474be638faf ./lotja.MG20.gnm3.ann1.WF9B.iprscan.gff3.gz 0f4b8875dc5eac37ab04067d9ac353bd ./lotja.MG20.gnm3.ann1.WF9B.cds.fna.gz.fai bae609ed62c4a2430a23c6b39fe98a78 ./lotja.MG20.gnm3.ann1.WF9B.protein_primary.faa.gz.gzi bcf6571e9602ea2571cb96104cebc911 ./lotja.MG20.gnm3.ann1.WF9B.cds_primary.fna.gz.fai +fff8da64f2ca1049414955cc900c8dd3 ./lotja.MG20.gnm3.ann1.WF9B.iprscan.gff3.gz.tbi aa47dea5dee7778458ad1cc83c2b652f ./lotja.MG20.gnm3.ann1.WF9B.low_quality_genes.gff3.gz 0e4fd02f6d710422fdb620f596bfa324 ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3 04ca2a7feefa865c2cce950f9ef777d9 ./MANIFEST.MG20.gnm3.ann1.WF9B.correspondence.yml From 729e96cc726e24a66ae5ec703977222735821e67 Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Tue, 10 Oct 2023 02:08:02 -0500 Subject: [PATCH 33/57] partition mrna files for low quality --- .../MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 b/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 index 90902ba6..3b6a0a6c 100644 --- a/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 +++ b/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 @@ -1,5 +1,5 @@ 32b50f4c3f40a03060ffd68d694b11b8 ./lotja.MG20.gnm3.ann1.WF9B.phytozome_10_2.HFNR.gfa.tsv.gz -1990c263fca8a2dd3e11e237e98e538b ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz.fai +c5bc2255302e295b1cb881477292e49b ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz.fai d8414faa697d19526b4f8d561ab2057c ./lotja.MG20.gnm3.ann1.WF9B.cds.fna.gz a94d0a2a457e1a91dd0567ebb5af4aad ./MANIFEST.MG20.gnm3.ann1.WF9B.descriptions.yml 178d6d4771232495fb8c6ce4b1380c30 ./lotja.MG20.gnm3.ann1.WF9B.legfed_v1_0.M65K.gfa.tsv.gz @@ -7,6 +7,7 @@ a94d0a2a457e1a91dd0567ebb5af4aad ./MANIFEST.MG20.gnm3.ann1.WF9B.descriptions.ym af48a6a3067676e64bbe5feccc8bf82c ./BUSCO/lotja.MG20.gnm3.ann1.WF9B.busco.fabales_odb10.full_table.tsv.gz 94540a0f478549c95d66116f2fd22e20 ./BUSCO/lotja.MG20.gnm3.ann1.WF9B.busco.fabales_odb10.short_summary.txt be4d39d7d00827e593086c42670f774b ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.gz.tbi +d8371d190f4a02434bfa5c70811bce07 ./lotja.MG20.gnm3.ann1.WF9B.low_quality_transcript.fna.gz 29c2a503c3f5ecf5d0319474be638faf ./lotja.MG20.gnm3.ann1.WF9B.iprscan.gff3.gz 0f4b8875dc5eac37ab04067d9ac353bd ./lotja.MG20.gnm3.ann1.WF9B.cds.fna.gz.fai bae609ed62c4a2430a23c6b39fe98a78 ./lotja.MG20.gnm3.ann1.WF9B.protein_primary.faa.gz.gzi @@ -18,7 +19,9 @@ aa47dea5dee7778458ad1cc83c2b652f ./lotja.MG20.gnm3.ann1.WF9B.low_quality_genes. bd8912360530a39594ca0b90d4518739 ./lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz.gzi d29e6d07b271ca7fcab508fd40ccfb92 ./lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz.gzi 7805202b1ce34186b7d836ce8cd0c293 ./CHANGES.MG20.gnm3.ann1.WF9B.txt +59ee78058292cba9dfdd256d0a9e8199 ./lotja.MG20.gnm3.ann1.WF9B.low_quality_transcript.fna.gz.gzi a479089148a37e1f12cb821ca226ed27 ./README.MG20.gnm3.ann1.WF9B.yml +bd2eac01e3a575e751d1bc5097ab270f ./lotja.MG20.gnm3.ann1.WF9B.low_quality_transcript.fna.gz.fai 69b9679a0c98087c7feffaf25e39c05c ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.gz 14494f897352153ccf78b0d58098f028 ./lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz.fai 10d099ed82e17814e42d59639d23bca5 ./lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz.fai @@ -30,9 +33,9 @@ edcd471f6581812b06a2689de9765d0c ./lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz c19427187eff0d55d6b3cf107343e356 ./lotja.MG20.gnm3.ann1.WF9B.cds_primary.fna.gz 111a042d11c407346ea7a0565ea04ce0 ./lotja.MG20.gnm3.ann1.WF9B.low_quality_genes.gff3.gz.tbi a89c30ad3c5bb3053d73ffcebfd4dd5c ./lotja.MG20.gnm3.ann1.WF9B.cds.bed.gz -39d773fcbe553bbd9d27b37d25cc7956 ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz +4f0eab280c3d45280a0e3f4568a3a3d9 ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz 701e5248fb4d2e5ba1ed96e240097d92 ./lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz 90af351bb871b8015cc6d2b93ba34082 ./busco/lotja.MG20.gnm3.ann1.WF9B.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.lotja.MG20.gnm3.ann1.WF9B.protein_primaryTranscript.faa.gz_busco.txt 8b9080a966db35006b229c98419df296 ./busco/lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz_busco.txt -121aa11ce7e9c105da1d740412a43105 ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz.gzi +8932bdd1a21c4e766eda349f68d59f43 ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz.gzi 4e67c29201e0785618471f9b8bf5ee23 ./lotja.MG20.gnm3.ann1.WF9B.cds.bed.gz.tbi From 0078cc95dd66282bd7c1cece30327730073de32a Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Tue, 10 Oct 2023 02:09:51 -0500 Subject: [PATCH 34/57] remove uncompressed file --- .../MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 | 1 - 1 file changed, 1 deletion(-) diff --git a/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 b/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 index 3b6a0a6c..bee1611d 100644 --- a/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 +++ b/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 @@ -14,7 +14,6 @@ bae609ed62c4a2430a23c6b39fe98a78 ./lotja.MG20.gnm3.ann1.WF9B.protein_primary.fa bcf6571e9602ea2571cb96104cebc911 ./lotja.MG20.gnm3.ann1.WF9B.cds_primary.fna.gz.fai fff8da64f2ca1049414955cc900c8dd3 ./lotja.MG20.gnm3.ann1.WF9B.iprscan.gff3.gz.tbi aa47dea5dee7778458ad1cc83c2b652f ./lotja.MG20.gnm3.ann1.WF9B.low_quality_genes.gff3.gz -0e4fd02f6d710422fdb620f596bfa324 ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3 04ca2a7feefa865c2cce950f9ef777d9 ./MANIFEST.MG20.gnm3.ann1.WF9B.correspondence.yml bd8912360530a39594ca0b90d4518739 ./lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz.gzi d29e6d07b271ca7fcab508fd40ccfb92 ./lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz.gzi From 69e66ab227f5cf68a561081f9fb8b45af46292da Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Tue, 10 Oct 2023 23:22:46 -0500 Subject: [PATCH 35/57] added BUSCO for arahy.BaileyII.gnm1 --- ...JTF.busco.fabales_odb10.short_summary.json | 62 +++++++++++++++++++ .../CHECKSUM.BaileyII.gnm1.1JTF.md5 | 5 +- 2 files changed, 66 insertions(+), 1 deletion(-) create mode 100644 Arachis/hypogaea/genomes/BaileyII.gnm1.1JTF/BUSCO/arahy.BaileyII.gnm1.1JTF.busco.fabales_odb10.short_summary.json diff --git a/Arachis/hypogaea/genomes/BaileyII.gnm1.1JTF/BUSCO/arahy.BaileyII.gnm1.1JTF.busco.fabales_odb10.short_summary.json b/Arachis/hypogaea/genomes/BaileyII.gnm1.1JTF/BUSCO/arahy.BaileyII.gnm1.1JTF.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..24c56f1a --- /dev/null +++ b/Arachis/hypogaea/genomes/BaileyII.gnm1.1JTF/BUSCO/arahy.BaileyII.gnm1.1JTF.busco.fabales_odb10.short_summary.json @@ -0,0 +1,62 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.CgKb5B/arahy.BaileyII.gnm1.1JTF.genome_main.fna", + "out": "BUSCO_genome_fabales_odb10", + "mode": "euk_genome_met", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_genome_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota", + "max_intron": "90000", + "max_seq_len": "120000", + "metaeuk_parameters": "", + "metaeuk_rerun_parameters": "", + "contig_break": "10", + "scaffold_composition": "False", + "gene_predictor": "metaeuk" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "bbtools": "38.96", + "metaeuk": "5.34c21f2", + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:97.6%[S:5.2%,D:92.4%],F:0.3%,M:2.1%,n:5366", + "Complete": 97.6, + "Single copy": 5.2, + "Multi copy": 92.4, + "Fragmented": 0.3, + "Missing": 2.1, + "n_markers": 5366, + "domain": "eukaryota", + "Number of scaffolds": "426", + "Number of contigs": "1004", + "Total length": "2555804451", + "Percent gaps": "0.222%", + "Scaffold N50": "136833719", + "Contigs N50": "17573708" + } +} \ No newline at end of file diff --git a/Arachis/hypogaea/genomes/BaileyII.gnm1.1JTF/CHECKSUM.BaileyII.gnm1.1JTF.md5 b/Arachis/hypogaea/genomes/BaileyII.gnm1.1JTF/CHECKSUM.BaileyII.gnm1.1JTF.md5 index 19f2cacd..c05df7ad 100644 --- a/Arachis/hypogaea/genomes/BaileyII.gnm1.1JTF/CHECKSUM.BaileyII.gnm1.1JTF.md5 +++ b/Arachis/hypogaea/genomes/BaileyII.gnm1.1JTF/CHECKSUM.BaileyII.gnm1.1JTF.md5 @@ -1,6 +1,9 @@ b81aff238e3527db5932cf228721f746 ./MANIFEST.BaileyII.gnm1.1JTF.descriptions.yml 339c76d46047ffa0b6f78b1d9f24ac5d ./arahy.BaileyII.gnm1.1JTF.genome_main.fna.gz.gzi -962304dee6cc802157d159cdd996796c ./README.BaileyII.gnm1.1JTF.yml +fcb78ecc8374b3b24651f01cc2943496 ./BUSCO/arahy.BaileyII.gnm1.1JTF.busco.fabales_odb10.short_summary.txt +c835629fc867c84546a847cf5f0a76b7 ./BUSCO/arahy.BaileyII.gnm1.1JTF.busco.fabales_odb10.full_table.tsv.gz +aeef0808620e8106b0e57cef4f825b9e ./BUSCO/arahy.BaileyII.gnm1.1JTF.busco.fabales_odb10.short_summary.json +0c53b7171d3a7b42a9d4d16e28e15567 ./README.BaileyII.gnm1.1JTF.yml 54c47784d1f2decd3cd65e725631523f ./arahy.BaileyII.gnm1.1JTF.seqid_map.tsv.gz bbdad5f637a925ed0368652d4d2ba993 ./CHANGES.BaileyII.gnm1.1JTF.txt 5e66abe886f91d5b3e6b51839fac3770 ./MANIFEST.BaileyII.gnm1.1JTF.correspondence.yml From 06ff23fa5c3dc53ea2cdf90f95b5eba96c2c3750 Mon Sep 17 00:00:00 2001 From: Steven Cannon Date: Wed, 11 Oct 2023 13:25:13 -0500 Subject: [PATCH 36/57] Update Arachis pangene md5 --- .../Arachis.pan2.5P1K/CHECKSUM.Arachis.pan2.5P1K.md5 | 8 ++++++++ 1 file changed, 8 insertions(+) create mode 100644 Arachis/GENUS/pangenes/Arachis.pan2.5P1K/CHECKSUM.Arachis.pan2.5P1K.md5 diff --git a/Arachis/GENUS/pangenes/Arachis.pan2.5P1K/CHECKSUM.Arachis.pan2.5P1K.md5 b/Arachis/GENUS/pangenes/Arachis.pan2.5P1K/CHECKSUM.Arachis.pan2.5P1K.md5 new file mode 100644 index 00000000..6c596cc1 --- /dev/null +++ b/Arachis/GENUS/pangenes/Arachis.pan2.5P1K/CHECKSUM.Arachis.pan2.5P1K.md5 @@ -0,0 +1,8 @@ +c078dcf98a85c3f04d71300d5830e167 Arachis.pan2.5P1K.clust.tsv.gz +ed4a26b1c5d762aea6ce352e7b95f0de Arachis.pan2.5P1K.complement.fna.gz +fbb04a017e6d09b40c3092ac90b43740 Arachis.pan2.5P1K.counts.tsv.gz +d13f12b4febde6a8f801855c5b543356 Arachis.pan2.5P1K.hsh.tsv.gz +303ecd6b1810bb52ad4793e038de2177 Arachis.pan2.5P1K.inclusive_cds.fna.gz +6969661a8655bd1e7d1c9ae76f913903 Arachis.pan2.5P1K.inclusive_protein.faa.gz +f574d2f48719760685fcd6cbb877f2c3 Arachis.pan2.5P1K.pctl40_named_cds.fna.gz +5e569f186612f2681f477fff34859231 Arachis.pan2.5P1K.pctl40_named_protein.faa.gz From 206779a9b4161926f6f01703ac49086e6dbfeb4a Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Thu, 12 Oct 2023 09:50:37 -0500 Subject: [PATCH 37/57] updated gfa file (for genes rescued from low quality pile) --- .../CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 index 8da534ff..661542a0 100644 --- a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 +++ b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 @@ -12,7 +12,7 @@ f01eeb8191925d71424ddc48dd9e6cf3 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa.g 3621003e797ac7011738e451848d2acd ./arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz d17728cc393fd58f1121dca958034063 ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna.fna.gz.fai 2f5ff665bfbf1618be0c469b51759ef5 ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_lowqual.bed.gz -646fe6c6b0921f6ef804eb227a87cedd ./CHANGES.Tifrunner.gnm2.ann2.PVFB.txt +35c6c57f8ee3f32f44afd2e58911de37 ./CHANGES.Tifrunner.gnm2.ann2.PVFB.txt 86aa9c488206a4fff4cd9d24a918d247 ./arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz 683c05e2e08c2132a18832a80185107c ./MANIFEST.Tifrunner.gnm2.ann2.PVFB.descriptions.yml a90461b9c01b6e87ec08a8a0b2b583db ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.bed.gz @@ -22,7 +22,7 @@ df4085fb64f6de082c7b754ee391029b ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_l 27f1299574992abeec3c2bd59c10cdac ./arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz.gzi d33ed45b5d9ac633cbda2ce7534caa8b ./arahy.Tifrunner.gnm2.ann2.PVFB.featid_map.tsv.gz b21a21082fce168ebf72bcc22c03e93f ./arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz.fai -9edc022a4e9894054e2d37f123eaad7b ./arahy.Tifrunner.gnm2.ann2.PVFB.legfed_v1_0.M65K.gfa.tsv.gz +c9f66ab47f925f756b383e1b9cba87ae ./arahy.Tifrunner.gnm2.ann2.PVFB.legfed_v1_0.M65K.gfa.tsv.gz 3f1774a04664c6535c4c1af4d2c41ba4 ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna_lowqual.fna.gz.gzi f8874af162a950fc0742382c7ab46498 ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.bed.gz.tbi a2d800f1a63197a074d280952910ed56 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein.faa.gz.fai From ebb8a8e741b81e20d6f822ee5b85d9153d4231e5 Mon Sep 17 00:00:00 2001 From: sdash-github Date: Thu, 12 Oct 2023 11:50:30 -0600 Subject: [PATCH 38/57] Tifrunner gnm2.ann2 NCBI link added --- .../about_this_collection/description_Arachis_hypogaea.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/Arachis/hypogaea/about_this_collection/description_Arachis_hypogaea.yml b/Arachis/hypogaea/about_this_collection/description_Arachis_hypogaea.yml index 36ec45ce..015f5ace 100644 --- a/Arachis/hypogaea/about_this_collection/description_Arachis_hypogaea.yml +++ b/Arachis/hypogaea/about_this_collection/description_Arachis_hypogaea.yml @@ -45,6 +45,9 @@ strains: - name: PeanutBase Genome Browser (GBrowse) URL: "https://legacy.peanutbase.org/gb2/gbrowse/arahy.Tifrunner.gnm2/" description: "GBrowse for Tifrunner assembly 2.0" + - name: NCBI Tifrunner assembly 2.0 + URL: "https://www.ncbi.nlm.nih.gov/nuccore/PIVG00000000" + description: "Tifrunner gnm2.ann2 (assembly 2.0 annotation 2.0) at NCBI" - name: LIS SequenceServer URL: "https://www.peanutbase.org/tools/sequenceserver/" description: "SequenceServer BLAST against the Tifrunner v2 assembly" From 19e690bfc37ccacdfcd440b4fdb058734dc2001b Mon Sep 17 00:00:00 2001 From: Steven Cannon Date: Wed, 18 Oct 2023 15:16:43 -0500 Subject: [PATCH 39/57] Remove two bogus protein.fna files and update CHECKSUM accordingly --- .../CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 | 2 -- 1 file changed, 2 deletions(-) diff --git a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 index 661542a0..5c4f1e9b 100644 --- a/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 +++ b/Arachis/hypogaea/annotations/Tifrunner.gnm2.ann2.PVFB/CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 @@ -1,7 +1,6 @@ 0ff63f981b328fd531d77776ba825d62 ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.gff3.gz a24e1751710154b1536b8edb8e458656 ./arahy.Tifrunner.gnm2.ann2.PVFB.cds.fna.gz.fai 9e1bf4bc9cbf4d6a07b4a6bb367468ae ./arahy.Tifrunner.gnm2.ann2.PVFB.iprscan.gff3.gz -709872fc2910431b1e8b7074bfe38c67 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.fna.gz b78de65b05bc80a5cb7264ad13b2ec3c ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna_lowqual.fna.gz.fai ae47baad0a228ba413944965af18e073 ./arahy.Tifrunner.gnm2.ann2.PVFB.cds_lowqual.fna.gz.gzi 43319e3bff849f45a6a12880e986e4e0 ./README.Tifrunner.gnm2.ann2.PVFB.yml @@ -17,7 +16,6 @@ d17728cc393fd58f1121dca958034063 ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna.fna.gz.f 683c05e2e08c2132a18832a80185107c ./MANIFEST.Tifrunner.gnm2.ann2.PVFB.descriptions.yml a90461b9c01b6e87ec08a8a0b2b583db ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_main.bed.gz 0eda55ea32630283e27634e228c54a2e ./arahy.Tifrunner.gnm2.ann2.PVFB.mrna.fna.gz.gzi -709872fc2910431b1e8b7074bfe38c67 ./arahy.Tifrunner.gnm2.ann2.PVFB.protein.fna.gz df4085fb64f6de082c7b754ee391029b ./arahy.Tifrunner.gnm2.ann2.PVFB.gene_models_lowqual.gff3.gz.tbi 27f1299574992abeec3c2bd59c10cdac ./arahy.Tifrunner.gnm2.ann2.PVFB.protein_lowqual.faa.gz.gzi d33ed45b5d9ac633cbda2ce7534caa8b ./arahy.Tifrunner.gnm2.ann2.PVFB.featid_map.tsv.gz From 0b6eee1ce8a3fde919ed6603e071670afbee34db Mon Sep 17 00:00:00 2001 From: Steven Cannon Date: Thu, 26 Oct 2023 11:23:47 -0500 Subject: [PATCH 40/57] Add genome assembly for Phaseolus vulgaris accession OAC Rex --- .../description_Phaseolus_vulgaris.yml | 5 +++ .../README.OACRex.gnm2.NXJW.yml | 38 +++++++++++++++++++ 2 files changed, 43 insertions(+) create mode 100644 Phaseolus/vulgaris/genomes/OACRex.gnm2.NXJW/README.OACRex.gnm2.NXJW.yml diff --git a/Phaseolus/vulgaris/about_this_collection/description_Phaseolus_vulgaris.yml b/Phaseolus/vulgaris/about_this_collection/description_Phaseolus_vulgaris.yml index ceba29dc..15bbee9d 100644 --- a/Phaseolus/vulgaris/about_this_collection/description_Phaseolus_vulgaris.yml +++ b/Phaseolus/vulgaris/about_this_collection/description_Phaseolus_vulgaris.yml @@ -39,6 +39,11 @@ strains: name: Labor Ovalle origin: Institute of Agricultural Science and Technology (ICTA) description: "Guatemalan highlands landrace improved by selection; round-seeded Bolonilio market class bean." + - identifier: OACRex + accession: OACRex + name: OAC Rex + origin: Department of Plant Agriculture, University of Guelph, Guelph, Ontario. + description: "OAC Rex is a white-seeded, high-yielding cultivar intended for production in Canada, and is the first common bean cultivar resistant to common bacterial blight." - identifier: 5-593 accession: PI 608674 name: 5-593 diff --git a/Phaseolus/vulgaris/genomes/OACRex.gnm2.NXJW/README.OACRex.gnm2.NXJW.yml b/Phaseolus/vulgaris/genomes/OACRex.gnm2.NXJW/README.OACRex.gnm2.NXJW.yml new file mode 100644 index 00000000..cc0aa8c3 --- /dev/null +++ b/Phaseolus/vulgaris/genomes/OACRex.gnm2.NXJW/README.OACRex.gnm2.NXJW.yml @@ -0,0 +1,38 @@ +--- +identifier: OACRex.gnm2.NXJW + +provenance: "The files in this directory were received for direct deposit at the legumeinfo.org Data Store by Drs. and Gregory Perry and Peter Pauls. The files here are held as part of the LegumeInfo and SoyBase projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo and SoyBase projects. If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please respect any usage restrictions in the present and original repositories, and cite the data appropriately." + +source: "https://www.plant.uoguelph.ca/ppauls" + +synopsis: "Phaseolus vulgaris accession OACRex, genome assembly 2" + +scientific_name: Phaseolus vulgaris + +taxid: 3885 + +genotype: + - OACRex + +chromosome_prefix: Chr + +supercontig_prefix: scaffold + +description: "Genome assembly for OAC Rex is a white-seeded, high-yielding cultivar, with resistance to common bacterial blight." + +original_file_creation_date: "2023-06-01" + +local_file_creation_date: "2023-10-24" + +dataset_release_date: "2023-11-01" + +contributors: Gregory Perry, Peter Pauls + +data_curators: Steven Cannon + +public_access_level: public + +license: Open, with usage agreement + +keywords: common bean, OAC Rex + From c552799a4d2b7deef1099b840af419fa2f05d354 Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Mon, 30 Oct 2023 16:36:27 -0500 Subject: [PATCH 41/57] BUSCO for phavu.OACRex.gnm2 --- ...XJW.busco.fabales_odb10.short_summary.json | 62 +++++++++++++++++++ .../CHECKSUM.OACRex.gnm2.NXJW.md5 | 11 ++++ 2 files changed, 73 insertions(+) create mode 100644 Phaseolus/vulgaris/genomes/OACRex.gnm2.NXJW/BUSCO/phavu.OACRex.gnm2.NXJW.busco.fabales_odb10.short_summary.json create mode 100644 Phaseolus/vulgaris/genomes/OACRex.gnm2.NXJW/CHECKSUM.OACRex.gnm2.NXJW.md5 diff --git a/Phaseolus/vulgaris/genomes/OACRex.gnm2.NXJW/BUSCO/phavu.OACRex.gnm2.NXJW.busco.fabales_odb10.short_summary.json b/Phaseolus/vulgaris/genomes/OACRex.gnm2.NXJW/BUSCO/phavu.OACRex.gnm2.NXJW.busco.fabales_odb10.short_summary.json new file mode 100644 index 00000000..034e94e5 --- /dev/null +++ b/Phaseolus/vulgaris/genomes/OACRex.gnm2.NXJW/BUSCO/phavu.OACRex.gnm2.NXJW.busco.fabales_odb10.short_summary.json @@ -0,0 +1,62 @@ +{ + "parameters": { + "out_path": "/busco_wd", + "cpu": "16", + "force": "False", + "restart": "False", + "quiet": "False", + "download_path": "/erdos/adf/busco_downloads", + "datasets_version": "odb10", + "offline": "False", + "download_base_url": "https://busco-data.ezlab.org/v5/data/", + "auto-lineage": "False", + "auto-lineage-prok": "False", + "auto-lineage-euk": "False", + "update-data": "False", + "use_augustus": "False", + "batch_mode": "False", + "tar": "False", + "in": "/busco_wd/run_busco.bash.eCOFPy/phavu.OACRex.gnm2.NXJW.genome_main.fna", + "out": "BUSCO_genome_fabales_odb10", + "mode": "euk_genome_met", + "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", + "main_out": "/busco_wd/BUSCO_genome_fabales_odb10", + "lineage_results_dir": "run_fabales_odb10", + "domain": "eukaryota", + "max_intron": "90000", + "max_seq_len": "120000", + "metaeuk_parameters": "", + "metaeuk_rerun_parameters": "", + "contig_break": "10", + "scaffold_composition": "False", + "gene_predictor": "metaeuk" + }, + "lineage_dataset": { + "name": "fabales_odb10", + "creation_date": "2020-08-05", + "number_of_buscos": "5366", + "number_of_species": "10" + }, + "versions": { + "hmmsearch": 3.1, + "bbtools": "38.96", + "metaeuk": "5.34c21f2", + "busco": "5.4.3" + }, + "results": { + "one_line_summary": "C:98.6%[S:97.1%,D:1.5%],F:0.2%,M:1.2%,n:5366", + "Complete": 98.6, + "Single copy": 97.1, + "Multi copy": 1.5, + "Fragmented": 0.2, + "Missing": 1.2, + "n_markers": 5366, + "domain": "eukaryota", + "Number of scaffolds": "1257", + "Number of contigs": "29039", + "Total length": "423735730", + "Percent gaps": "7.526%", + "Scaffold N50": "37536796", + "Contigs N50": "38868" + } +} \ No newline at end of file diff --git a/Phaseolus/vulgaris/genomes/OACRex.gnm2.NXJW/CHECKSUM.OACRex.gnm2.NXJW.md5 b/Phaseolus/vulgaris/genomes/OACRex.gnm2.NXJW/CHECKSUM.OACRex.gnm2.NXJW.md5 new file mode 100644 index 00000000..79103cb9 --- /dev/null +++ b/Phaseolus/vulgaris/genomes/OACRex.gnm2.NXJW/CHECKSUM.OACRex.gnm2.NXJW.md5 @@ -0,0 +1,11 @@ +b42dd11f9f02be7d6d35bec70633e197 ./CHANGES.OACRex.gnm2.NXJW.txt +dcbb2cf996203d1dc58a850bc94f0b79 ./phavu.OACRex.gnm2.NXJW.genome_main.fna.gz.gzi +6993f6d9e5b25cd694f35f7b9d98aa54 ./phavu.OACRex.gnm2.NXJW.genome_main.fna.gz +e5474e09398c627abda7087272297e41 ./MANIFEST.OACRex.gnm2.NXJW.correspondence.yml +b6a60573e2250c4a0753548ae1ce9fb3 ./MANIFEST.OACRex.gnm2.NXJW.descriptions.yml +738dfe3ed0fb98381c3ea1c418bc8e88 ./phavu.OACRex.gnm2.NXJW.seqid_map.tsv.gz +0af2516cf3b83f0f4cedee4881509cae ./README.OACRex.gnm2.NXJW.yml +0325234b97aee8adaa766e53f22b0429 ./phavu.OACRex.gnm2.NXJW.genome_main.fna.gz.fai +248baf503bda49c8ddb94f5ef02cd4a0 ./BUSCO/phavu.OACRex.gnm2.NXJW.busco.fabales_odb10.short_summary.json +5d005d610a03581efc696b4529dac620 ./BUSCO/phavu.OACRex.gnm2.NXJW.busco.fabales_odb10.short_summary.txt +5cc9591ce69cebeac09446265090ee9e ./BUSCO/phavu.OACRex.gnm2.NXJW.busco.fabales_odb10.full_table.tsv.gz From 11fcad5c8f1e63bdacec426b198a0f6c08d5ae62 Mon Sep 17 00:00:00 2001 From: Steven Cannon Date: Wed, 1 Nov 2023 14:11:23 -0500 Subject: [PATCH 42/57] Add checksum, corresponding with added Glycine.pan4.RK4P.ref_lines_table.tsv.gz --- .../CHECKSUM.Glycine.pan4.RK4P.md5 | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 Glycine/GENUS/pangenes/Glycine.pan4.RK4P/CHECKSUM.Glycine.pan4.RK4P.md5 diff --git a/Glycine/GENUS/pangenes/Glycine.pan4.RK4P/CHECKSUM.Glycine.pan4.RK4P.md5 b/Glycine/GENUS/pangenes/Glycine.pan4.RK4P/CHECKSUM.Glycine.pan4.RK4P.md5 new file mode 100644 index 00000000..03db2b6f --- /dev/null +++ b/Glycine/GENUS/pangenes/Glycine.pan4.RK4P/CHECKSUM.Glycine.pan4.RK4P.md5 @@ -0,0 +1,24 @@ +d124ffaecd607ef654062f76967e6571 CHANGES.Glycine.pan4.RK4P.txt +4fba1054f308b74625adc1ccef129832 Glycine.pan4.RK4P.clust.tsv.gz +c5e4def1a6a8d58732a7f4b7a77c6810 Glycine.pan4.RK4P.complement.fna.gz +29ee255f39f60a526046550bdea12cd9 Glycine.pan4.RK4P.complement.fna.gz.fai +0142339d9b80a6ec08bf5e1d903c9f88 Glycine.pan4.RK4P.complement.fna.gz.gzi +f124d60f42ffcd339b15d30b771fde5f Glycine.pan4.RK4P.counts.tsv.gz +c483acdb691eafe0902a16a967a81103 Glycine.pan4.RK4P.hsh.tsv.gz +6d1b88dbe5132d146cd590513d2d4f0e Glycine.pan4.RK4P.inclusive_cds.fna.gz +27939bf23771d7eb0eee4550543d535a Glycine.pan4.RK4P.inclusive_cds.fna.gz.fai +2493c4b34ad9250f0b25c6b8f1cf9d3a Glycine.pan4.RK4P.inclusive_cds.fna.gz.gzi +b4dc618b812a9ce3226d00f973793103 Glycine.pan4.RK4P.inclusive_protein.faa.gz +73e0617578ec35bd5573062bb95c6882 Glycine.pan4.RK4P.inclusive_protein.faa.gz.fai +9a9e25416e91517597e4ff2f61e04b90 Glycine.pan4.RK4P.inclusive_protein.faa.gz.gzi +5b5780274cef2c7e8064ab56639eacd5 Glycine.pan4.RK4P.pctl25_named_cds.fna.gz +16ad7516bd5e62ac0727de9aea495fec Glycine.pan4.RK4P.pctl25_named_cds.fna.gz.fai +eacad948d44351760ccd4cc1726e32ff Glycine.pan4.RK4P.pctl25_named_cds.fna.gz.gzi +e8649b2418bbd831a347849a11c50878 Glycine.pan4.RK4P.pctl25_named_protein.faa.gz +a330d563e0ea68dc30f52d47341a674d Glycine.pan4.RK4P.pctl25_named_protein.faa.gz.fai +4c95f6e08fb4ebd607818fb976ad79cd Glycine.pan4.RK4P.pctl25_named_protein.faa.gz.gzi +936693d2d9eac0dd724a3248832bc3f9 Glycine.pan4.RK4P.ref_lines_table.tsv.gz +dd806c27bb072ebd44f4bd7e3acae3e8 Glycine.pan4.RK4P.stats.txt +359c066b7a040cd0ef69d18d3c10e331 MANIFEST.Glycine.pan4.RK4P.correspondence.yml +73d6a57dff06b4b838aea642dd85d5c7 MANIFEST.Glycine.pan4.RK4P.descriptions.yml +6faca2b442432fa401e5cf4f8328227b README.Glycine.pan4.RK4P.yml From 5f9300ff10ba4d14f1a2ee6d6e7f98a0c1007b66 Mon Sep 17 00:00:00 2001 From: Sam Hokin Date: Thu, 2 Nov 2023 17:04:20 -0500 Subject: [PATCH 43/57] Moved to the annex in favor of the newer one forthcoming. --- ...WFM.busco.fabales_odb10.short_summary.json | 48 -------------- .../CHECKSUM.MN87.gnm1.ann1.LWFM.md5 | 24 ------- .../README.MN87.gnm1.ann1.LWFM.yml | 47 -------------- ...XFN.busco.fabales_odb10.short_summary.json | 63 ------------------- .../CHECKSUM.MN87.gnm1.JXFN.md5 | 12 ---- .../MN87.gnm1.JXFN/README.MN87.gnm1.JXFN.yml | 49 --------------- 6 files changed, 243 deletions(-) delete mode 100644 Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/BUSCO/chafa.MN87.gnm1.ann1.LWFM.busco.fabales_odb10.short_summary.json delete mode 100644 Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/CHECKSUM.MN87.gnm1.ann1.LWFM.md5 delete mode 100644 Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/README.MN87.gnm1.ann1.LWFM.yml delete mode 100644 Chamaecrista/fasciculata/genomes/MN87.gnm1.JXFN/BUSCO/chafa.MN87.gnm1.JXFN.busco.fabales_odb10.short_summary.json delete mode 100644 Chamaecrista/fasciculata/genomes/MN87.gnm1.JXFN/CHECKSUM.MN87.gnm1.JXFN.md5 delete mode 100644 Chamaecrista/fasciculata/genomes/MN87.gnm1.JXFN/README.MN87.gnm1.JXFN.yml diff --git a/Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/BUSCO/chafa.MN87.gnm1.ann1.LWFM.busco.fabales_odb10.short_summary.json b/Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/BUSCO/chafa.MN87.gnm1.ann1.LWFM.busco.fabales_odb10.short_summary.json deleted file mode 100644 index a105be29..00000000 --- a/Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/BUSCO/chafa.MN87.gnm1.ann1.LWFM.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,48 +0,0 @@ -{ - "parameters": { - "out_path": "/home/adf", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - "batch_mode": "False", - "tar": "False", - "in": "/home/adf/chafa.MN87.gnm1.ann1.LWFM.protein.faa", - "out": "BUSCO_proteins_fabales_odb10", - "mode": "proteins", - "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", - "limit": "10", - "main_out": "/home/adf/BUSCO_proteins_fabales_odb10", - "lineage_results_dir": "run_fabales_odb10", - "domain": "eukaryota" - }, - "lineage_dataset": { - "name": "fabales_odb10", - "creation_date": "2020-08-05", - "number_of_buscos": "5366", - "number_of_species": "10" - }, - "versions": { - "hmmsearch": 3.1, - "busco": "5.4.3" - }, - "results": { - "one_line_summary": "C:82.8%[S:73.1%,D:9.7%],F:0.7%,M:16.5%,n:5366", - "Complete": 82.8, - "Single copy": 73.1, - "Multi copy": 9.7, - "Fragmented": 0.7, - "Missing": 16.5, - "n_markers": 5366, - "domain": "eukaryota" - } -} \ No newline at end of file diff --git a/Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/CHECKSUM.MN87.gnm1.ann1.LWFM.md5 b/Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/CHECKSUM.MN87.gnm1.ann1.LWFM.md5 deleted file mode 100644 index e7a631ac..00000000 --- a/Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/CHECKSUM.MN87.gnm1.ann1.LWFM.md5 +++ /dev/null @@ -1,24 +0,0 @@ -8d1a702149c5bb4b487734ef360b2899 ./chafa.MN87.gnm1.ann1.LWFM.cds.fna.gz.gzi -28b59b375e6f3c19c8d14dccec706c85 ./CHANGES.MN87.gnm1.ann1.LWFM.txt 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./chafa.MN87.gnm1.ann1.LWFM.mrna.fna.gz.fai -1fb6a77e9c752309d404b6e4da5821b9 ./chafa.MN87.gnm1.ann1.LWFM.annot_info.txt.gz -6370c3a5ff62c2a1958c9025cbb1bf67 ./README.MN87.gnm1.ann1.LWFM.yml -f393cf5e4d76319bf1c8c8f39c6ab8b1 ./chafa.MN87.gnm1.ann1.LWFM.protein.faa.gz.fai -04755bf23f4f57106e5dc1943f1dc27d ./chafa.MN87.gnm1.ann1.LWFM.protein.faa.gz.gzi -3cb4964e69d8914ac89c8ebb07728543 ./chafa.MN87.gnm1.ann1.LWFM.cds.bed.gz -98915a6732e23afb1ba715203a862726 ./chafa.MN87.gnm1.ann1.LWFM.mrna.fna.gz.gzi -0bec3cbad136c289a4fbd23a1ba9262d ./chafa.MN87.gnm1.ann1.LWFM.mrna.fna.gz -9ab83901f8572e7298b3beccaf8a858a ./MANIFEST.MN87.gnm1.ann1.LWFM.descriptions.yml -f720732ad3a919de1148f71b7043bf61 ./chafa.MN87.gnm1.ann1.LWFM.cds.fna.gz.fai -7430f87c2c90cc23e24d801d2b5c6066 ./busco/chafa.MN87.gnm1.ann1.LWFM.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.chafa.MN87.gnm1.ann1.LWFM.protein.faa.gz_busco.txt diff --git a/Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/README.MN87.gnm1.ann1.LWFM.yml b/Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/README.MN87.gnm1.ann1.LWFM.yml deleted file mode 100644 index 1dad94c4..00000000 --- a/Chamaecrista/fasciculata/annotations/MN87.gnm1.ann1.LWFM/README.MN87.gnm1.ann1.LWFM.yml +++ /dev/null @@ -1,47 +0,0 @@ ---- -identifier: MN87.gnm1.ann1.LWFM - -provenance: "The files in this directory originated from http://gigadb.org/dataset/101045, modified with addition of GenBank accessions from https://www.ncbi.nlm.nih.gov/nuccore/QANZ00000000.1. The GigaDB source is the primary and authoritative instance. Files in the present directory are derived, and may have changes, as noted below. The files here are held as part of the LegumeInfo and LegumeFederation projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo and Legume Federation project(s). If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please 1) please cite the data appropriately - generally referring to the original publications for this data; and if you make use of any significant modifications in the files (noted below under Transformations where applicable), then please also cite the respective database project(s) related to this directory." - -source: "http://gigadb.org/dataset/101045" - -synopsis: Draft genome assembly for Chamaecrista fasciculata - -scientific_name: Chamaecrista fasciculata - -taxid: 53854 - -bioproject: PRJNA374770 - -scientific_name_abbrev: chafa - -genotype: - - MN87 (ICERNS isolate NF-2018-5) - -description: "Draft genome assembly for Chamaecrista fasciculata" - -dataset_doi: 10.5524/101044 - -genbank_accession: QANZ00000000 - -original_file_creation_date: "2018-07-23" - -local_file_creation_date: "2019-11-27" - -publication_doi: 10.1126/science.aat1743 - -dataset_release_date: "2019-11-27" - -publication_title: "Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis" - -contributors: "International Consortium on Evolution of Root Nodule Symbiosis" - -data_curators: Steven Cannon - -public_access_level: public - -license: open - -keywords: Chamaecrista fasciculata genome - -citation: "Griesmann M et al., Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis., Science, 2018 Jul 13;361(6398)." diff --git a/Chamaecrista/fasciculata/genomes/MN87.gnm1.JXFN/BUSCO/chafa.MN87.gnm1.JXFN.busco.fabales_odb10.short_summary.json b/Chamaecrista/fasciculata/genomes/MN87.gnm1.JXFN/BUSCO/chafa.MN87.gnm1.JXFN.busco.fabales_odb10.short_summary.json deleted file mode 100644 index 7f659ef6..00000000 --- a/Chamaecrista/fasciculata/genomes/MN87.gnm1.JXFN/BUSCO/chafa.MN87.gnm1.JXFN.busco.fabales_odb10.short_summary.json +++ /dev/null @@ -1,63 +0,0 @@ -{ - "parameters": { - "out_path": "/home/adf", - "cpu": "16", - "force": "False", - "restart": "False", - "quiet": "False", - "download_path": "/erdos/adf/busco_downloads", - "datasets_version": "odb10", - "offline": "False", - "download_base_url": "https://busco-data.ezlab.org/v5/data/", - "auto-lineage": "False", - "auto-lineage-prok": "False", - "auto-lineage-euk": "False", - "update-data": "False", - "use_augustus": "False", - "batch_mode": "False", - "tar": "False", - "in": "/home/adf/chafa.MN87.gnm1.JXFN.genome_main.fna", - "out": "BUSCO_genome_fabales_odb10", - "mode": "euk_genome_met", - "lineage_dataset": "/erdos/adf/busco_downloads/lineages/fabales_odb10", - "limit": "10", - "main_out": "/home/adf/BUSCO_genome_fabales_odb10", - "lineage_results_dir": "run_fabales_odb10", - "domain": "eukaryota", - "max_intron": "90000", - "max_seq_len": "120000", - "metaeuk_parameters": "", - "metaeuk_rerun_parameters": "", - "contig_break": "10", - "scaffold_composition": "False", - "gene_predictor": "metaeuk" - }, - "lineage_dataset": { - "name": "fabales_odb10", - "creation_date": "2020-08-05", - "number_of_buscos": "5366", - "number_of_species": "10" - }, - "versions": { - "hmmsearch": 3.1, - "bbtools": "38.96", - "metaeuk": "5.34c21f2", - "busco": "5.4.3" - }, - "results": { - "one_line_summary": "C:91.3%[S:79.0%,D:12.3%],F:0.8%,M:7.9%,n:5366", - "Complete": 91.3, - "Single copy": 79.0, - "Multi copy": 12.3, - "Fragmented": 0.8, - "Missing": 7.9, - "n_markers": 5366, - "domain": "eukaryota", - "Number of scaffolds": "56674", - "Number of contigs": "74256", - "Total length": "429102545", - "Percent gaps": "3.675%", - "Scaffold N50": "96643", - "Contigs N50": "27841" - } -} \ No newline at end of file diff --git a/Chamaecrista/fasciculata/genomes/MN87.gnm1.JXFN/CHECKSUM.MN87.gnm1.JXFN.md5 b/Chamaecrista/fasciculata/genomes/MN87.gnm1.JXFN/CHECKSUM.MN87.gnm1.JXFN.md5 deleted file mode 100644 index 18af9868..00000000 --- a/Chamaecrista/fasciculata/genomes/MN87.gnm1.JXFN/CHECKSUM.MN87.gnm1.JXFN.md5 +++ /dev/null @@ -1,12 +0,0 @@ -645d1c2a76019d024bc860e4a6a9c299 ./chafa.MN87.gnm1.JXFN.genome_main.fna.gz -3cac47fcd8eebfe8938444347ec35e86 ./MANIFEST.MN87.gnm1.JXFN.descriptions.yml -9f323a46d3b1f4c8f0f0be6033ebecb2 ./BUSCO/chafa.MN87.gnm1.JXFN.busco.fabales_odb10.short_summary.json -c569eb971a04d2288b85928654fca498 ./BUSCO/chafa.MN87.gnm1.JXFN.busco.fabales_odb10.short_summary.txt -c35ff06c755fe6ce7e32e7ad94e3df5c ./BUSCO/chafa.MN87.gnm1.JXFN.busco.fabales_odb10.full_table.tsv.gz -6c7dc7e11d3314dbeba135f99d98b475 ./chafa.MN87.gnm1.JXFN.genome_main.fna.gz.fai -1eb0221a4f738896a36921b1d63ec530 ./MANIFEST.MN87.gnm1.JXFN.correspondence.yml -32e5a762fc6128f369224e626a8c4383 ./CHANGES.MN87.gnm1.JXFN.txt -c3a0ad984b09e8694a71a22b7f208a54 ./chafa.MN87.gnm1.JXFN.genome_main.fna.gz.gzi -f1516f19783cc24fa78dbf4e11a59c16 ./README.MN87.gnm1.JXFN.yml -5398b3ec3b8fab83818ecb6ef3a1af15 ./busco/short_summary.specific.embryophyta_odb10.chafa.MN87.gnm1.JXFN.genome_main.fna.gz_busco.txt -5398b3ec3b8fab83818ecb6ef3a1af15 ./busco/chafa.MN87.gnm1.JXFN.genome_main.fna.gz_busco/short_summary.specific.embryophyta_odb10.chafa.MN87.gnm1.JXFN.genome_main.fna.gz_busco.txt diff --git a/Chamaecrista/fasciculata/genomes/MN87.gnm1.JXFN/README.MN87.gnm1.JXFN.yml b/Chamaecrista/fasciculata/genomes/MN87.gnm1.JXFN/README.MN87.gnm1.JXFN.yml deleted file mode 100644 index 9fbc4647..00000000 --- a/Chamaecrista/fasciculata/genomes/MN87.gnm1.JXFN/README.MN87.gnm1.JXFN.yml +++ /dev/null @@ -1,49 +0,0 @@ ---- -identifier: MN87.gnm1.JXFN - -provenance: "The files in this directory originated from http://gigadb.org/dataset/101045, modified with addition of GenBank accessions from https://www.ncbi.nlm.nih.gov/nuccore/QANZ00000000.1. The GigaDB source is the primary and authoritative instance. Files in the present directory are derived, and may have changes, as noted below. The files here are held as part of the LegumeInfo and LegumeFederation projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo and Legume Federation project(s). If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please 1) please cite the data appropriately - generally referring to the original publications for this data; and if you make use of any significant modifications in the files (noted below under Transformations where applicable), then please also cite the respective database project(s) related to this directory." - -source: "http://gigadb.org/dataset/101045" - -synopsis: Draft genome assembly for Chamaecrista fasciculata - -scientific_name: Chamaecrista fasciculata - -taxid: 53854 - -bioproject: PRJNA374770 - -scientific_name_abbrev: chafa - -genotype: - - MN87 - -supercontig_prefix: scaffold - -description: "Draft genome assembly for Chamaecrista fasciculata, genotype MN87 and ICERNS isolate NF-2018-5" - -dataset_doi: 10.5524/101044 - -genbank_accession: QANZ00000000 - -original_file_creation_date: "2018-07-23" - -local_file_creation_date: "2019-11-27" - -publication_doi: 10.1126/science.aat1743 - -dataset_release_date: "2019-11-27" - -publication_title: "Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis" - -contributors: "International Consortium on Evolution of Root Nodule Symbiosis" - -data_curators: Steven Cannon - -public_access_level: public - -license: open - -keywords: Chamaecrista fasciculata genome - -citation: "Griesmann M et al., Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis., Science, 2018 Jul 13;361(6398)." From 2e032bb05389a17479fcf03f159b3ac70b7eb01f Mon Sep 17 00:00:00 2001 From: Steven Cannon Date: Fri, 3 Nov 2023 15:54:08 -0500 Subject: [PATCH 44/57] Update CHECKSUM after adding Glycine.pan4.RK4P.table.tsv.gz and Glycine.pan4.RK4P.table_ref_lines.tsv.gz --- .../Glycine.pan4.RK4P/CHECKSUM.Glycine.pan4.RK4P.md5 | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/Glycine/GENUS/pangenes/Glycine.pan4.RK4P/CHECKSUM.Glycine.pan4.RK4P.md5 b/Glycine/GENUS/pangenes/Glycine.pan4.RK4P/CHECKSUM.Glycine.pan4.RK4P.md5 index 03db2b6f..d37bd82f 100644 --- a/Glycine/GENUS/pangenes/Glycine.pan4.RK4P/CHECKSUM.Glycine.pan4.RK4P.md5 +++ b/Glycine/GENUS/pangenes/Glycine.pan4.RK4P/CHECKSUM.Glycine.pan4.RK4P.md5 @@ -1,4 +1,4 @@ -d124ffaecd607ef654062f76967e6571 CHANGES.Glycine.pan4.RK4P.txt +030171d2d9e2ae0cc1ddac1f3891b215 CHANGES.Glycine.pan4.RK4P.txt 4fba1054f308b74625adc1ccef129832 Glycine.pan4.RK4P.clust.tsv.gz c5e4def1a6a8d58732a7f4b7a77c6810 Glycine.pan4.RK4P.complement.fna.gz 29ee255f39f60a526046550bdea12cd9 Glycine.pan4.RK4P.complement.fna.gz.fai @@ -17,8 +17,9 @@ eacad948d44351760ccd4cc1726e32ff Glycine.pan4.RK4P.pctl25_named_cds.fna.gz.gzi e8649b2418bbd831a347849a11c50878 Glycine.pan4.RK4P.pctl25_named_protein.faa.gz a330d563e0ea68dc30f52d47341a674d Glycine.pan4.RK4P.pctl25_named_protein.faa.gz.fai 4c95f6e08fb4ebd607818fb976ad79cd Glycine.pan4.RK4P.pctl25_named_protein.faa.gz.gzi -936693d2d9eac0dd724a3248832bc3f9 Glycine.pan4.RK4P.ref_lines_table.tsv.gz dd806c27bb072ebd44f4bd7e3acae3e8 Glycine.pan4.RK4P.stats.txt -359c066b7a040cd0ef69d18d3c10e331 MANIFEST.Glycine.pan4.RK4P.correspondence.yml -73d6a57dff06b4b838aea642dd85d5c7 MANIFEST.Glycine.pan4.RK4P.descriptions.yml +936693d2d9eac0dd724a3248832bc3f9 Glycine.pan4.RK4P.table_ref_lines.tsv.gz +4d25f1d2f971170987d2d2eaecb9a153 Glycine.pan4.RK4P.table.tsv.gz +1fdd33d2f563748bd7523ecc385cffbb MANIFEST.Glycine.pan4.RK4P.correspondence.yml +89541422620d746af92992391ebb0b94 MANIFEST.Glycine.pan4.RK4P.descriptions.yml 6faca2b442432fa401e5cf4f8328227b README.Glycine.pan4.RK4P.yml From ab67b49badd5267542ae8b3a24d3e63dcf97991c Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Tue, 7 Nov 2023 17:15:29 -0600 Subject: [PATCH 45/57] add missing metadata info for Bauhinia genus --- .../about_this_collection/description_Bauhinia.yml | 12 ++++++++++++ 1 file changed, 12 insertions(+) create mode 100644 Bauhinia/GENUS/about_this_collection/description_Bauhinia.yml diff --git a/Bauhinia/GENUS/about_this_collection/description_Bauhinia.yml b/Bauhinia/GENUS/about_this_collection/description_Bauhinia.yml new file mode 100644 index 00000000..93d63e27 --- /dev/null +++ b/Bauhinia/GENUS/about_this_collection/description_Bauhinia.yml @@ -0,0 +1,12 @@ +--- +taxid: 3805 +genus: Bauhinia +description: "The genus Bauhinia includes vines, shrubs, and trees that grow in tropical and subtropical regiona. Some species are grown for their fragrant orchid-like flowers." + +species: + - blakeana + - purpurea + - tomentosa + - variegata + +resources: From c1b523c2b8f53893e7f97c5f62af8c947c474072 Mon Sep 17 00:00:00 2001 From: adf-ncgr Date: Tue, 7 Nov 2023 16:18:29 -0700 Subject: [PATCH 46/57] delete trailing tab character making some yml god angry --- Bauhinia/GENUS/about_this_collection/description_Bauhinia.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Bauhinia/GENUS/about_this_collection/description_Bauhinia.yml b/Bauhinia/GENUS/about_this_collection/description_Bauhinia.yml index 93d63e27..b5de98e0 100644 --- a/Bauhinia/GENUS/about_this_collection/description_Bauhinia.yml +++ b/Bauhinia/GENUS/about_this_collection/description_Bauhinia.yml @@ -4,7 +4,7 @@ genus: Bauhinia description: "The genus Bauhinia includes vines, shrubs, and trees that grow in tropical and subtropical regiona. Some species are grown for their fragrant orchid-like flowers." species: - - blakeana + - blakeana - purpurea - tomentosa - variegata From 9ba98f99e57233b6ae007c804f9f59c2b85b812f Mon Sep 17 00:00:00 2001 From: Andrew Farmer Date: Tue, 7 Nov 2023 17:48:26 -0600 Subject: [PATCH 47/57] more missing metadata files for Bauhinia spp. making the autocontent generator angry --- .../description_Bauhinia_blakeana.yml | 13 +++++++++++++ .../description_Bauhinia_purpurea.yml | 13 +++++++++++++ .../description_Bauhinia_tomentosa.yml | 13 +++++++++++++ .../description_Bauhinia_variegata.yml | 13 +++++++++++++ 4 files changed, 52 insertions(+) create mode 100644 Bauhinia/blakeana/about_this_collection/description_Bauhinia_blakeana.yml create mode 100644 Bauhinia/purpurea/about_this_collection/description_Bauhinia_purpurea.yml create mode 100644 Bauhinia/tomentosa/about_this_collection/description_Bauhinia_tomentosa.yml create mode 100644 Bauhinia/variegata/about_this_collection/description_Bauhinia_variegata.yml diff --git a/Bauhinia/blakeana/about_this_collection/description_Bauhinia_blakeana.yml b/Bauhinia/blakeana/about_this_collection/description_Bauhinia_blakeana.yml new file mode 100644 index 00000000..7d93a87e --- /dev/null +++ b/Bauhinia/blakeana/about_this_collection/description_Bauhinia_blakeana.yml @@ -0,0 +1,13 @@ +--- +taxid: 180222 +genus: Bauhinia +species: blakeana +abbrev: baubl +commonName: Hong Kong orchidtree +description: "A sterile hybrid between Bauhinia variegata and Bauhinia purpurea, originating in Hong Kong in 1880. It is thought that all cultivated trees derive from grafts starting from one cultivated at the Hong Kong Botanical Gardens." +resources: + +strains: + - identifier: HK1 + accession: HK1 + name: HK1 diff --git a/Bauhinia/purpurea/about_this_collection/description_Bauhinia_purpurea.yml b/Bauhinia/purpurea/about_this_collection/description_Bauhinia_purpurea.yml new file mode 100644 index 00000000..66704d61 --- /dev/null +++ b/Bauhinia/purpurea/about_this_collection/description_Bauhinia_purpurea.yml @@ -0,0 +1,13 @@ +--- +taxid: 3806 +genus: Bauhinia +species: purpurea +abbrev: baupu +commonName: camel's foot tree +description: "Bauhinia purpurea is a small deciduous tree native to the Indian subcontinent and Myanmar. Some parts of the plant are edible and it has various medicinal uses." +resources: + +strains: + - identifier: HK2 + accession: HK2 + name: HK2 diff --git a/Bauhinia/tomentosa/about_this_collection/description_Bauhinia_tomentosa.yml b/Bauhinia/tomentosa/about_this_collection/description_Bauhinia_tomentosa.yml new file mode 100644 index 00000000..f75b8d3b --- /dev/null +++ b/Bauhinia/tomentosa/about_this_collection/description_Bauhinia_tomentosa.yml @@ -0,0 +1,13 @@ +--- +taxid: 204518 +genus: Bauhinia +species: tomentosa +abbrev: bauto +commonName: St. Thomas-tree, bell bauhinia, yellow bauhinia +description: "A small tree found in Tropical and Southern Africa as well as the Indian subcontinent." +resources: + +strains: + - identifier: HK3 + accession: HK3 + name: HK3 diff --git a/Bauhinia/variegata/about_this_collection/description_Bauhinia_variegata.yml b/Bauhinia/variegata/about_this_collection/description_Bauhinia_variegata.yml new file mode 100644 index 00000000..484a6d14 --- /dev/null +++ b/Bauhinia/variegata/about_this_collection/description_Bauhinia_variegata.yml @@ -0,0 +1,13 @@ +--- +taxid: 167791 +genus: Bauhinia +species: variegata +abbrev: bauva +commonName: mountain ebony, orchid tree +description: "A small deciduous tree native to an area from China through Southeast Asia to the Indian subcontinent. Edible buds are widely used as an ingredient in many subcontinent recipes." +resources: + +strains: + - identifier: HK4 + accession: HK4 + name: HK4 From ad11e23b83416fd2379d199e0f9bb411e72bb43b Mon Sep 17 00:00:00 2001 From: Steven Cannon Date: Fri, 10 Nov 2023 11:38:01 -0600 Subject: [PATCH 48/57] Replaced markers with significant GWAS association with full sets derived from the corresponding diversity datasets --- .../CHECKSUM.VC1973A.gnm6.mrk.Sandhu_Singh_2020.md5 | 7 ++++--- .../CHECKSUM.VC1973A.gnm7.mrk.Sandhu_Singh_2020.md5 | 8 +++++--- 2 files changed, 9 insertions(+), 6 deletions(-) diff --git a/Vigna/radiata/markers/VC1973A.gnm6.mrk.Sandhu_Singh_2020/CHECKSUM.VC1973A.gnm6.mrk.Sandhu_Singh_2020.md5 b/Vigna/radiata/markers/VC1973A.gnm6.mrk.Sandhu_Singh_2020/CHECKSUM.VC1973A.gnm6.mrk.Sandhu_Singh_2020.md5 index 472c956f..aaadd3db 100644 --- a/Vigna/radiata/markers/VC1973A.gnm6.mrk.Sandhu_Singh_2020/CHECKSUM.VC1973A.gnm6.mrk.Sandhu_Singh_2020.md5 +++ b/Vigna/radiata/markers/VC1973A.gnm6.mrk.Sandhu_Singh_2020/CHECKSUM.VC1973A.gnm6.mrk.Sandhu_Singh_2020.md5 @@ -1,3 +1,4 @@ -2179de18a4b4376e58eac2a9cf13fccf ./README.VC1973A.gnm6.mrk.Sandhu_Singh_2020.yml -ea962474152c4b96056f66ed61ca9cae ./vigra.VC1973A.gnm6.mrk.Sandhu_Singh_2020.gff3.gz.tbi -afd8a8434f8bfe747c5258fee6355b46 ./vigra.VC1973A.gnm6.mrk.Sandhu_Singh_2020.gff3.gz +2f8815c715305be2e429930d07b4d0cf CHANGES.VC1973A.gnm6.mrk.Sandhu_Singh_2020.txt +2179de18a4b4376e58eac2a9cf13fccf README.VC1973A.gnm6.mrk.Sandhu_Singh_2020.yml +939ffd7ee964a10e5a3eada3e994a882 vigra.VC1973A.gnm6.mrk.Sandhu_Singh_2020.gff3.gz +90efd8a4eebc5a5cd2ccfd9b43c33345 vigra.VC1973A.gnm6.mrk.Sandhu_Singh_2020.gff3.gz.tbi diff --git a/Vigna/radiata/markers/VC1973A.gnm7.mrk.Sandhu_Singh_2020/CHECKSUM.VC1973A.gnm7.mrk.Sandhu_Singh_2020.md5 b/Vigna/radiata/markers/VC1973A.gnm7.mrk.Sandhu_Singh_2020/CHECKSUM.VC1973A.gnm7.mrk.Sandhu_Singh_2020.md5 index a81b9e16..7ae5d844 100644 --- a/Vigna/radiata/markers/VC1973A.gnm7.mrk.Sandhu_Singh_2020/CHECKSUM.VC1973A.gnm7.mrk.Sandhu_Singh_2020.md5 +++ b/Vigna/radiata/markers/VC1973A.gnm7.mrk.Sandhu_Singh_2020/CHECKSUM.VC1973A.gnm7.mrk.Sandhu_Singh_2020.md5 @@ -1,3 +1,5 @@ -d5aa6ca52af955a3c543cc154194713b ./README.VC1973A.gnm7.mrk.Sandhu_Singh_2020.yml -66396aee69486837c44c71720d8dceff ./vigra.VC1973A.gnm7.mrk.Sandhu_Singh_2020.gff3.gz -76f430feee0ac4c4b626712575ba4880 ./vigra.VC1973A.gnm7.mrk.Sandhu_Singh_2020.gff3.gz.tbi +2f8815c715305be2e429930d07b4d0cf CHANGES.VC1973A.gnm7.mrk.Sandhu_Singh_2020.txt +d41d8cd98f00b204e9800998ecf8427e CHECKSUM.VC1973A.gnm7.mrk.Sandhu_Singh_2020.md5 +d5aa6ca52af955a3c543cc154194713b README.VC1973A.gnm7.mrk.Sandhu_Singh_2020.yml +33e175b87fb12cc30e5698ddb5b66352 vigra.VC1973A.gnm7.mrk.Sandhu_Singh_2020.gff3.gz +25b7bb0259a28b5c11ca31982a44ba0b vigra.VC1973A.gnm7.mrk.Sandhu_Singh_2020.gff3.gz.tbi From 02bbbf0d69e27482596d63adee4ff876c8318eb6 Mon Sep 17 00:00:00 2001 From: Jacqueline Campbell Date: Thu, 30 Nov 2023 15:17:02 -0600 Subject: [PATCH 49/57] add info to Glysy description --- .../description_Glycine_syndetika.yml | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) diff --git a/Glycine/syndetika/about_this_collection/description_Glycine_syndetika.yml b/Glycine/syndetika/about_this_collection/description_Glycine_syndetika.yml index 18625f66..f8ce415a 100644 --- a/Glycine/syndetika/about_this_collection/description_Glycine_syndetika.yml +++ b/Glycine/syndetika/about_this_collection/description_Glycine_syndetika.yml @@ -5,12 +5,15 @@ species: syndetika abbrev: glysy description: "Glycine syndetika (B.E. Pfeil & Craven) is a twining perennial plant with three leathery, often persistent leaflets. Flowers are somewhat clustered towards to the top of the inflorescences and pods contain 4-9 relatively large square seeds (Pfeil. BE et al., 2006). G. syndetika is diploid (2n = 40) member of the A-genome clade. (This species was formerly part of the Glycine tomentella species complex and was referred to as G. tomentella D4. ) It is has a restricted range in the Eastern Queensland region of Australia (Ratnaparkhe et al 2011; Gonzalez-Orozco et al., 2012)." resources: - - name: SoyMap2 Diversity Browser on Gmax1.01 + - name: SoyMap2 Diversity Browser on Glyma.Wm82.a1 (Gmax1.01) URL: "https://soybase.org/gb2/gbrowse/gmax1.01/?label=diversity_syndetika_BES_alignments" - description: "GBrowse for G. syndetika Bac End Sequence alignments on Gmax1.01" - - name: SoyMap2 Diversity Browser on Gmax2.0 + description: "GBrowse for G. syndetika Bac End Sequence alignments on Glyma.Wm82.a1 (Gmax1.01)" + - name: SoyMap2 Diversity Browser on Glyma.Wm82.a2 (Gmax2.0) URL: "https://soybase.org/gb2/gbrowse/gmax2.0/?label=diversity_syndetika_bes_alignments_relaxed_filtering" - description: "GBrowse for G. syndetika Bac End Sequence alignments on Gmax2.0" + description: "GBrowse for G. syndetika Bac End Sequence alignments on Glyma.Wm82.a2 (Gmax2.0)" + - name: SoyMap II project + URL: "/projects/zhuang_wang_2022" + description: "SoyMap II project to sequence perennial relatives of soybean." strains: - identifier: G1300 accession: G1300 From bbfc7c557b1956115502692248b6b4dd00e2c92a Mon Sep 17 00:00:00 2001 From: Jacqueline Campbell Date: Fri, 1 Dec 2023 13:14:36 -0600 Subject: [PATCH 50/57] add info to SoyMapII collection description --- .../description_Glycine_D3-tomentella.yml | 11 +++++++---- .../description_Glycine_cyrtoloba.yml | 11 +++++++---- .../description_Glycine_dolichocarpa.yml | 11 +++++++---- .../description_Glycine_falcata.yml | 11 +++++++---- .../description_Glycine_stenophita.yml | 11 +++++++---- 5 files changed, 35 insertions(+), 20 deletions(-) diff --git a/Glycine/D3-tomentella/about_this_collection/description_Glycine_D3-tomentella.yml b/Glycine/D3-tomentella/about_this_collection/description_Glycine_D3-tomentella.yml index 452309a2..e3e77d85 100644 --- a/Glycine/D3-tomentella/about_this_collection/description_Glycine_D3-tomentella.yml +++ b/Glycine/D3-tomentella/about_this_collection/description_Glycine_D3-tomentella.yml @@ -5,12 +5,15 @@ species: D3-tomentella abbrev: glyd3 description: "A complex of diploid and tetraploid taxa are lumped under the name \"G. tomentella\" but are each reproductively isolated species, e.g. G. tomentella D3 belongs to the D-genome, whereas D1 G. tomentella belongs to the E-genome." resources: - - name: SoyMap2 Diversity Browser on Gmax1.01 + - name: SoyMap2 Diversity Browser on Glyma.Wm82.a1 (Gmax1.01) URL: "https://soybase.org/gb2/gbrowse/gmax1.01/?label=diversity_tomentella_BES_alignments_relaxed_filtering" - description: "GBrowse for G. tomentella Bac End Sequence alignments on Gmax1.01" - - name: SoyMap2 Diversity Browser on Gmax2.0 + description: "GBrowse for G. tomentella Bac End Sequence alignments on Glyma.Wm82.a1 (Gmax1.01)" + - name: SoyMap2 Diversity Browser on Glyma.Wm82.a2 (Gmax2.0) URL: "https://soybase.org/gb2/gbrowse/gmax2.0/?label=diversity_tomentella_bes_alignments_relaxed_filtering" - description: "GBrowse for G. tomentella Bac End Sequence alignments on Gmax2.0" + description: "GBrowse for G. tomentella Bac End Sequence alignments on Glyma.Wm82.a2 (Gmax2.0)" + - name: SoyMap II + URL: "/projects/zhuang_wang_2022" + description: "SoyMap II project to sequence perennial relatives of soybean." strains: - identifier: G1403 accession: G1403 diff --git a/Glycine/cyrtoloba/about_this_collection/description_Glycine_cyrtoloba.yml b/Glycine/cyrtoloba/about_this_collection/description_Glycine_cyrtoloba.yml index 715c3a2c..bac49501 100644 --- a/Glycine/cyrtoloba/about_this_collection/description_Glycine_cyrtoloba.yml +++ b/Glycine/cyrtoloba/about_this_collection/description_Glycine_cyrtoloba.yml @@ -5,12 +5,15 @@ species: cyrtoloba abbrev: glycy description: "G. cyrotoloba (Tind) is a perennial plant with twining and stiff stems. G. cyrotoloba pods are curved and somewhat mottled in appearance containing 3-9 seeds that and are dark brown to black in color (Tindale, MD et al., 1984). G. cyrotoloba is a diploid (2n=40) member of the C-genome of Glycine. It is found along the coast of Queensland and Northern New South Wales (Ratnaparkhe et al 2011 ; Gonzalez-Orozco et al., 2012)." resources: - - name: SoyMap2 Diversity Browser on Gmax1.01 + - name: SoyMap II project + URL: "/projects/zhuang_wang_2022" + description: "SoyMap II project to sequence perennial relatives of soybean." + - name: SoyMap2 Diversity Browser on Glyma.Wm82.a1 (Gmax1.01) URL: "https://soybase.org/gb2/gbrowse/gmax1.01/?label=diversity_cyrtoloba_BES_alignments_relaxed_filtering" - description: "GBrowse for G. cyrtoloba Bac End Sequence alignments on Gmax1.01" - - name: SoyMap2 Diversity Browser on Gmax2.0 + description: "GBrowse for G. cyrtoloba Bac End Sequence alignments on Glyma.Wm82.a1 (Gmax1.01)" + - name: SoyMap2 Diversity Browser on Glyma.Wm82.a2 (Gmax2.0) URL: "https://soybase.org/gb2/gbrowse/gmax2.0/?label=diversity_cyrtoloba_bes_alignments_relaxed_filtering" - description: "GBrowse for G. cyrtoloba Bac End Sequence alignments on Gmax2.0" + description: "GBrowse for G. cyrtoloba Bac End Sequence alignments on Glyma.Wm82.a2 (Gmax2.0)" strains: - identifier: G1267 accession: G1267 diff --git a/Glycine/dolichocarpa/about_this_collection/description_Glycine_dolichocarpa.yml b/Glycine/dolichocarpa/about_this_collection/description_Glycine_dolichocarpa.yml index 948bae84..6ea568a8 100644 --- a/Glycine/dolichocarpa/about_this_collection/description_Glycine_dolichocarpa.yml +++ b/Glycine/dolichocarpa/about_this_collection/description_Glycine_dolichocarpa.yml @@ -5,12 +5,15 @@ species: dolichocarpa abbrev: glydo description: "Glycine dolichocarpa (Tateishi & Ohashi) is a twining plant with long straight dark brown pods with 5-7 seeds. Seeds are square and dark brown in color. G. dolichocarpa is an allotetraploid (2n = 4x = 80) formed by hybridizatoin between G. syndetika and G. tomentella D3 (both 2n = 40). (This species was formerly part of the Glycine tomentella species complex and was referred to as G. tomentella T2.) It has a limited Australian range in Queensland, but like several other Glycine allopolyploids, has colonized islands of the Pacific Ocean (in this case Taiwan) where no perennial diploid Glycine species have been found ( Ratnaparkhe et al 2011; Harbert et al 2014)." resources: - - name: SoyMap2 Diversity Browser on Gmax1.01 + - name: SoyMap2 Diversity Browser on Glyma.Wm82.a1 (Gmax1.01) URL: "https://soybase.org/gb2/gbrowse/gmax1.01/?label=diversity_dolichocarpa_alignments_relaxed_filtering" - description: "GBrowse for G. dolichocarpa Bac End Sequence alignments on Gmax1.01" - - name: SoyMap2 Diversity Browser on Gmax2.0 + description: "GBrowse for G. dolichocarpa Bac End Sequence alignments on Glyma.Wm82.a1 (Gmax1.01)" + - name: SoyMap2 Diversity Browser on Glyma.Wm82.a2 (Gmax2.0) URL: "https://soybase.org/gb2/gbrowse/gmax2.0/?label=diversity_dolichocarpa_alignments_relaxed_filtering" - description: "GBrowse for G. dolichocarpa Bac End Sequence alignments on Gmax2.0" + description: "GBrowse for G. dolichocarpa Bac End Sequence alignments on Glyma.Wm82.a2 (Gmax2.0)" + - name: SoyMap II project + URL: "/projects/zhuang_wang_2022" + description: "SoyMap II project to sequence perennial relatives of soybean." strains: - identifier: G1134 accession: G1134 diff --git a/Glycine/falcata/about_this_collection/description_Glycine_falcata.yml b/Glycine/falcata/about_this_collection/description_Glycine_falcata.yml index 4d64b622..e9b0b9b2 100644 --- a/Glycine/falcata/about_this_collection/description_Glycine_falcata.yml +++ b/Glycine/falcata/about_this_collection/description_Glycine_falcata.yml @@ -5,12 +5,15 @@ species: falcata abbrev: glyfa description: "Glycine falcata (Benth.) is unique among perennial Glycine species in that it does not form a vine but rather short, erect stems from a fibrous woody root system instead of the more common taproot. Seeds are round and smooth similar to the annual species. G. falcata is a diploid (2n = 40) and is the sole member of the F-genome. It is sister to the remainder of subgenus Glycine, and is distinctive ecologically, characteristically growing in the black soil region of Queensland and possessing both chasmogamous and below- ground cleistogamous flowers, the latter producing geocarpic fruits (Ratnaparkhe et al 2011; Gonzalez-Orozco et al., 2012)." resources: - - name: SoyMap2 Diversity Browser on Gmax1.01 + - name: SoyMap2 Diversity Browser on Glyma.Wm82.a1 (Gmax1.01) URL: "https://soybase.org/gb2/gbrowse/gmax1.01/?label=diversity_falcata_BES_alignments" - description: "GBrowse for G. falcata Bac End Sequence alignments on Gmax1.01" - - name: SoyMap2 Diversity Browser on Gmax2.0 + description: "GBrowse for G. falcata Bac End Sequence alignments on Glyma.Wm82.a1 (Gmax1.01)" + - name: SoyMap2 Diversity Browser on Glyma.Wm82.a2 (Gmax2.0) URL: "https://soybase.org/gb2/gbrowse/gmax2.0/?label=diversity_falcata_bes_alignments_relaxed_filtering" - description: "GBrowse for G. falcata Bac End Sequence alignments on Gmax2.0" + description: "GBrowse for G. falcata Bac End Sequence alignments on Glyma.Wm82.a2 (Gmax2.0)" + - name: SoyMap II project + URL: "/projects/zhuang_wang_2022" + description: "SoyMap II project to sequence perennial relatives of soybean." strains: - identifier: G1718 accession: G1718 diff --git a/Glycine/stenophita/about_this_collection/description_Glycine_stenophita.yml b/Glycine/stenophita/about_this_collection/description_Glycine_stenophita.yml index 1403374c..ab257e43 100644 --- a/Glycine/stenophita/about_this_collection/description_Glycine_stenophita.yml +++ b/Glycine/stenophita/about_this_collection/description_Glycine_stenophita.yml @@ -5,12 +5,15 @@ species: stenophita abbrev: glyst description: "Glycine stenophita (B.E. Pfeil & Tind.) is a scrambling or climbing perennial that is glabrous or with sparse white hairs covering the stems. Pods are 4 to 6 seeded and seeds are generally barrel shaped with some variation in shape from elliptical to square. G. stenophita is a diploid (2n = 40) member of the B-genome group. It occurs in the Australian states of Queensland and New South Wales (Ratnaparkhe et al 2011; Gonzalez-Orozco et al., 2012)." resources: - - name: SoyMap2 Diversity Browser on Gmax1.01 + - name: SoyMap2 Diversity Browser on Glyma.Wm82.a1 (Gmax1.01) URL: "https://soybase.org/gb2/gbrowse/gmax1.01/?label=diversity_stenophita_BES_alignments" - description: "GBrowse for G. stenophita Bac End Sequence alignments on Gmax1.01" - - name: SoyMap2 Diversity Browser on Gmax2.0 + description: "GBrowse for G. stenophita Bac End Sequence alignments on Glyma.Wm82.a1 (Gmax1.01)" + - name: SoyMap2 Diversity Browser on Glyma.Wm82.a2 (Gmax2.0) URL: "https://soybase.org/gb2/gbrowse/gmax2.0/?label=diversity_stenophita_bes_alignments_relaxed_filtering" - description: "GBrowse for G. stenophita Bac End Sequence alignments on Gmax2.0" + description: "GBrowse for G. stenophita Bac End Sequence alignments on Glyma.Wm82.a2 (Gmax2.0)" + - name: SoyMap II project + URL: "/projects/zhuang_wang_2022" + description: "SoyMap II project to sequence perennial relatives of soybean." strains: - identifier: G1974 accession: G1974 From cc2ed56238f3be4defce78d13f8365e9703873a6 Mon Sep 17 00:00:00 2001 From: Wei Huang Date: Tue, 5 Dec 2023 13:38:43 -0600 Subject: [PATCH 51/57] add SNP50K minor allele frequencies (MAF) file --- ...CHECKSUM.Wm82.gnm1.div.Song_Hyten_2015.md5 | 19 ++++++++++--------- 1 file changed, 10 insertions(+), 9 deletions(-) diff --git a/Glycine/max/diversity/Wm82.gnm1.div.Song_Hyten_2015/CHECKSUM.Wm82.gnm1.div.Song_Hyten_2015.md5 b/Glycine/max/diversity/Wm82.gnm1.div.Song_Hyten_2015/CHECKSUM.Wm82.gnm1.div.Song_Hyten_2015.md5 index 8854ba31..955fd441 100644 --- a/Glycine/max/diversity/Wm82.gnm1.div.Song_Hyten_2015/CHECKSUM.Wm82.gnm1.div.Song_Hyten_2015.md5 +++ b/Glycine/max/diversity/Wm82.gnm1.div.Song_Hyten_2015/CHECKSUM.Wm82.gnm1.div.Song_Hyten_2015.md5 @@ -1,9 +1,10 @@ -9a0851c9a3223269753933f658e7655a ./MANIFEST.Wm82.gnm1.div.Song_Hyten_2015.descriptions.yml -5c52cf892bdcf64db053077452616263 ./MANIFEST.Wm82.gnm1.div.Song_Hyten_2015.correspondence.yml -f671797d3a184a8af4030be1bdd202b4 ./glyma.Wm82.gnm1.div.Song_Hyten_2015.vcf.gz -923abe2406fbf1a509d86d6a0113b0b9 ./glyma.Wm82.gnm1.div.Song_Hyten_2015.hmp.txt.gz -8c7b110c491a70855855db9801cfda7b ./glyma.Wm82.gnm1.div.Song_Hyten_2015.Flapjack.txt.gz -bde9e13cb84819ed9426b340f3ed407e ./glyma.Wm82.gnm1.div.Song_Hyten_2015.markerMap.txt.gz -d4b284d7e5eff81e825f8b36ed2f3968 ./CHANGES.Wm82.gnm1.div.Song_Hyten_2015.txt -60e881f92d27cfdee6753bd0af333d9e ./glyma.Wm82.gnm1.div.Song_Hyten_2015.vcf.gz.tbi -04b09177a4f96140e4954bf71c76cb25 ./README.Wm82.gnm1.div.Song_Hyten_2015.yml +80c03507a41d3857ba94b1000eb30bcd CHANGES.Wm82.gnm1.div.Song_Hyten_2015.txt +5c52cf892bdcf64db053077452616263 MANIFEST.Wm82.gnm1.div.Song_Hyten_2015.correspondence.yml +9a0851c9a3223269753933f658e7655a MANIFEST.Wm82.gnm1.div.Song_Hyten_2015.descriptions.yml +04b09177a4f96140e4954bf71c76cb25 README.Wm82.gnm1.div.Song_Hyten_2015.yml +2b6fc1e1cf9263de41ee17bdb281545d glyma.Wm82.gnm1.div.Song_Hyten_2015.Flapjack.txt.gz +bf7b2e5adcab57fe162af94fa3969acc glyma.Wm82.gnm1.div.Song_Hyten_2015.hmp.txt.gz +3fb861cd4d6dd627b513053b3f5491dc glyma.Wm82.gnm1.div.Song_Hyten_2015.maf.txt.gz +d2366acbf76dd34a36dd6cb6f681312c glyma.Wm82.gnm1.div.Song_Hyten_2015.markerMap.txt.gz +f671797d3a184a8af4030be1bdd202b4 glyma.Wm82.gnm1.div.Song_Hyten_2015.vcf.gz +60e881f92d27cfdee6753bd0af333d9e glyma.Wm82.gnm1.div.Song_Hyten_2015.vcf.gz.tbi From 3130ac35b73defe3ed71e73a813c0a16ea7278c2 Mon Sep 17 00:00:00 2001 From: Wei Huang Date: Mon, 18 Dec 2023 12:01:31 -0600 Subject: [PATCH 52/57] added Wm82.gnm4.div.Song_Hyten_2015 directory --- .../CHANGES.Wm82.gnm4.div.Song_Hyten_2015.txt | 6 +++ ...CHECKSUM.Wm82.gnm4.div.Song_Hyten_2015.md5 | 7 +++ ...nm4.div.Song_Hyten_2015.correspondence.yml | 5 +++ ....gnm4.div.Song_Hyten_2015.descriptions.yml | 5 +++ .../README.Wm82.gnm4.div.Song_Hyten_2015.yml | 45 +++++++++++++++++++ 5 files changed, 68 insertions(+) create mode 100644 Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/CHANGES.Wm82.gnm4.div.Song_Hyten_2015.txt create mode 100644 Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/CHECKSUM.Wm82.gnm4.div.Song_Hyten_2015.md5 create mode 100644 Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/MANIFEST.Wm82.gnm4.div.Song_Hyten_2015.correspondence.yml create mode 100644 Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/MANIFEST.Wm82.gnm4.div.Song_Hyten_2015.descriptions.yml create mode 100644 Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/README.Wm82.gnm4.div.Song_Hyten_2015.yml diff --git a/Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/CHANGES.Wm82.gnm4.div.Song_Hyten_2015.txt b/Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/CHANGES.Wm82.gnm4.div.Song_Hyten_2015.txt new file mode 100644 index 00000000..e8146465 --- /dev/null +++ b/Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/CHANGES.Wm82.gnm4.div.Song_Hyten_2015.txt @@ -0,0 +1,6 @@ +--- +file_transformation: + - glyma.Wm82.gnm4.div.Song_Hyten_2015.hmp.gz Transformation from VCF format to HapMap format using Tassel-5-standalone. + +changes: + - 2023-12-18 Initial preparation for Legume Federation datastore. diff --git a/Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/CHECKSUM.Wm82.gnm4.div.Song_Hyten_2015.md5 b/Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/CHECKSUM.Wm82.gnm4.div.Song_Hyten_2015.md5 new file mode 100644 index 00000000..92c261b3 --- /dev/null +++ b/Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/CHECKSUM.Wm82.gnm4.div.Song_Hyten_2015.md5 @@ -0,0 +1,7 @@ +2f0d04e0a8c445b48d2c6a8d72146a52 CHANGES.Wm82.gnm4.div.Song_Hyten_2015.txt +6a1cc92f26619bb0971a72a126165c3c MANIFEST.Wm82.gnm4.div.Song_Hyten_2015.correspondence.yml +aff33b0a8438d4cff4f863dd6fa1aec7 MANIFEST.Wm82.gnm4.div.Song_Hyten_2015.descriptions.yml +ac69921dfb63134d014ef91b72bb2c5b README.Wm82.gnm4.div.Song_Hyten_2015.yml +62f00ea9b7075e4bfcda470e7ed44133 glyma.Wm82.gnm4.div.Song_Hyten_2015.hmp.gz +41fefb2c5c3d844ad8f590c1ffb41512 glyma.Wm82.gnm4.div.Song_Hyten_2015.vcf.gz +eea8721591f4a0954e64ff860eeda89b glyma.Wm82.gnm4.div.Song_Hyten_2015.vcf.gz.tbi diff --git a/Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/MANIFEST.Wm82.gnm4.div.Song_Hyten_2015.correspondence.yml b/Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/MANIFEST.Wm82.gnm4.div.Song_Hyten_2015.correspondence.yml new file mode 100644 index 00000000..202f5132 --- /dev/null +++ b/Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/MANIFEST.Wm82.gnm4.div.Song_Hyten_2015.correspondence.yml @@ -0,0 +1,5 @@ +--- +# filename in this repository: previous names +glyma.Wm82.gnm4.div.Song_Hyten_2015.vcf.gz: soysnp50K_wm82.a4_41317.vcf.gz +glyma.Wm82.gnm4.div.Song_Hyten_2015.vcf.gz.tbi: soysnp50K_wm82.a4_41317.vcf.gz.tbi +glyma.Wm82.gnm4.div.Song_Hyten_2015.hmp.txt.gz: soysnp50K_wm82.a4_31417.hmp.gz diff --git a/Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/MANIFEST.Wm82.gnm4.div.Song_Hyten_2015.descriptions.yml b/Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/MANIFEST.Wm82.gnm4.div.Song_Hyten_2015.descriptions.yml new file mode 100644 index 00000000..a946f0b8 --- /dev/null +++ b/Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/MANIFEST.Wm82.gnm4.div.Song_Hyten_2015.descriptions.yml @@ -0,0 +1,5 @@ +--- +# filename in this repository: description +glyma.Wm82.gnm.div.Song_Hyten_2015.vcf.gz: SoySNP50K Glyma.Wm82.gnm4 VCF file using SoySNP50K Glyma.Wm82.gnm2 VCF file and GFF3 file with SoySNP50k positions on Glyma.Wm82.gnm4 +glyma.Wm82.gnm.div.Song_Hyten_2015.vcf.gz.tbi: Indexed VCF file using tabix +glyma.Wm82.gnm.div.Song_Hyten_2015.hmp.gz: HapMap file of the whole U.S. germplasm collection genotyped with SoySNP50K against Williams82 Reference genome a4 (Wm82.a4.v1) diff --git a/Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/README.Wm82.gnm4.div.Song_Hyten_2015.yml b/Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/README.Wm82.gnm4.div.Song_Hyten_2015.yml new file mode 100644 index 00000000..bf60683d --- /dev/null +++ b/Glycine/max/diversity/Wm82.gnm4.div.Song_Hyten_2015/README.Wm82.gnm4.div.Song_Hyten_2015.yml @@ -0,0 +1,45 @@ +--- +identifier: Wm82.gnm4.div.Song_Hyten_2015 + +provenance: "The files in this directory originated from NCBI dbSNP (https://www.ncbi.nlm.nih.gov/projects/SNP/). The NCBI dbSNP repository is considered the primary repository and authoritative; files in this present directory are derived, and may have changes, as noted below. The files here are held as part of the LegumeInfo, SoyBase, and LegumeFederation projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo, SoyBase, and Legume Federation project(s). If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please 1) please cite the data appropriately - generally referring to the original publications for this data; and if you make use of any significant modifications in the files (noted below under Transformations where applicable), then please also cite the respective database project(s) related to this directory." + +source: "ftp://ftp.ncbi.nih.gov/snp/organisms/soybean_3847/viewBatch/snpBatch_BARC_1059007.gz" + +synopsis: "VCF and HapMap files containing genotype information of the whole U.S. soybean germplasm collection using the SoySNP50K BeadChip." + +scientific_name: Glycine max + +taxid: 3847 + +scientific_name_abbrev: glyma + +genotype: + - U.S. Soybean Germplasm Collection (Glycine max and Glycine soja) + +description: "Multiple files containing genotype information of the U.S. soybean germplasm collection genotyped with the SoySNP50K BeadChip. Data included in this set are VCF files, HapMap files" + +genotyping_platform: SoySNP50K + +genbank_accession: "ss715578401, ss715639200, rs121965363, rs864620262" + +original_file_creation_date: "2015-07-28" + +local_file_creation_date: "2016-10-01" + +publication_doi: 10.1534/g3.115.019000 + +dataset_release_date: "2015-07-28" + +publication_title: Fingerprinting Soybean Germplasm and Its Utility in Genomic Research + +contributors: Qijian Song, David L. Hyten, Gaofeng Jia, Charles V. Quigley, Edward W. Fickus, Randall L. Nelson, and Perry B. Cregan + +data_curators: Wei Huang + +public_access_level: public + +license: Open + +keywords: soybean, germplasm, genotyping, SoySNP50K, genetic diversity, haplotype block, map + +citation: "Song, Q., Hyten, D. L., Jia, G., Quigley, C. V., Fickus, E. W., Nelson, R. L., & Cregan, P. B. (2015). Fingerprinting soybean germplasm and its utility in genomic research. G3: Genes, Genomes, Genetics, 5(10), 1999-2006." From aaf0a2efaca97754c12d28110a156efff5506b1f Mon Sep 17 00:00:00 2001 From: Steven Cannon Date: Mon, 18 Dec 2023 14:55:06 -0600 Subject: [PATCH 53/57] Add description of SoyMap II project to description_Glycine.yml --- Glycine/GENUS/about_this_collection/description_Glycine.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/Glycine/GENUS/about_this_collection/description_Glycine.yml b/Glycine/GENUS/about_this_collection/description_Glycine.yml index 647c3176..8f0cccb3 100644 --- a/Glycine/GENUS/about_this_collection/description_Glycine.yml +++ b/Glycine/GENUS/about_this_collection/description_Glycine.yml @@ -29,3 +29,6 @@ resources: - name: Grin Data Explorer URL: "https://soybase.org/grindata/" description: "Tool to facilitate searches of GRIN Descriptor Data" + - name: SoyMapII project + URL: "/projects/zhuang_wang_2022" + description: "SoyMap II project to sequence perennial relatives of soybean." From 24973082a9a2aabb83868be2d7b1f2dc6863aac3 Mon Sep 17 00:00:00 2001 From: Steven Cannon Date: Mon, 18 Dec 2023 15:17:59 -0600 Subject: [PATCH 54/57] Fix noncompliant about_this_collection files for Bauhinia --- Bauhinia/GENUS/about_this_collection/description_Bauhinia.yml | 1 - .../about_this_collection/description_Bauhinia_blakeana.yml | 3 ++- .../about_this_collection/description_Bauhinia_purpurea.yml | 3 ++- .../about_this_collection/description_Bauhinia_tomentosa.yml | 3 ++- .../about_this_collection/description_Bauhinia_variegata.yml | 3 ++- 5 files changed, 8 insertions(+), 5 deletions(-) diff --git a/Bauhinia/GENUS/about_this_collection/description_Bauhinia.yml b/Bauhinia/GENUS/about_this_collection/description_Bauhinia.yml index b5de98e0..f6d85068 100644 --- a/Bauhinia/GENUS/about_this_collection/description_Bauhinia.yml +++ b/Bauhinia/GENUS/about_this_collection/description_Bauhinia.yml @@ -9,4 +9,3 @@ species: - tomentosa - variegata -resources: diff --git a/Bauhinia/blakeana/about_this_collection/description_Bauhinia_blakeana.yml b/Bauhinia/blakeana/about_this_collection/description_Bauhinia_blakeana.yml index 7d93a87e..7a443c36 100644 --- a/Bauhinia/blakeana/about_this_collection/description_Bauhinia_blakeana.yml +++ b/Bauhinia/blakeana/about_this_collection/description_Bauhinia_blakeana.yml @@ -5,9 +5,10 @@ species: blakeana abbrev: baubl commonName: Hong Kong orchidtree description: "A sterile hybrid between Bauhinia variegata and Bauhinia purpurea, originating in Hong Kong in 1880. It is thought that all cultivated trees derive from grafts starting from one cultivated at the Hong Kong Botanical Gardens." -resources: strains: - identifier: HK1 accession: HK1 name: HK1 + origin: Hong Kong + description: "A sterile hybrid between Bauhinia variegata and Bauhinia purpurea, originating in Hong Kong in 1880. It is thought that all cultivated trees derive from grafts starting from one cultivated at the Hong Kong Botanical Gardens." diff --git a/Bauhinia/purpurea/about_this_collection/description_Bauhinia_purpurea.yml b/Bauhinia/purpurea/about_this_collection/description_Bauhinia_purpurea.yml index 66704d61..ced8f1b2 100644 --- a/Bauhinia/purpurea/about_this_collection/description_Bauhinia_purpurea.yml +++ b/Bauhinia/purpurea/about_this_collection/description_Bauhinia_purpurea.yml @@ -5,9 +5,10 @@ species: purpurea abbrev: baupu commonName: camel's foot tree description: "Bauhinia purpurea is a small deciduous tree native to the Indian subcontinent and Myanmar. Some parts of the plant are edible and it has various medicinal uses." -resources: strains: - identifier: HK2 accession: HK2 name: HK2 + origin: Myanmar + description: "Bauhinia purpurea is a small deciduous tree native to the Indian subcontinent and Myanmar. Some parts of the plant are edible and it has various medicinal uses." diff --git a/Bauhinia/tomentosa/about_this_collection/description_Bauhinia_tomentosa.yml b/Bauhinia/tomentosa/about_this_collection/description_Bauhinia_tomentosa.yml index f75b8d3b..b2fddb1f 100644 --- a/Bauhinia/tomentosa/about_this_collection/description_Bauhinia_tomentosa.yml +++ b/Bauhinia/tomentosa/about_this_collection/description_Bauhinia_tomentosa.yml @@ -5,9 +5,10 @@ species: tomentosa abbrev: bauto commonName: St. Thomas-tree, bell bauhinia, yellow bauhinia description: "A small tree found in Tropical and Southern Africa as well as the Indian subcontinent." -resources: strains: - identifier: HK3 accession: HK3 name: HK3 + origin: Southern Africa + description: "A small tree found in Tropical and Southern Africa as well as the Indian subcontinent." diff --git a/Bauhinia/variegata/about_this_collection/description_Bauhinia_variegata.yml b/Bauhinia/variegata/about_this_collection/description_Bauhinia_variegata.yml index 484a6d14..f15e7558 100644 --- a/Bauhinia/variegata/about_this_collection/description_Bauhinia_variegata.yml +++ b/Bauhinia/variegata/about_this_collection/description_Bauhinia_variegata.yml @@ -5,9 +5,10 @@ species: variegata abbrev: bauva commonName: mountain ebony, orchid tree description: "A small deciduous tree native to an area from China through Southeast Asia to the Indian subcontinent. Edible buds are widely used as an ingredient in many subcontinent recipes." -resources: strains: - identifier: HK4 accession: HK4 name: HK4 + origin: China + description: "A small deciduous tree native to an area from China through Southeast Asia to the Indian subcontinent. Edible buds are widely used as an ingredient in many subcontinent recipes." From 75bb332199af7ff3a191c1ae52d1e24812a1817c Mon Sep 17 00:00:00 2001 From: Steven Cannon Date: Mon, 18 Dec 2023 19:50:11 -0600 Subject: [PATCH 55/57] Update md5 checksums for all annotation collections to reflect updated gene_models_main.bed files --- .../CHECKSUM.CIAT22838.gnm1.ann1.ZM3R.md5 | 58 +++++++------ .../CHECKSUM.V14167.gnm1.ann1.cxSM.md5 | 57 ++++++------- .../CHECKSUM.BaileyII.gnm1.ann1.PQM7.md5 | 62 +++++++------- .../CHECKSUM.Tifrunner.gnm1.ann1.CCJH.md5 | 66 +++++++-------- .../CHECKSUM.Tifrunner.gnm2.ann1.4K0L.md5 | 70 ++++++++-------- .../CHECKSUM.Tifrunner.gnm2.ann2.PVFB.md5 | 69 ++++++++-------- .../CHECKSUM.K30076.gnm1.ann1.J37m.md5 | 56 ++++++------- .../CHECKSUM.ICPL87119.gnm1.ann1.Y27M.md5 | 62 +++++++------- .../CHECKSUM.ICPL87119.gnm2.ann1.L3ZH.md5 | 59 +++++++------- .../CHECKSUM.ISC453364.gnm3.ann1.3N1M.md5 | 34 ++++++++ .../CHECKSUM.CDCFrontier.gnm1.ann1.nRhs.md5 | 68 ++++++++-------- .../CHECKSUM.CDCFrontier.gnm2.ann1.9M1L.md5 | 61 +++++++------- .../CHECKSUM.CDCFrontier.gnm3.ann1.NPD7.md5 | 23 +++--- .../CHECKSUM.ICC4958.gnm2.ann1.LCVX.md5 | 63 +++++++-------- .../CHECKSUM.S2Drd065.gnm1.ann1.YZ9H.md5 | 23 +++--- .../CHECKSUM.Besev079.gnm1.ann1.F01Z.md5 | 23 +++--- .../CHECKSUM.WAFC.gnm1.ann1.RTP9.md5 | 37 +++++---- .../CHECKSUM.G1403.gnm1.ann1.XNZQ.md5 | 46 +++++------ .../CHECKSUM.G1267.gnm1.ann1.HRFD.md5 | 45 +++++------ .../CHECKSUM.G1134.gnm1.ann1.4BJM.md5 | 45 +++++------ .../CHECKSUM.G1718.gnm1.ann1.2KSV.md5 | 45 +++++------ .../CHECKSUM.58-161.gnm1.ann1.HJ1K.md5 | 59 +++++++------- .../CHECKSUM.Amsoy.gnm1.ann1.6S5P.md5 | 59 +++++++------- .../CHECKSUM.DongNongNo_50.gnm1.ann1.QSDB.md5 | 59 +++++++------- .../CHECKSUM.FengDiHuang.gnm1.ann1.P6HL.md5 | 59 +++++++------- .../CHECKSUM.FiskebyIII.gnm1.ann1.SS25.md5 | 73 ++++++++--------- .../CHECKSUM.HanDouNo_5.gnm1.ann1.ZS7M.md5 | 59 +++++++------- ...ECKSUM.Hefeng25_IGA1002.gnm1.ann1.320V.md5 | 43 +++++----- .../CHECKSUM.HeiHeNo_43.gnm1.ann1.PDXG.md5 | 59 +++++++------- ...HECKSUM.Huaxia3_IGA1007.gnm1.ann1.LKC7.md5 | 47 +++++------ .../CHECKSUM.Hwangkeum.gnm1.ann1.1G4F.md5 | 64 +++++++-------- .../CHECKSUM.JD17.gnm1.ann1.CLFP.md5 | 63 +++++++-------- .../CHECKSUM.JiDouNo_17.gnm1.ann1.X5PX.md5 | 59 +++++++------- .../CHECKSUM.JinDouNo_23.gnm1.ann1.SGJW.md5 | 59 +++++++------- ...HECKSUM.Jinyuan_IGA1006.gnm1.ann1.2NNX.md5 | 43 +++++----- .../CHECKSUM.JuXuanNo_23.gnm1.ann1.H8PW.md5 | 59 +++++++------- .../CHECKSUM.KeShanNo_1.gnm1.ann1.2YX4.md5 | 59 +++++++------- .../CHECKSUM.Lee.gnm1.ann1.6NZV.md5 | 69 ++++++++-------- .../CHECKSUM.Lee.gnm2.ann1.1FNT.md5 | 61 +++++++------- .../CHECKSUM.PI_398296.gnm1.ann1.B0XR.md5 | 59 +++++++------- .../CHECKSUM.PI_548362.gnm1.ann1.LL84.md5 | 59 +++++++------- .../CHECKSUM.QiHuangNo_34.gnm1.ann1.WHRV.md5 | 59 +++++++------- ...HECKSUM.ShiShengChangYe.gnm1.ann1.VLGS.md5 | 59 +++++++------- .../CHECKSUM.TieFengNo_18.gnm1.ann1.7GR4.md5 | 59 +++++++------- ...HECKSUM.TieJiaSiLiHuang.gnm1.ann1.W70Z.md5 | 59 +++++++------- ...ECKSUM.TongShanTianEDan.gnm1.ann1.56XW.md5 | 59 +++++++------- .../CHECKSUM.WanDouNo_28.gnm1.ann1.NLYP.md5 | 59 +++++++------- ...ECKSUM.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.md5 | 43 +++++----- .../CHECKSUM.Wm82.gnm1.ann1.DvBy.md5 | 66 +++++++-------- .../CHECKSUM.Wm82.gnm2.ann1.RVB6.md5 | 75 ++++++++--------- .../CHECKSUM.Wm82.gnm4.ann1.T8TQ.md5 | 77 +++++++++--------- .../CHECKSUM.Wm82_IGA1008.gnm1.ann1.FGN6.md5 | 43 +++++----- .../CHECKSUM.Wm82_ISU01.gnm2.ann1.FGFB.md5 | 77 +++++++++--------- .../CHECKSUM.XuDouNo_1.gnm1.ann1.G2T7.md5 | 59 +++++++------- .../CHECKSUM.YuDouNo_22.gnm1.ann1.HCQ1.md5 | 59 +++++++------- .../CHECKSUM.Zh13.gnm1.ann1.8VV3.md5 | 63 +++++++-------- .../CHECKSUM.Zh13.gnm2.ann1.FJ3G.md5 | 65 +++++++-------- .../CHECKSUM.Zh13_IGA1005.gnm1.ann1.87Z5.md5 | 43 +++++----- .../CHECKSUM.Zh35_IGA1004.gnm1.ann1.RGN6.md5 | 43 +++++----- ...SUM.ZhangChunManCangJin.gnm1.ann1.7HPB.md5 | 59 +++++++------- .../CHECKSUM.Zhutwinning2.gnm1.ann1.ZTTQ.md5 | 59 +++++++------- .../CHECKSUM.ZiHuaNo_4.gnm1.ann1.FCFQ.md5 | 59 +++++++------- .../CHECKSUM.F_IGA1003.gnm1.ann1.G61B.md5 | 45 +++++------ .../CHECKSUM.PI483463.gnm1.ann1.3Q3Q.md5 | 65 +++++++-------- .../CHECKSUM.PI_549046.gnm1.ann1.65KD.md5 | 59 +++++++------- .../CHECKSUM.PI_562565.gnm1.ann1.1JD2.md5 | 59 +++++++------- .../CHECKSUM.PI_578357.gnm1.ann1.0ZKP.md5 | 59 +++++++------- .../CHECKSUM.W05.gnm1.ann1.T47J.md5 | 65 +++++++-------- .../CHECKSUM.G1974.gnm1.ann1.F257.md5 | 45 +++++------ .../CHECKSUM.G1300.gnm1.ann1.RRK6.md5 | 45 +++++------ .../CHECKSUM.Highworth.gnm1.ann1.HJ3B.md5 | 40 +++++---- .../CHECKSUM.CDC_Redberry.gnm2.ann1.5FB4.md5 | 35 ++++---- .../CHECKSUM.IG_72815.gnm1.ann1.R90F.md5 | 36 ++++----- .../CHECKSUM.MG20.gnm3.ann1.WF9B.md5 | 75 ++++++++--------- .../CHECKSUM.Amiga.gnm1.ann1.3GKS.md5 | 42 +++++----- .../CHECKSUM.Tanjil.gnm1.ann1.nnV9.md5 | 55 ++++++------- .../CHECKSUM.XinJiangDaYe.gnm1.ann1.RKB9.md5 | 43 +++++----- .../CHECKSUM.A17.gnm5.ann1_6.L2RX.md5 | 48 ++++++----- .../CHECKSUM.A17_HM341.gnm4.ann2.G3ZY.md5 | 59 +++++++------- .../CHECKSUM.HM004.gnm1.ann1.2XTB.md5 | 47 +++++------ .../CHECKSUM.HM010.gnm1.ann1.WV9J.md5 | 46 +++++------ .../CHECKSUM.HM022.gnm1.ann1.6C8N.md5 | 46 +++++------ .../CHECKSUM.HM023.gnm1.ann1.WZN8.md5 | 46 +++++------ .../CHECKSUM.HM034.gnm1.ann1.YR6S.md5 | 46 +++++------ .../CHECKSUM.HM050.gnm1.ann1.GWRX.md5 | 46 +++++------ .../CHECKSUM.HM056.gnm1.ann1.CHP6.md5 | 46 +++++------ .../CHECKSUM.HM058.gnm1.ann1.LXPZ.md5 | 46 +++++------ .../CHECKSUM.HM060.gnm1.ann1.H41P.md5 | 46 +++++------ .../CHECKSUM.HM095.gnm1.ann1.55W4.md5 | 46 +++++------ .../CHECKSUM.HM125.gnm1.ann1.KY5W.md5 | 46 +++++------ .../CHECKSUM.HM129.gnm1.ann1.7FTD.md5 | 46 +++++------ .../CHECKSUM.HM185.gnm1.ann1.GB3D.md5 | 46 +++++------ .../CHECKSUM.HM324.gnm1.ann1.SQH2.md5 | 46 +++++------ .../CHECKSUM.R108.gnmHiC_1.ann1.Y8NH.md5 | 42 +++++----- .../CHECKSUM.R108_HM340.gnm1.ann1.85YW.md5 | 62 +++++++------- .../CHECKSUM.Frijol_Bayo.gnm1.ann1.ML22.md5 | 60 +++++++------- .../CHECKSUM.W6_15578.gnm2.ann1.LVZ1.md5 | 59 +++++++------- .../CHECKSUM.G27455.gnm1.ann1.JD7C.md5 | 81 +++++++++---------- .../CHECKSUM.5-593.gnm1.ann1.3FBJ.md5 | 60 +++++++------- .../CHECKSUM.G19833.gnm1.ann1.pScz.md5 | 61 +++++++------- .../CHECKSUM.G19833.gnm2.ann1.PB8d.md5 | 61 +++++++------- .../CHECKSUM.LaborOvalle.gnm1.ann1.L1DY.md5 | 58 ++++++------- .../CHECKSUM.UI111.gnm1.ann1.8L4N.md5 | 65 +++++++-------- .../CHECKSUM.Cameor.gnm1.ann1.7SZR.md5 | 54 ++++++------- .../CHECKSUM.MilvusB.gnm2.ann1.DFgp.md5 | 60 +++++++------- .../CHECKSUM.Daliak.gnm2.ann1.MFKF.md5 | 58 ++++++------- .../CHECKSUM.Hedin2.gnm1.ann1.PTNK.md5 | 73 ++++++++--------- .../CHECKSUM.Tiffany.gnm1.ann1.Y54X.md5 | 61 +++++++------- .../CHECKSUM.Gyeongwon.gnm3.ann1.3Nz5.md5 | 59 +++++++------- .../CHECKSUM.Shumari.gnm1.ann1.8BRS.md5 | 60 +++++++------- .../CHECKSUM.VC1973A.gnm6.ann1.M1Qs.md5 | 45 +++++------ .../CHECKSUM.VC1973A.gnm7.ann1.RWBG.md5 | 46 +++++------ .../CHECKSUM.CB5-2.gnm1.ann1.0GKC.md5 | 54 ++++++------- .../CHECKSUM.IT97K-499-35.gnm1.ann1.zb5D.md5 | 68 +++++++--------- .../CHECKSUM.IT97K-499-35.gnm1.ann2.FD7K.md5 | 53 ++++++------ .../CHECKSUM.Sanzi.gnm1.ann1.HFH8.md5 | 54 ++++++------- .../CHECKSUM.Suvita2.gnm1.ann1.1PF6.md5 | 54 ++++++------- .../CHECKSUM.TZ30.gnm1.ann2.59NL.md5 | 54 ++++++------- .../CHECKSUM.UCR779.gnm1.ann1.VF6G.md5 | 56 ++++++------- .../CHECKSUM.Xiabao_II.gnm1.ann1.4JFL.md5 | 36 ++++----- .../CHECKSUM.ZN016.gnm1.ann2.C7YV.md5 | 54 ++++++------- 121 files changed, 3124 insertions(+), 3491 deletions(-) create mode 100644 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/CHECKSUM.ISC453364.gnm3.ann1.3N1M.md5 diff --git a/Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/CHECKSUM.CIAT22838.gnm1.ann1.ZM3R.md5 b/Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/CHECKSUM.CIAT22838.gnm1.ann1.ZM3R.md5 index 3c29b690..c23ec90f 100644 --- a/Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/CHECKSUM.CIAT22838.gnm1.ann1.ZM3R.md5 +++ b/Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/CHECKSUM.CIAT22838.gnm1.ann1.ZM3R.md5 @@ -1,31 +1,27 @@ -9d23627006c67a6edc4b7d54baa4840d ./aesev.CIAT22838.gnm1.ann1.ZM3R.iprscan.gff3.gz -5362c8ec30aee45ebd22b07f15100b01 ./aesev.CIAT22838.gnm1.ann1.ZM3R.cds.bed.gz -54ebe0af9f182e724acd81f120b030c4 ./aesev.CIAT22838.gnm1.ann1.ZM3R.cds.fna.gz.fai -35cf2cc10e22ea8d4ddb0e6664a5f79b ./aesev.CIAT22838.gnm1.ann1.ZM3R.mrna_primary.fna.gz.fai -d9e6007bae48ceec68b274e8210e8750 ./aesev.CIAT22838.gnm1.ann1.ZM3R.cds_primary.fna.gz.fai -38004d790cc7c700ffb9934b27d2666e ./README.CIAT22838.gnm1.ann1.ZM3R.yml -61d7375369302e9b7a334dea5276bf9d ./aesev.CIAT22838.gnm1.ann1.ZM3R.legfed_v1_0.M65K.pathway.tsv.gz -5990008661421555f6236f08958034cd ./aesev.CIAT22838.gnm1.ann1.ZM3R.mrna.fna.gz.fai -fb1378b44dc6015a39d92d89594dd6fc ./aesev.CIAT22838.gnm1.ann1.ZM3R.protein.faa.gz.gzi -6d9a0b82512695bbd3fe6b69b251db8a ./aesev.CIAT22838.gnm1.ann1.ZM3R.protein_primary.faa.gz.fai -42110e57fa2e04d2b7860dcfdabc5ee2 ./aesev.CIAT22838.gnm1.ann1.ZM3R.mrna_primary.fna.gz -4fef0664e395867d84b291ebd3d98aac ./aesev.CIAT22838.gnm1.ann1.ZM3R.mrna.fna.gz -42db440be4db0dc9a80e51cba39916f7 ./aesev.CIAT22838.gnm1.ann1.ZM3R.legfed_v1_0.M65K.gfa.tsv.gz -f0e365a0556703d30515a1bcd0da6128 ./CHANGES.CIAT22838.gnm1.ann1.ZM3R.txt -affdeedec0b3ff6dd874a0ff895d25cb ./aesev.CIAT22838.gnm1.ann1.ZM3R.gene_models_main.gff3.gz -5d4e730b02c9542fd838b3b19531e514 ./aesev.CIAT22838.gnm1.ann1.ZM3R.cds.bed.gz.tbi -4fda34f042f25689d6d0c2c08f403b85 ./aesev.CIAT22838.gnm1.ann1.ZM3R.gene_models_main.gff3.gz.tbi -893b7a74fdd06027751b1d45601eb325 ./aesev.CIAT22838.gnm1.ann1.ZM3R.mrna.fna.gz.gzi -96f785722cb0fa3ec2979dee984cd650 ./aesev.CIAT22838.gnm1.ann1.ZM3R.protein.faa.gz.fai -bc3ab15bbd800bf83f2cf2a3ebab49ab ./aesev.CIAT22838.gnm1.ann1.ZM3R.protein_primary.faa.gz.gzi -87183e40f65b17daeb7b7fe901e5b9ba ./aesev.CIAT22838.gnm1.ann1.ZM3R.cds.fna.gz -929232954197543c335b7634ba1abc7b ./aesev.CIAT22838.gnm1.ann1.ZM3R.cds_primary.fna.gz.gzi -75a32e17fede12550dfab085913cdca3 ./aesev.CIAT22838.gnm1.ann1.ZM3R.protein_primary.faa.gz -2e5c7432db0329adf413523cf35ed1c9 ./aesev.CIAT22838.gnm1.ann1.ZM3R.cds.fna.gz.gzi -3321286b5bfd027ad0d29cf845092149 ./BUSCO/aesev.CIAT22838.gnm1.ann1.ZM3R.busco.fabales_odb10.short_summary.json -882c873f45b8c097868643016918f676 ./BUSCO/aesev.CIAT22838.gnm1.ann1.ZM3R.busco.fabales_odb10.full_table.tsv.gz -1941c3d9ae729e9ae3312c4710973f92 ./BUSCO/aesev.CIAT22838.gnm1.ann1.ZM3R.busco.fabales_odb10.short_summary.txt -b68b5cf7342047f8364b9772ce5808f0 ./aesev.CIAT22838.gnm1.ann1.ZM3R.mrna_primary.fna.gz.gzi -097cd3ea0134f656e4681ad2d563abf3 ./aesev.CIAT22838.gnm1.ann1.ZM3R.cds_primary.fna.gz -cd039d1453d6b0c8fd03db2e7ca9b98b ./aesev.CIAT22838.gnm1.ann1.ZM3R.protein.faa.gz -e9b603f2ea59d26ca6ba60715cc9118d ./aesev.CIAT22838.gnm1.ann1.ZM3R.iprscan.gff3.gz.tbi +097cd3ea0134f656e4681ad2d563abf3 Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.cds_primary.fna.gz +d9e6007bae48ceec68b274e8210e8750 Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.cds_primary.fna.gz.fai +929232954197543c335b7634ba1abc7b Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.cds_primary.fna.gz.gzi +87183e40f65b17daeb7b7fe901e5b9ba Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.cds.fna.gz +54ebe0af9f182e724acd81f120b030c4 Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.cds.fna.gz.fai +2e5c7432db0329adf413523cf35ed1c9 Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.cds.fna.gz.gzi +8e4af7485c6c101b865a6560d2465b89 Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.gene_models_main.bed.gz +06a7f61a0d8ddfae616e785d917ce7ba Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.gene_models_main.bed.gz.tbi +affdeedec0b3ff6dd874a0ff895d25cb Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.gene_models_main.gff3.gz +4fda34f042f25689d6d0c2c08f403b85 Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.gene_models_main.gff3.gz.tbi +9d23627006c67a6edc4b7d54baa4840d Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.iprscan.gff3.gz +e9b603f2ea59d26ca6ba60715cc9118d Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.iprscan.gff3.gz.tbi +42db440be4db0dc9a80e51cba39916f7 Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.legfed_v1_0.M65K.gfa.tsv.gz +42110e57fa2e04d2b7860dcfdabc5ee2 Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.mrna_primary.fna.gz +35cf2cc10e22ea8d4ddb0e6664a5f79b Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.mrna_primary.fna.gz.fai +b68b5cf7342047f8364b9772ce5808f0 Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.mrna_primary.fna.gz.gzi +4fef0664e395867d84b291ebd3d98aac Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.mrna.fna.gz +5990008661421555f6236f08958034cd Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.mrna.fna.gz.fai +893b7a74fdd06027751b1d45601eb325 Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.mrna.fna.gz.gzi +75a32e17fede12550dfab085913cdca3 Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.protein_primary.faa.gz +6d9a0b82512695bbd3fe6b69b251db8a Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.protein_primary.faa.gz.fai +bc3ab15bbd800bf83f2cf2a3ebab49ab Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.protein_primary.faa.gz.gzi +cd039d1453d6b0c8fd03db2e7ca9b98b Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.protein.faa.gz +96f785722cb0fa3ec2979dee984cd650 Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.protein.faa.gz.fai +fb1378b44dc6015a39d92d89594dd6fc Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/aesev.CIAT22838.gnm1.ann1.ZM3R.protein.faa.gz.gzi +f0e365a0556703d30515a1bcd0da6128 Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/CHANGES.CIAT22838.gnm1.ann1.ZM3R.txt +38004d790cc7c700ffb9934b27d2666e Aeschynomene/evenia/annotations/CIAT22838.gnm1.ann1.ZM3R/README.CIAT22838.gnm1.ann1.ZM3R.yml diff --git a/Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/CHECKSUM.V14167.gnm1.ann1.cxSM.md5 b/Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/CHECKSUM.V14167.gnm1.ann1.cxSM.md5 index 2891512f..49353d65 100644 --- a/Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/CHECKSUM.V14167.gnm1.ann1.cxSM.md5 +++ b/Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/CHECKSUM.V14167.gnm1.ann1.cxSM.md5 @@ -1,31 +1,26 @@ -217710390cccdf63e1ffb93e2048fd2d ./CHANGES.V14167.gnm1.ann1.cxSM.txt -f8d5548ec63cb21524f3f730ccfcf661 ./aradu.V14167.gnm1.ann1.cxSM.info_annot_AHRD_full.txt.gz -7a27e9cb0fd9629f530b448dfb4484ff ./aradu.V14167.gnm1.ann1.cxSM.legfed_v1_0.M65K.gfa.tsv.gz -ff86315982efaf4847854a99866fa295 ./busco/aradu.V14167.gnm1.ann1.cxSM.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.aradu.V14167.gnm1.ann1.cxSM.protein.faa.gz_busco.txt -4b92275875aa77af9098825d3c3a01df ./aradu.V14167.gnm1.ann1.cxSM.info_annot_AHRD_slim.txt.gz -46681bccf0406e954f5840030f6b52cd ./MANIFEST.V14167.gnm1.ann1.cxSM.descriptions.yml -680917d74f50a5c00a2749a895a81434 ./aradu.V14167.gnm1.ann1.cxSM.protein.faa.gz.gzi -07bdf8cc7eee7acd61b421581d36ea55 ./aradu.V14167.gnm1.ann1.cxSM.cds.fna.gz.fai -5e3ad16edb5d0bda6743c5a5f9e940e6 ./aradu.V14167.gnm1.ann1.cxSM.cds.bed.gz -3aa4503cb8b3e1a809774a0eec5b7369 ./aradu.V14167.gnm1.ann1.cxSM.mrna.fna.gz.fai -7d3d7019a42d5c6c478830c6aac053ea ./aradu.V14167.gnm1.ann1.cxSM.mrna.fna.gz -f5ee64182c4406ae963be466e3bf95de ./README.V14167.gnm1.ann1.cxSM.yml -40b9500930161e5eb70b59d76b9b90fc ./aradu.V14167.gnm1.ann1.cxSM.protein_lowqual_or_TE.faa.gz -f7b2a91a3a30ed98d3f9a264fbb5181b ./aradu.V14167.gnm1.ann1.cxSM.mrna.fna.gz.gzi -afc21a1c72a656289e2737273fd75008 ./original_gene_naming_scheme.txt -a7fc7f86966a3e2837b07d621d423df8 ./aradu.V14167.gnm1.ann1.cxSM.cds.fna.gz -606496fde0e2e2ab5c70ba43d72353a3 ./aradu.V14167.gnm1.ann1.cxSM.protein.faa.gz -ffc43398ab222d89a7e74957757f1692 ./aradu.V14167.gnm1.ann1.cxSM.gene_models_main.gff3.gz -1e7d9199736100243a64920e7e73b208 ./original_usage_agreement.txt -7bba14033c1d04d380e50f505b7a33bc ./aradu.V14167.gnm1.ann1.cxSM.protein.faa.gz.fai -17dc3cf88efbf70a921e617520b17b09 ./aradu.V14167.gnm1.ann1.cxSM.cds.fna.gz.gzi -19c9eb6a5314a84b44e6a9ed8532a66d ./aradu.V14167.gnm1.ann1.cxSM.mrna_lowqual_or_TE.fna.gz -43bd3cf499e4c12364da6482e6b1060d ./MANIFEST.V14167.gnm1.ann1.cxSM.correspondence.yml -fcf645a3b2256ebe3e0f051f84c362ca ./aradu.V14167.gnm1.ann1.cxSM.gene_models_main.gff3.gz.tbi -80ae3ade772031092892498ddd5ae88c ./aradu.V14167.gnm1.ann1.cxSM.info_AED_scores.txt.gz -c2e4305a8382fd78fe08de9b3a137d4c ./aradu.V14167.gnm1.ann1.cxSM.gene_models_lowqual_or_TE.gff.gz -51d0f8ef9718833862cab4cc47b4fe3a ./aradu.V14167.gnm1.ann1.cxSM.cds.bed.gz.tbi -30552bb49c1849334f57414bef1c911e ./aradu.V14167.gnm1.ann1.cxSM.pathway.tsv.gz -6980112817725bc2b1bb40d368d5ba88 ./BUSCO/aradu.V14167.gnm1.ann1.cxSM.busco.fabales_odb10.full_table.tsv.gz -bde0afe5587687af1651f867392ec8ff ./BUSCO/aradu.V14167.gnm1.ann1.cxSM.busco.fabales_odb10.short_summary.txt -d209f0f1b69d54a8eea74f350d85d01a ./BUSCO/aradu.V14167.gnm1.ann1.cxSM.busco.fabales_odb10.short_summary.json +a7fc7f86966a3e2837b07d621d423df8 Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.cds.fna.gz +07bdf8cc7eee7acd61b421581d36ea55 Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.cds.fna.gz.fai +17dc3cf88efbf70a921e617520b17b09 Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.cds.fna.gz.gzi +c2e4305a8382fd78fe08de9b3a137d4c Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.gene_models_lowqual_or_TE.gff.gz +c99cbca77b37d5f36a7ac6a0a7a68668 Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.gene_models_main.bed.gz +3737ef49bb8ca18341cd716df77e108c Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.gene_models_main.bed.gz.tbi +ffc43398ab222d89a7e74957757f1692 Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.gene_models_main.gff3.gz +fcf645a3b2256ebe3e0f051f84c362ca Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.gene_models_main.gff3.gz.tbi +80ae3ade772031092892498ddd5ae88c Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.info_AED_scores.txt.gz +f8d5548ec63cb21524f3f730ccfcf661 Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.info_annot_AHRD_full.txt.gz +4b92275875aa77af9098825d3c3a01df Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.info_annot_AHRD_slim.txt.gz +7a27e9cb0fd9629f530b448dfb4484ff Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.legfed_v1_0.M65K.gfa.tsv.gz +19c9eb6a5314a84b44e6a9ed8532a66d Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.mrna_lowqual_or_TE.fna.gz +7d3d7019a42d5c6c478830c6aac053ea Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.mrna.fna.gz +3aa4503cb8b3e1a809774a0eec5b7369 Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.mrna.fna.gz.fai +f7b2a91a3a30ed98d3f9a264fbb5181b Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.mrna.fna.gz.gzi +40b9500930161e5eb70b59d76b9b90fc Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.protein_lowqual_or_TE.faa.gz +606496fde0e2e2ab5c70ba43d72353a3 Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.protein.faa.gz +7bba14033c1d04d380e50f505b7a33bc Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.protein.faa.gz.fai +680917d74f50a5c00a2749a895a81434 Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/aradu.V14167.gnm1.ann1.cxSM.protein.faa.gz.gzi +217710390cccdf63e1ffb93e2048fd2d Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/CHANGES.V14167.gnm1.ann1.cxSM.txt +43bd3cf499e4c12364da6482e6b1060d Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/MANIFEST.V14167.gnm1.ann1.cxSM.correspondence.yml +46681bccf0406e954f5840030f6b52cd Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/MANIFEST.V14167.gnm1.ann1.cxSM.descriptions.yml +afc21a1c72a656289e2737273fd75008 Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/original_gene_naming_scheme.txt +1e7d9199736100243a64920e7e73b208 Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/original_usage_agreement.txt +f5ee64182c4406ae963be466e3bf95de Arachis/duranensis/annotations/V14167.gnm1.ann1.cxSM/README.V14167.gnm1.ann1.cxSM.yml diff --git a/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/CHECKSUM.BaileyII.gnm1.ann1.PQM7.md5 b/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/CHECKSUM.BaileyII.gnm1.ann1.PQM7.md5 index a8e8c56e..1e23e1dd 100644 --- a/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/CHECKSUM.BaileyII.gnm1.ann1.PQM7.md5 +++ b/Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/CHECKSUM.BaileyII.gnm1.ann1.PQM7.md5 @@ -1,32 +1,30 @@ -4ce4998ed242ec712a47a499607c67d4 ./arahy.BaileyII.gnm1.ann1.PQM7.iprscan.gff3.gz -c8af7ea9a8e0bac4d70b4a23276cd357 ./arahy.BaileyII.gnm1.ann1.PQM7.iprscan.gff3.gz.tbi -05cc37eaaafae25c1d05f8433694b74b ./arahy.BaileyII.gnm1.ann1.PQM7.protein_primary.faa.gz.fai -4e6397cc727b3e3f0555dc915de263fd ./arahy.BaileyII.gnm1.ann1.PQM7.legfed_v1_0.M65K.gfa.tsv.gz -4f3ea45a39352e256b707221996f8519 ./arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz.fai -5ab0441a4638cb21270a27b39a7b3f51 ./arahy.BaileyII.gnm1.ann1.PQM7.featid_map.tsv.gz -cf4d8036b1093eae9b2a7615ab720a8b ./arahy.BaileyII.gnm1.ann1.PQM7.protein.faa.gz.gzi -5648897603173e5c4b57e7613fba9e73 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz.fai -ecf9ffb317f0001d66c20d3215d74ff6 ./CHANGES.BaileyII.gnm1.ann1.PQM7.txt -8b5dcaea58e26c128630648733e7a296 ./arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.gff3.gz.tbi -96867c1af810c3d3cb0ea487f2cacf96 ./arahy.BaileyII.gnm1.ann1.PQM7.protein_primary.faa.gz -6ad8e897bc572391e5bbac140fd33764 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz -cb0021062b330884ca517852d88aee18 ./arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz.gzi -7598061dbaf537149cadb3ba40f607a0 ./MANIFEST.BaileyII.gnm1.ann1.PQM7.correspondence.yml -2aee8f192d394d54fcb2fafd210a4bdf ./arahy.BaileyII.gnm1.ann1.PQM7.mrna_primary.fna.gz.fai -1edc1c6239049b74e490c7f06c9b7607 ./arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz -f31ab431e5f847deb3409d7736604be6 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna_primary.fna.gz.gzi -7a650d98a8790240aecdb0ddc7974dad ./arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz -a403aae1aff3b6b68730518767c2933f ./arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz.fai -02dbedc18815323e30eec595fa556563 ./arahy.BaileyII.gnm1.ann1.PQM7.mrna.fna.gz.gzi -9da737be083ede7907ce5fcf9ab4dfbc ./arahy.BaileyII.gnm1.ann1.PQM7.cds.bed.gz -2d54a7d217f808791905ed31a7a4275c ./arahy.BaileyII.gnm1.ann1.PQM7.mrna_primary.fna.gz -eb85e3881396036eb05d0ab5fe6dfc53 ./arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.gff3.gz -20af3147d82effa2a44e84236daa22f7 ./arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz.gzi -c7d02a9f65f3c817de73275bf6e05192 ./arahy.BaileyII.gnm1.ann1.PQM7.protein.faa.gz.fai -42c355ec74fb824577b110ba271effdb ./arahy.BaileyII.gnm1.ann1.PQM7.protein.faa.gz -419d9bcc64228dbe31768e4388386267 ./MANIFEST.BaileyII.gnm1.ann1.PQM7.descriptions.yml -6fa6d30adb7fbd5f1abd51d0924e1a08 ./README.BaileyII.gnm1.ann1.PQM7.yml -10b11b555c4e324549a9f4ba3e2455c5 ./arahy.BaileyII.gnm1.ann1.PQM7.protein_primary.faa.gz.gzi -43a44f4e17df10c20583de776b8388b9 ./BUSCO/arahy.BaileyII.gnm1.ann1.PQM7.busco.fabales_odb10.full_table.tsv.gz -f107c0523dad3cc6afd56483b365f876 ./BUSCO/arahy.BaileyII.gnm1.ann1.PQM7.busco.fabales_odb10.short_summary.txt -a9bd2c5549a4fae499d530b5d54ebbaf ./BUSCO/arahy.BaileyII.gnm1.ann1.PQM7.busco.fabales_odb10.short_summary.json +7a650d98a8790240aecdb0ddc7974dad Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz +a403aae1aff3b6b68730518767c2933f Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz.fai +cb0021062b330884ca517852d88aee18 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.cds_primary.fna.gz.gzi +1edc1c6239049b74e490c7f06c9b7607 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz +4f3ea45a39352e256b707221996f8519 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz.fai +20af3147d82effa2a44e84236daa22f7 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.cds.fna.gz.gzi +5ab0441a4638cb21270a27b39a7b3f51 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.featid_map.tsv.gz +e045e8b131cd033a98485fe4c61eb099 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.bed.gz +a6ffec860c443b1c1992e752e5eac43d Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.bed.gz.tbi +eb85e3881396036eb05d0ab5fe6dfc53 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.gff3.gz +8b5dcaea58e26c128630648733e7a296 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.gene_models_main.gff3.gz.tbi +4ce4998ed242ec712a47a499607c67d4 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.iprscan.gff3.gz +c8af7ea9a8e0bac4d70b4a23276cd357 Arachis/hypogaea/annotations/BaileyII.gnm1.ann1.PQM7/arahy.BaileyII.gnm1.ann1.PQM7.iprscan.gff3.gz.tbi +4e6397cc727b3e3f0555dc915de263fd 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c1afd5f9..4fb9f5a1 100644 --- a/Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/CHECKSUM.K30076.gnm1.ann1.J37m.md5 +++ b/Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/CHECKSUM.K30076.gnm1.ann1.J37m.md5 @@ -1,30 +1,26 @@ -deb9e4680ae53ff812798689c51a12e7 ./araip.K30076.gnm1.ann1.J37m.info_annot_AHRD_slim.txt.gz -bb879e3fa600b00252dae8abaeb84cc6 ./araip.K30076.gnm1.ann1.J37m.genemodels_lowqual_or_TE.gff.gz -b3896b0ca4fc9aff8f4faf83b8704596 ./araip.K30076.gnm1.ann1.J37m.legfed_v1_0.M65K.gfa.tsv.gz -3bc5541dec4280eb0ff7a2be28f97023 ./araip.K30076.gnm1.ann1.J37m.mrna.fna.gz.gzi -64e48615a707b7e2805a4670df36855c ./araip.K30076.gnm1.ann1.J37m.cds.fna.gz -a03d4f1b282a010291cb323f86339779 ./araip.K30076.gnm1.ann1.J37m.info_AED_scores.txt.gz -23156921a537a575e5138e7681cfac75 ./busco/araip.K30076.gnm1.ann1.J37m.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.araip.K30076.gnm1.ann1.J37m.protein.faa.gz_busco.txt -66bd2ab322df59673312986592ccf805 ./MANIFEST.K30076.gnm1.ann1.J37m.correspondence.yml -59c0d233738d54750a299d23cc5d1470 ./araip.K30076.gnm1.ann1.J37m.protein.faa.gz.gzi -2c28f6152e6620e1d17a2598608e7598 ./araip.K30076.gnm1.ann1.J37m.info_annot_AHRD.txt.gz -ffc89ec803de489f920cabe70389bd3d ./araip.K30076.gnm1.ann1.J37m.cds.fna.gz.fai -dabdcf94959c79d8eb680f7b1bde165e ./MANIFEST.K30076.gnm1.ann1.J37m.descriptions.yml -ea505c6c177054e3465315081f27fab2 ./araip.K30076.gnm1.ann1.J37m.mrna_lowqual_or_TE.fna.gz -cc1087e47fef833032fbab1eaaf54cca ./araip.K30076.gnm1.ann1.J37m.protein.faa.gz -cf04c409255b943367523ae470ebbe8d ./araip.K30076.gnm1.ann1.J37m.protein_lowqual_or_TE.faa.gz -bde144e5b4f461c53fdbecaad5b60454 ./CHANGES.K30076.gnm1.ann1.J37m.txt -9d148a6f3875c3023eb16c50b16b665d ./araip.K30076.gnm1.ann1.J37m.cds.fna.gz.gzi -6de299bcafa58fa1081bd78ab8465c74 ./araip.K30076.gnm1.ann1.J37m.gene_models_main.gff3.gz -49c3b2c46ba7f4ab4f0b232e4116ab8b ./BUSCO/araip.K30076.gnm1.ann1.J37m.busco.fabales_odb10.full_table.tsv.gz -eac82e746cc79dc430fd4b2def2ab026 ./BUSCO/araip.K30076.gnm1.ann1.J37m.busco.fabales_odb10.short_summary.txt -363db34519e42d3ee0e2369aa9c102f9 ./BUSCO/araip.K30076.gnm1.ann1.J37m.busco.fabales_odb10.short_summary.json -d20397e9a1e84515e354cf6c6c12c735 ./README.K30076.gnm1.ann1.J37m.yml -f5a5e916765bee840ca8ac389905e54f ./araip.K30076.gnm1.ann1.J37m.protein.faa.gz.fai -1e7d9199736100243a64920e7e73b208 ./original_usage_agreement.txt -c15791ac1e9695219f606075399bd0ce ./araip.K30076.gnm1.ann1.J37m.mrna.fna.gz -b78eb20bdc13b044ea3a640a8a88744b ./araip.K30076.gnm1.ann1.J37m.cds.bed.gz.tbi -96613a6e5368c6ed6ead335cf0ff8599 ./araip.K30076.gnm1.ann1.J37m.gene_models_main.gff3.gz.tbi -b01e5090ee9591a2e8620658e4cbbbfd ./araip.K30076.gnm1.ann1.J37m.cds.bed.gz -cccf68802eebfbacd166722cd5e57526 ./araip.K30076.gnm1.ann1.J37m.mrna.fna.gz.fai -afc21a1c72a656289e2737273fd75008 ./original_gene_naming_scheme.txt +64e48615a707b7e2805a4670df36855c Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.cds.fna.gz +ffc89ec803de489f920cabe70389bd3d Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.cds.fna.gz.fai +9d148a6f3875c3023eb16c50b16b665d Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.cds.fna.gz.gzi +2f44846f0fb3aceadeccdd77aa6f2271 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.gene_models_main.bed.gz +7298d49b4db566617b2001518028330f Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.gene_models_main.bed.gz.tbi +6de299bcafa58fa1081bd78ab8465c74 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.gene_models_main.gff3.gz +96613a6e5368c6ed6ead335cf0ff8599 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.gene_models_main.gff3.gz.tbi +bb879e3fa600b00252dae8abaeb84cc6 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.genemodels_lowqual_or_TE.gff.gz +a03d4f1b282a010291cb323f86339779 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.info_AED_scores.txt.gz +deb9e4680ae53ff812798689c51a12e7 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.info_annot_AHRD_slim.txt.gz +2c28f6152e6620e1d17a2598608e7598 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.info_annot_AHRD.txt.gz +b3896b0ca4fc9aff8f4faf83b8704596 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.legfed_v1_0.M65K.gfa.tsv.gz +ea505c6c177054e3465315081f27fab2 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.mrna_lowqual_or_TE.fna.gz +c15791ac1e9695219f606075399bd0ce Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.mrna.fna.gz +cccf68802eebfbacd166722cd5e57526 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.mrna.fna.gz.fai +3bc5541dec4280eb0ff7a2be28f97023 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.mrna.fna.gz.gzi +cf04c409255b943367523ae470ebbe8d Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.protein_lowqual_or_TE.faa.gz +cc1087e47fef833032fbab1eaaf54cca Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.protein.faa.gz +f5a5e916765bee840ca8ac389905e54f Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.protein.faa.gz.fai +59c0d233738d54750a299d23cc5d1470 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/araip.K30076.gnm1.ann1.J37m.protein.faa.gz.gzi +bde144e5b4f461c53fdbecaad5b60454 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/CHANGES.K30076.gnm1.ann1.J37m.txt +66bd2ab322df59673312986592ccf805 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/MANIFEST.K30076.gnm1.ann1.J37m.correspondence.yml +dabdcf94959c79d8eb680f7b1bde165e Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/MANIFEST.K30076.gnm1.ann1.J37m.descriptions.yml +afc21a1c72a656289e2737273fd75008 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/original_gene_naming_scheme.txt +1e7d9199736100243a64920e7e73b208 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/original_usage_agreement.txt +d20397e9a1e84515e354cf6c6c12c735 Arachis/ipaensis/annotations/K30076.gnm1.ann1.J37m/README.K30076.gnm1.ann1.J37m.yml diff --git a/Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/CHECKSUM.ICPL87119.gnm1.ann1.Y27M.md5 b/Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/CHECKSUM.ICPL87119.gnm1.ann1.Y27M.md5 index d5e9964b..d98384e0 100644 --- a/Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/CHECKSUM.ICPL87119.gnm1.ann1.Y27M.md5 +++ b/Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/CHECKSUM.ICPL87119.gnm1.ann1.Y27M.md5 @@ -1,33 +1,29 @@ -59ba5fd6a71d4abbb9dad0bbe1979288 ./cajca.ICPL87119.gnm1.ann1.Y27M.info_annot_tRNA.gff.gz -1b95c0eff93003842633634db319d97a ./MANIFEST.ICPL87119.gnm1.ann1.Y27M.correspondence.yml -e4d6c25fd8040732dd12cf1a795900c2 ./README.ICPL87119.gnm1.ann1.Y27M.yml -1c82ad55efdf6cedd048371d8c6b4045 ./cajca.ICPL87119.gnm1.ann1.Y27M.mrna.fna.gz.gzi -164f9d6c8166fcf9925a786d42c2ad05 ./cajca.ICPL87119.gnm1.ann1.Y27M.info_annot_Trembl.txt.gz -c4eb71edcbd72809650f2d863e6e20fe ./cajca.ICPL87119.gnm1.ann1.Y27M.protein.faa.gz.gzi -5cc935fe6745c8b68630fa3f2a810942 ./cajca.ICPL87119.gnm1.ann1.Y27M.info_annot_miRNA.gff.gz -ab7421c295f4c4a5048c93b0b9b68c02 ./cajca.ICPL87119.gnm1.ann1.Y27M.info_annot_KEGG.txt.gz -bb92abe47a908b77565d9cb851b90c18 ./BUSCO/cajca.ICPL87119.gnm1.ann1.Y27M.busco.fabales_odb10.short_summary.txt -31d6b07c61c92c35ae82606f02c6100d ./BUSCO/cajca.ICPL87119.gnm1.ann1.Y27M.busco.fabales_odb10.short_summary.json -e6e3708a6a2061dc306151d7802b189a ./BUSCO/cajca.ICPL87119.gnm1.ann1.Y27M.busco.fabales_odb10.full_table.tsv.gz -848e2ae23ed4ef66d2092b8bac193739 ./cajca.ICPL87119.gnm1.ann1.Y27M.cds.bed.gz -afe1072dc71074cf3e6deeb9264e225e ./cajca.ICPL87119.gnm1.ann1.Y27M.info_annot_rRNA.gff.gz -60bc8a5b05ef6f6f22cf43775622f284 ./cajca.ICPL87119.gnm1.ann1.Y27M.cds.fna.gz.fai -7a4226e8e6fc4c24e953d795b25cad70 ./cajca.ICPL87119.gnm1.ann1.Y27M.legfed_v1_0.M65K.gfa.tsv.gz -c191a34ffd706b6bd912af837c50726f ./cajca.ICPL87119.gnm1.ann1.Y27M.protein_with_TEs.faa.gz -af8727486b3745bb06a468225759fbd3 ./cajca.ICPL87119.gnm1.ann1.Y27M.mrna.fna.gz -75da0c341c099850e0f6ac75c27f4501 ./cajca.ICPL87119.gnm1.ann1.Y27M.filterTE.gff.gz -49edaa7007273994ddfea935d6ee2617 ./cajca.ICPL87119.gnm1.ann1.Y27M.repeat_models.gff.gz -b8ad63e7c848ab51762f1f7010237f2f ./cajca.ICPL87119.gnm1.ann1.Y27M.TE.gff.gz -d001dd4891ef6c9bafecdad3f0eb5149 ./cajca.ICPL87119.gnm1.ann1.Y27M.gene_models_main.gff3.gz -3e97ba60a1322be0e0401a6978e4bd3d ./cajca.ICPL87119.gnm1.ann1.Y27M.protein.faa.gz -55bbe9efcd4988c4a0c859adbd88721a ./cajca.ICPL87119.gnm1.ann1.Y27M.info_annot_snRNA.gff.gz -4323328c8effd0cd67fadc64f3ebc6f8 ./cajca.ICPL87119.gnm1.ann1.Y27M.cds.fna.gz.gzi -4badaae7664bf886c4011aa995d74c8d ./cajca.ICPL87119.gnm1.ann1.Y27M.gene_models_main.gff3.gz.tbi -88ef3c744b12a6fc27d4d0025c09d9af ./cajca.ICPL87119.gnm1.ann1.Y27M.mrna_with_TEs.fna.gz -14bb1616d80139b3605b760ecf5811d3 ./MANIFEST.ICPL87119.gnm1.ann1.Y27M.descriptions.yml -02c70e80691e2a32bc36b27f72c07908 ./cajca.ICPL87119.gnm1.ann1.Y27M.protein.faa.gz.fai -dbf543000cd65913473f6276de044f14 ./cajca.ICPL87119.gnm1.ann1.Y27M.cds.fna.gz -a81a197a707c5db48eba366eec938841 ./cajca.ICPL87119.gnm1.ann1.Y27M.pathway.tsv.gz -8b0348c447f75e40600f26c83e184b0c ./cajca.ICPL87119.gnm1.ann1.Y27M.cds.bed.gz.tbi -156a4388185583b30e9534dd40b6c4a2 ./CHANGES.ICPL87119.gnm1.ann1.Y27M.txt -5db4ddacbde5f6888f291641ca74426b ./cajca.ICPL87119.gnm1.ann1.Y27M.mrna.fna.gz.fai +dbf543000cd65913473f6276de044f14 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.cds.fna.gz +60bc8a5b05ef6f6f22cf43775622f284 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.cds.fna.gz.fai +4323328c8effd0cd67fadc64f3ebc6f8 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.cds.fna.gz.gzi +75da0c341c099850e0f6ac75c27f4501 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.filterTE.gff.gz +6584a5b7b7f7c20533da73f4f944c6f8 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.gene_models_main.bed.gz +a0768f5152ee012329ffb32f49918a46 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.gene_models_main.bed.gz.tbi +d001dd4891ef6c9bafecdad3f0eb5149 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.gene_models_main.gff3.gz +4badaae7664bf886c4011aa995d74c8d Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.gene_models_main.gff3.gz.tbi +ab7421c295f4c4a5048c93b0b9b68c02 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.info_annot_KEGG.txt.gz +5cc935fe6745c8b68630fa3f2a810942 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.info_annot_miRNA.gff.gz +afe1072dc71074cf3e6deeb9264e225e Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.info_annot_rRNA.gff.gz +55bbe9efcd4988c4a0c859adbd88721a Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.info_annot_snRNA.gff.gz +164f9d6c8166fcf9925a786d42c2ad05 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.info_annot_Trembl.txt.gz +59ba5fd6a71d4abbb9dad0bbe1979288 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.info_annot_tRNA.gff.gz +7a4226e8e6fc4c24e953d795b25cad70 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.legfed_v1_0.M65K.gfa.tsv.gz +88ef3c744b12a6fc27d4d0025c09d9af Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.mrna_with_TEs.fna.gz +af8727486b3745bb06a468225759fbd3 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.mrna.fna.gz +5db4ddacbde5f6888f291641ca74426b Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.mrna.fna.gz.fai +1c82ad55efdf6cedd048371d8c6b4045 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.mrna.fna.gz.gzi +c191a34ffd706b6bd912af837c50726f Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.protein_with_TEs.faa.gz +3e97ba60a1322be0e0401a6978e4bd3d Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.protein.faa.gz +02c70e80691e2a32bc36b27f72c07908 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.protein.faa.gz.fai +c4eb71edcbd72809650f2d863e6e20fe Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.protein.faa.gz.gzi +49edaa7007273994ddfea935d6ee2617 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.repeat_models.gff.gz +b8ad63e7c848ab51762f1f7010237f2f Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/cajca.ICPL87119.gnm1.ann1.Y27M.TE.gff.gz +156a4388185583b30e9534dd40b6c4a2 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/CHANGES.ICPL87119.gnm1.ann1.Y27M.txt +1b95c0eff93003842633634db319d97a Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/MANIFEST.ICPL87119.gnm1.ann1.Y27M.correspondence.yml +14bb1616d80139b3605b760ecf5811d3 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/MANIFEST.ICPL87119.gnm1.ann1.Y27M.descriptions.yml +e4d6c25fd8040732dd12cf1a795900c2 Cajanus/cajan/annotations/ICPL87119.gnm1.ann1.Y27M/README.ICPL87119.gnm1.ann1.Y27M.yml diff --git a/Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/CHECKSUM.ICPL87119.gnm2.ann1.L3ZH.md5 b/Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/CHECKSUM.ICPL87119.gnm2.ann1.L3ZH.md5 index ea4ce25f..a7b4aaee 100644 --- a/Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/CHECKSUM.ICPL87119.gnm2.ann1.L3ZH.md5 +++ b/Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/CHECKSUM.ICPL87119.gnm2.ann1.L3ZH.md5 @@ -1,30 +1,29 @@ -b8dc7d53b5618b7e7d2266e64a8f431d ./cajca.ICPL87119.gnm2.ann1.L3ZH.cds.fna.gz.fai -46d96216eb7877a0c82a4e1907d26668 ./cajca.ICPL87119.gnm2.ann1.L3ZH.legfed_v1_0.M65K.gfa.tsv.gz -59dd48fd3faa0a0d9ef76703dc9279d1 ./cajca.ICPL87119.gnm2.ann1.L3ZH.protein.faa.gz.fai -4b6eca6aa9088f68787dfcf0c710e914 ./cajca.ICPL87119.gnm2.ann1.L3ZH.iprscan.gff3.gz -55125fde7abdcbf7250dea4d242c8523 ./cajca.ICPL87119.gnm2.ann1.L3ZH.mrna_primary.fna.gz.fai -dc9729933fa6b8da333a1238ec2f03e1 ./cajca.ICPL87119.gnm2.ann1.L3ZH.gene_models_main.gff3.gz -bcf54cd6870f5fb74fc872d82f6b84ef ./CHANGES.ICPL87119.gnm2.ann1.L3ZH.txt -eb479c07b70abdb9946801d302663fd1 ./cajca.ICPL87119.gnm2.ann1.L3ZH.cds_primary.fna.gz -11f37627e0271cf5925594f81260bdda ./cajca.ICPL87119.gnm2.ann1.L3ZH.cds.fna.gz -04aa6a756a6b4aa109af4813fa8aa84c ./cajca.ICPL87119.gnm2.ann1.L3ZH.protein_primary.faa.gz.fai -0c355749e44b4545341aeab5d57f4581 ./README.ICPL87119.gnm2.ann1.L3ZH.yml -4b1904474a7a561c1144d2bcf5c5c1e1 ./cajca.ICPL87119.gnm2.ann1.L3ZH.mrna.fna.gz.fai -7864741032ae867a5db479a58d869d27 ./cajca.ICPL87119.gnm2.ann1.L3ZH.iprscan.gff3.gz.tbi -5d2a0fdd6c8bec50e6b25c8549d278c1 ./cajca.ICPL87119.gnm2.ann1.L3ZH.cds_primary.fna.gz.gzi -01016effa54b1a70fe630b933d022653 ./cajca.ICPL87119.gnm2.ann1.L3ZH.protein_primary.faa.gz -e3dfb53d3834f0be9373a9085a26e627 ./cajca.ICPL87119.gnm2.ann1.L3ZH.mrna.fna.gz -dfb8dbc2dda1833e9393b5df661528b0 ./cajca.ICPL87119.gnm2.ann1.L3ZH.cds_primary.fna.gz.fai -ba5bdfb02c919053850fefcb2d4c9534 ./MANIFEST.ICPL87119.gnm2.ann1.L3ZH.corresponding.yml -bbf414d3545a2bcb6fe3a93b57ed45c4 ./cajca.ICPL87119.gnm2.ann1.L3ZH.mrna.fna.gz.gzi -9c30e4f21242526a858966902f97029c ./cajca.ICPL87119.gnm2.ann1.L3ZH.protein_primary.faa.gz.gzi -d1ffc089b7b8d7f42b8e2d65d6a6c77e ./cajca.ICPL87119.gnm2.ann1.L3ZH.mrna_primary.fna.gz -848cf26b39da1c81e6168118f0fcb5f6 ./MANIFEST.ICPL87119.gnm2.ann1.L3ZH.descriptions.yml -caacd9ccb3517482b66eb0ec155e7353 ./BUSCO/cajca.ICPL87119.gnm2.ann1.L3ZH.busco.fabales_odb10.short_summary.txt -d9b7f9a365ae6579106a0b11bb7aecc0 ./BUSCO/cajca.ICPL87119.gnm2.ann1.L3ZH.busco.fabales_odb10.full_table.tsv.gz -c7e892f2c2ad01d6fb7f79f5fad524d1 ./BUSCO/cajca.ICPL87119.gnm2.ann1.L3ZH.busco.fabales_odb10.short_summary.json -320d71d2e173c804b8dc3a312d0bbccd ./cajca.ICPL87119.gnm2.ann1.L3ZH.mrna_primary.fna.gz.gzi -506f80f0789703001d34a04cec318531 ./cajca.ICPL87119.gnm2.ann1.L3ZH.gene_models_main.gff3.gz.tbi -ba929e90f14cab3939e6e7521749f811 ./cajca.ICPL87119.gnm2.ann1.L3ZH.protein.faa.gz.gzi -c59d6f00f3c3611822a12c53be0f8fb3 ./cajca.ICPL87119.gnm2.ann1.L3ZH.protein.faa.gz -d2b3ae47123e0d59314d42acfb725322 ./cajca.ICPL87119.gnm2.ann1.L3ZH.cds.fna.gz.gzi +eb479c07b70abdb9946801d302663fd1 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.cds_primary.fna.gz +dfb8dbc2dda1833e9393b5df661528b0 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.cds_primary.fna.gz.fai +5d2a0fdd6c8bec50e6b25c8549d278c1 Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.cds_primary.fna.gz.gzi +11f37627e0271cf5925594f81260bdda Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.cds.fna.gz +b8dc7d53b5618b7e7d2266e64a8f431d Cajanus/cajan/annotations/ICPL87119.gnm2.ann1.L3ZH/cajca.ICPL87119.gnm2.ann1.L3ZH.cds.fna.gz.fai +d2b3ae47123e0d59314d42acfb725322 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Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.legfed_v1_0.M65K.gfa.tsv.gz +7bf8f8b82687aa164514ac5d14c4f134 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.mrna_primary.fna.gz +c95d5d40902d28b6a7d2e5af3c9249d1 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.mrna_primary.fna.gz.fai +700a6556b453247ba254aad42fd7f6b6 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.mrna_primary.fna.gz.gzi +7fdeff103145a673ad5c9760338259bd Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.mrna.fna.gz +e70a34aca8168672d228e1d884f2c6c7 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.mrna.fna.gz.fai +e5417bfa569ced6cad9da2d9fe645f22 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.mrna.fna.gz.gzi +22237aebda7ccd37c94ff55a43f8d1f5 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.original_readme.txt +19f374f492470435326df3b77e712e46 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.protein_primary.faa.gz +fe0adae590e3a697c0708ab839894592 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.protein_primary.faa.gz.fai +2fd7229bd5e32bb098f2d56f5ebf4308 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.protein_primary.faa.gz.gzi +e8513f806620857412b2ebe0c3823af2 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.protein.faa.gz +c19ff7d2ead9a9b70b8da35eb3001386 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.protein.faa.gz.fai +28396b90df64f5d21b64e4d41d95729a Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.protein.faa.gz.gzi +76fcd6f365f14c429df813a95d02e6ad Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/cerca.ISC453364.gnm3.ann1.3N1M.repeatmasked_assembly.gff3.gz +6b6a56ae2bc8c1e5815ef822f744b0e5 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/CHANGES.ISC453364.gnm3.ann1.3N1M.txt +dc1b6e205fb2e890cf8178911b234140 Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/MANIFEST.ISC453364.gnm3.ann1.3N1M.correspondence.yml +73f361a776b662808cd4f85470115c7b Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/MANIFEST.ISC453364.gnm3.ann1.3N1M.descriptions.yml +fcfe396f0af2fddb2a5c052d97e4eb6f Cercis/canadensis/annotations/ISC453364.gnm3.ann1.3N1M/README.ISC453364.gnm3.ann1.3N1M.yml diff --git a/Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/CHECKSUM.CDCFrontier.gnm1.ann1.nRhs.md5 b/Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/CHECKSUM.CDCFrontier.gnm1.ann1.nRhs.md5 index b313a131..4aa8a849 100644 --- a/Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/CHECKSUM.CDCFrontier.gnm1.ann1.nRhs.md5 +++ b/Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/CHECKSUM.CDCFrontier.gnm1.ann1.nRhs.md5 @@ -1,36 +1,32 @@ -93903710e628ff27979c728cd6bc952e ./MANIFEST.CDCFrontier.gnm1.ann1.nRhs.correspondence.yml -9f5441190c13bba2a8ded3c41cc84ae2 ./cicar.CDCFrontier.gnm1.ann1.nRhs.info_annot_TrEMBL.txt.gz -10ce6b0e8b992ff2a504b497fe878dbb ./cicar.CDCFrontier.gnm1.ann1.nRhs.mrna.fna.gz.fai -b3c5eb60843050a1f9a6de42767c1faf ./CHANGES.CDCFrontier.gnm1.ann1.nRhs.txt -572dd0682515723dfe858d1ba6f3d8b9 ./MANIFEST.CDCFrontier.gnm1.ann1.nRhs.descriptions.yml -f29539492d1feeb6341be887879cff7d ./cicar.CDCFrontier.gnm1.ann1.nRhs.cds.fna.gz -d098077ee468b5edff98012534383c89 ./cicar.CDCFrontier.gnm1.ann1.nRhs.cds.fna.gz.fai -362d140b23c36aa67f16e0f15b9f9e52 ./cicar.CDCFrontier.gnm1.ann1.nRhs.annot_snRNA.gff.gz -82fe7ce144e92dcba6db4d60f35eaf4c ./BUSCO/cicar.CDCFrontier.gnm1.ann1.nRhs.busco.fabales_odb10.short_summary.json -295f3e8d03e76768061ed632c177d261 ./BUSCO/cicar.CDCFrontier.gnm1.ann1.nRhs.busco.fabales_odb10.full_table.tsv.gz -8a2a2cede83c8cfc012f6a8d2d98ae54 ./BUSCO/cicar.CDCFrontier.gnm1.ann1.nRhs.busco.fabales_odb10.short_summary.txt -0f0a069f1c6041803309f7bec10de561 ./cicar.CDCFrontier.gnm1.ann1.nRhs.gene_models_main.gff3.gz -24f546effef2da020a7b9b42746dbcf4 ./cicar.CDCFrontier.gnm1.ann1.nRhs.repeat_models_trf.gff.gz -685384a457e0035447fbbc91b3bf438e ./cicar.CDCFrontier.gnm1.ann1.nRhs.protein.faa.gz.gzi -e13195eeba01a9a4268cb9122306a69d ./cicar.CDCFrontier.gnm1.ann1.nRhs.info_annot_Swissprot.txt.gz -4517d2e167dc8c9a2314a53e3d469f33 ./cicar.CDCFrontier.gnm1.ann1.nRhs.info_annot_GO.txt.gz -b4e4572104b6152e757130594cb33795 ./cicar.CDCFrontier.gnm1.ann1.nRhs.repeat_models_denovo.gff.gz -618dcdb75ae518d2b6f219d15ac538cd ./cicar.CDCFrontier.gnm1.ann1.nRhs.mrna.fna.gz -a1a13844ebb4baf328d6e32da9caa742 ./cicar.CDCFrontier.gnm1.ann1.nRhs.info_annot_InterPro.txt.gz -2c79c1cf30599d575ded4e6f01af55b5 ./README.CDCFrontier.gnm1.ann1.nRhs.yml -a5df54c1e712b3df32d784c16d3960c2 ./cicar.CDCFrontier.gnm1.ann1.nRhs.gene_models_GLEAN.gff.gz -03126e420495ce2e9a043f14786263bd ./cicar.CDCFrontier.gnm1.ann1.nRhs.annot_miRNA.gff.gz -6e873a762ccc45cc1aae034fa8137fb1 ./cicar.CDCFrontier.gnm1.ann1.nRhs.cds.bed.gz.tbi -fc733fe3eec5bfb6afec2fb5dce3ac0c ./cicar.CDCFrontier.gnm1.ann1.nRhs.repeat_models_repeatmasker.gff.gz -6ea2b0b4bea34d4fed49c74130691d29 ./cicar.CDCFrontier.gnm1.ann1.nRhs.annot_rRNA.gff.gz -add9afa9f528bc156c16ec72ae5bd3d3 ./cicar.CDCFrontier.gnm1.ann1.nRhs.protein.faa.gz.fai -efecfceed17e8fa79b678948233ad0ff ./cicar.CDCFrontier.gnm1.ann1.nRhs.annot_tRNA.gff.gz -7df166cd08abda8fd6553000f7fdc8a6 ./cicar.CDCFrontier.gnm1.ann1.nRhs.gene_models_main.gff3.gz.tbi -be5a908e6b5aa0af6c6da9aef1bf9f62 ./cicar.CDCFrontier.gnm1.ann1.nRhs.protein.faa.gz -502ff438740a3da449a74fff366d80f6 ./cicar.CDCFrontier.gnm1.ann1.nRhs.repeat_models_proteinmask.gff.gz -6f0c62b5a79f2dacca59094da267d43d ./cicar.CDCFrontier.gnm1.ann1.nRhs.cds.fna.gz.gzi -59fdc437b1354ab4be6913faa48aee73 ./cicar.CDCFrontier.gnm1.ann1.nRhs.legfed_v1_0.M65K.gfa.tsv.gz -d7dd027170fc9744cfab72c7474ada63 ./cicar.CDCFrontier.gnm1.ann1.nRhs.mrna.fna.gz.gzi -e2b3e365aedaa8e2d6a9b5e2e86b8fcc ./busco/cicar.CDCFrontier.gnm1.ann1.nRhs.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.cicar.CDCFrontier.gnm1.ann1.nRhs.protein.faa.gz_busco.txt -8891f7f755a2b6734637fab207b6dc3c ./cicar.CDCFrontier.gnm1.ann1.nRhs.cds.bed.gz -04697682b7d4eb695a2487a33338c5fb ./cicar.CDCFrontier.gnm1.ann1.nRhs.info_annot_KEGG.txt.gz +b3c5eb60843050a1f9a6de42767c1faf Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/CHANGES.CDCFrontier.gnm1.ann1.nRhs.txt +03126e420495ce2e9a043f14786263bd Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.annot_miRNA.gff.gz +6ea2b0b4bea34d4fed49c74130691d29 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.annot_rRNA.gff.gz +362d140b23c36aa67f16e0f15b9f9e52 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.annot_snRNA.gff.gz +efecfceed17e8fa79b678948233ad0ff Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.annot_tRNA.gff.gz +f29539492d1feeb6341be887879cff7d Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.cds.fna.gz +d098077ee468b5edff98012534383c89 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.cds.fna.gz.fai +6f0c62b5a79f2dacca59094da267d43d Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.cds.fna.gz.gzi +a5df54c1e712b3df32d784c16d3960c2 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.gene_models_GLEAN.gff.gz +b8b542e7e5b231514d031fbd85fe5f24 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.gene_models_main.bed.gz +2d76ceb5c0e2b38ed0881f96d061c01f Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.gene_models_main.bed.gz.tbi +0f0a069f1c6041803309f7bec10de561 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.gene_models_main.gff3.gz +7df166cd08abda8fd6553000f7fdc8a6 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.gene_models_main.gff3.gz.tbi +4517d2e167dc8c9a2314a53e3d469f33 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.info_annot_GO.txt.gz +a1a13844ebb4baf328d6e32da9caa742 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.info_annot_InterPro.txt.gz +04697682b7d4eb695a2487a33338c5fb Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.info_annot_KEGG.txt.gz +e13195eeba01a9a4268cb9122306a69d Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.info_annot_Swissprot.txt.gz +9f5441190c13bba2a8ded3c41cc84ae2 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.info_annot_TrEMBL.txt.gz +59fdc437b1354ab4be6913faa48aee73 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.legfed_v1_0.M65K.gfa.tsv.gz +618dcdb75ae518d2b6f219d15ac538cd Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.mrna.fna.gz +10ce6b0e8b992ff2a504b497fe878dbb Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.mrna.fna.gz.fai +d7dd027170fc9744cfab72c7474ada63 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.mrna.fna.gz.gzi +be5a908e6b5aa0af6c6da9aef1bf9f62 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.protein.faa.gz +add9afa9f528bc156c16ec72ae5bd3d3 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.protein.faa.gz.fai +685384a457e0035447fbbc91b3bf438e Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.protein.faa.gz.gzi +b4e4572104b6152e757130594cb33795 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.repeat_models_denovo.gff.gz +502ff438740a3da449a74fff366d80f6 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.repeat_models_proteinmask.gff.gz +fc733fe3eec5bfb6afec2fb5dce3ac0c Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.repeat_models_repeatmasker.gff.gz +24f546effef2da020a7b9b42746dbcf4 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/cicar.CDCFrontier.gnm1.ann1.nRhs.repeat_models_trf.gff.gz +93903710e628ff27979c728cd6bc952e Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/MANIFEST.CDCFrontier.gnm1.ann1.nRhs.correspondence.yml +572dd0682515723dfe858d1ba6f3d8b9 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/MANIFEST.CDCFrontier.gnm1.ann1.nRhs.descriptions.yml +2c79c1cf30599d575ded4e6f01af55b5 Cicer/arietinum/annotations/CDCFrontier.gnm1.ann1.nRhs/README.CDCFrontier.gnm1.ann1.nRhs.yml diff --git a/Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/CHECKSUM.CDCFrontier.gnm2.ann1.9M1L.md5 b/Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/CHECKSUM.CDCFrontier.gnm2.ann1.9M1L.md5 index 7e820cc6..ad8fa952 100644 --- a/Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/CHECKSUM.CDCFrontier.gnm2.ann1.9M1L.md5 +++ b/Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/CHECKSUM.CDCFrontier.gnm2.ann1.9M1L.md5 @@ -1,32 +1,29 @@ -72da125c28d7f24a3b4ed255b0cb1a3f ./cicar.CDCFrontier.gnm2.ann1.9M1L.cds.bed.gz -d902c47684926bfc6833ba10a956bff7 ./cicar.CDCFrontier.gnm2.ann1.9M1L.mrna_primary.fna.gz.fai -06c8601cdd22b3a8a2182371ba892f4b ./BUSCO/cicar.CDCFrontier.gnm2.ann1.9M1L.busco.fabales_odb10.full_table.tsv.gz -9023067d676c00296fb195b0246e970c ./BUSCO/cicar.CDCFrontier.gnm2.ann1.9M1L.busco.fabales_odb10.short_summary.json -41513867d845e799b588e419cccd1e84 ./BUSCO/cicar.CDCFrontier.gnm2.ann1.9M1L.busco.fabales_odb10.short_summary.txt -dc628cc8fffef1a1f9079104a0bd9722 ./cicar.CDCFrontier.gnm2.ann1.9M1L.protein_primary.faa.gz.fai -dde601defe9d7b8be99a7a69f974aa62 ./README.CDCFrontier.gnm2.ann1.9M1L.yml -9734814bdd0694d67bccf78c8653799b ./cicar.CDCFrontier.gnm2.ann1.9M1L.protein.faa.gz.gzi -e47dd18d9607743f63e3ab399a428c0b ./cicar.CDCFrontier.gnm2.ann1.9M1L.cds_primary.fna.gz.fai -bec92c0e92977381c83feca0d90b1918 ./cicar.CDCFrontier.gnm2.ann1.9M1L.gene_models_main.gff3.gz.tbi -f6b7efa8ed6477947caae798528cad89 ./cicar.CDCFrontier.gnm2.ann1.9M1L.mrna_primary.fna.gz -f88b9b13da3f8ebc4cda173f5cc14ebd ./cicar.CDCFrontier.gnm2.ann1.9M1L.legfed_v1_0.M65K.gfa.tsv.gz -413de6a8f22697e7deb7537e5de9c279 ./cicar.CDCFrontier.gnm2.ann1.9M1L.cds.fna.gz.fai -e35e7006a3a9890ede6e26f6c57ab991 ./cicar.CDCFrontier.gnm2.ann1.9M1L.mrna.fna.gz.gzi -c9d70701f6fc4246c7d8cf84f01c8297 ./CHANGES.CDCFrontier.gnm2.ann1.9M1L.txt -56522ccdbd33543e4b58009e58ce63d5 ./MANIFEST.CDCFrontier.gnm2.ann1.9M1L.corresponding.yml -ad5e4eded4f4fedca245bdb7a79ead74 ./cicar.CDCFrontier.gnm2.ann1.9M1L.cds_primary.fna.gz -82244209dfceb45d4e732cc7eed548a8 ./cicar.CDCFrontier.gnm2.ann1.9M1L.mrna.fna.gz -b0ada569c3efc209bf65cb0667d4cac9 ./cicar.CDCFrontier.gnm2.ann1.9M1L.mrna.fna.gz.fai -c5188452ed86b2573f985f5e318bf122 ./cicar.CDCFrontier.gnm2.ann1.9M1L.protein.faa.gz -da3760aa9364ca41de6100d4205fbe87 ./MANIFEST.CDCFrontier.gnm2.ann1.9M1L.descriptions.yml -59d34769f24d77af473da6b72be95b58 ./cicar.CDCFrontier.gnm2.ann1.9M1L.cds.fna.gz.gzi -3444a695dd0b5bef4568009b1417ffe2 ./cicar.CDCFrontier.gnm2.ann1.9M1L.cds_primary.fna.gz.gzi -7dbed67e6878fb0939f680d9ac1bfdd3 ./cicar.CDCFrontier.gnm2.ann1.9M1L.gene_models_main.gff3.gz -7f25e0c34cb3c32fa645d4c1e6d347b0 ./cicar.CDCFrontier.gnm2.ann1.9M1L.cds.fna.gz -9cdd6e1bc5a99873207abcd571105801 ./cicar.CDCFrontier.gnm2.ann1.9M1L.protein_primary.faa.gz -e80f65752b79d9467b2d142a4512a15d ./cicar.CDCFrontier.gnm2.ann1.9M1L.protein_primary.faa.gz.gzi -a7cd47f0abc2ec1d13c4bea23c8eac81 ./cicar.CDCFrontier.gnm2.ann1.9M1L.protein.faa.gz.fai -af97f51509a600a954453c81587bead9 ./cicar.CDCFrontier.gnm2.ann1.9M1L.iprscan.gff3.gz -a383d557000c470b45378ab0ebf91acd ./cicar.CDCFrontier.gnm2.ann1.9M1L.mrna_primary.fna.gz.gzi -69b543f2e41de8c07c83d30adb1804e8 ./cicar.CDCFrontier.gnm2.ann1.9M1L.iprscan.gff3.gz.tbi -ae443e1b0b14dd6b296f73a1e677a735 ./cicar.CDCFrontier.gnm2.ann1.9M1L.cds.bed.gz.tbi +c9d70701f6fc4246c7d8cf84f01c8297 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/CHANGES.CDCFrontier.gnm2.ann1.9M1L.txt +ad5e4eded4f4fedca245bdb7a79ead74 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.cds_primary.fna.gz +e47dd18d9607743f63e3ab399a428c0b Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.cds_primary.fna.gz.fai +3444a695dd0b5bef4568009b1417ffe2 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.cds_primary.fna.gz.gzi +7f25e0c34cb3c32fa645d4c1e6d347b0 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.cds.fna.gz +413de6a8f22697e7deb7537e5de9c279 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.cds.fna.gz.fai +59d34769f24d77af473da6b72be95b58 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.cds.fna.gz.gzi +dc9ab96078e60ad07e3d86349e629d5d Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.gene_models_main.bed.gz +fd29358a783f962c8ff0b4e0100f3227 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.gene_models_main.bed.gz.tbi +7dbed67e6878fb0939f680d9ac1bfdd3 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.gene_models_main.gff3.gz +bec92c0e92977381c83feca0d90b1918 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.gene_models_main.gff3.gz.tbi +af97f51509a600a954453c81587bead9 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.iprscan.gff3.gz +69b543f2e41de8c07c83d30adb1804e8 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.iprscan.gff3.gz.tbi +f88b9b13da3f8ebc4cda173f5cc14ebd Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.legfed_v1_0.M65K.gfa.tsv.gz +f6b7efa8ed6477947caae798528cad89 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.mrna_primary.fna.gz +d902c47684926bfc6833ba10a956bff7 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.mrna_primary.fna.gz.fai +a383d557000c470b45378ab0ebf91acd Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.mrna_primary.fna.gz.gzi +82244209dfceb45d4e732cc7eed548a8 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.mrna.fna.gz +b0ada569c3efc209bf65cb0667d4cac9 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.mrna.fna.gz.fai +e35e7006a3a9890ede6e26f6c57ab991 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.mrna.fna.gz.gzi +9cdd6e1bc5a99873207abcd571105801 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.protein_primary.faa.gz +dc628cc8fffef1a1f9079104a0bd9722 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.protein_primary.faa.gz.fai +e80f65752b79d9467b2d142a4512a15d Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.protein_primary.faa.gz.gzi +c5188452ed86b2573f985f5e318bf122 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.protein.faa.gz +a7cd47f0abc2ec1d13c4bea23c8eac81 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.protein.faa.gz.fai +9734814bdd0694d67bccf78c8653799b Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/cicar.CDCFrontier.gnm2.ann1.9M1L.protein.faa.gz.gzi +56522ccdbd33543e4b58009e58ce63d5 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/MANIFEST.CDCFrontier.gnm2.ann1.9M1L.corresponding.yml +da3760aa9364ca41de6100d4205fbe87 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/MANIFEST.CDCFrontier.gnm2.ann1.9M1L.descriptions.yml +dde601defe9d7b8be99a7a69f974aa62 Cicer/arietinum/annotations/CDCFrontier.gnm2.ann1.9M1L/README.CDCFrontier.gnm2.ann1.9M1L.yml diff --git a/Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/CHECKSUM.CDCFrontier.gnm3.ann1.NPD7.md5 b/Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/CHECKSUM.CDCFrontier.gnm3.ann1.NPD7.md5 index 62de7bfd..7f6020c5 100644 --- a/Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/CHECKSUM.CDCFrontier.gnm3.ann1.NPD7.md5 +++ b/Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/CHECKSUM.CDCFrontier.gnm3.ann1.NPD7.md5 @@ -1,13 +1,10 @@ -9100af4466210c32281353469f776069 ./cicar.CDCFrontier.gnm3.ann1.NPD7.cds.fna.gz -35e0c3412515c2af6dadd1c7c14efd5e ./cicar.CDCFrontier.gnm3.ann1.NPD7.gene_models_main.gff3.gz -90d4448bba39fb50c28e64dcd7aca9a0 ./cicar.CDCFrontier.gnm3.ann1.NPD7.gene_models_main.gff3.gz.tbi -cd0cd2ebfeba764d47207706a81c88e8 ./cicar.CDCFrontier.gnm3.ann1.NPD7.legfed_v1_0.M65K.gfa.tsv.gz -b1a5382550a1ebc29ab0d28e3a8adb7d ./cicar.CDCFrontier.gnm3.ann1.NPD7.mrna.fna.gz -020825cab2e68d11d30eba9fa0ebffac ./BUSCO/cicar.CDCFrontier.gnm3.ann1.NPD7.busco.fabales_odb10.short_summary.txt -de5459ed8790b0c1e15ef9c5db82c461 ./BUSCO/cicar.CDCFrontier.gnm3.ann1.NPD7.busco.fabales_odb10.full_table.tsv.gz -b08ec7419295408e40f8aa6be9a51561 ./BUSCO/cicar.CDCFrontier.gnm3.ann1.NPD7.busco.fabales_odb10.short_summary.json -c6d746d74eea7c10ca5af502edab2983 ./README.CDCFrontier.gnm3.ann1.NPD7.yml -137fef4aacb2c136160cc83e5344cbee ./cicar.CDCFrontier.gnm3.ann1.NPD7.protein.faa.gz -58ffeeb38ab31d993c5db12325605acd ./cicar.CDCFrontier.gnm3.ann1.NPD7.cds.bed.gz -c337fb92d54e0ce9727e8b0b672344fd ./cicar.CDCFrontier.gnm3.ann1.NPD7.gcv_genes.gff3.gz -15e8f8dba6d5bed8366529094f12106f ./cicar.CDCFrontier.gnm3.ann1.NPD7.cds.bed.gz.tbi +9100af4466210c32281353469f776069 Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.cds.fna.gz +c337fb92d54e0ce9727e8b0b672344fd Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.gcv_genes.gff3.gz +c07032da95e3671ccfed2508e89174a5 Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.gene_models_main.bed.gz +e5713c8d768bc216efe8bd0ef63a8e2c Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.gene_models_main.bed.gz.tbi +35e0c3412515c2af6dadd1c7c14efd5e Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.gene_models_main.gff3.gz +90d4448bba39fb50c28e64dcd7aca9a0 Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.gene_models_main.gff3.gz.tbi +cd0cd2ebfeba764d47207706a81c88e8 Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.legfed_v1_0.M65K.gfa.tsv.gz +b1a5382550a1ebc29ab0d28e3a8adb7d Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.mrna.fna.gz +137fef4aacb2c136160cc83e5344cbee Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/cicar.CDCFrontier.gnm3.ann1.NPD7.protein.faa.gz +c6d746d74eea7c10ca5af502edab2983 Cicer/arietinum/annotations/CDCFrontier.gnm3.ann1.NPD7/README.CDCFrontier.gnm3.ann1.NPD7.yml diff --git a/Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/CHECKSUM.ICC4958.gnm2.ann1.LCVX.md5 b/Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/CHECKSUM.ICC4958.gnm2.ann1.LCVX.md5 index e1e6300d..1e643673 100644 --- a/Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/CHECKSUM.ICC4958.gnm2.ann1.LCVX.md5 +++ b/Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/CHECKSUM.ICC4958.gnm2.ann1.LCVX.md5 @@ -1,34 +1,29 @@ -c7f2134f023ad53095d0d0ee03f266c2 ./cicar.ICC4958.gnm2.ann1.LCVX.mrna_primary.fna.gz -310b4a52575c278ef2c7cee799ca742d ./cicar.ICC4958.gnm2.ann1.LCVX.mrna_primary.fna.gz.fai -e738288eced6afca8652ba5d34a984f4 ./cicar.ICC4958.gnm2.ann1.LCVX.protein.faa.gz.fai -1059b3d702d19f94ae82d5e1a4dff2e1 ./cicar.ICC4958.gnm2.ann1.LCVX.gene_models_main.gff3.gz -5e5291ac45d736251924ea7b3bd4cf1b ./cicar.ICC4958.gnm2.ann1.LCVX.protein.faa.gz -007480cb576b2b3714be9d3769db698d ./cicar.ICC4958.gnm2.ann1.LCVX.cds.bed.gz -917122fd1d77e1c4559c2be476e28e08 ./cicar.ICC4958.gnm2.ann1.LCVX.cds.fna.gz.gzi -e7635ea840d73f7032adc81e340222eb ./cicar.ICC4958.gnm2.ann1.LCVX.mrna.fna.gz.fai -0c3396354a6064a96c30417c3c9b2cfb ./cicar.ICC4958.gnm2.ann1.LCVX.gene_models_main.gff3.gz.tbi -8397d99871fc4d957400ef297234e571 ./MANIFEST.ICC4958.gnm2.ann1.LCVX.correspondence.yml -02b13c709228b2dab49a93fb4740cae3 ./cicar.ICC4958.gnm2.ann1.LCVX.protein_primary.faa.gz.gzi -06f25fbb4b1058b356e8523216c827a9 ./cicar.ICC4958.gnm2.ann1.LCVX.legfed_v1_0.M65K.gfa.tsv.gz -003b27ceb1d757085631b9e4fca02043 ./cicar.ICC4958.gnm2.ann1.LCVX.cds_primary.fna.gz -b457c6589ea80e419f81dd0f7c02fa99 ./BUSCO/cicar.ICC4958.gnm2.ann1.LCVX.busco.fabales_odb10.short_summary.json -e37ba66d8885af558ea3936dc7a2c7b7 ./BUSCO/cicar.ICC4958.gnm2.ann1.LCVX.busco.fabales_odb10.full_table.tsv.gz -98ccdb5db3895e46de718d15903ecb47 ./BUSCO/cicar.ICC4958.gnm2.ann1.LCVX.busco.fabales_odb10.short_summary.txt -853fa4d63f81152f9c2dd1a4dfc0b150 ./cicar.ICC4958.gnm2.ann1.LCVX.mrna.fna.gz -eb3d053a91dd8dc161c8382dcae8ec4d ./CHANGES.ICC4958.gnm2.ann1.LCVX.txt -2299feec3a606e4c134d3d179f044c96 ./cicar.ICC4958.gnm2.ann1.LCVX.cds.bed.gz.tbi -37093b7563ec174280f01166e5667afd ./cicar.ICC4958.gnm2.ann1.LCVX.cds_primary.fna.gz.fai -d719e20f375fd72ae08f6be1f4a394aa ./cicar.ICC4958.gnm2.ann1.LCVX.gene_function.gff3.gz.tbi -7732d8fba51f518f2d09e41e728edefa ./cicar.ICC4958.gnm2.ann1.LCVX.cds_primary.fna.gz.gzi -0aa9a1a446dc4e820295175731bcdc49 ./cicar.ICC4958.gnm2.ann1.LCVX.protein_primary.faa.gz -bb5e406de58d38322096c2b8ce1245c9 ./busco/cicar.ICC4958.gnm2.ann1.LCVX.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.cicar.ICC4958.gnm2.ann1.LCVX.protein.faa.gz_busco.txt -64dd28a0e0c5130d54eee48a4c26cd9c ./busco/cicar.ICC4958.gnm2.ann1.LCVX.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.cicar.ICC4958.gnm2.ann1.LCVX.protein_primaryTranscript.faa.gz_busco.txt -fbc5cf55abb6de4bc1bb9e0c4b3d3e8f ./cicar.ICC4958.gnm2.ann1.LCVX.protein_primary.faa.gz.fai -03d4efab5d416e52f133802f3d90ca07 ./cicar.ICC4958.gnm2.ann1.LCVX.cds.fna.gz.fai -6c68976d89e428e32fb105fda0cac7b2 ./cicar.ICC4958.gnm2.ann1.LCVX.mrna.fna.gz.gzi -14f916bb8ce0dd0f8e36fbd0b1dd416d ./MANIFEST.ICC4958.gnm2.ann1.LCVX.descriptions.yml -2b546023da29fb3611e606a6d8aca83a ./cicar.ICC4958.gnm2.ann1.LCVX.gene_function.gff3.gz -58febddb88c013fa981715bdaa918ad4 ./cicar.ICC4958.gnm2.ann1.LCVX.cds.fna.gz -8f5a90a9c916632637f6e6ade44882cc ./cicar.ICC4958.gnm2.ann1.LCVX.mrna_primary.fna.gz.gzi -565b95dd9e9459591e24117b9b319396 ./README.ICC4958.gnm2.ann1.LCVX.yml -1241e1d85d1a95352d2ff6078ec9cd7a ./cicar.ICC4958.gnm2.ann1.LCVX.protein.faa.gz.gzi +eb3d053a91dd8dc161c8382dcae8ec4d Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/CHANGES.ICC4958.gnm2.ann1.LCVX.txt +003b27ceb1d757085631b9e4fca02043 Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.cds_primary.fna.gz +37093b7563ec174280f01166e5667afd Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.cds_primary.fna.gz.fai +7732d8fba51f518f2d09e41e728edefa Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.cds_primary.fna.gz.gzi +58febddb88c013fa981715bdaa918ad4 Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.cds.fna.gz +03d4efab5d416e52f133802f3d90ca07 Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.cds.fna.gz.fai +917122fd1d77e1c4559c2be476e28e08 Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.cds.fna.gz.gzi +2b546023da29fb3611e606a6d8aca83a Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.gene_function.gff3.gz +d719e20f375fd72ae08f6be1f4a394aa Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.gene_function.gff3.gz.tbi +2c4756918bf79bbd588d38c75ef766a5 Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.gene_models_main.bed.gz +defb84a27c6b81bc254f29fd43af4f0e Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.gene_models_main.bed.gz.tbi +1059b3d702d19f94ae82d5e1a4dff2e1 Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.gene_models_main.gff3.gz +0c3396354a6064a96c30417c3c9b2cfb Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.gene_models_main.gff3.gz.tbi +06f25fbb4b1058b356e8523216c827a9 Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.legfed_v1_0.M65K.gfa.tsv.gz +c7f2134f023ad53095d0d0ee03f266c2 Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.mrna_primary.fna.gz +310b4a52575c278ef2c7cee799ca742d Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.mrna_primary.fna.gz.fai +8f5a90a9c916632637f6e6ade44882cc Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.mrna_primary.fna.gz.gzi +853fa4d63f81152f9c2dd1a4dfc0b150 Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.mrna.fna.gz +e7635ea840d73f7032adc81e340222eb Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.mrna.fna.gz.fai +6c68976d89e428e32fb105fda0cac7b2 Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.mrna.fna.gz.gzi +0aa9a1a446dc4e820295175731bcdc49 Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.protein_primary.faa.gz +fbc5cf55abb6de4bc1bb9e0c4b3d3e8f Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.protein_primary.faa.gz.fai +02b13c709228b2dab49a93fb4740cae3 Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.protein_primary.faa.gz.gzi +5e5291ac45d736251924ea7b3bd4cf1b Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.protein.faa.gz +e738288eced6afca8652ba5d34a984f4 Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.protein.faa.gz.fai +1241e1d85d1a95352d2ff6078ec9cd7a Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/cicar.ICC4958.gnm2.ann1.LCVX.protein.faa.gz.gzi +8397d99871fc4d957400ef297234e571 Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/MANIFEST.ICC4958.gnm2.ann1.LCVX.correspondence.yml +14f916bb8ce0dd0f8e36fbd0b1dd416d Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/MANIFEST.ICC4958.gnm2.ann1.LCVX.descriptions.yml +565b95dd9e9459591e24117b9b319396 Cicer/arietinum/annotations/ICC4958.gnm2.ann1.LCVX/README.ICC4958.gnm2.ann1.LCVX.yml diff --git a/Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/CHECKSUM.S2Drd065.gnm1.ann1.YZ9H.md5 b/Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/CHECKSUM.S2Drd065.gnm1.ann1.YZ9H.md5 index a094924c..e1250082 100644 --- a/Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/CHECKSUM.S2Drd065.gnm1.ann1.YZ9H.md5 +++ b/Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/CHECKSUM.S2Drd065.gnm1.ann1.YZ9H.md5 @@ -1,13 +1,10 @@ -49eeaf6c58777d736d41f8d2278d553a ./cicec.S2Drd065.gnm1.ann1.YZ9H.protein.faa.gz -cfa664937021b5010bdaec1bb3fe3ea5 ./cicec.S2Drd065.gnm1.ann1.YZ9H.gene_models_main.gff3.gz -c40adec554e8971d222a6006fa8a9c9e ./BUSCO/cicec.S2Drd065.gnm1.ann1.YZ9H.busco.fabales_odb10.short_summary.json -3c01c3158bf800dd22a82b3ebc35f0ff ./BUSCO/cicec.S2Drd065.gnm1.ann1.YZ9H.busco.fabales_odb10.short_summary.txt -cd0640064e63039130ce5c4068d6f0ee ./BUSCO/cicec.S2Drd065.gnm1.ann1.YZ9H.busco.fabales_odb10.full_table.tsv.gz -b1dcd8505f6e5d5e9c491d0e36845fc5 ./cicec.S2Drd065.gnm1.ann1.YZ9H.cds.bed.gz -5fd50403e8916847b1e894a1fadb0612 ./cicec.S2Drd065.gnm1.ann1.YZ9H.cds.bed.gz.tbi -a07c494f81368f183c65cb3f9db7eb34 ./cicec.S2Drd065.gnm1.ann1.YZ9H.gcv_genes.gff3.gz -da96c9438b7102fd483dc3db9d970b9f ./cicec.S2Drd065.gnm1.ann1.YZ9H.cds.fna.gz -d48615baca68b7aa0c4428bf12981a5d ./README.S2Drd065.gnm1.ann1.YZ9H.yml -3201483857acb1a5e4a6ae18c08e3d5d ./cicec.S2Drd065.gnm1.ann1.YZ9H.mrna.fna.gz -4eda0ecd700cc246b92304898c6d8cb7 ./cicec.S2Drd065.gnm1.ann1.YZ9H.gene_models_main.gff3.gz.tbi -a7947b3f301c0e6090045d4d681044d1 ./cicec.S2Drd065.gnm1.ann1.YZ9H.legfed_v1_0.M65K.gfa.tsv.gz +da96c9438b7102fd483dc3db9d970b9f Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.cds.fna.gz +a07c494f81368f183c65cb3f9db7eb34 Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.gcv_genes.gff3.gz +38535dbad6e8038fad706c73813a65f6 Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.gene_models_main.bed.gz +c49bf01348e7ee9e64e4c4822f7978b9 Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.gene_models_main.bed.gz.tbi +cfa664937021b5010bdaec1bb3fe3ea5 Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.gene_models_main.gff3.gz +4eda0ecd700cc246b92304898c6d8cb7 Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.gene_models_main.gff3.gz.tbi +a7947b3f301c0e6090045d4d681044d1 Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.legfed_v1_0.M65K.gfa.tsv.gz +3201483857acb1a5e4a6ae18c08e3d5d Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.mrna.fna.gz +49eeaf6c58777d736d41f8d2278d553a Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/cicec.S2Drd065.gnm1.ann1.YZ9H.protein.faa.gz +d48615baca68b7aa0c4428bf12981a5d Cicer/echinospermum/annotations/S2Drd065.gnm1.ann1.YZ9H/README.S2Drd065.gnm1.ann1.YZ9H.yml diff --git a/Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/CHECKSUM.Besev079.gnm1.ann1.F01Z.md5 b/Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/CHECKSUM.Besev079.gnm1.ann1.F01Z.md5 index 0c9bedc5..9daa6c08 100644 --- a/Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/CHECKSUM.Besev079.gnm1.ann1.F01Z.md5 +++ b/Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/CHECKSUM.Besev079.gnm1.ann1.F01Z.md5 @@ -1,13 +1,10 @@ -06f8132d21234c50f48d1abc96e7cec7 ./README.Besev079.gnm1.ann1.F01Z.yml -70040246deafbe2f91e789a4ea9290d3 ./BUSCO/cicre.Besev079.gnm1.ann1.F01Z.busco.fabales_odb10.short_summary.json -af3e70fe8a98271612d29fe0d548cb65 ./BUSCO/cicre.Besev079.gnm1.ann1.F01Z.busco.fabales_odb10.short_summary.txt -6d1e6f16dcb8e088f807f3ebf956dc88 ./BUSCO/cicre.Besev079.gnm1.ann1.F01Z.busco.fabales_odb10.full_table.tsv.gz -8e5e83d18d93eaf02d45ee90db868115 ./cicre.Besev079.gnm1.ann1.F01Z.cds.bed.gz -ef94a230817d4dacfa70a8566533e134 ./cicre.Besev079.gnm1.ann1.F01Z.cds.bed.gz.tbi -d7e15efd2a0209f5d2a48696df68ed9d ./cicre.Besev079.gnm1.ann1.F01Z.protein.faa.gz -33cff98eb0f38b344e438b621a64d0f1 ./cicre.Besev079.gnm1.ann1.F01Z.legfed_v1_0.M65K.gfa.tsv.gz -e4a9ab68db1e07c798982f95a1bad369 ./cicre.Besev079.gnm1.ann1.F01Z.gcv_genes.gff3.gz -7a03c6f4ade0d8b517c153d6e11a2963 ./cicre.Besev079.gnm1.ann1.F01Z.gene_models_main.gff3.gz.tbi -0663a42dbb8368edb0527d235922ba95 ./cicre.Besev079.gnm1.ann1.F01Z.cds.fna.gz -a57e98a1a1fff2b460e437c4b64a1240 ./cicre.Besev079.gnm1.ann1.F01Z.mrna.fna.gz -d79d8406de728b09ef83d32f41735df8 ./cicre.Besev079.gnm1.ann1.F01Z.gene_models_main.gff3.gz +0663a42dbb8368edb0527d235922ba95 Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.cds.fna.gz +e4a9ab68db1e07c798982f95a1bad369 Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.gcv_genes.gff3.gz +c67ef0f1a935db911cab0c794ae439ba Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.gene_models_main.bed.gz +7bd73dd73fcb8144eaba6f89ec1858af Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.gene_models_main.bed.gz.tbi +d79d8406de728b09ef83d32f41735df8 Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.gene_models_main.gff3.gz +7a03c6f4ade0d8b517c153d6e11a2963 Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.gene_models_main.gff3.gz.tbi +33cff98eb0f38b344e438b621a64d0f1 Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.legfed_v1_0.M65K.gfa.tsv.gz +a57e98a1a1fff2b460e437c4b64a1240 Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.mrna.fna.gz +d7e15efd2a0209f5d2a48696df68ed9d Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/cicre.Besev079.gnm1.ann1.F01Z.protein.faa.gz +06f8132d21234c50f48d1abc96e7cec7 Cicer/reticulatum/annotations/Besev079.gnm1.ann1.F01Z/README.Besev079.gnm1.ann1.F01Z.yml diff --git a/Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/CHECKSUM.WAFC.gnm1.ann1.RTP9.md5 b/Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/CHECKSUM.WAFC.gnm1.ann1.RTP9.md5 index 49339717..ff9af509 100644 --- a/Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/CHECKSUM.WAFC.gnm1.ann1.RTP9.md5 +++ b/Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/CHECKSUM.WAFC.gnm1.ann1.RTP9.md5 @@ -1,19 +1,18 @@ -1cdcb6891506a5a8e08c20d7f6e9dfc9 ./faial.WAFC.gnm1.ann1.RTP9.mrna.fna.gz.fai -7bfca87e9404e2909b09ef60223ebcba ./MANIFEST.WAFC.gnm1.ann1.RTP9.correspondence.yml -1cdcb6891506a5a8e08c20d7f6e9dfc9 ./faial.WAFC.gnm1.ann1.RTP9.cds.fna.gz.fai -6d9debc7cdf3712670256a40a409e1c6 ./faial.WAFC.gnm1.ann1.RTP9.protein.faa.gz.fai -e1aa0bc3d3339cf8162605799ad03600 ./faial.WAFC.gnm1.ann1.RTP9.cds.bed.gz -c8def3356242867d939cffe7017ececf ./faial.WAFC.gnm1.ann1.RTP9.gene_models_main.gff3.gz.tbi -407c80813e58570a77bff50e7f037e37 ./busco/faial.WAFC.gnm1.ann1.RTP9.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.faihe.unk.gnm1.ann1.RTP9.protein.faa.gz_busco.txt -302aa21c4f18a9206298a1d3aafdb6a5 ./faial.WAFC.gnm1.ann1.RTP9.repeats.gff3.gz -344c5df587e6ffcabc9ed9c2c40878de ./README.WAFC.gnm1.ann1.RTP9.yml -8a279053012af96fc9b96c6186bc5ea1 ./MANIFEST.WAFC.gnm1.ann1.RTP9.descriptions.yml -d93926066a09574a4f17794f5cd9b315 ./faial.WAFC.gnm1.ann1.RTP9.cds.bed.gz.tbi -8b553b853bca60453a78cc56048fb978 ./faial.WAFC.gnm1.ann1.RTP9.mrna.fna.gz -3d1e46e9163c9311cc94d8bcfb19800b ./CHANGES.WAFC.gnm1.ann1.RTP9.txt -97592470f01462d9e292d63cbf0cc221 ./faial.WAFC.gnm1.ann1.RTP9.protein.faa.gz.gzi -218ac8f0527f81d4da4a71938f3cdb94 ./faial.WAFC.gnm1.ann1.RTP9.gene_models_main.gff3.gz -634c16e15a546b5a911f6edfb9f017fb ./faial.WAFC.gnm1.ann1.RTP9.protein.faa.gz -d4246a5df9dfa646821423e574f88b3c ./faial.WAFC.gnm1.ann1.RTP9.cds.fna.gz.gzi -8b553b853bca60453a78cc56048fb978 ./faial.WAFC.gnm1.ann1.RTP9.cds.fna.gz -d4246a5df9dfa646821423e574f88b3c ./faial.WAFC.gnm1.ann1.RTP9.mrna.fna.gz.gzi +3d1e46e9163c9311cc94d8bcfb19800b Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/CHANGES.WAFC.gnm1.ann1.RTP9.txt +8b553b853bca60453a78cc56048fb978 Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/faial.WAFC.gnm1.ann1.RTP9.cds.fna.gz +1cdcb6891506a5a8e08c20d7f6e9dfc9 Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/faial.WAFC.gnm1.ann1.RTP9.cds.fna.gz.fai +d4246a5df9dfa646821423e574f88b3c Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/faial.WAFC.gnm1.ann1.RTP9.cds.fna.gz.gzi +0a38a511be07e2f22cd0db2e790539af Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/faial.WAFC.gnm1.ann1.RTP9.gene_models_main.bed.gz +43cc7b0d4b3632a02e726d1e6efa68df Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/faial.WAFC.gnm1.ann1.RTP9.gene_models_main.bed.gz.tbi +218ac8f0527f81d4da4a71938f3cdb94 Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/faial.WAFC.gnm1.ann1.RTP9.gene_models_main.gff3.gz +c8def3356242867d939cffe7017ececf Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/faial.WAFC.gnm1.ann1.RTP9.gene_models_main.gff3.gz.tbi +8b553b853bca60453a78cc56048fb978 Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/faial.WAFC.gnm1.ann1.RTP9.mrna.fna.gz +1cdcb6891506a5a8e08c20d7f6e9dfc9 Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/faial.WAFC.gnm1.ann1.RTP9.mrna.fna.gz.fai +d4246a5df9dfa646821423e574f88b3c Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/faial.WAFC.gnm1.ann1.RTP9.mrna.fna.gz.gzi +634c16e15a546b5a911f6edfb9f017fb Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/faial.WAFC.gnm1.ann1.RTP9.protein.faa.gz +6d9debc7cdf3712670256a40a409e1c6 Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/faial.WAFC.gnm1.ann1.RTP9.protein.faa.gz.fai +97592470f01462d9e292d63cbf0cc221 Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/faial.WAFC.gnm1.ann1.RTP9.protein.faa.gz.gzi +302aa21c4f18a9206298a1d3aafdb6a5 Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/faial.WAFC.gnm1.ann1.RTP9.repeats.gff3.gz +7bfca87e9404e2909b09ef60223ebcba Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/MANIFEST.WAFC.gnm1.ann1.RTP9.correspondence.yml +8a279053012af96fc9b96c6186bc5ea1 Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/MANIFEST.WAFC.gnm1.ann1.RTP9.descriptions.yml +344c5df587e6ffcabc9ed9c2c40878de Faidherbia/albida/annotations/WAFC.gnm1.ann1.RTP9/README.WAFC.gnm1.ann1.RTP9.yml diff --git a/Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/CHECKSUM.G1403.gnm1.ann1.XNZQ.md5 b/Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/CHECKSUM.G1403.gnm1.ann1.XNZQ.md5 index e8e3b0fb..abeb82ee 100644 --- a/Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/CHECKSUM.G1403.gnm1.ann1.XNZQ.md5 +++ b/Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/CHECKSUM.G1403.gnm1.ann1.XNZQ.md5 @@ -1,23 +1,23 @@ -b4c683ed9ddc99cad64cce4b9e2e383d ./glyd3.G1403.gnm1.ann1.XNZQ.mrna.fna.gz.fai -63356de827b98f5dafd911eb25b5e077 ./glyd3.G1403.gnm1.ann1.XNZQ.gene_models_main.gff3.gz.gzi -6bdc0b5c2adb95399bbc4b0cb4ed2c12 ./glyd3.G1403.gnm1.ann1.XNZQ.gene_models_main.gff3.gz -413a1920efe4cd4fba4e154857a8c19c ./glyd3.G1403.gnm1.ann1.XNZQ.cds.fna.gz.fai -51bb02d56c13c5b073b67e9a45f0a1c2 ./glyd3.G1403.gnm1.ann1.XNZQ.protein.faa.gz.fai -5da320a3edb59f13970e0cb4e6c4e5a2 ./glyd3.G1403.gnm1.ann1.XNZQ.iprscan.gff3.gz -f9a9ea4421854d6af853f8916581c892 ./glyd3.G1403.gnm1.ann1.XNZQ.iprscan.gff3.gz.tbi -8c143e4351c94f70fe2f478c7cbb2cbf ./MANIFEST.G1403.gnm1.ann1.XNZQ.descriptions.yml -b4889740a8fe08a3d06d463f50eec159 ./glyd3.G1403.gnm1.ann1.XNZQ.gene_models_main.gff3.gz.tbi -f71cbaa87e3b91b04e32c75659559b1d ./glyd3.G1403.gnm1.ann1.XNZQ.gene_models_orig.gff.gz -7e6538d6f13948c27dfd0395e911eb62 ./glyd3.G1403.gnm1.ann1.XNZQ.cds.fna.gz.gzi -de20c7a0a82a315593c508089a5b543b ./glyd3.G1403.gnm1.ann1.XNZQ.protein.faa.gz.gzi -b3e33c7faedd30bd6e61dd0106f174c7 ./glyd3.G1403.gnm1.ann1.XNZQ.protein.faa.gz -a801c8087ce01d6c87656471b88e1e26 ./glyd3.G1403.gnm1.ann1.XNZQ.mrna.fna.gz -a8c6c9d30c009b2af087ce37f828e8cf ./MANIFEST.G1403.gnm1.ann1.XNZQ.correspondence.yml -0ea48b9b041f1b773e7f700b08fda891 ./glyd3.G1403.gnm1.ann1.XNZQ.iprscan.gff3.gz.gzi -80bbcf2cf244d3b97b28738c184b9470 ./glyd3.G1403.gnm1.ann1.XNZQ.gene_models_main.bed.gz -9f4d3e7e35c0a820a306ac07f759112b ./glyd3.G1403.gnm1.ann1.XNZQ.legfed_v1_0.M65K.gfa.tsv.gz -435671e2f5dbf8212b2834374ea62acb ./glyd3.G1403.gnm1.ann1.XNZQ.gene_models_main.bed.gz.tbi -2bdb6338b9d18e8413f48627acbe3c2c ./CHANGES.G1403.gnm1.XNZQ.txt -d4cb4de4b7dbd38f20a359e4dbcf097d ./glyd3.G1403.gnm1.ann1.XNZQ.mrna.fna.gz.gzi -2ba6bf4e57c4b0a21fc0f9742ee32461 ./README.G1403.gnm1.ann1.XNZQ.yml -5729432ca1b343d212e6199957dc8722 ./glyd3.G1403.gnm1.ann1.XNZQ.cds.fna.gz +2bdb6338b9d18e8413f48627acbe3c2c Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/CHANGES.G1403.gnm1.XNZQ.txt +5729432ca1b343d212e6199957dc8722 Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.cds.fna.gz +413a1920efe4cd4fba4e154857a8c19c Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.cds.fna.gz.fai +7e6538d6f13948c27dfd0395e911eb62 Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.cds.fna.gz.gzi +b611acb21b80a0bbe4c127b9c49cdf8a Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.gene_models_main.bed.gz +3c53833618fd9999bf09ade30cb247f4 Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.gene_models_main.bed.gz.tbi +6bdc0b5c2adb95399bbc4b0cb4ed2c12 Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.gene_models_main.gff3.gz +63356de827b98f5dafd911eb25b5e077 Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.gene_models_main.gff3.gz.gzi +b4889740a8fe08a3d06d463f50eec159 Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.gene_models_main.gff3.gz.tbi +f71cbaa87e3b91b04e32c75659559b1d Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.gene_models_orig.gff.gz +5da320a3edb59f13970e0cb4e6c4e5a2 Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.iprscan.gff3.gz +0ea48b9b041f1b773e7f700b08fda891 Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.iprscan.gff3.gz.gzi +f9a9ea4421854d6af853f8916581c892 Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.iprscan.gff3.gz.tbi +9f4d3e7e35c0a820a306ac07f759112b Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.legfed_v1_0.M65K.gfa.tsv.gz +a801c8087ce01d6c87656471b88e1e26 Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.mrna.fna.gz +b4c683ed9ddc99cad64cce4b9e2e383d Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.mrna.fna.gz.fai +d4cb4de4b7dbd38f20a359e4dbcf097d Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.mrna.fna.gz.gzi +b3e33c7faedd30bd6e61dd0106f174c7 Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.protein.faa.gz +51bb02d56c13c5b073b67e9a45f0a1c2 Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.protein.faa.gz.fai +de20c7a0a82a315593c508089a5b543b Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/glyd3.G1403.gnm1.ann1.XNZQ.protein.faa.gz.gzi +a8c6c9d30c009b2af087ce37f828e8cf Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/MANIFEST.G1403.gnm1.ann1.XNZQ.correspondence.yml +8c143e4351c94f70fe2f478c7cbb2cbf Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/MANIFEST.G1403.gnm1.ann1.XNZQ.descriptions.yml +2ba6bf4e57c4b0a21fc0f9742ee32461 Glycine/D3-tomentella/annotations/G1403.gnm1.ann1.XNZQ/README.G1403.gnm1.ann1.XNZQ.yml diff --git a/Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/CHECKSUM.G1267.gnm1.ann1.HRFD.md5 b/Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/CHECKSUM.G1267.gnm1.ann1.HRFD.md5 index 566d0a8e..8cc1c83f 100644 --- a/Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/CHECKSUM.G1267.gnm1.ann1.HRFD.md5 +++ b/Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/CHECKSUM.G1267.gnm1.ann1.HRFD.md5 @@ -1,24 +1,21 @@ -98f67718b5e1a8c6a9b5c4ca31b7ce12 ./glycy.G1267.gnm1.ann1.HRFD.gene_models_main.bed.gz.tbi -c2525306fa268499ff632d2c2812b56c ./glycy.G1267.gnm1.ann1.HRFD.legfed_v1_0.M65K.gfa.tsv.gz -cc2321a2bfe3b9597e85ca7f9854947f ./glycy.G1267.gnm1.ann1.HRFD.gene_models_main.gff3.gz.tbi -a41e6c98a46bd56a9d4159d080de4f1d ./glycy.G1267.gnm1.ann1.HRFD.gene_models_orig.gff.gz -59e175fb5091e8a121398c86f14589b2 ./MANIFEST.G1267.gnm1.ann1.HRFD.descriptions.yml -72dc44c6b37fb4a05ef4e377b754b3e5 ./glycy.G1267.gnm1.ann1.HRFD.protein.faa.gz.fai -a78fadfb4b4457336181ae9e6e199606 ./glycy.G1267.gnm1.ann1.HRFD.gene_models_main.bed.gz -16bc189bb6f721828ce4ad37170efef1 ./glycy.G1267.gnm1.ann1.HRFD.protein.faa.gz -b2f63c016a701f1e25878d6675140cff ./BUSCO/glycy.G1267.gnm1.ann1.HRFD.busco.fabales_odb10.full_table.tsv.gz -abdaa8b0f0a953e6832abe94ef1d1fe0 ./BUSCO/glycy.G1267.gnm1.ann1.HRFD.busco.fabales_odb10.short_summary.txt -0fcfa0667e2822f96f9ecff0eda229ae ./BUSCO/glycy.G1267.gnm1.ann1.HRFD.busco.fabales_odb10.short_summary.json -478bb8dfa03caac625470f1a166f72c5 ./MANIFEST.G1267.gnm1.ann1.HRFD.correspondence.yml -c6d108394e370d89774a87242598f4aa ./glycy.G1267.gnm1.ann1.HRFD.mrna.fna.gz.gzi -59d6764fd6d3e5c778de8f677a2d9eb9 ./README.G1267.gnm1.ann1.HRFD.yml -9197da9a998100e8d7977157f68a828f ./glycy.G1267.gnm1.ann1.HRFD.cds.fna.gz.gzi -f0cf889a036c51766539adb5828371fa ./glycy.G1267.gnm1.ann1.HRFD.mrna.fna.gz -2cff86114775144e774f0ebe61d5a62b ./CHANGES.G1267.gnm1.HRFD.txt -38629da9afd18f73415da647ec03280f ./glycy.G1267.gnm1.ann1.HRFD.cds.fna.gz.fai -b008cd72d66cb823fb6cd2e10cd0f0a1 ./glycy.G1267.gnm1.ann1.HRFD.iprscan.gff3.gz.tbi -441c4dc74358fea1afc6eb0348d1071b ./glycy.G1267.gnm1.ann1.HRFD.gene_models_main.gff3.gz -f1c3ae2b71aef3308632e44110be45f3 ./glycy.G1267.gnm1.ann1.HRFD.mrna.fna.gz.fai -e121674dcb87435fafca1b34ed9aebc6 ./glycy.G1267.gnm1.ann1.HRFD.cds.fna.gz -45a1f4dfdc67bb8c89e7d77f46ec2c2d ./glycy.G1267.gnm1.ann1.HRFD.protein.faa.gz.gzi -2f3a2783c0cbcabb7a838f527130f517 ./glycy.G1267.gnm1.ann1.HRFD.iprscan.gff3.gz +2cff86114775144e774f0ebe61d5a62b Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/CHANGES.G1267.gnm1.HRFD.txt +e121674dcb87435fafca1b34ed9aebc6 Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.cds.fna.gz +38629da9afd18f73415da647ec03280f Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.cds.fna.gz.fai +9197da9a998100e8d7977157f68a828f Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.cds.fna.gz.gzi +4e75aa8e25a23d95d5632440c87cf6eb Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.gene_models_main.bed.gz +b7ec5d08f14ebe94ef9db30663558ca4 Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.gene_models_main.bed.gz.tbi +441c4dc74358fea1afc6eb0348d1071b Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.gene_models_main.gff3.gz +cc2321a2bfe3b9597e85ca7f9854947f Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.gene_models_main.gff3.gz.tbi +a41e6c98a46bd56a9d4159d080de4f1d Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.gene_models_orig.gff.gz +2f3a2783c0cbcabb7a838f527130f517 Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.iprscan.gff3.gz +b008cd72d66cb823fb6cd2e10cd0f0a1 Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.iprscan.gff3.gz.tbi +c2525306fa268499ff632d2c2812b56c Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.legfed_v1_0.M65K.gfa.tsv.gz +f0cf889a036c51766539adb5828371fa Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.mrna.fna.gz +f1c3ae2b71aef3308632e44110be45f3 Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.mrna.fna.gz.fai +c6d108394e370d89774a87242598f4aa Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.mrna.fna.gz.gzi +16bc189bb6f721828ce4ad37170efef1 Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.protein.faa.gz +72dc44c6b37fb4a05ef4e377b754b3e5 Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.protein.faa.gz.fai +45a1f4dfdc67bb8c89e7d77f46ec2c2d Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/glycy.G1267.gnm1.ann1.HRFD.protein.faa.gz.gzi +478bb8dfa03caac625470f1a166f72c5 Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/MANIFEST.G1267.gnm1.ann1.HRFD.correspondence.yml +59e175fb5091e8a121398c86f14589b2 Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/MANIFEST.G1267.gnm1.ann1.HRFD.descriptions.yml +59d6764fd6d3e5c778de8f677a2d9eb9 Glycine/cyrtoloba/annotations/G1267.gnm1.ann1.HRFD/README.G1267.gnm1.ann1.HRFD.yml diff --git a/Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/CHECKSUM.G1134.gnm1.ann1.4BJM.md5 b/Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/CHECKSUM.G1134.gnm1.ann1.4BJM.md5 index f8243ed6..522b0a33 100644 --- a/Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/CHECKSUM.G1134.gnm1.ann1.4BJM.md5 +++ b/Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/CHECKSUM.G1134.gnm1.ann1.4BJM.md5 @@ -1,24 +1,21 @@ -6a6d1cbeeeaa4f1942ddcbd7cedca129 ./glydo.G1134.gnm1.ann1.4BJM.gene_models_main.bed.gz.tbi -7c5ae7d6d35242d4a6a81067b7bba30a ./glydo.G1134.gnm1.ann1.4BJM.legfed_v1_0.M65K.gfa.tsv.gz -2444e533fd1e194c53a47c2331374320 ./glydo.G1134.gnm1.ann1.4BJM.cds.fna.gz -04800e068b474880ef632b3d997baae4 ./glydo.G1134.gnm1.ann1.4BJM.iprscan.gff3.gz -6e92c5394bca209669500f527f4db421 ./glydo.G1134.gnm1.ann1.4BJM.gene_models_main.gff3.gz.tbi -2ee537f51bdba1480b3ea86f9b9c3bbf ./glydo.G1134.gnm1.ann1.4BJM.protein.faa.gz.fai -8654e5b4364d16d9a86d6c050396a670 ./README.G1134.gnm1.ann1.4BJM.yml -c78eb2a1b4e37fd314ff597b3497e8a2 ./glydo.G1134.gnm1.ann1.4BJM.gene_models_main.gff3.gz -fe67b1835f52925e80ab3f16acfe46ca ./BUSCO/glydo.G1134.gnm1.ann1.4BJM.busco.fabales_odb10.full_table.tsv.gz -6d13d14c4a25b240e5ca5b478ddb06f5 ./BUSCO/glydo.G1134.gnm1.ann1.4BJM.busco.fabales_odb10.short_summary.txt -20b0c634403306bd25563546df4536de ./BUSCO/glydo.G1134.gnm1.ann1.4BJM.busco.fabales_odb10.short_summary.json -885b0f70cb3d6f2755b75b442743e8f6 ./glydo.G1134.gnm1.ann1.4BJM.cds.fna.gz.fai -6b43dd704b08d7f4e44e94d16ffc7963 ./glydo.G1134.gnm1.ann1.4BJM.mrna.fna.gz.fai -c47ea7eef73dc078fe9327373801619a ./CHANGES.G1134.gnm1.4BJM.txt -43ea2c3ceafcff8a7fb4753309c20e6f ./glydo.G1134.gnm1.ann1.4BJM.iprscan.gff3.gz.tbi -6b20871b65bdae46e4946350399338a3 ./glydo.G1134.gnm1.ann1.4BJM.mrna.fna.gz.gzi -8b295067ca20ffb4a526f810ff5cea0c ./MANIFEST.G1134.gnm1.ann1.4BJM.descriptions.yml -ee829e66bf5bcfb26c4c9fe37063c073 ./glydo.G1134.gnm1.ann1.4BJM.gene_models_orig.gff.gz -fe667f78801bdd5eb90fc4429f4db490 ./glydo.G1134.gnm1.ann1.4BJM.cds.fna.gz.gzi -65a763dc7246edfc32c25eb3c95cd6eb ./MANIFEST.G1134.gnm1.ann1.4BJM.correspondence.yml -6ecc547039a7f4a0fc5b888ac8c5320d ./glydo.G1134.gnm1.ann1.4BJM.protein.faa.gz -dfd75beb4ec5f530bb6ccb6e5a0e2eb3 ./glydo.G1134.gnm1.ann1.4BJM.mrna.fna.gz -edffed67096af438171921e833b9376c ./glydo.G1134.gnm1.ann1.4BJM.protein.faa.gz.gzi -26779beab5770f29251183cde810a5b6 ./glydo.G1134.gnm1.ann1.4BJM.gene_models_main.bed.gz +c47ea7eef73dc078fe9327373801619a Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/CHANGES.G1134.gnm1.4BJM.txt +2444e533fd1e194c53a47c2331374320 Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.cds.fna.gz +885b0f70cb3d6f2755b75b442743e8f6 Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.cds.fna.gz.fai +fe667f78801bdd5eb90fc4429f4db490 Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.cds.fna.gz.gzi +da6d83ee8f98f41ce58c3de82c405065 Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.gene_models_main.bed.gz +a4e381752e2bb360959bc1b437fb8f2e Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.gene_models_main.bed.gz.tbi +c78eb2a1b4e37fd314ff597b3497e8a2 Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.gene_models_main.gff3.gz +6e92c5394bca209669500f527f4db421 Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.gene_models_main.gff3.gz.tbi +ee829e66bf5bcfb26c4c9fe37063c073 Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.gene_models_orig.gff.gz +04800e068b474880ef632b3d997baae4 Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.iprscan.gff3.gz +43ea2c3ceafcff8a7fb4753309c20e6f Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.iprscan.gff3.gz.tbi +7c5ae7d6d35242d4a6a81067b7bba30a Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.legfed_v1_0.M65K.gfa.tsv.gz +dfd75beb4ec5f530bb6ccb6e5a0e2eb3 Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.mrna.fna.gz +6b43dd704b08d7f4e44e94d16ffc7963 Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.mrna.fna.gz.fai +6b20871b65bdae46e4946350399338a3 Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.mrna.fna.gz.gzi +6ecc547039a7f4a0fc5b888ac8c5320d Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.protein.faa.gz +2ee537f51bdba1480b3ea86f9b9c3bbf Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.protein.faa.gz.fai +edffed67096af438171921e833b9376c Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/glydo.G1134.gnm1.ann1.4BJM.protein.faa.gz.gzi +65a763dc7246edfc32c25eb3c95cd6eb Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/MANIFEST.G1134.gnm1.ann1.4BJM.correspondence.yml +8b295067ca20ffb4a526f810ff5cea0c Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/MANIFEST.G1134.gnm1.ann1.4BJM.descriptions.yml +8654e5b4364d16d9a86d6c050396a670 Glycine/dolichocarpa/annotations/G1134.gnm1.ann1.4BJM/README.G1134.gnm1.ann1.4BJM.yml diff --git a/Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/CHECKSUM.G1718.gnm1.ann1.2KSV.md5 b/Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/CHECKSUM.G1718.gnm1.ann1.2KSV.md5 index b0605c52..383b86f4 100644 --- a/Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/CHECKSUM.G1718.gnm1.ann1.2KSV.md5 +++ b/Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/CHECKSUM.G1718.gnm1.ann1.2KSV.md5 @@ -1,24 +1,21 @@ -104839c0cc051d50d8eee2250e4d1db3 ./glyfa.G1718.gnm1.ann1.2KSV.mrna.fna.gz.gzi -cfdf004b7c42aa6cfb973261c9fcc286 ./glyfa.G1718.gnm1.ann1.2KSV.legfed_v1_0.M65K.gfa.tsv.gz -b512d94b1decd5a82030a14aaa83a15d ./glyfa.G1718.gnm1.ann1.2KSV.gene_models_main.bed.gz.tbi -c47ea7eef73dc078fe9327373801619a ./CHANGES.G1718.gnm1.2KSV.txt -7b50c7543d27ae4645eaeeca014ffc43 ./glyfa.G1718.gnm1.ann1.2KSV.gene_models_main.gff3.gz -2705671076d1a9a8888ae5b1d1325b46 ./glyfa.G1718.gnm1.ann1.2KSV.mrna.fna.gz -872f61c6ea1d7c9a5dcba5c807b70155 ./glyfa.G1718.gnm1.ann1.2KSV.protein.faa.gz.fai -4c8d5a5ecf12538a69c11e5dbfd12718 ./glyfa.G1718.gnm1.ann1.2KSV.cds.fna.gz.gzi -2762bb99a8e990ca36fc2a1efa8d4593 ./glyfa.G1718.gnm1.ann1.2KSV.protein.faa.gz -ffb5ef731579ba9a56de77c22a22b67b ./BUSCO/glyfa.G1718.gnm1.ann1.2KSV.busco.fabales_odb10.short_summary.json -d4cc1c60f845eef11868b0c6e220c17d ./BUSCO/glyfa.G1718.gnm1.ann1.2KSV.busco.fabales_odb10.full_table.tsv.gz -9026547c86fbe0d8c0c72dd5d9ff4f8a ./BUSCO/glyfa.G1718.gnm1.ann1.2KSV.busco.fabales_odb10.short_summary.txt -9d0429225b9bd7b75c0ca40af0007c26 ./README.G1718.gnm1.ann1.2KSV.yml -7c68e6625b7c78f4f91f734665b954a6 ./glyfa.G1718.gnm1.ann1.2KSV.cds.fna.gz -c0e9eeb00327c2f23c61ab9a55fee1fe ./glyfa.G1718.gnm1.ann1.2KSV.gene_models_main.bed.gz -3dd4ee39d44a8f1f3304f8ad080cf0b5 ./glyfa.G1718.gnm1.ann1.2KSV.iprscan.gff3.gz -58780607a420508c3ecde39615f88915 ./glyfa.G1718.gnm1.ann1.2KSV.cds.fna.gz.fai -3d9d44db790a985d803f93651ff08a09 ./MANIFEST.G1718.gnm1.ann1.2KSV.descriptions.yml -96561fd33c4036f508dea6e86e49e3db ./glyfa.G1718.gnm1.ann1.2KSV.gene_models_orig.gff.gz -10ab4fe114de1be3634f7ca546f74a10 ./MANIFEST.G1718.gnm1.ann1.2KSV.correspondence.yml -117ca3c8633972de92512ead6a1fe853 ./glyfa.G1718.gnm1.ann1.2KSV.protein.faa.gz.gzi -779d332f71a3d8292572be879d0fde48 ./glyfa.G1718.gnm1.ann1.2KSV.iprscan.gff3.gz.tbi -f0250d84ee314db78b9eed4ed93ca0b5 ./glyfa.G1718.gnm1.ann1.2KSV.mrna.fna.gz.fai -74f7dc24f5be8eb45358693a042f6edb ./glyfa.G1718.gnm1.ann1.2KSV.gene_models_main.gff3.gz.tbi +c47ea7eef73dc078fe9327373801619a Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/CHANGES.G1718.gnm1.2KSV.txt +7c68e6625b7c78f4f91f734665b954a6 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.cds.fna.gz +58780607a420508c3ecde39615f88915 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.cds.fna.gz.fai +4c8d5a5ecf12538a69c11e5dbfd12718 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.cds.fna.gz.gzi +228b38b8e7705e7a452e8ad98e485480 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.gene_models_main.bed.gz +524a5b09be37ab1d0f424b15a38e6d07 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.gene_models_main.bed.gz.tbi +7b50c7543d27ae4645eaeeca014ffc43 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.gene_models_main.gff3.gz +74f7dc24f5be8eb45358693a042f6edb Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.gene_models_main.gff3.gz.tbi +96561fd33c4036f508dea6e86e49e3db Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.gene_models_orig.gff.gz +3dd4ee39d44a8f1f3304f8ad080cf0b5 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.iprscan.gff3.gz +779d332f71a3d8292572be879d0fde48 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.iprscan.gff3.gz.tbi +cfdf004b7c42aa6cfb973261c9fcc286 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.legfed_v1_0.M65K.gfa.tsv.gz +2705671076d1a9a8888ae5b1d1325b46 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.mrna.fna.gz +f0250d84ee314db78b9eed4ed93ca0b5 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.mrna.fna.gz.fai +104839c0cc051d50d8eee2250e4d1db3 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.mrna.fna.gz.gzi +2762bb99a8e990ca36fc2a1efa8d4593 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.protein.faa.gz +872f61c6ea1d7c9a5dcba5c807b70155 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.protein.faa.gz.fai +117ca3c8633972de92512ead6a1fe853 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/glyfa.G1718.gnm1.ann1.2KSV.protein.faa.gz.gzi +10ab4fe114de1be3634f7ca546f74a10 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/MANIFEST.G1718.gnm1.ann1.2KSV.correspondence.yml +3d9d44db790a985d803f93651ff08a09 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/MANIFEST.G1718.gnm1.ann1.2KSV.descriptions.yml +9d0429225b9bd7b75c0ca40af0007c26 Glycine/falcata/annotations/G1718.gnm1.ann1.2KSV/README.G1718.gnm1.ann1.2KSV.yml diff --git a/Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/CHECKSUM.58-161.gnm1.ann1.HJ1K.md5 b/Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/CHECKSUM.58-161.gnm1.ann1.HJ1K.md5 index d98ff1c3..c8d19f6d 100644 --- a/Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/CHECKSUM.58-161.gnm1.ann1.HJ1K.md5 +++ b/Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/CHECKSUM.58-161.gnm1.ann1.HJ1K.md5 @@ -1,31 +1,28 @@ -dfc8aeaedbcece90779bb7fb823fc5af ./glyma.58-161.gnm1.ann1.HJ1K.protein.faa.gz -72ee8ff298c8c4736da47c6cfdbd6b0a ./glyma.58-161.gnm1.ann1.HJ1K.featid_map.tsv.gz -c403f156fd359ae682b51b7549097987 ./README.58-161.gnm1.ann1.HJ1K.yml -629b43bb950b1f1c28b7e7adc6a3db53 ./glyma.58-161.gnm1.ann1.HJ1K.cds.fna.gz.gzi -8793f0cda2f6282f3c18b64c5275f39e ./glyma.58-161.gnm1.ann1.HJ1K.legfed_v1_0.M65K.gfa.tsv.gz -1a8e9b061ebce25cf6fc9932cb4a8508 ./glyma.58-161.gnm1.ann1.HJ1K.gene_models_main.bed.gz.tbi -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.58-161.gnm1.ann1.HJ1K.txt -03d80795aff7657f75752ecf09f76d3e ./glyma.58-161.gnm1.ann1.HJ1K.mrna.fna.gz -142b84c8be2e27343bd460239aa4575c ./glyma.58-161.gnm1.ann1.HJ1K.mrna.fna.gz.gzi -b4866378402e721ab3a8f77504498a80 ./glyma.58-161.gnm1.ann1.HJ1K.protein_primary.faa.gz.fai -526ecfc0ec18a94cd59f231c6d1f67cb ./glyma.58-161.gnm1.ann1.HJ1K.cds_primary.fna.gz.fai -b59db91b4c44904d188631448670dbb4 ./glyma.58-161.gnm1.ann1.HJ1K.protein.faa.gz.gzi -f69a92735935466679d1c39c0caa30ee ./MANIFEST.58-161.gnm1.ann1.HJ1K.correspondence.yml -d57bb33de831feceb426cb913bbe2abf ./glyma.58-161.gnm1.ann1.HJ1K.iprscan.gff3.gz.tbi -c7f7d5c0c91651e4be9830ebb9c64a89 ./glyma.58-161.gnm1.ann1.HJ1K.protein.faa.gz.fai -865760d16dd68d948008903204bebe47 ./BUSCO/glyma.58-161.gnm1.ann1.HJ1K.busco.fabales_odb10.short_summary.txt -133b71101200c3ad72b73d618e1437e1 ./BUSCO/glyma.58-161.gnm1.ann1.HJ1K.busco.fabales_odb10.full_table.tsv.gz -c6b9b89f8d9d5f7858ca7d79b883295d ./BUSCO/glyma.58-161.gnm1.ann1.HJ1K.busco.fabales_odb10.short_summary.json -358f30a12f012a2885386b6aab5e222b ./glyma.58-161.gnm1.ann1.HJ1K.gene_models_main.gff3.gz -b3f9a8958f08e83303cfd952070c8abd ./glyma.58-161.gnm1.ann1.HJ1K.protein_primary.faa.gz -5432227c8d9bd4c56062a99de89d51a3 ./glyma.58-161.gnm1.ann1.HJ1K.protein_primary.faa.gz.gzi -914101559248da92d3ee4d3917bff994 ./glyma.58-161.gnm1.ann1.HJ1K.cds_primary.fna.gz.gzi -bf679ef80c433ffcc1698a87f0d7c359 ./MANIFEST.58-161.gnm1.ann1.HJ1K.descriptions.yml -c4f16e90c36efef5ba5e18d71d602634 ./glyma.58-161.gnm1.ann1.HJ1K.mrna.fna.gz.fai -5c4316f41dd6a71f1e4741950239f518 ./glyma.58-161.gnm1.ann1.HJ1K.cds_primary.fna.gz -5cedd1e527a17a516d3b86fdf4adc8e9 ./glyma.58-161.gnm1.ann1.HJ1K.gene_models_main.bed.gz -9bdf6e8d9214506977bb5d9e4e6f6cc1 ./glyma.58-161.gnm1.ann1.HJ1K.cds.fna.gz.fai -2d3b8eeda224d28a5ee77f84ef602f69 ./glyma.58-161.gnm1.ann1.HJ1K.feature.tsv.gz -89113029bc443be1d3a5e92a9432bfba ./glyma.58-161.gnm1.ann1.HJ1K.cds.fna.gz -744081567f580fcafd37e3089719cade ./glyma.58-161.gnm1.ann1.HJ1K.gene_models_main.gff3.gz.tbi -9634f0926f0111804eaa4f35ccfb6731 ./glyma.58-161.gnm1.ann1.HJ1K.iprscan.gff3.gz +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/CHANGES.58-161.gnm1.ann1.HJ1K.txt +5c4316f41dd6a71f1e4741950239f518 Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.cds_primary.fna.gz +526ecfc0ec18a94cd59f231c6d1f67cb Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.cds_primary.fna.gz.fai +914101559248da92d3ee4d3917bff994 Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.cds_primary.fna.gz.gzi +89113029bc443be1d3a5e92a9432bfba Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.cds.fna.gz +9bdf6e8d9214506977bb5d9e4e6f6cc1 Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.cds.fna.gz.fai +629b43bb950b1f1c28b7e7adc6a3db53 Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.cds.fna.gz.gzi +72ee8ff298c8c4736da47c6cfdbd6b0a Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.featid_map.tsv.gz +2d3b8eeda224d28a5ee77f84ef602f69 Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.feature.tsv.gz +ff61c0fe8f61a6fed8e3449db13e2f19 Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.gene_models_main.bed.gz +9cdab6ca2eb161ef46c4dd5fdab61c99 Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.gene_models_main.bed.gz.tbi +358f30a12f012a2885386b6aab5e222b Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.gene_models_main.gff3.gz +744081567f580fcafd37e3089719cade Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.gene_models_main.gff3.gz.tbi +9634f0926f0111804eaa4f35ccfb6731 Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.iprscan.gff3.gz +d57bb33de831feceb426cb913bbe2abf Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.iprscan.gff3.gz.tbi +8793f0cda2f6282f3c18b64c5275f39e Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.legfed_v1_0.M65K.gfa.tsv.gz +03d80795aff7657f75752ecf09f76d3e Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.mrna.fna.gz +c4f16e90c36efef5ba5e18d71d602634 Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.mrna.fna.gz.fai +142b84c8be2e27343bd460239aa4575c Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.mrna.fna.gz.gzi +b3f9a8958f08e83303cfd952070c8abd Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.protein_primary.faa.gz +b4866378402e721ab3a8f77504498a80 Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.protein_primary.faa.gz.fai +5432227c8d9bd4c56062a99de89d51a3 Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.protein_primary.faa.gz.gzi +dfc8aeaedbcece90779bb7fb823fc5af Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.protein.faa.gz +c7f7d5c0c91651e4be9830ebb9c64a89 Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.protein.faa.gz.fai +b59db91b4c44904d188631448670dbb4 Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/glyma.58-161.gnm1.ann1.HJ1K.protein.faa.gz.gzi +f69a92735935466679d1c39c0caa30ee Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/MANIFEST.58-161.gnm1.ann1.HJ1K.correspondence.yml +bf679ef80c433ffcc1698a87f0d7c359 Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/MANIFEST.58-161.gnm1.ann1.HJ1K.descriptions.yml +c403f156fd359ae682b51b7549097987 Glycine/max/annotations/58-161.gnm1.ann1.HJ1K/README.58-161.gnm1.ann1.HJ1K.yml diff --git a/Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/CHECKSUM.Amsoy.gnm1.ann1.6S5P.md5 b/Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/CHECKSUM.Amsoy.gnm1.ann1.6S5P.md5 index 854dba49..31da44ef 100644 --- a/Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/CHECKSUM.Amsoy.gnm1.ann1.6S5P.md5 +++ b/Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/CHECKSUM.Amsoy.gnm1.ann1.6S5P.md5 @@ -1,31 +1,28 @@ -f20b11b2cb9330602700e90c662f9538 ./glyma.Amsoy.gnm1.ann1.6S5P.protein.faa.gz -94ff5f3702dded5bb87b9a770cbdcb26 ./BUSCO/glyma.Amsoy.gnm1.ann1.6S5P.busco.fabales_odb10.full_table.tsv.gz -2a83589d665a66639981168c12dbef93 ./BUSCO/glyma.Amsoy.gnm1.ann1.6S5P.busco.fabales_odb10.short_summary.json -d3de1a2c205606a5929a53ed19de5f41 ./BUSCO/glyma.Amsoy.gnm1.ann1.6S5P.busco.fabales_odb10.short_summary.txt -e496fbf203f9cf22572430dafcbc3f48 ./glyma.Amsoy.gnm1.ann1.6S5P.mrna.fna.gz -3f4ee7ad02c5c9b76d8d2e0aba7212cd ./glyma.Amsoy.gnm1.ann1.6S5P.cds.fna.gz.gzi -9d9a382527dc1a2f9d59f2a1e4b14e29 ./glyma.Amsoy.gnm1.ann1.6S5P.cds_primary.fna.gz -bd57ef6fb225c21aab59e09914792ed9 ./glyma.Amsoy.gnm1.ann1.6S5P.iprscan.gff3.gz -c4bc68b389e32511450223ffe73305ad ./glyma.Amsoy.gnm1.ann1.6S5P.cds_primary.fna.gz.fai -521a0a185570f71daef97e352a780e03 ./glyma.Amsoy.gnm1.ann1.6S5P.protein_primary.faa.gz.fai -4f39ec131c4eade6c7016a1d466ad14f ./glyma.Amsoy.gnm1.ann1.6S5P.gene_models_main.gff3.gz -e0895bc6822b2d26730fc3fd4207d562 ./glyma.Amsoy.gnm1.ann1.6S5P.iprscan.gff3.gz.tbi -1a94396daa61033f15d923b79eb07e49 ./glyma.Amsoy.gnm1.ann1.6S5P.gene_models_main.gff3.gz.tbi -7603b3623b89ca60266d7a8fc9801c85 ./glyma.Amsoy.gnm1.ann1.6S5P.legfed_v1_0.M65K.gfa.tsv.gz -b72e082b8c7315524ffc635baee40ad5 ./glyma.Amsoy.gnm1.ann1.6S5P.protein.faa.gz.fai -621207170e9b2c7402e8b5e6ca6d10d9 ./glyma.Amsoy.gnm1.ann1.6S5P.gene_models_main.bed.gz.tbi -2e799da0ee1a7c981ff697d147371540 ./MANIFEST.Amsoy.gnm1.ann1.6S5P.descriptions.yml -0a2a9767a79e642762c9746b5d93fab9 ./glyma.Amsoy.gnm1.ann1.6S5P.mrna.fna.gz.fai -2e083f50a9314bbaca2526f6cea00808 ./glyma.Amsoy.gnm1.ann1.6S5P.mrna.fna.gz.gzi -388fc674a2a58349bb546cc4042006cd ./glyma.Amsoy.gnm1.ann1.6S5P.protein.faa.gz.gzi -5740a2649bbfc2c4d85a1736cac87c6f ./MANIFEST.Amsoy.gnm1.ann1.6S5P.correspondence.yml -a639f8a9937c3eb5429e05bb04880d54 ./README.Amsoy.gnm1.ann1.6S5P.yml -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.Amsoy.gnm1.ann1.6S5P.txt -20e89b93784d0e73e280438e04a76418 ./glyma.Amsoy.gnm1.ann1.6S5P.gene_models_main.bed.gz -52ad984f682abbad5f28cc41e3b07265 ./glyma.Amsoy.gnm1.ann1.6S5P.cds_primary.fna.gz.gzi -c4a58df365e68a91442794f566d4677e ./glyma.Amsoy.gnm1.ann1.6S5P.protein_primary.faa.gz.gzi -20301d66ee12d9d2b56dfdb90c860d1b ./glyma.Amsoy.gnm1.ann1.6S5P.protein_primary.faa.gz -608010474acc34b3f4f97321733e4bb4 ./glyma.Amsoy.gnm1.ann1.6S5P.feature.tsv.gz -1669fafeebfa15e1271cd437f7a21e9b ./glyma.Amsoy.gnm1.ann1.6S5P.cds.fna.gz.fai -ec0a8287bc866e2f23ce090bc5610632 ./glyma.Amsoy.gnm1.ann1.6S5P.cds.fna.gz -5a47d27cc516dc70ded70d883fd6975f ./glyma.Amsoy.gnm1.ann1.6S5P.featid_map.tsv.gz +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/CHANGES.Amsoy.gnm1.ann1.6S5P.txt +9d9a382527dc1a2f9d59f2a1e4b14e29 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.cds_primary.fna.gz +c4bc68b389e32511450223ffe73305ad Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.cds_primary.fna.gz.fai +52ad984f682abbad5f28cc41e3b07265 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.cds_primary.fna.gz.gzi +ec0a8287bc866e2f23ce090bc5610632 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.cds.fna.gz +1669fafeebfa15e1271cd437f7a21e9b Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.cds.fna.gz.fai +3f4ee7ad02c5c9b76d8d2e0aba7212cd Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.cds.fna.gz.gzi +5a47d27cc516dc70ded70d883fd6975f Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.featid_map.tsv.gz +608010474acc34b3f4f97321733e4bb4 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.feature.tsv.gz +b0bf3e097f611b887391a497b71e12b3 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.gene_models_main.bed.gz +5303468c4c211176764fa3732d442b94 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.gene_models_main.bed.gz.tbi +4f39ec131c4eade6c7016a1d466ad14f Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.gene_models_main.gff3.gz +1a94396daa61033f15d923b79eb07e49 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.gene_models_main.gff3.gz.tbi +bd57ef6fb225c21aab59e09914792ed9 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.iprscan.gff3.gz +e0895bc6822b2d26730fc3fd4207d562 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.iprscan.gff3.gz.tbi +7603b3623b89ca60266d7a8fc9801c85 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.legfed_v1_0.M65K.gfa.tsv.gz +e496fbf203f9cf22572430dafcbc3f48 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.mrna.fna.gz +0a2a9767a79e642762c9746b5d93fab9 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.mrna.fna.gz.fai +2e083f50a9314bbaca2526f6cea00808 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.mrna.fna.gz.gzi +20301d66ee12d9d2b56dfdb90c860d1b Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.protein_primary.faa.gz +521a0a185570f71daef97e352a780e03 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.protein_primary.faa.gz.fai +c4a58df365e68a91442794f566d4677e Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.protein_primary.faa.gz.gzi +f20b11b2cb9330602700e90c662f9538 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.protein.faa.gz +b72e082b8c7315524ffc635baee40ad5 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.protein.faa.gz.fai +388fc674a2a58349bb546cc4042006cd Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/glyma.Amsoy.gnm1.ann1.6S5P.protein.faa.gz.gzi +5740a2649bbfc2c4d85a1736cac87c6f Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/MANIFEST.Amsoy.gnm1.ann1.6S5P.correspondence.yml +2e799da0ee1a7c981ff697d147371540 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/MANIFEST.Amsoy.gnm1.ann1.6S5P.descriptions.yml +a639f8a9937c3eb5429e05bb04880d54 Glycine/max/annotations/Amsoy.gnm1.ann1.6S5P/README.Amsoy.gnm1.ann1.6S5P.yml diff --git a/Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/CHECKSUM.DongNongNo_50.gnm1.ann1.QSDB.md5 b/Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/CHECKSUM.DongNongNo_50.gnm1.ann1.QSDB.md5 index f4a1074f..a89e4e46 100644 --- a/Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/CHECKSUM.DongNongNo_50.gnm1.ann1.QSDB.md5 +++ b/Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/CHECKSUM.DongNongNo_50.gnm1.ann1.QSDB.md5 @@ -1,31 +1,28 @@ -6334a6642d2615da1ce2c24633f081fc ./glyma.DongNongNo_50.gnm1.ann1.QSDB.cds_primary.fna.gz.fai -0e4dcd0849e0ec26e7bae1b3b5e8fb44 ./glyma.DongNongNo_50.gnm1.ann1.QSDB.featid_map.tsv.gz -68b0581e12d21ad694b8ad3a60f45e66 ./glyma.DongNongNo_50.gnm1.ann1.QSDB.cds.fna.gz.fai -06c452c42fc5105b43890b220ea7d284 ./glyma.DongNongNo_50.gnm1.ann1.QSDB.feature.tsv.gz -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.DongNongNo_50.gnm1.ann1.QSDB.txt -a315f5bd9f408aec05aefab8a1e8587c ./glyma.DongNongNo_50.gnm1.ann1.QSDB.gene_models_main.gff3.gz.tbi -6a89b2737713ab3b43e924f4e4a7d5af ./MANIFEST.DongNongNo_50.gnm1.ann1.QSDB.correspondence.yml -3f5f460248fa7f6c427bf74914ce691c ./glyma.DongNongNo_50.gnm1.ann1.QSDB.iprscan.gff3.gz -0829b9333694ee2402f85e46e4b477de ./MANIFEST.DongNongNo_50.gnm1.ann1.QSDB.descriptions.yml -9fb21abcc15fa1e6fb6ee891990cc4cb ./README.DongNongNo_50.gnm1.ann1.QSDB.yml -8a7f413a12eb780f390eccb96626739c ./glyma.DongNongNo_50.gnm1.ann1.QSDB.protein_primary.faa.gz.gzi -646f98a50dc6c56b31506bdf27bf7d7d ./glyma.DongNongNo_50.gnm1.ann1.QSDB.cds.fna.gz -d40b895c79f06b7cb991c85bf16023a4 ./BUSCO/glyma.DongNongNo_50.gnm1.ann1.QSDB.busco.fabales_odb10.full_table.tsv.gz -2cc5a4ccddf96fec0f6aaf6d2201e10b ./BUSCO/glyma.DongNongNo_50.gnm1.ann1.QSDB.busco.fabales_odb10.short_summary.txt -e29b474c25eadaef20b3432f942c8f6d ./BUSCO/glyma.DongNongNo_50.gnm1.ann1.QSDB.busco.fabales_odb10.short_summary.json -66fca9590377ce4ef817d978f473a4d0 ./glyma.DongNongNo_50.gnm1.ann1.QSDB.mrna.fna.gz.fai -0af4b423cca075746fa85459af3d739b ./glyma.DongNongNo_50.gnm1.ann1.QSDB.protein.faa.gz.gzi -194122845b2c713f8a2e7760e4a46739 ./glyma.DongNongNo_50.gnm1.ann1.QSDB.iprscan.gff3.gz.tbi -c5d728c55fee8b3c6e0b01503d495303 ./glyma.DongNongNo_50.gnm1.ann1.QSDB.protein.faa.gz.fai -f1ac10320fa92030cc1515c33fd39b1c ./glyma.DongNongNo_50.gnm1.ann1.QSDB.legfed_v1_0.M65K.gfa.tsv.gz -b7213dd052d9aed6600cda55989ec70c ./glyma.DongNongNo_50.gnm1.ann1.QSDB.mrna.fna.gz.gzi -6abd411d4051acc5dda172d03b7dae81 ./glyma.DongNongNo_50.gnm1.ann1.QSDB.gene_models_main.bed.gz.tbi -b7e2b11f3bc8e9fbc10307eb07a9f852 ./glyma.DongNongNo_50.gnm1.ann1.QSDB.protein_primary.faa.gz.fai -f59b4756bd306bfa2b4d48d613a704ab ./glyma.DongNongNo_50.gnm1.ann1.QSDB.cds_primary.fna.gz -dd92bf4c6f23f69952fa513fe387e0d2 ./glyma.DongNongNo_50.gnm1.ann1.QSDB.gene_models_main.gff3.gz -cecab7682cb2cbcf47e870ad74c90b1a ./glyma.DongNongNo_50.gnm1.ann1.QSDB.cds.fna.gz.gzi -48dbb42620df53b52ba1ba9c23542402 ./glyma.DongNongNo_50.gnm1.ann1.QSDB.mrna.fna.gz -d516d12e2efeacd8b2e972ac152ef653 ./glyma.DongNongNo_50.gnm1.ann1.QSDB.gene_models_main.bed.gz -871fac18ea3feb48493eac8c51abb83f ./glyma.DongNongNo_50.gnm1.ann1.QSDB.protein_primary.faa.gz -9bf1bf4d358345cb63333bb04fee4253 ./glyma.DongNongNo_50.gnm1.ann1.QSDB.protein.faa.gz -dea9d21b880278780575d1498c823ff2 ./glyma.DongNongNo_50.gnm1.ann1.QSDB.cds_primary.fna.gz.gzi +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/CHANGES.DongNongNo_50.gnm1.ann1.QSDB.txt +f59b4756bd306bfa2b4d48d613a704ab Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.cds_primary.fna.gz +6334a6642d2615da1ce2c24633f081fc Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.cds_primary.fna.gz.fai +dea9d21b880278780575d1498c823ff2 Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.cds_primary.fna.gz.gzi +646f98a50dc6c56b31506bdf27bf7d7d Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.cds.fna.gz +68b0581e12d21ad694b8ad3a60f45e66 Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.cds.fna.gz.fai +cecab7682cb2cbcf47e870ad74c90b1a Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.cds.fna.gz.gzi +0e4dcd0849e0ec26e7bae1b3b5e8fb44 Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.featid_map.tsv.gz +06c452c42fc5105b43890b220ea7d284 Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.feature.tsv.gz +11934d2df887ac5ad1bd1f2b8ee39957 Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.gene_models_main.bed.gz +d03cbe7d4d180c3077887f3536fa14ff Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.gene_models_main.bed.gz.tbi +dd92bf4c6f23f69952fa513fe387e0d2 Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.gene_models_main.gff3.gz +a315f5bd9f408aec05aefab8a1e8587c Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.gene_models_main.gff3.gz.tbi +3f5f460248fa7f6c427bf74914ce691c Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.iprscan.gff3.gz +194122845b2c713f8a2e7760e4a46739 Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.iprscan.gff3.gz.tbi +f1ac10320fa92030cc1515c33fd39b1c Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.legfed_v1_0.M65K.gfa.tsv.gz +48dbb42620df53b52ba1ba9c23542402 Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.mrna.fna.gz +66fca9590377ce4ef817d978f473a4d0 Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.mrna.fna.gz.fai +b7213dd052d9aed6600cda55989ec70c Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.mrna.fna.gz.gzi +871fac18ea3feb48493eac8c51abb83f Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.protein_primary.faa.gz +b7e2b11f3bc8e9fbc10307eb07a9f852 Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.protein_primary.faa.gz.fai +8a7f413a12eb780f390eccb96626739c Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.protein_primary.faa.gz.gzi +9bf1bf4d358345cb63333bb04fee4253 Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.protein.faa.gz +c5d728c55fee8b3c6e0b01503d495303 Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.protein.faa.gz.fai +0af4b423cca075746fa85459af3d739b Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/glyma.DongNongNo_50.gnm1.ann1.QSDB.protein.faa.gz.gzi +6a89b2737713ab3b43e924f4e4a7d5af Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/MANIFEST.DongNongNo_50.gnm1.ann1.QSDB.correspondence.yml +0829b9333694ee2402f85e46e4b477de Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/MANIFEST.DongNongNo_50.gnm1.ann1.QSDB.descriptions.yml +9fb21abcc15fa1e6fb6ee891990cc4cb Glycine/max/annotations/DongNongNo_50.gnm1.ann1.QSDB/README.DongNongNo_50.gnm1.ann1.QSDB.yml diff --git a/Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/CHECKSUM.FengDiHuang.gnm1.ann1.P6HL.md5 b/Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/CHECKSUM.FengDiHuang.gnm1.ann1.P6HL.md5 index 3b28c265..be9cb108 100644 --- a/Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/CHECKSUM.FengDiHuang.gnm1.ann1.P6HL.md5 +++ b/Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/CHECKSUM.FengDiHuang.gnm1.ann1.P6HL.md5 @@ -1,31 +1,28 @@ -3d8aef461abac7f740238fd390c142c2 ./MANIFEST.FengDiHuang.gnm1.ann1.P6HL.descriptions.yml -06366c9ea6cb8339d7537cb1da1fc396 ./glyma.FengDiHuang.gnm1.ann1.P6HL.protein.faa.gz.gzi -ef188797d9af84eb1a72f2a9f14db58f ./glyma.FengDiHuang.gnm1.ann1.P6HL.iprscan.gff3.gz.tbi -6d25013d2c4ac868e2ecd178dd36398e ./glyma.FengDiHuang.gnm1.ann1.P6HL.featid_map.tsv.gz -e81cfcd196d61fe3721fc9174633c13e ./glyma.FengDiHuang.gnm1.ann1.P6HL.cds.fna.gz.fai -c41387f6c6ed3b99201086eee193f425 ./glyma.FengDiHuang.gnm1.ann1.P6HL.protein_primary.faa.gz.fai -489e3a95f8ff2c0be197041941a46389 ./glyma.FengDiHuang.gnm1.ann1.P6HL.feature.tsv.gz -7b86d3e718368cde36f66127db3c0ee6 ./glyma.FengDiHuang.gnm1.ann1.P6HL.mrna.fna.gz.gzi -80293bc98416bce2c1f3414160686d37 ./glyma.FengDiHuang.gnm1.ann1.P6HL.cds_primary.fna.gz.fai -4e6bb1c7e10c5aca577f109cda31473b ./MANIFEST.FengDiHuang.gnm1.ann1.P6HL.correspondence.yml -66ef39118796aa7aa1a0fca1a5c900b7 ./glyma.FengDiHuang.gnm1.ann1.P6HL.gene_models_main.gff3.gz.tbi -a136246751eddafb0584d8d69f096231 ./glyma.FengDiHuang.gnm1.ann1.P6HL.mrna.fna.gz -aa37f83805324d4b5fde1e236cf54492 ./README.FengDiHuang.gnm1.ann1.P6HL.yml -df6981df5885960a6a3b314f335c5e93 ./glyma.FengDiHuang.gnm1.ann1.P6HL.cds_primary.fna.gz -cd44a729796dd2d53f89d338de22684f ./glyma.FengDiHuang.gnm1.ann1.P6HL.cds_primary.fna.gz.gzi -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.FengDiHuang.gnm1.ann1.P6HL.txt -728dcb287f9bd91260c138923c0e06b4 ./glyma.FengDiHuang.gnm1.ann1.P6HL.protein_primary.faa.gz -15aa51c44cca1150fa65df5b20a2a80e ./glyma.FengDiHuang.gnm1.ann1.P6HL.mrna.fna.gz.fai -39082f2c780e87d665b09b8a00261a7f ./BUSCO/glyma.FengDiHuang.gnm1.ann1.P6HL.busco.fabales_odb10.short_summary.json -629f41a241045f65811d31f11ee31234 ./BUSCO/glyma.FengDiHuang.gnm1.ann1.P6HL.busco.fabales_odb10.full_table.tsv.gz -9b447ba7a533ce31eb393852d37415b4 ./BUSCO/glyma.FengDiHuang.gnm1.ann1.P6HL.busco.fabales_odb10.short_summary.txt -212c2a712d8785a756a364cc90818065 ./glyma.FengDiHuang.gnm1.ann1.P6HL.cds.fna.gz.gzi -9f9e9c961ef7a41f3dcc5ef0335d77d1 ./glyma.FengDiHuang.gnm1.ann1.P6HL.protein_primary.faa.gz.gzi -907ad41eb9caee1e1187563ce70abbf0 ./glyma.FengDiHuang.gnm1.ann1.P6HL.protein.faa.gz.fai -a54df4c8f070516cf4d19356eda217db ./glyma.FengDiHuang.gnm1.ann1.P6HL.protein.faa.gz -f21f69e441b618a598076becda056e70 ./glyma.FengDiHuang.gnm1.ann1.P6HL.legfed_v1_0.M65K.gfa.tsv.gz -59a39a1acaf3974bf23b9f9b1f425223 ./glyma.FengDiHuang.gnm1.ann1.P6HL.gene_models_main.bed.gz -21c8db62fd4bef70123d73a8a6929f2b ./glyma.FengDiHuang.gnm1.ann1.P6HL.gene_models_main.gff3.gz -a2c02b1984c7d23377fe74c2d227a13d ./glyma.FengDiHuang.gnm1.ann1.P6HL.gene_models_main.bed.gz.tbi -669c4da0aaad40703f14d25ee4d2f2d5 ./glyma.FengDiHuang.gnm1.ann1.P6HL.cds.fna.gz -40194a8289f5e2ca210d9172e23b0166 ./glyma.FengDiHuang.gnm1.ann1.P6HL.iprscan.gff3.gz +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/CHANGES.FengDiHuang.gnm1.ann1.P6HL.txt +df6981df5885960a6a3b314f335c5e93 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.cds_primary.fna.gz +80293bc98416bce2c1f3414160686d37 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.cds_primary.fna.gz.fai +cd44a729796dd2d53f89d338de22684f Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.cds_primary.fna.gz.gzi +669c4da0aaad40703f14d25ee4d2f2d5 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.cds.fna.gz +e81cfcd196d61fe3721fc9174633c13e Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.cds.fna.gz.fai +212c2a712d8785a756a364cc90818065 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.cds.fna.gz.gzi +6d25013d2c4ac868e2ecd178dd36398e Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.featid_map.tsv.gz +489e3a95f8ff2c0be197041941a46389 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.feature.tsv.gz +9427a839c9e552d2e933017bc10fb8e9 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.gene_models_main.bed.gz +fad428692a79cca7ea978476c0b0690f Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.gene_models_main.bed.gz.tbi +21c8db62fd4bef70123d73a8a6929f2b Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.gene_models_main.gff3.gz +66ef39118796aa7aa1a0fca1a5c900b7 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.gene_models_main.gff3.gz.tbi +40194a8289f5e2ca210d9172e23b0166 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.iprscan.gff3.gz +ef188797d9af84eb1a72f2a9f14db58f Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.iprscan.gff3.gz.tbi +f21f69e441b618a598076becda056e70 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.legfed_v1_0.M65K.gfa.tsv.gz +a136246751eddafb0584d8d69f096231 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.mrna.fna.gz +15aa51c44cca1150fa65df5b20a2a80e Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.mrna.fna.gz.fai +7b86d3e718368cde36f66127db3c0ee6 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.mrna.fna.gz.gzi +728dcb287f9bd91260c138923c0e06b4 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.protein_primary.faa.gz +c41387f6c6ed3b99201086eee193f425 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.protein_primary.faa.gz.fai +9f9e9c961ef7a41f3dcc5ef0335d77d1 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.protein_primary.faa.gz.gzi +a54df4c8f070516cf4d19356eda217db Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.protein.faa.gz +907ad41eb9caee1e1187563ce70abbf0 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.protein.faa.gz.fai +06366c9ea6cb8339d7537cb1da1fc396 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/glyma.FengDiHuang.gnm1.ann1.P6HL.protein.faa.gz.gzi +4e6bb1c7e10c5aca577f109cda31473b Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/MANIFEST.FengDiHuang.gnm1.ann1.P6HL.correspondence.yml +3d8aef461abac7f740238fd390c142c2 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/MANIFEST.FengDiHuang.gnm1.ann1.P6HL.descriptions.yml +aa37f83805324d4b5fde1e236cf54492 Glycine/max/annotations/FengDiHuang.gnm1.ann1.P6HL/README.FengDiHuang.gnm1.ann1.P6HL.yml diff --git a/Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/CHECKSUM.FiskebyIII.gnm1.ann1.SS25.md5 b/Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/CHECKSUM.FiskebyIII.gnm1.ann1.SS25.md5 index 7222baea..ad2f05ae 100644 --- a/Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/CHECKSUM.FiskebyIII.gnm1.ann1.SS25.md5 +++ b/Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/CHECKSUM.FiskebyIII.gnm1.ann1.SS25.md5 @@ -1,38 +1,35 @@ -cd4b54e7b40fceac8313321599f99438 ./glyma.FiskebyIII.gnm1.ann1.SS25.protein.faa.gz.fai -f57fa0b87fc94c0a1ae47267f1e1b96c ./glyma.FiskebyIII.gnm1.ann1.SS25.gene_models_main.gff3.gz -37c018ad848f1ff36f4000c789a2ee4e ./MANIFEST.FiskebyIII.gnm1.ann1.SS25.correspondence.yml -28b991485ca7440fdac10ce59704965a ./glyma.FiskebyIII.gnm1.ann1.SS25.mrna_primary.fna.gz -c66d152c6eea63352e828037abd5957a ./glyma.FiskebyIII.gnm1.ann1.SS25.iprscan.gff3.gz -10398198cc91112198ead5d547172e31 ./glyma.FiskebyIII.gnm1.ann1.SS25.cds_primary.fna.gz.gzi -28b991485ca7440fdac10ce59704965a ./glyma.FiskebyIII.gnm1.ann1.SS25.protein_primary.faa.gz -6c7b9c7a0fb57f4cf394852c8281e838 ./glyma.FiskebyIII.gnm1.ann1.SS25.mrna_primary.fna.gz.fai -ccdf685f5578cbe6f39ba07ed5fdae54 ./glyma.FiskebyIII.gnm1.ann1.SS25.protein_primary.faa.gz.gzi -108177557bff95983349bfcb80e17948 ./glyma.FiskebyIII.gnm1.ann1.SS25.cds.fna.gz.gzi -fbaeb5104ec2441d666aa24182b7c6f2 ./glyma.FiskebyIII.gnm1.ann1.SS25.cds_primary.fna.gz -2774d30d11715b8cb5130075f6641c77 ./glyma.FiskebyIII.gnm1.ann1.SS25.protein.faa.gz -6c4df50e4bc0a548b95ace83dd7d345c ./glyma.FiskebyIII.gnm1.ann1.SS25.mrna.fna.gz.fai -c77abf2ee4d26299c768d0b9013e969f ./README.FiskebyIII.gnm1.ann1.SS25.yml -bf332e39a8d0ff5d78ca460f721187aa ./glyma.FiskebyIII.gnm1.ann1.SS25.cds.fna.gz -0bb6e2595d7269af571027b5020a46c0 ./glyma.FiskebyIII.gnm1.ann1.SS25.gene_exons.gff3.gz -fde8c0b203593c9b56cf07861023d8de ./glyma.FiskebyIII.gnm1.ann1.SS25.info_annot.txt -49b455323f1715b2881439da1d5e8df3 ./BUSCO/glyma.FiskebyIII.gnm1.ann1.SS25.busco.fabales_odb10.short_summary.json -5b699f6e5b756a9e0c9b59d62c3d1ab0 ./BUSCO/glyma.FiskebyIII.gnm1.ann1.SS25.busco.fabales_odb10.short_summary.txt -c48095d548cb97b5b864ac3438f63288 ./BUSCO/glyma.FiskebyIII.gnm1.ann1.SS25.busco.fabales_odb10.full_table.tsv.gz -66d1320d36f563966531177f258ac0f2 ./CHANGES.FiskebyIII.gnm1.ann1.SS25.txt -753487c9580c3e5e90c7dce369c98f0f ./glyma.FiskebyIII.gnm1.ann1.SS25.reference_locus.txt -0463ca9ea61b5b439a0efa5519a7203c ./glyma.FiskebyIII.gnm1.ann1.SS25.defline.txt -3dfdb64fe41e3a63a0d3282c41c5332d ./glyma.FiskebyIII.gnm1.ann1.SS25.mrna.fna.gz.gzi -6580f7c6dbe12993930b2e5727653060 ./glyma.FiskebyIII.gnm1.ann1.SS25.iprscan.gff3.gz.tbi -f37f6c5622cdff310e4b27bd9a338018 ./glyma.FiskebyIII.gnm1.ann1.SS25.gene_models_main.bed.gz.tbi -c036e47a301fdc90c484256ce405e0cb ./glyma.FiskebyIII.gnm1.ann1.SS25.legfed_v1_0.M65K.gfa.tsv.gz -1e845a5f1b429018a7dc238809ae4847 ./glyma.FiskebyIII.gnm1.ann1.SS25.cds.fna.gz.fai -d86e65873f403036dcf0759c51dadce6 ./glyma.FiskebyIII.gnm1.ann1.SS25.repeatmasked_assembly_v1.0.gff3.gz -130a45fd359de8aa77413d9283c5ae6e ./glyma.FiskebyIII.gnm1.ann1.SS25.cds_primary.fna.gz.fai -ff120f64510386e3330da4f2a28c2a3a ./glyma.FiskebyIII.gnm1.ann1.SS25.gene_exons.gff3.gz.tbi -ccdf685f5578cbe6f39ba07ed5fdae54 ./glyma.FiskebyIII.gnm1.ann1.SS25.mrna_primary.fna.gz.gzi -6031a07f8064813316cd9f3c72f7dde0 ./glyma.FiskebyIII.gnm1.ann1.SS25.mrna.fna.gz -6c7b9c7a0fb57f4cf394852c8281e838 ./glyma.FiskebyIII.gnm1.ann1.SS25.protein_primary.faa.gz.fai -9554fc68aedd27edacdfc40e053cbd39 ./MANIFEST.FiskebyIII.gnm1.ann1.SS25.descriptions.yml -e82d677237d11699bb6b29458bf164dc ./glyma.FiskebyIII.gnm1.ann1.SS25.gene_models_main.bed.gz -cb18afc3438f8f9783e5e013ad76be88 ./glyma.FiskebyIII.gnm1.ann1.SS25.gene_models_main.gff3.gz.tbi -d704c25d2144d3085358ea41514e20e4 ./glyma.FiskebyIII.gnm1.ann1.SS25.protein.faa.gz.gzi +66d1320d36f563966531177f258ac0f2 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/CHANGES.FiskebyIII.gnm1.ann1.SS25.txt +fbaeb5104ec2441d666aa24182b7c6f2 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.cds_primary.fna.gz +130a45fd359de8aa77413d9283c5ae6e Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.cds_primary.fna.gz.fai +10398198cc91112198ead5d547172e31 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.cds_primary.fna.gz.gzi +bf332e39a8d0ff5d78ca460f721187aa Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.cds.fna.gz +1e845a5f1b429018a7dc238809ae4847 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.cds.fna.gz.fai +108177557bff95983349bfcb80e17948 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.cds.fna.gz.gzi +0463ca9ea61b5b439a0efa5519a7203c Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.defline.txt +0bb6e2595d7269af571027b5020a46c0 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.gene_exons.gff3.gz +ff120f64510386e3330da4f2a28c2a3a Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.gene_exons.gff3.gz.tbi +43e9b9097615966c97712f9276a3fae9 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.gene_models_main.bed.gz +443f1fa15a1c40dc863c5a77f15d7b38 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.gene_models_main.bed.gz.tbi +f57fa0b87fc94c0a1ae47267f1e1b96c Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.gene_models_main.gff3.gz +cb18afc3438f8f9783e5e013ad76be88 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.gene_models_main.gff3.gz.tbi +fde8c0b203593c9b56cf07861023d8de Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.info_annot.txt +c66d152c6eea63352e828037abd5957a Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.iprscan.gff3.gz +6580f7c6dbe12993930b2e5727653060 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.iprscan.gff3.gz.tbi +c036e47a301fdc90c484256ce405e0cb Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.legfed_v1_0.M65K.gfa.tsv.gz +28b991485ca7440fdac10ce59704965a Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.mrna_primary.fna.gz +6c7b9c7a0fb57f4cf394852c8281e838 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.mrna_primary.fna.gz.fai +ccdf685f5578cbe6f39ba07ed5fdae54 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.mrna_primary.fna.gz.gzi +6031a07f8064813316cd9f3c72f7dde0 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.mrna.fna.gz +6c4df50e4bc0a548b95ace83dd7d345c Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.mrna.fna.gz.fai +3dfdb64fe41e3a63a0d3282c41c5332d Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.mrna.fna.gz.gzi +28b991485ca7440fdac10ce59704965a Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.protein_primary.faa.gz +6c7b9c7a0fb57f4cf394852c8281e838 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.protein_primary.faa.gz.fai +ccdf685f5578cbe6f39ba07ed5fdae54 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.protein_primary.faa.gz.gzi +2774d30d11715b8cb5130075f6641c77 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.protein.faa.gz +cd4b54e7b40fceac8313321599f99438 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.protein.faa.gz.fai +d704c25d2144d3085358ea41514e20e4 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.protein.faa.gz.gzi +753487c9580c3e5e90c7dce369c98f0f Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.reference_locus.txt +d86e65873f403036dcf0759c51dadce6 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/glyma.FiskebyIII.gnm1.ann1.SS25.repeatmasked_assembly_v1.0.gff3.gz +37c018ad848f1ff36f4000c789a2ee4e Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/MANIFEST.FiskebyIII.gnm1.ann1.SS25.correspondence.yml +9554fc68aedd27edacdfc40e053cbd39 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/MANIFEST.FiskebyIII.gnm1.ann1.SS25.descriptions.yml +0da6e07eb16cfa35d338df83fdb195a7 Glycine/max/annotations/FiskebyIII.gnm1.ann1.SS25/README.FiskebyIII.gnm1.ann1.SS25.yml diff --git a/Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/CHECKSUM.HanDouNo_5.gnm1.ann1.ZS7M.md5 b/Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/CHECKSUM.HanDouNo_5.gnm1.ann1.ZS7M.md5 index c6461cd5..646ee008 100644 --- a/Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/CHECKSUM.HanDouNo_5.gnm1.ann1.ZS7M.md5 +++ b/Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/CHECKSUM.HanDouNo_5.gnm1.ann1.ZS7M.md5 @@ -1,31 +1,28 @@ -27cc77705f9c704dd2422798fad0984c ./MANIFEST.HanDouNo_5.gnm1.ann1.ZS7M.correspondence.yml -990aefd7113a05c3a36c7d5a214550e4 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.gene_models_main.gff3.gz -ed55d9ded9bc6954e61a70ad32edfd5e ./README.HanDouNo_5.gnm1.ann1.ZS7M.yml -471c435d7108a0ebb64dd81ad9976fa4 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.cds.fna.gz -f81ec5b7efb8f521d11cc442cc44e584 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.cds_primary.fna.gz -7fc6a2c33e1cc08f3d3fed10cd4814bb ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.gene_models_main.bed.gz -b4b26c878ba9a32de2f63da803220690 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.mrna.fna.gz -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.HanDouNo_5.gnm1.ann1.ZS7M.txt -e036d55928ce5df5bb4324c1ff5a0a69 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.protein_primary.faa.gz.gzi -7b8d00b1451ab01425da58799b942970 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.gene_models_main.bed.gz.tbi -0f6ee43e09341f1915a376898c661b0f ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.legfed_v1_0.M65K.gfa.tsv.gz -251b36205569bb7fe7a9d441df7486e8 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.mrna.fna.gz.gzi -abc10cbd874bcf25e262b83d949d0446 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.cds.fna.gz.gzi -1e8db7904972dc23c547f3ac137027b2 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.protein_primary.faa.gz -71dfb830cc84de6d2226523379496f3d ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.protein.faa.gz.fai -ff42d91498834cdadf2b8c932e631504 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.cds_primary.fna.gz.gzi -1c25f17fbe55f8bdd993923e5fd5f5a4 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.featid_map.tsv.gz -4733d0ad4d15fb87f94fa5e0715ecc04 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.protein.faa.gz -ebf3ce035de9bf2971b7e46cf05ed0b9 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.mrna.fna.gz.fai -6f2d3c71206fab0b869727f80240bf90 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.cds.fna.gz.fai -05a9d5dfafe733c0a0dd315d005426a2 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.protein.faa.gz.gzi -ed54aef70c555d15c63045ada1bdfe54 ./BUSCO/glyma.HanDouNo_5.gnm1.ann1.ZS7M.busco.fabales_odb10.short_summary.txt -a0242a6a4fb9468c8f4187b0aa7fb23a ./BUSCO/glyma.HanDouNo_5.gnm1.ann1.ZS7M.busco.fabales_odb10.short_summary.json -b58762068f25b71ee7db072718553208 ./BUSCO/glyma.HanDouNo_5.gnm1.ann1.ZS7M.busco.fabales_odb10.full_table.tsv.gz -427e85c4e84c76dbc554cefb1ec5919e ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.feature.tsv.gz -10b4c5f51da6e5edaafaa939cab84b28 ./MANIFEST.HanDouNo_5.gnm1.ann1.ZS7M.descriptions.yml -05536e88fa595f998e34ab140ac69505 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.cds_primary.fna.gz.fai -7566a6fceec0a3d899a14416830dd4b6 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.iprscan.gff3.gz.tbi -89f3bd01e96406929baa5479c1d34ab0 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.protein_primary.faa.gz.fai -b3c80c61a7a4b1aaeedceb594534a2b7 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.iprscan.gff3.gz -763e3c4a25f79d6cd8323c05b94303c8 ./glyma.HanDouNo_5.gnm1.ann1.ZS7M.gene_models_main.gff3.gz.tbi +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/CHANGES.HanDouNo_5.gnm1.ann1.ZS7M.txt +f81ec5b7efb8f521d11cc442cc44e584 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.cds_primary.fna.gz +05536e88fa595f998e34ab140ac69505 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.cds_primary.fna.gz.fai +ff42d91498834cdadf2b8c932e631504 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.cds_primary.fna.gz.gzi +471c435d7108a0ebb64dd81ad9976fa4 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.cds.fna.gz +6f2d3c71206fab0b869727f80240bf90 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.cds.fna.gz.fai +abc10cbd874bcf25e262b83d949d0446 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.cds.fna.gz.gzi +1c25f17fbe55f8bdd993923e5fd5f5a4 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.featid_map.tsv.gz +427e85c4e84c76dbc554cefb1ec5919e Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.feature.tsv.gz +50a2dbe7e0ef14b2451d4353b4383f78 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.gene_models_main.bed.gz +2eb2420766ba7a0a42d887d7433a88aa Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.gene_models_main.bed.gz.tbi +990aefd7113a05c3a36c7d5a214550e4 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.gene_models_main.gff3.gz +763e3c4a25f79d6cd8323c05b94303c8 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.gene_models_main.gff3.gz.tbi +b3c80c61a7a4b1aaeedceb594534a2b7 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.iprscan.gff3.gz +7566a6fceec0a3d899a14416830dd4b6 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.iprscan.gff3.gz.tbi +0f6ee43e09341f1915a376898c661b0f Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.legfed_v1_0.M65K.gfa.tsv.gz +b4b26c878ba9a32de2f63da803220690 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.mrna.fna.gz +ebf3ce035de9bf2971b7e46cf05ed0b9 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.mrna.fna.gz.fai +251b36205569bb7fe7a9d441df7486e8 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.mrna.fna.gz.gzi +1e8db7904972dc23c547f3ac137027b2 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.protein_primary.faa.gz +89f3bd01e96406929baa5479c1d34ab0 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.protein_primary.faa.gz.fai +e036d55928ce5df5bb4324c1ff5a0a69 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.protein_primary.faa.gz.gzi +4733d0ad4d15fb87f94fa5e0715ecc04 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.protein.faa.gz +71dfb830cc84de6d2226523379496f3d Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.protein.faa.gz.fai +05a9d5dfafe733c0a0dd315d005426a2 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/glyma.HanDouNo_5.gnm1.ann1.ZS7M.protein.faa.gz.gzi +27cc77705f9c704dd2422798fad0984c Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/MANIFEST.HanDouNo_5.gnm1.ann1.ZS7M.correspondence.yml +10b4c5f51da6e5edaafaa939cab84b28 Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/MANIFEST.HanDouNo_5.gnm1.ann1.ZS7M.descriptions.yml +ed55d9ded9bc6954e61a70ad32edfd5e Glycine/max/annotations/HanDouNo_5.gnm1.ann1.ZS7M/README.HanDouNo_5.gnm1.ann1.ZS7M.yml diff --git a/Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/CHECKSUM.Hefeng25_IGA1002.gnm1.ann1.320V.md5 b/Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/CHECKSUM.Hefeng25_IGA1002.gnm1.ann1.320V.md5 index e98e5c0b..859b8a5e 100644 --- a/Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/CHECKSUM.Hefeng25_IGA1002.gnm1.ann1.320V.md5 +++ b/Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/CHECKSUM.Hefeng25_IGA1002.gnm1.ann1.320V.md5 @@ -1,23 +1,20 @@ -12571b0ae9cf672a544f300ab4530b47 ./MANIFEST.Hefeng25_IGA1002.gnm1.ann1.320V.descriptions.yml -91607914c2cde1c2e7f1ae55bb97ed73 ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.gene_models_main.gff3.gz -e12a42906c6ded3149984080a28fdf5e ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.protein.faa.gz.fai -6daf652b6f46e4e6f762354e3cd38337 ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.iprscan.gff3.gz.tbi -607cd730378eb6e6d22dead67ed90a5b ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.mrna.fna.gz.gzi -8ec674caeabe8e179b8b98930c56d84a ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.protein.faa.gz -79db2b5c1cba6f0dd6447eede0cf71e5 ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.cds.fna.gz -8fbf7236965c217c4deda925917cc9e1 ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.cds.fna.gz.gzi -cdf62c2a92b9e0c8dceacbd7affba799 ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.gene_models_main.gff3.gz.tbi -4ca30e00bf23dfb7668cd9322c67c263 ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.legfed_v1_0.M65K.gfa.tsv.gz -e6157729da137f989c5079efaa7f22b0 ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.gene_models_main.bed.gz.tbi -459622ff99a799b958efbb504caf34b8 ./CHANGES.Hefeng25_IGA1002.gnm1.ann1.320V.txt -043f74de296aac93816c91b5e55d064b ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.cds.fna.gz.fai -4a749a51f12aa6152d490172b975f5cd ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.mrna.fna.gz.fai -7a3f77e254e582f755627ddf797c0caa ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.gene_models_main.bed.gz -3d61db1bc3715cc86d00a52580e24d21 ./BUSCO/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.busco.fabales_odb10.short_summary.json -88c92e187aed2c82b99ca8ed7065cf7a ./BUSCO/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.busco.fabales_odb10.short_summary.txt -c3bdcf6d4492bceace1a6508029e7d05 ./BUSCO/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.busco.fabales_odb10.full_table.tsv.gz -c4cc5a89392fe039a833f15e0863365c ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.mrna.fna.gz -7afb1daa18a703715c71e2d6b1c88063 ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.protein.faa.gz.gzi -83cc83f86ab00d66b6d5bcc664551397 ./MANIFEST.Hefeng25_IGA1002.gnm1.ann1.320V.correspondence.yml -1206e95ecc2456008c882a25122f2019 ./README.Hefeng25_IGA1002.gnm1.ann1.320V.yml -c56c33362fd44f28aa02b8beb0f98b72 ./glyma.Hefeng25_IGA1002.gnm1.ann1.320V.iprscan.gff3.gz +459622ff99a799b958efbb504caf34b8 Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/CHANGES.Hefeng25_IGA1002.gnm1.ann1.320V.txt +79db2b5c1cba6f0dd6447eede0cf71e5 Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.cds.fna.gz +043f74de296aac93816c91b5e55d064b Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.cds.fna.gz.fai +8fbf7236965c217c4deda925917cc9e1 Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.cds.fna.gz.gzi +3eedfe622fc0a3e84f7321a4334eb85f Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.gene_models_main.bed.gz +4eba02662e2fda15fb560ccda53bc644 Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.gene_models_main.bed.gz.tbi +91607914c2cde1c2e7f1ae55bb97ed73 Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.gene_models_main.gff3.gz +cdf62c2a92b9e0c8dceacbd7affba799 Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.gene_models_main.gff3.gz.tbi +c56c33362fd44f28aa02b8beb0f98b72 Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.iprscan.gff3.gz +6daf652b6f46e4e6f762354e3cd38337 Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.iprscan.gff3.gz.tbi +4ca30e00bf23dfb7668cd9322c67c263 Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.legfed_v1_0.M65K.gfa.tsv.gz +c4cc5a89392fe039a833f15e0863365c Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.mrna.fna.gz +4a749a51f12aa6152d490172b975f5cd Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.mrna.fna.gz.fai +607cd730378eb6e6d22dead67ed90a5b Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.mrna.fna.gz.gzi +8ec674caeabe8e179b8b98930c56d84a Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.protein.faa.gz +e12a42906c6ded3149984080a28fdf5e Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.protein.faa.gz.fai +7afb1daa18a703715c71e2d6b1c88063 Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/glyma.Hefeng25_IGA1002.gnm1.ann1.320V.protein.faa.gz.gzi +83cc83f86ab00d66b6d5bcc664551397 Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/MANIFEST.Hefeng25_IGA1002.gnm1.ann1.320V.correspondence.yml +12571b0ae9cf672a544f300ab4530b47 Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/MANIFEST.Hefeng25_IGA1002.gnm1.ann1.320V.descriptions.yml +1206e95ecc2456008c882a25122f2019 Glycine/max/annotations/Hefeng25_IGA1002.gnm1.ann1.320V/README.Hefeng25_IGA1002.gnm1.ann1.320V.yml diff --git a/Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/CHECKSUM.HeiHeNo_43.gnm1.ann1.PDXG.md5 b/Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/CHECKSUM.HeiHeNo_43.gnm1.ann1.PDXG.md5 index 2e807e80..e59b2df1 100644 --- a/Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/CHECKSUM.HeiHeNo_43.gnm1.ann1.PDXG.md5 +++ b/Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/CHECKSUM.HeiHeNo_43.gnm1.ann1.PDXG.md5 @@ -1,31 +1,28 @@ -043400c66e749955dbbcbd81ba61122b ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.protein_primary.faa.gz.fai -2557fa73e71a96e374e15edbb3c82f56 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.mrna.fna.gz -56a107b7f0c83a7b5d07c36f05cf7021 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.cds.fna.gz.fai -2597c81749f2dfc9006456d377018fa6 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.feature.tsv.gz -31512fd8e76584ab6f06b9584ac19dcd ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.mrna.fna.gz.fai -30e487315a28e0170112494801ea150b ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.gene_models_main.gff3.gz -c612d2f7b60c4d0328ac580c7966d651 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.protein.faa.gz.gzi -ad19cf29f7ab2393b3c308010f2980ec ./README.HeiHeNo_43.gnm1.ann1.PDXG.yml -1a0a393448efc6003312599157351e98 ./BUSCO/glyma.HeiHeNo_43.gnm1.ann1.PDXG.busco.fabales_odb10.short_summary.json -e55a7e420a4c7c26d72a666af2cbe552 ./BUSCO/glyma.HeiHeNo_43.gnm1.ann1.PDXG.busco.fabales_odb10.full_table.tsv.gz -6f51fe023b2c335f2dd9dcaabf50f22b ./BUSCO/glyma.HeiHeNo_43.gnm1.ann1.PDXG.busco.fabales_odb10.short_summary.txt -2efc4cb98f006ab358e577ee3db59b05 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.iprscan.gff3.gz -08446c5719a07ec22454f84c70725815 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.cds_primary.fna.gz.fai -ea9f84bf9e60704afe44ba5975298be1 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.cds.fna.gz -a1bf464cb46c4bb113192b3abbe56493 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.cds_primary.fna.gz.gzi -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.HeiHeNo_43.gnm1.ann1.PDXG.txt -94d6840807e6dc60773f3cb679792757 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.protein_primary.faa.gz -fbaa2c4b35e9a27bd2ddbff0b4a5e9b5 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.cds_primary.fna.gz -efdfb6c29547281ce40228f035920d1a ./MANIFEST.HeiHeNo_43.gnm1.ann1.PDXG.correspondence.yml -0059fdc5f08c646265c3100fa629cd16 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.gene_models_main.gff3.gz.tbi -88ee03ae935380e209d9838f981a4f46 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.gene_models_main.bed.gz -d4828771aa05ebc4d0c0f1c20747548f ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.protein.faa.gz.fai -861d68d11e75dd3d709914f650a92fb0 ./MANIFEST.HeiHeNo_43.gnm1.ann1.PDXG.descriptions.yml -6fd94d294c14fd1b74d1afe5221003c0 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.legfed_v1_0.M65K.gfa.tsv.gz -32ce6e009c6a63bcfec8d9b4058955b8 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.mrna.fna.gz.gzi -b71da6cba86314dc57630a874be6edd7 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.iprscan.gff3.gz.tbi -d15cf31ad38de2cdd99a796a2d2f2602 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.gene_models_main.bed.gz.tbi -072a310cd90da2abd1e7f40249a4fedd ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.cds.fna.gz.gzi -a612fcd13dc081127efeaf93a3591c6f ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.protein_primary.faa.gz.gzi -28754d6a57ea8e1133022bec879cd1c8 ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.protein.faa.gz -b54dd9a5c52aa1483860538392d9bd2e ./glyma.HeiHeNo_43.gnm1.ann1.PDXG.featid_map.tsv.gz +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/CHANGES.HeiHeNo_43.gnm1.ann1.PDXG.txt +fbaa2c4b35e9a27bd2ddbff0b4a5e9b5 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.cds_primary.fna.gz +08446c5719a07ec22454f84c70725815 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.cds_primary.fna.gz.fai +a1bf464cb46c4bb113192b3abbe56493 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.cds_primary.fna.gz.gzi +ea9f84bf9e60704afe44ba5975298be1 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.cds.fna.gz +56a107b7f0c83a7b5d07c36f05cf7021 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.cds.fna.gz.fai +072a310cd90da2abd1e7f40249a4fedd Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.cds.fna.gz.gzi +b54dd9a5c52aa1483860538392d9bd2e Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.featid_map.tsv.gz +2597c81749f2dfc9006456d377018fa6 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.feature.tsv.gz +d5cc71e5d7631de2a8dd2adad065fef5 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.gene_models_main.bed.gz +8126214cb38f1c691419e78136431c9f Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.gene_models_main.bed.gz.tbi +30e487315a28e0170112494801ea150b Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.gene_models_main.gff3.gz +0059fdc5f08c646265c3100fa629cd16 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.gene_models_main.gff3.gz.tbi +2efc4cb98f006ab358e577ee3db59b05 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.iprscan.gff3.gz +b71da6cba86314dc57630a874be6edd7 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.iprscan.gff3.gz.tbi +6fd94d294c14fd1b74d1afe5221003c0 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.legfed_v1_0.M65K.gfa.tsv.gz +2557fa73e71a96e374e15edbb3c82f56 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.mrna.fna.gz +31512fd8e76584ab6f06b9584ac19dcd Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.mrna.fna.gz.fai +32ce6e009c6a63bcfec8d9b4058955b8 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.mrna.fna.gz.gzi +94d6840807e6dc60773f3cb679792757 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.protein_primary.faa.gz +043400c66e749955dbbcbd81ba61122b Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.protein_primary.faa.gz.fai +a612fcd13dc081127efeaf93a3591c6f Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.protein_primary.faa.gz.gzi +28754d6a57ea8e1133022bec879cd1c8 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.protein.faa.gz +d4828771aa05ebc4d0c0f1c20747548f Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.protein.faa.gz.fai +c612d2f7b60c4d0328ac580c7966d651 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/glyma.HeiHeNo_43.gnm1.ann1.PDXG.protein.faa.gz.gzi +efdfb6c29547281ce40228f035920d1a Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/MANIFEST.HeiHeNo_43.gnm1.ann1.PDXG.correspondence.yml +861d68d11e75dd3d709914f650a92fb0 Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/MANIFEST.HeiHeNo_43.gnm1.ann1.PDXG.descriptions.yml +ad19cf29f7ab2393b3c308010f2980ec Glycine/max/annotations/HeiHeNo_43.gnm1.ann1.PDXG/README.HeiHeNo_43.gnm1.ann1.PDXG.yml diff --git a/Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/CHECKSUM.Huaxia3_IGA1007.gnm1.ann1.LKC7.md5 b/Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/CHECKSUM.Huaxia3_IGA1007.gnm1.ann1.LKC7.md5 index c2325b4d..a0abdc7c 100644 --- a/Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/CHECKSUM.Huaxia3_IGA1007.gnm1.ann1.LKC7.md5 +++ b/Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/CHECKSUM.Huaxia3_IGA1007.gnm1.ann1.LKC7.md5 @@ -1,25 +1,22 @@ -ba88e28264c86e85f2202bf2e41aee57 ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.protein.faa.gz.fai -f780472244621a360313f668a683ab9d ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.mrna.fna.gz -01f05237296bc6e372bf81085e364e3e ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.protein.faa.gz -84d464a0f1f4d2892a9ebecdbc93350c ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.mrna.fna.gz.fai -372ad8239920e11f095df502bb726713 ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.gene_models_main.bed.gz -7271e4ed84a0f967ca787dce38a27dc9 ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.cds.fna.gz.gzi -d562496c5253c31cf8da09c1af881d4e ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.iprscan.gff3.gz.tbi -b451b9d77bbd04d5326ba841ae56f3b9 ./MANIFEST.Huaxia3_IGA1007.gnm1.ann1.LKC7.descriptions.yml -8ee9a087903780b40f7cb58422a05252 ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.cds.fna.gz -feff516fc5a1e66b74e2932a296177d2 ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.iprscan.gff3.gz -b451b9d77bbd04d5326ba841ae56f3b9 ./MANIFEST.glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.descriptions.yml -38c473b3c36aa5acfedae86e19892560 ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.gene_models_main.gff3.gz.tbi -8e64ef0fff8c913561a24227b77c9135 ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.legfed_v1_0.M65K.gfa.tsv.gz -c58abb26f68cae6f7f0b186af102b7cb ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.gene_models_main.bed.gz.tbi -ab8023af505ae511328d889c8594ec73 ./CHANGES.Huaxia3_IGA1007.gnm1.ann1.LKC7.txt -cc6e67c471c5a887dae9c6558cae9117 ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.mrna.fna.gz.gzi -41694f591395b6c7a68f012370f53542 ./MANIFEST.Huaxia3_IGA1007.gnm1.ann1.LKC7.correspondence.yml -0a09ee1e7774bc261dee0d8b009bcd49 ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.cds.fna.gz.fai -41694f591395b6c7a68f012370f53542 ./MANIFEST.glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.correspondence.yml -e65fdd5e29a0182d468ce888568a79ae ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.gene_models_main.gff3.gz -c83adff95a60472910a7d322a4cfac55 ./README.Huaxia3_IGA1007.gnm1.ann1.LKC7.yml -e2447e6584e01c987cf1ccb0b81c8520 ./BUSCO/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.busco.fabales_odb10.short_summary.txt -6bb696c7816ba2180192d30cd121429d ./BUSCO/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.busco.fabales_odb10.full_table.tsv.gz -803ec14b382948ddb6ec118a77b28a26 ./BUSCO/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.busco.fabales_odb10.short_summary.json -869091492e46216a5097ac495ebcda91 ./glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.protein.faa.gz.gzi +ab8023af505ae511328d889c8594ec73 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/CHANGES.Huaxia3_IGA1007.gnm1.ann1.LKC7.txt +8ee9a087903780b40f7cb58422a05252 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.cds.fna.gz +0a09ee1e7774bc261dee0d8b009bcd49 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.cds.fna.gz.fai +7271e4ed84a0f967ca787dce38a27dc9 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.cds.fna.gz.gzi +2b4788eb1feef4ad50e56d8800450e95 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.gene_models_main.bed.gz +50a3aa37e0772b7f333fb6a0e3489768 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.gene_models_main.bed.gz.tbi +e65fdd5e29a0182d468ce888568a79ae Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.gene_models_main.gff3.gz +38c473b3c36aa5acfedae86e19892560 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.gene_models_main.gff3.gz.tbi +feff516fc5a1e66b74e2932a296177d2 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.iprscan.gff3.gz +d562496c5253c31cf8da09c1af881d4e Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.iprscan.gff3.gz.tbi +8e64ef0fff8c913561a24227b77c9135 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.legfed_v1_0.M65K.gfa.tsv.gz +f780472244621a360313f668a683ab9d Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.mrna.fna.gz +84d464a0f1f4d2892a9ebecdbc93350c Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.mrna.fna.gz.fai +cc6e67c471c5a887dae9c6558cae9117 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.mrna.fna.gz.gzi +01f05237296bc6e372bf81085e364e3e Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.protein.faa.gz +ba88e28264c86e85f2202bf2e41aee57 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.protein.faa.gz.fai +869091492e46216a5097ac495ebcda91 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.protein.faa.gz.gzi +41694f591395b6c7a68f012370f53542 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/MANIFEST.glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.correspondence.yml +b451b9d77bbd04d5326ba841ae56f3b9 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/MANIFEST.glyma.Huaxia3_IGA1007.gnm1.ann1.LKC7.descriptions.yml +41694f591395b6c7a68f012370f53542 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/MANIFEST.Huaxia3_IGA1007.gnm1.ann1.LKC7.correspondence.yml +b451b9d77bbd04d5326ba841ae56f3b9 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/MANIFEST.Huaxia3_IGA1007.gnm1.ann1.LKC7.descriptions.yml +c83adff95a60472910a7d322a4cfac55 Glycine/max/annotations/Huaxia3_IGA1007.gnm1.ann1.LKC7/README.Huaxia3_IGA1007.gnm1.ann1.LKC7.yml diff --git a/Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/CHECKSUM.Hwangkeum.gnm1.ann1.1G4F.md5 b/Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/CHECKSUM.Hwangkeum.gnm1.ann1.1G4F.md5 index 0c634a27..ffc6ad74 100644 --- a/Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/CHECKSUM.Hwangkeum.gnm1.ann1.1G4F.md5 +++ b/Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/CHECKSUM.Hwangkeum.gnm1.ann1.1G4F.md5 @@ -1,35 +1,29 @@ -871dda88ecc9afdfbb691c45cc729256 ./glyma.Hwangkeum.gnm1.ann1.1G4F.legfed_v1_0.M65K.gfa.tsv.gz -0cd27266547f4d44f3efc3dfa8efc5f6 ./glyma.Hwangkeum.gnm1.ann1.1G4F.gene_models_main.bed.gz.tbi -1295b1dc2118fdeec945727b3a799174 ./glyma.Hwangkeum.gnm1.ann1.1G4F.gene_models_main.bed.gz -d6476123a09c59d081bcbd466cff34e2 ./glyma.Hwangkeum.gnm1.ann1.1G4F.mrna_primary.fna.gz.gzi -eb30589cca79d62f2dfc562d6c13f39e ./glyma.Hwangkeum.gnm1.ann1.1G4F.cds.fna.gz -d9224ef784c2655745422cb5200c03ef ./README.Hwangkeum.gnm1.ann1.1G4F.yml -0b6cc5e22e2093dbe7fea6f3694992fd ./glyma.Hwangkeum.gnm1.ann1.1G4F.mrna.fna.gz.gzi -44d7c25f4d577148c0db2448a1b6dfe0 ./CHANGES.Hwangkeum.gnm1.ann1.1G4F.txt -4a56dc4d6146ea816e50c23b4f2dff89 ./glyma.Hwangkeum.gnm1.ann1.1G4F.gene_models_main.gff3.gz.tbi -b43c8760b3d70653fa9d31ea255f98ca ./glyma.Hwangkeum.gnm1.ann1.1G4F.cds_primary.fna.gz.gzi -df6cf8100d6d6313e88b535d8debfe12 ./glyma.Hwangkeum.gnm1.ann1.1G4F.protein_primary.faa.gz.fai -36cd61939cb1ec459da239f816a94dda ./glyma.Hwangkeum.gnm1.ann1.1G4F.protein_primary.faa.gz -5dfcf1d2c8c7f4d3bfddbdf4e5b812f9 ./MANIFEST.Hwangkeum.gnm1.ann1.1G4F.correspondence.yml -61988b2839a22e5d8e3dbabad8051635 ./glyma.Hwangkeum.gnm1.ann1.1G4F.cds.fna.gz.fai -d230f8a63e6f2098b4ccd457ce9f00fd ./glyma.Hwangkeum.gnm1.ann1.1G4F.protein.faa.gz.gzi -343179628cd65c6bd8ccfabf74ce421d ./glyma.Hwangkeum.gnm1.ann1.1G4F.mrna_primary.fna.gz -3e705d96e21a47961178e3f3bcb2568c ./glyma.Hwangkeum.gnm1.ann1.1G4F.protein.faa.gz -3fb59800c87a47bb22719b9a56c1c414 ./glyma.Hwangkeum.gnm1.ann1.1G4F.protein.faa.gz.fai -5c7b7f341fa9df898c21f7f450a21367 ./glyma.Hwangkeum.gnm1.ann1.1G4F.iprscan.gff3.gz -354c46af3e143e639ccb7477b639299e ./glyma.Hwangkeum.gnm1.ann1.1G4F.cds.fna.gz.gzi -88431a84865d8ebf4ec3b69233fdd845 ./BUSCO/glyma.Hwangkeum.gnm1.ann1.1G4F.busco.fabales_odb10.full_table.tsv.gz -02c7e36a17cb91a17efc62480a405570 ./BUSCO/glyma.Hwangkeum.gnm1.ann1.1G4F.busco.fabales_odb10.short_summary.txt -ca16e1138d2d50fa0ad1c23c2b77bf71 ./BUSCO/glyma.Hwangkeum.gnm1.ann1.1G4F.busco.fabales_odb10.short_summary.json -14709264ea8e0598ff057295b2602d43 ./MANIFEST.Hwangkeum.gnm1.ann1.1G4F.descriptions.yml -c0c47c2439eb93ad9d1b15d441562829 ./glyma.Hwangkeum.gnm1.ann1.1G4F.cds_primary.fna.gz.fai -baa26e76bcc3fad4c2453dac256d5826 ./glyma.Hwangkeum.gnm1.ann1.1G4F.protein_primary.faa.gz.gzi -b04ec05b2a7f698ea710f72330d21ce3 ./glyma.Hwangkeum.gnm1.ann1.1G4F.mrna.fna.gz.fai -7db021c2686e943e2c0d01d028d55f50 ./glyma.Hwangkeum.gnm1.ann1.1G4F.cds_primary.fna.gz -5217201694623d75749ab5a3e417d641 ./BUSCO_proteins_fabales_odb10/short_summary.json -17246a4f2676600cfaf7242e361c5f89 ./BUSCO_proteins_fabales_odb10/full_table.tsv.gz -718cd1c57546c4c1126ab77568d48d9e ./BUSCO_proteins_fabales_odb10/short_summary.txt -8a7fcbbac553629f16a2bce6ff8c3e5d ./glyma.Hwangkeum.gnm1.ann1.1G4F.iprscan.gff3.gz.tbi -7abb6d4367393ffeb3e6886b2b27fca0 ./glyma.Hwangkeum.gnm1.ann1.1G4F.mrna.fna.gz -c115c57590552a827477ad9e60cf703f ./glyma.Hwangkeum.gnm1.ann1.1G4F.mrna_primary.fna.gz.fai -224fcf1a22ab75e9d0f3ba0918b62b55 ./glyma.Hwangkeum.gnm1.ann1.1G4F.gene_models_main.gff3.gz +924061e777c09a1ceb74a805495486ad Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/CHANGES.Hwangkeum.gnm1.ann1.1G4F.txt +7db021c2686e943e2c0d01d028d55f50 Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.cds_primary.fna.gz +c0c47c2439eb93ad9d1b15d441562829 Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.cds_primary.fna.gz.fai +b43c8760b3d70653fa9d31ea255f98ca Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.cds_primary.fna.gz.gzi +eb30589cca79d62f2dfc562d6c13f39e Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.cds.fna.gz +61988b2839a22e5d8e3dbabad8051635 Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.cds.fna.gz.fai +354c46af3e143e639ccb7477b639299e Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.cds.fna.gz.gzi +dc40ad7b697d92cc50cc085b673726bd Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.gene_models_main.bed.gz +e14dfb41f65a9f200468c5ad71d7a31d Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.gene_models_main.bed.gz.tbi +84e53e3e9e6a4af44de58d9cdadb4056 Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.gene_models_main.gff3.gz +4a56dc4d6146ea816e50c23b4f2dff89 Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.gene_models_main.gff3.gz.tbi +5c7b7f341fa9df898c21f7f450a21367 Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.iprscan.gff3.gz +8a7fcbbac553629f16a2bce6ff8c3e5d Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.iprscan.gff3.gz.tbi +871dda88ecc9afdfbb691c45cc729256 Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.legfed_v1_0.M65K.gfa.tsv.gz +343179628cd65c6bd8ccfabf74ce421d Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.mrna_primary.fna.gz +c115c57590552a827477ad9e60cf703f Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.mrna_primary.fna.gz.fai +d6476123a09c59d081bcbd466cff34e2 Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.mrna_primary.fna.gz.gzi +7abb6d4367393ffeb3e6886b2b27fca0 Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.mrna.fna.gz +b04ec05b2a7f698ea710f72330d21ce3 Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.mrna.fna.gz.fai +0b6cc5e22e2093dbe7fea6f3694992fd Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.mrna.fna.gz.gzi +36cd61939cb1ec459da239f816a94dda Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.protein_primary.faa.gz +df6cf8100d6d6313e88b535d8debfe12 Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.protein_primary.faa.gz.fai +baa26e76bcc3fad4c2453dac256d5826 Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.protein_primary.faa.gz.gzi +3e705d96e21a47961178e3f3bcb2568c Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.protein.faa.gz +3fb59800c87a47bb22719b9a56c1c414 Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.protein.faa.gz.fai +d230f8a63e6f2098b4ccd457ce9f00fd Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/glyma.Hwangkeum.gnm1.ann1.1G4F.protein.faa.gz.gzi +5dfcf1d2c8c7f4d3bfddbdf4e5b812f9 Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/MANIFEST.Hwangkeum.gnm1.ann1.1G4F.correspondence.yml +14709264ea8e0598ff057295b2602d43 Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/MANIFEST.Hwangkeum.gnm1.ann1.1G4F.descriptions.yml +d9224ef784c2655745422cb5200c03ef Glycine/max/annotations/Hwangkeum.gnm1.ann1.1G4F/README.Hwangkeum.gnm1.ann1.1G4F.yml diff --git a/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/CHECKSUM.JD17.gnm1.ann1.CLFP.md5 b/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/CHECKSUM.JD17.gnm1.ann1.CLFP.md5 index 6bffe9aa..51a4474f 100644 --- a/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/CHECKSUM.JD17.gnm1.ann1.CLFP.md5 +++ b/Glycine/max/annotations/JD17.gnm1.ann1.CLFP/CHECKSUM.JD17.gnm1.ann1.CLFP.md5 @@ -1,33 +1,30 @@ -e9f1fcbe286b7003e1cf5d741ec44f7d ./glyma.JD17.gnm1.ann1.CLFP.mrna_primary.fna.gz.gzi -b72f8cb2487f7b1b9dd343603be009ed ./glyma.JD17.gnm1.ann1.CLFP.iprscan.gff3.gz -d0fa96a40361199f6a05c0b7bdd17adb ./glyma.JD17.gnm1.ann1.CLFP.gene_models_main.gff3.gz -bcd9b1df636c0a6b73ed51f1fd8f3a29 ./glyma.JD17.gnm1.ann1.CLFP.protein.faa.gz -ce5ce25fae375da9ebec359c77220f50 ./BUSCO/glyma.JD17.gnm1.ann1.CLFP.busco.fabales_odb10.short_summary.txt -f1092789774522e34cb17f76a66be932 ./BUSCO/glyma.JD17.gnm1.ann1.CLFP.busco.fabales_odb10.full_table.tsv.gz -dbeda7c10ea5506314186fcdd1232a07 ./BUSCO/glyma.JD17.gnm1.ann1.CLFP.busco.fabales_odb10.short_summary.json -d41d8cd98f00b204e9800998ecf8427e ./BUSCO/.busco.fabales_odb10.full_table.tsv.gz -b7f45c39b9fe068c7b7115288ba538d8 ./glyma.JD17.gnm1.ann1.CLFP.gene_models_main.gff3.gz.tbi -c9f56fd57ab7865b35a40a798431396e ./glyma.JD17.gnm1.ann1.CLFP.cds.fna.gz.gzi -52f19639ba5fca7117fada8c7896c60a ./glyma.JD17.gnm1.ann1.CLFP.protein.faa.gz.fai -5aff5ac9de5f2c298bf363bb58517a90 ./glyma.JD17.gnm1.ann1.CLFP.cds.bed.gz -9a6de3813a57300bdc2cb90e8c1d944a ./glyma.JD17.gnm1.ann1.CLFP.featid_map.tsv.gz -fee2f08b48b92a384d4a9c7038ed857f ./glyma.JD17.gnm1.ann1.CLFP.mrna.fna.gz.fai -0a2b4cf0e866db11463391b3f3ad7996 ./glyma.JD17.gnm1.ann1.CLFP.cds_primary.fna.gz.fai -ef3b06eb0dce5849a4669821d5b61a90 ./glyma.JD17.gnm1.ann1.CLFP.protein_primary.faa.gz.gzi -5750576349f60c9f7e5c33c81ee536d6 ./glyma.JD17.gnm1.ann1.CLFP.mrna_primary.fna.gz -56ece713661a50d0625d0dbbd915380f ./glyma.JD17.gnm1.ann1.CLFP.cds_primary.fna.gz -c43d2d6fb1b1d2bc0edf93d4617b6016 ./README.JD17.gnm1.ann1.CLFP.yml -64a09cc71d7b4f493388a6ea0da1cdea ./glyma.JD17.gnm1.ann1.CLFP.legfed_v1_0.M65K.gfa.tsv.gz -d4d81ba9b0deddad215087b111af2235 ./glyma.JD17.gnm1.ann1.CLFP.mrna.fna.gz -c0de1449c9300953ccc9def70bb3bd18 ./glyma.JD17.gnm1.ann1.CLFP.protein_primary.faa.gz.fai -2064325159be4a2e78d4c60808ccc4ec ./glyma.JD17.gnm1.ann1.CLFP.protein_primary.faa.gz -ca9a25d99e793cd6c37a6d6a5852f2d1 ./glyma.JD17.gnm1.ann1.CLFP.cds_primary.fna.gz.gzi -40576c1baab4da982306413ed802d07b ./CHANGES.JD17.gnm1.ann1.CLFP.txt -1fcea5e724403186776d4c449c546241 ./glyma.JD17.gnm1.ann1.CLFP.mrna.fna.gz.gzi -efa212fd186fe5bd4eb7114f09d80795 ./MANIFEST.JD17.gnm1.ann1.CLFP.correspondence.yml -8c9ab2bb694fb9c67d1c9e5f0646c049 ./glyma.JD17.gnm1.ann1.CLFP.cds.fna.gz.fai -f5d4b53ccef40f33aed192fd01b5c10b ./glyma.JD17.gnm1.ann1.CLFP.iprscan.gff3.gz.tbi -4bfbeaadc80dd21db27b9f679c0b71e2 ./glyma.JD17.gnm1.ann1.CLFP.protein.faa.gz.gzi -db7954ee45d4059c805b976dba4d73c7 ./MANIFEST.JD17.gnm1.ann1.CLFP.descriptions.yml -9f8e09705932f554f1a718560e1682e2 ./glyma.JD17.gnm1.ann1.CLFP.mrna_primary.fna.gz.fai -f2e5061aa4d93107c51a45021ab78506 ./glyma.JD17.gnm1.ann1.CLFP.cds.fna.gz +40576c1baab4da982306413ed802d07b Glycine/max/annotations/JD17.gnm1.ann1.CLFP/CHANGES.JD17.gnm1.ann1.CLFP.txt +56ece713661a50d0625d0dbbd915380f Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.cds_primary.fna.gz +0a2b4cf0e866db11463391b3f3ad7996 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.cds_primary.fna.gz.fai +ca9a25d99e793cd6c37a6d6a5852f2d1 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.cds_primary.fna.gz.gzi +f2e5061aa4d93107c51a45021ab78506 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.cds.fna.gz +8c9ab2bb694fb9c67d1c9e5f0646c049 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.cds.fna.gz.fai +c9f56fd57ab7865b35a40a798431396e Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.cds.fna.gz.gzi +9a6de3813a57300bdc2cb90e8c1d944a Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.featid_map.tsv.gz +cadf1bd3ee6db0e6fa03e4d9c6c46b1f Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.gene_models_main.bed.gz +45899d2dfbfe293a5763488e3c07ce33 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.gene_models_main.bed.gz.tbi +d0fa96a40361199f6a05c0b7bdd17adb Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.gene_models_main.gff3.gz +b7f45c39b9fe068c7b7115288ba538d8 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.gene_models_main.gff3.gz.tbi +b72f8cb2487f7b1b9dd343603be009ed Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.iprscan.gff3.gz +f5d4b53ccef40f33aed192fd01b5c10b Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.iprscan.gff3.gz.tbi +64a09cc71d7b4f493388a6ea0da1cdea Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.legfed_v1_0.M65K.gfa.tsv.gz +5750576349f60c9f7e5c33c81ee536d6 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.mrna_primary.fna.gz +9f8e09705932f554f1a718560e1682e2 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.mrna_primary.fna.gz.fai +e9f1fcbe286b7003e1cf5d741ec44f7d Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.mrna_primary.fna.gz.gzi +d4d81ba9b0deddad215087b111af2235 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.mrna.fna.gz +fee2f08b48b92a384d4a9c7038ed857f Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.mrna.fna.gz.fai +1fcea5e724403186776d4c449c546241 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.mrna.fna.gz.gzi +2064325159be4a2e78d4c60808ccc4ec Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.protein_primary.faa.gz +c0de1449c9300953ccc9def70bb3bd18 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.protein_primary.faa.gz.fai +ef3b06eb0dce5849a4669821d5b61a90 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.protein_primary.faa.gz.gzi +bcd9b1df636c0a6b73ed51f1fd8f3a29 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.protein.faa.gz +52f19639ba5fca7117fada8c7896c60a Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.protein.faa.gz.fai +4bfbeaadc80dd21db27b9f679c0b71e2 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/glyma.JD17.gnm1.ann1.CLFP.protein.faa.gz.gzi +efa212fd186fe5bd4eb7114f09d80795 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/MANIFEST.JD17.gnm1.ann1.CLFP.correspondence.yml +db7954ee45d4059c805b976dba4d73c7 Glycine/max/annotations/JD17.gnm1.ann1.CLFP/MANIFEST.JD17.gnm1.ann1.CLFP.descriptions.yml +ee93a3fa2cfb6ba3dbd3d224d9030f3c Glycine/max/annotations/JD17.gnm1.ann1.CLFP/README.JD17.gnm1.ann1.CLFP.yml diff --git a/Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/CHECKSUM.JiDouNo_17.gnm1.ann1.X5PX.md5 b/Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/CHECKSUM.JiDouNo_17.gnm1.ann1.X5PX.md5 index 8a04a79d..83367111 100644 --- a/Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/CHECKSUM.JiDouNo_17.gnm1.ann1.X5PX.md5 +++ b/Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/CHECKSUM.JiDouNo_17.gnm1.ann1.X5PX.md5 @@ -1,31 +1,28 @@ -d2dba2c99cc2b46f69821d2d2f71acf0 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.protein_primary.faa.gz.gzi -abd63d2df29925e2b01ab40f3e0ce666 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.cds.fna.gz.fai -312212ae681100b5add6905143c8c085 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.feature.tsv.gz -d23d4aa641f55c5b8ce19158cbbe0a72 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.mrna.fna.gz -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.JiDouNo_17.gnm1.ann1.X5PX.txt -1ba1f1059b7a293bd48ac6f64830bbfa ./glyma.JiDouNo_17.gnm1.ann1.X5PX.iprscan.gff3.gz.tbi -09b03db95258ab8edeac8bd255f65947 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.protein.faa.gz.gzi -9872c7f97145eba6a407df0aecc12c87 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.iprscan.gff3.gz -2d3c6b898b4ce6ee861a1f3d5e4d6b02 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.gene_models_main.gff3.gz -276aee6a85f6c64c2df4b2bfe1445569 ./MANIFEST.JiDouNo_17.gnm1.ann1.X5PX.correspondence.yml -f986a24d29f2523b8d9e2158fd03e2e9 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.featid_map.tsv.gz -c61e8e350e9575e0abde5ebdb354a2b8 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.cds_primary.fna.gz.fai -9116343ec78b8aadcdf7ea83b6748992 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.mrna.fna.gz.fai -17894cf430893e125b213e5d86459588 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.cds.fna.gz -0c98efdb79dccebd4fb2c1c3a0229008 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.mrna.fna.gz.gzi -2092d40e3384b29c77677fa2fc4f0675 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.cds_primary.fna.gz.gzi -e7aa81367339060020465465568e501a ./glyma.JiDouNo_17.gnm1.ann1.X5PX.protein_primary.faa.gz -8795b65357745147d772bdcbdb186e48 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.cds_primary.fna.gz -4282e45fcfa3a20bbe6e5c2588dafcd1 ./README.JiDouNo_17.gnm1.ann1.X5PX.yml -b2e1e7b67f86e1b4ae9e7d03f4e44036 ./BUSCO/glyma.JiDouNo_17.gnm1.ann1.X5PX.busco.fabales_odb10.short_summary.txt -e5f2bb45655eaae98e24821acde61027 ./BUSCO/glyma.JiDouNo_17.gnm1.ann1.X5PX.busco.fabales_odb10.full_table.tsv.gz -1b2e2de3820c037cf47c8b419338cd04 ./BUSCO/glyma.JiDouNo_17.gnm1.ann1.X5PX.busco.fabales_odb10.short_summary.json -ccffabcd83eca3f1747de893baa507a2 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.protein.faa.gz -67b8b2073469529514f2c9b4a6dcaad4 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.protein.faa.gz.fai -bbe6a4663c5dca8c99ee7ee44f889b41 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.cds.fna.gz.gzi -228154c65c5276603f907a6e61fa1c1c ./MANIFEST.JiDouNo_17.gnm1.ann1.X5PX.descriptions.yml -af1620761a86c2b5a9f513879213cc5e ./glyma.JiDouNo_17.gnm1.ann1.X5PX.gene_models_main.bed.gz.tbi -0e13558261d9162117a1d351541c8544 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.legfed_v1_0.M65K.gfa.tsv.gz -cb9ca95b716dbdd5fe610e5c8d193b6a ./glyma.JiDouNo_17.gnm1.ann1.X5PX.gene_models_main.bed.gz -4ab0335e11a4b4ffd44146f649e96ff2 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.protein_primary.faa.gz.fai -c7989dafb3bca57f51afdc49c89f46e8 ./glyma.JiDouNo_17.gnm1.ann1.X5PX.gene_models_main.gff3.gz.tbi +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/CHANGES.JiDouNo_17.gnm1.ann1.X5PX.txt +8795b65357745147d772bdcbdb186e48 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.cds_primary.fna.gz +c61e8e350e9575e0abde5ebdb354a2b8 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.cds_primary.fna.gz.fai +2092d40e3384b29c77677fa2fc4f0675 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.cds_primary.fna.gz.gzi +17894cf430893e125b213e5d86459588 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.cds.fna.gz +abd63d2df29925e2b01ab40f3e0ce666 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.cds.fna.gz.fai +bbe6a4663c5dca8c99ee7ee44f889b41 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.cds.fna.gz.gzi +f986a24d29f2523b8d9e2158fd03e2e9 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.featid_map.tsv.gz +312212ae681100b5add6905143c8c085 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.feature.tsv.gz +a831a724d8cd662de9c9eb5d41ea57e0 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.gene_models_main.bed.gz +c34364eded96a01ffaa30d5a5b00c2b7 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.gene_models_main.bed.gz.tbi +2d3c6b898b4ce6ee861a1f3d5e4d6b02 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.gene_models_main.gff3.gz +c7989dafb3bca57f51afdc49c89f46e8 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.gene_models_main.gff3.gz.tbi +9872c7f97145eba6a407df0aecc12c87 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.iprscan.gff3.gz +1ba1f1059b7a293bd48ac6f64830bbfa Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.iprscan.gff3.gz.tbi +0e13558261d9162117a1d351541c8544 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.legfed_v1_0.M65K.gfa.tsv.gz +d23d4aa641f55c5b8ce19158cbbe0a72 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.mrna.fna.gz +9116343ec78b8aadcdf7ea83b6748992 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.mrna.fna.gz.fai +0c98efdb79dccebd4fb2c1c3a0229008 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.mrna.fna.gz.gzi +e7aa81367339060020465465568e501a Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.protein_primary.faa.gz +4ab0335e11a4b4ffd44146f649e96ff2 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.protein_primary.faa.gz.fai +d2dba2c99cc2b46f69821d2d2f71acf0 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.protein_primary.faa.gz.gzi +ccffabcd83eca3f1747de893baa507a2 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.protein.faa.gz +67b8b2073469529514f2c9b4a6dcaad4 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.protein.faa.gz.fai +09b03db95258ab8edeac8bd255f65947 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/glyma.JiDouNo_17.gnm1.ann1.X5PX.protein.faa.gz.gzi +276aee6a85f6c64c2df4b2bfe1445569 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/MANIFEST.JiDouNo_17.gnm1.ann1.X5PX.correspondence.yml +228154c65c5276603f907a6e61fa1c1c Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/MANIFEST.JiDouNo_17.gnm1.ann1.X5PX.descriptions.yml +4282e45fcfa3a20bbe6e5c2588dafcd1 Glycine/max/annotations/JiDouNo_17.gnm1.ann1.X5PX/README.JiDouNo_17.gnm1.ann1.X5PX.yml diff --git a/Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/CHECKSUM.JinDouNo_23.gnm1.ann1.SGJW.md5 b/Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/CHECKSUM.JinDouNo_23.gnm1.ann1.SGJW.md5 index b0eda474..0238eb47 100644 --- a/Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/CHECKSUM.JinDouNo_23.gnm1.ann1.SGJW.md5 +++ b/Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/CHECKSUM.JinDouNo_23.gnm1.ann1.SGJW.md5 @@ -1,31 +1,28 @@ -b60425a049c1559d3f09c94d4492975d ./glyma.JinDouNo_23.gnm1.ann1.SGJW.protein.faa.gz.gzi -6ef3d16e2f67c686a4de8bf4c246d5f7 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.gene_models_main.gff3.gz.tbi -bf1b65d8ed9dcc04ba071afb58a27314 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.cds.fna.gz.fai -9c6dda61ce7ccadc1cc5e75802139a8f ./glyma.JinDouNo_23.gnm1.ann1.SGJW.feature.tsv.gz -b87ca52f0ee11790c8717f01d5904ba8 ./BUSCO/glyma.JinDouNo_23.gnm1.ann1.SGJW.busco.fabales_odb10.full_table.tsv.gz -d9847813ebf5c3567146f5ad5d029f66 ./BUSCO/glyma.JinDouNo_23.gnm1.ann1.SGJW.busco.fabales_odb10.short_summary.txt -8a28612104dd2675243d5bac65121696 ./BUSCO/glyma.JinDouNo_23.gnm1.ann1.SGJW.busco.fabales_odb10.short_summary.json -a262098705d871d7a3fd7a543d17094d ./glyma.JinDouNo_23.gnm1.ann1.SGJW.mrna.fna.gz.gzi -c43553208343c842246c784a3a4dad3b ./glyma.JinDouNo_23.gnm1.ann1.SGJW.protein_primary.faa.gz.fai -186e51138f6d35e0f13db7bd95a6e8a1 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.iprscan.gff3.gz.tbi -5c29ab4b79ee3da687761844f21ae961 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.gene_models_main.bed.gz -df662c7bdfd022c179f2e89126dcf07c ./glyma.JinDouNo_23.gnm1.ann1.SGJW.cds_primary.fna.gz.fai -a3b4b54dee9aa899d651f58831e95678 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.featid_map.tsv.gz -a49b2608e4c801e3a0254079a13593d9 ./MANIFEST.JinDouNo_23.gnm1.ann1.SGJW.descriptions.yml -b3e926ad505bc47ec7b5203388cbc9b1 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.mrna.fna.gz -517b8feb6b89fabcfb67f550fa5e5a32 ./MANIFEST.JinDouNo_23.gnm1.ann1.SGJW.correspondence.yml -a9bf92b6519fb2244366c5faf9974298 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.cds.fna.gz -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.JinDouNo_23.gnm1.ann1.SGJW.txt -800d51bee3bea64a0fb5a98c175befa9 ./README.JinDouNo_23.gnm1.ann1.SGJW.yml -bdff1681e79aec96cd639ceb4c6e2f6b ./glyma.JinDouNo_23.gnm1.ann1.SGJW.iprscan.gff3.gz -00906123c7d6c12dec67d430352a7554 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.cds_primary.fna.gz -d707b5937fc416f9a2b6eb06f1878757 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.protein_primary.faa.gz -4430bdbbd60971d95fd7754d847e9997 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.cds_primary.fna.gz.gzi -7b84e6ab100481f13245bcae963374f8 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.gene_models_main.gff3.gz -b24f4bb429a298e5a29287bef4d81d40 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.protein_primary.faa.gz.gzi -37a248f3abc85d07a177df31081c7b38 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.mrna.fna.gz.fai -0d9338340bd34c825d7440e0ff513087 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.protein.faa.gz.fai -49616c5d62ebd5e6fd7dd4c21d01fce7 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.cds.fna.gz.gzi -b2e8bc33d695def7e9e20546bef3f810 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.gene_models_main.bed.gz.tbi -5db345837ec2ef1661b11c44643d9be0 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.protein.faa.gz -9d4edf495a14b0a4699993a92c491b14 ./glyma.JinDouNo_23.gnm1.ann1.SGJW.legfed_v1_0.M65K.gfa.tsv.gz +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/CHANGES.JinDouNo_23.gnm1.ann1.SGJW.txt +00906123c7d6c12dec67d430352a7554 Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/glyma.JinDouNo_23.gnm1.ann1.SGJW.cds_primary.fna.gz +df662c7bdfd022c179f2e89126dcf07c Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/glyma.JinDouNo_23.gnm1.ann1.SGJW.cds_primary.fna.gz.fai +4430bdbbd60971d95fd7754d847e9997 Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/glyma.JinDouNo_23.gnm1.ann1.SGJW.cds_primary.fna.gz.gzi +a9bf92b6519fb2244366c5faf9974298 Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/glyma.JinDouNo_23.gnm1.ann1.SGJW.cds.fna.gz +bf1b65d8ed9dcc04ba071afb58a27314 Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/glyma.JinDouNo_23.gnm1.ann1.SGJW.cds.fna.gz.fai +49616c5d62ebd5e6fd7dd4c21d01fce7 Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/glyma.JinDouNo_23.gnm1.ann1.SGJW.cds.fna.gz.gzi +a3b4b54dee9aa899d651f58831e95678 Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/glyma.JinDouNo_23.gnm1.ann1.SGJW.featid_map.tsv.gz +9c6dda61ce7ccadc1cc5e75802139a8f Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/glyma.JinDouNo_23.gnm1.ann1.SGJW.feature.tsv.gz +efd4a186aa0ade46ea5b18e8e3b323cf Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/glyma.JinDouNo_23.gnm1.ann1.SGJW.gene_models_main.bed.gz +0c87dd3d133ace00f2840de2a16d3671 Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/glyma.JinDouNo_23.gnm1.ann1.SGJW.gene_models_main.bed.gz.tbi +7b84e6ab100481f13245bcae963374f8 Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/glyma.JinDouNo_23.gnm1.ann1.SGJW.gene_models_main.gff3.gz +6ef3d16e2f67c686a4de8bf4c246d5f7 Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/glyma.JinDouNo_23.gnm1.ann1.SGJW.gene_models_main.gff3.gz.tbi +bdff1681e79aec96cd639ceb4c6e2f6b Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/glyma.JinDouNo_23.gnm1.ann1.SGJW.iprscan.gff3.gz +186e51138f6d35e0f13db7bd95a6e8a1 Glycine/max/annotations/JinDouNo_23.gnm1.ann1.SGJW/glyma.JinDouNo_23.gnm1.ann1.SGJW.iprscan.gff3.gz.tbi +9d4edf495a14b0a4699993a92c491b14 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-942acb8dadb831952af05e8ed69b7955 ./glyma.Jinyuan_IGA1006.gnm1.ann1.2NNX.gene_models_main.bed.gz -98e637892a3f73fa38150d9fcba37567 ./glyma.Jinyuan_IGA1006.gnm1.ann1.2NNX.gene_models_main.gff3.gz -4f411cbcb193bbd2371f7b480669a698 ./glyma.Jinyuan_IGA1006.gnm1.ann1.2NNX.iprscan.gff3.gz -4467eb0b4c89fc44b9bc3c92bb817320 ./glyma.Jinyuan_IGA1006.gnm1.ann1.2NNX.gene_models_main.bed.gz.tbi -7cf2689c8f2ad71d20f7d879cdcca009 ./glyma.Jinyuan_IGA1006.gnm1.ann1.2NNX.legfed_v1_0.M65K.gfa.tsv.gz +d15296d1dda5d2563be2f41fdff3c902 Glycine/max/annotations/Jinyuan_IGA1006.gnm1.ann1.2NNX/CHANGES.Jinyuan_IGA1006.gnm1.ann1.2NNX.txt +cc6713889dfcb932a2d4bd3a965bbad5 Glycine/max/annotations/Jinyuan_IGA1006.gnm1.ann1.2NNX/glyma.Jinyuan_IGA1006.gnm1.ann1.2NNX.cds.fna.gz +21167e00c830b965c4d0124717610539 Glycine/max/annotations/Jinyuan_IGA1006.gnm1.ann1.2NNX/glyma.Jinyuan_IGA1006.gnm1.ann1.2NNX.cds.fna.gz.fai +36a6bdf2f01591a04893af14999123ac 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Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.feature.tsv.gz +865a0eacfc05f955801cc9ce1e4cbc2f Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.gene_models_main.bed.gz +ad788fe557752545683f302aedefa2f9 Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.gene_models_main.bed.gz.tbi +3b571dfacf2c85bd009bf69aa00671d0 Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.gene_models_main.gff3.gz +5036e4470fbce43e6271ba13eb018043 Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.gene_models_main.gff3.gz.tbi +39415dcc698b541891e6abcd6ba56516 Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.iprscan.gff3.gz +7d607aec037bb076b1c40271db2f33d8 Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.iprscan.gff3.gz.tbi +629d8da1a9b98d75a19b14c3f437491d Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.legfed_v1_0.M65K.gfa.tsv.gz +a284067a9cf33290b545ade35b530be9 Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.mrna.fna.gz +ecc68707302f2d82dfd554e814e6bf06 Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.mrna.fna.gz.fai +f01071f5033b11064deb64bacac0b969 Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.mrna.fna.gz.gzi +ce41390ed0b76978fd94ab7d101b839a Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.protein_primary.faa.gz +2162735f8486d0d3892dc685835408b7 Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.protein_primary.faa.gz.fai +f590a629f3f7264fae002281127ffa22 Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.protein_primary.faa.gz.gzi +fb222717bf906fb83a8c4a92f3264d66 Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.protein.faa.gz +b4a5e9308951dda25659f3db23c9082e Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.protein.faa.gz.fai +8128bb63bb75bf6f678f5c74c493d067 Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/glyma.JuXuanNo_23.gnm1.ann1.H8PW.protein.faa.gz.gzi +cbd7aa6ff04ad995f0853fdf3224ab08 Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/MANIFEST.JuXuanNo_23.gnm1.ann1.H8PW.correspondence.yml +807a53a93539d3caafac16428bf86f31 Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/MANIFEST.JuXuanNo_23.gnm1.ann1.H8PW.descriptions.yml +203fc22a1292dcb7683ae2abab76d4ec Glycine/max/annotations/JuXuanNo_23.gnm1.ann1.H8PW/README.JuXuanNo_23.gnm1.ann1.H8PW.yml diff --git a/Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/CHECKSUM.KeShanNo_1.gnm1.ann1.2YX4.md5 b/Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/CHECKSUM.KeShanNo_1.gnm1.ann1.2YX4.md5 index ae54badb..2de9c927 100644 --- a/Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/CHECKSUM.KeShanNo_1.gnm1.ann1.2YX4.md5 +++ b/Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/CHECKSUM.KeShanNo_1.gnm1.ann1.2YX4.md5 @@ -1,31 +1,28 @@ -b3b0464ed6cc81056306edcd70760ee6 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.iprscan.gff3.gz -52fccb465a83b5dd854fa8d992b056a2 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.protein_primary.faa.gz.gzi -1f260859957effc720d1a16fb0e5ad84 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.gene_models_main.gff3.gz -694dcecc106e6a2ce6ec18401321dcb5 ./MANIFEST.KeShanNo_1.gnm1.ann1.2YX4.correspondence.yml -d9b514301d2803d0059b07edf9e87aa8 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.gene_models_main.bed.gz.tbi -be079ecc2fc9bd43d19f0b943f754c8d ./glyma.KeShanNo_1.gnm1.ann1.2YX4.legfed_v1_0.M65K.gfa.tsv.gz -ef441bae5947ef09d10311d423e421d8 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.protein.faa.gz -9ba6fdcb1563d61598d8c0ac61e597cb ./glyma.KeShanNo_1.gnm1.ann1.2YX4.cds.fna.gz.gzi -0b44d22235af374e241711d7f427817e ./README.KeShanNo_1.gnm1.ann1.2YX4.yml -0b48324e06d56122bec6726a8943415b ./glyma.KeShanNo_1.gnm1.ann1.2YX4.mrna.fna.gz.fai -2a2cd89008da316c320c5f434d9340b6 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.protein.faa.gz.gzi -3f7fb06b23eadea9284167cd4f11ee64 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.cds_primary.fna.gz.fai -a1e36e4630586812a786eb09373653a8 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.mrna.fna.gz -e560f9cec499f4abd7388cf4c6f07dff ./glyma.KeShanNo_1.gnm1.ann1.2YX4.cds_primary.fna.gz.gzi -d5e2c320ef387b571ea43243b1a7dab3 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.protein_primary.faa.gz -a41499ff1eda68e67ace47623c0d9869 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.iprscan.gff3.gz.tbi -0162dba0a4f537858028f5ad66b1a04a ./glyma.KeShanNo_1.gnm1.ann1.2YX4.protein.faa.gz.fai -21fdcba9db34fc6af4ec5ff103d0b647 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.gene_models_main.bed.gz -5afdb7c090a55ab51ddb8c483c0720cf ./MANIFEST.KeShanNo_1.gnm1.ann1.2YX4.descriptions.yml -04a62c5ffd1326b5d345c30b79321229 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.mrna.fna.gz.gzi -a83ed0735092851260e7fd9e4c73f45e ./glyma.KeShanNo_1.gnm1.ann1.2YX4.featid_map.tsv.gz -823e86e67db10d95587e234afe896df4 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.cds.fna.gz.fai -2df1e41faea665b15d29d3bc26efa2d0 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.feature.tsv.gz -c13faff239c9f6c8fd40e87febeaf35f ./glyma.KeShanNo_1.gnm1.ann1.2YX4.cds.fna.gz -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.KeShanNo_1.gnm1.ann1.2YX4.txt -5ca25ad732f070b0af5ddef7e0d4fde0 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.gene_models_main.gff3.gz.tbi -a102f1ba074ae9698e560ca2b5e6e896 ./BUSCO/glyma.KeShanNo_1.gnm1.ann1.2YX4.busco.fabales_odb10.short_summary.json -1620852461736d212e1a67e6f68c1a61 ./BUSCO/glyma.KeShanNo_1.gnm1.ann1.2YX4.busco.fabales_odb10.short_summary.txt -9de032772c5a9561bbf10ea0600c310f ./BUSCO/glyma.KeShanNo_1.gnm1.ann1.2YX4.busco.fabales_odb10.full_table.tsv.gz -e12b38d734fd568109f9b70d3b609b26 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.protein_primary.faa.gz.fai -660d9a4559eee87260049d6a670be3e5 ./glyma.KeShanNo_1.gnm1.ann1.2YX4.cds_primary.fna.gz +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/CHANGES.KeShanNo_1.gnm1.ann1.2YX4.txt +660d9a4559eee87260049d6a670be3e5 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.cds_primary.fna.gz +3f7fb06b23eadea9284167cd4f11ee64 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.cds_primary.fna.gz.fai +e560f9cec499f4abd7388cf4c6f07dff Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.cds_primary.fna.gz.gzi +c13faff239c9f6c8fd40e87febeaf35f Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.cds.fna.gz +823e86e67db10d95587e234afe896df4 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.cds.fna.gz.fai +9ba6fdcb1563d61598d8c0ac61e597cb Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.cds.fna.gz.gzi +a83ed0735092851260e7fd9e4c73f45e Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.featid_map.tsv.gz +2df1e41faea665b15d29d3bc26efa2d0 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.feature.tsv.gz +7ba94df181ebdc5bfbf256d477e3dfb6 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.gene_models_main.bed.gz +81c243854d3217a27e18ecf8b4b76523 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.gene_models_main.bed.gz.tbi +1f260859957effc720d1a16fb0e5ad84 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.gene_models_main.gff3.gz +5ca25ad732f070b0af5ddef7e0d4fde0 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.gene_models_main.gff3.gz.tbi +b3b0464ed6cc81056306edcd70760ee6 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.iprscan.gff3.gz +a41499ff1eda68e67ace47623c0d9869 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.iprscan.gff3.gz.tbi +be079ecc2fc9bd43d19f0b943f754c8d Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.legfed_v1_0.M65K.gfa.tsv.gz +a1e36e4630586812a786eb09373653a8 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.mrna.fna.gz +0b48324e06d56122bec6726a8943415b Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.mrna.fna.gz.fai +04a62c5ffd1326b5d345c30b79321229 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.mrna.fna.gz.gzi +d5e2c320ef387b571ea43243b1a7dab3 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.protein_primary.faa.gz +e12b38d734fd568109f9b70d3b609b26 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.protein_primary.faa.gz.fai +52fccb465a83b5dd854fa8d992b056a2 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.protein_primary.faa.gz.gzi +ef441bae5947ef09d10311d423e421d8 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.protein.faa.gz +0162dba0a4f537858028f5ad66b1a04a Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.protein.faa.gz.fai +2a2cd89008da316c320c5f434d9340b6 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/glyma.KeShanNo_1.gnm1.ann1.2YX4.protein.faa.gz.gzi +694dcecc106e6a2ce6ec18401321dcb5 Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/MANIFEST.KeShanNo_1.gnm1.ann1.2YX4.correspondence.yml +5afdb7c090a55ab51ddb8c483c0720cf Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/MANIFEST.KeShanNo_1.gnm1.ann1.2YX4.descriptions.yml +0b44d22235af374e241711d7f427817e Glycine/max/annotations/KeShanNo_1.gnm1.ann1.2YX4/README.KeShanNo_1.gnm1.ann1.2YX4.yml diff --git a/Glycine/max/annotations/Lee.gnm1.ann1.6NZV/CHECKSUM.Lee.gnm1.ann1.6NZV.md5 b/Glycine/max/annotations/Lee.gnm1.ann1.6NZV/CHECKSUM.Lee.gnm1.ann1.6NZV.md5 index de0e8a5c..6e04fe8d 100644 --- a/Glycine/max/annotations/Lee.gnm1.ann1.6NZV/CHECKSUM.Lee.gnm1.ann1.6NZV.md5 +++ b/Glycine/max/annotations/Lee.gnm1.ann1.6NZV/CHECKSUM.Lee.gnm1.ann1.6NZV.md5 @@ -1,37 +1,32 @@ -fe39129d2b9492f51a58b7c32f1f4566 ./glyma.Lee.gnm1.ann1.6NZV.protein_primary.faa.gz.gzi -5106f5c201d2cca36621af2243a0dd8f ./glyma.Lee.gnm1.ann1.6NZV.protein.faa.gz -8f4303fbb4c5a24e8d61e8558304edcf ./README.Lee.gnm1.ann1.6NZV.yml -a4b74dfb3dd5bc7d247dccb10d5da0a4 ./glyma.Lee.gnm1.ann1.6NZV.protein.faa.gz.fai -f71993f3c57d8221df163d506d0f636c ./glyma.Lee.gnm1.ann1.6NZV.cds.fna.gz.gzi -0c2cf3eed90d71295e701431f0c69858 ./glyma.Lee.gnm1.ann1.6NZV.gene_models.gff3.gz -237594dc4cf690b20b6e2e9d1f530826 ./glyma.Lee.gnm1.ann1.6NZV.mrna.fna.gz.fai -71429dbf4fbf08b601eba91ece70590e ./glyma.Lee.gnm1.ann1.6NZV.mrna_primary.fna.gz.fai -0799b9312614ef95b995ab520db89bd9 ./glyma.Lee.gnm1.ann1.6NZV.gene_models_main.gff3.gz.tbi -18c9109c81e9bcf86dd36bd2f5fc0b3f ./glyma.Lee.gnm1.ann1.6NZV.info_annot.txt.gz -168ff41b2ef8784ab41e7b8002388c41 ./glyma.Lee.gnm1.ann1.6NZV.protein_primary.faa.gz -b9a9c85d1ac78af61c49f49186f6aa3c ./glyma.Lee.gnm1.ann1.6NZV.cds.fna.gz -9d85d29f5f78fb918c7714c02d5afa2e ./CHANGES.Lee.gnm1.ann1.6NZV.txt -9ca723599b31e82dd6fd0f4a0a7289fe ./glyma.Lee.gnm1.ann1.6NZV.cds_primary.fna.gz.gzi -0e0d3781bd7fd14f8f22a9a715f2063f ./glyma.Lee.gnm1.ann1.6NZV.cds_primary.fna.gz -1c0471fd42a37a65f7c363c898cef961 ./MANIFEST.Lee.gnm1.ann1.6NZV.correspondence.yml -17c737bc39d501569c40b9a7eb624d62 ./BUSCO/glyma.Lee.gnm1.ann1.6NZV.busco.fabales_odb10.short_summary.txt -0c707aef7efc6ffd132a7b11ddf9474a ./BUSCO/glyma.Lee.gnm1.ann1.6NZV.busco.fabales_odb10.full_table.tsv.gz -849cdd26bab61a660ebf132f86cf2f65 ./BUSCO/glyma.Lee.gnm1.ann1.6NZV.busco.fabales_odb10.short_summary.json -33710ed78ff4ce8071e8f2e0db1a6f0c ./glyma.Lee.gnm1.ann1.6NZV.repeatmasking.gff3.gz -79881e9334b70b97174971895a9a6943 ./glyma.Lee.gnm1.ann1.6NZV.mrna.fna.gz -eec7860f6b7301c5106f93d44c28d02f ./glyma.Lee.gnm1.ann1.6NZV.gene_models.gff3.gz.tbi -9744a7b003bdd7b2d7e53cf26f12771b ./glyma.Lee.gnm1.ann1.6NZV.cds_primary.fna.gz.fai -5b3d95389a1bc28486d26cc45d85ed39 ./busco/glyma.Lee.gnm1.ann1.6NZV.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.glyma.Lee.gnm1.ann1.6NZV.protein.faa.gz_busco.txt -b0eee85b7b7cf6bfbc09a1b490b52fce ./busco/glyma.Lee.gnm1.ann1.6NZV.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.glyma.Lee.gnm1.ann1.6NZV.protein_primaryTranscript.faa.gz_busco.txt -6c1ee38e2f56edf20686e7443c797fa8 ./glyma.Lee.gnm1.ann1.6NZV.mrna_primary.fna.gz -30c74b23208742b7d4ef9f4d515a1ec7 ./glyma.Lee.gnm1.ann1.6NZV.mrna_primary.fna.gz.gzi -e846308c09981f7fe38c2e73e80ef3e6 ./glyma.Lee.gnm1.ann1.6NZV.gene_models_main.bed.gz -4ca692f6f9039a288af2a0fd6c3fda4a ./glyma.Lee.gnm1.ann1.6NZV.mrna.fna.gz.gzi -036622bdd657a4f876b449647ecb4dcd ./glyma.Lee.gnm1.ann1.6NZV.gene_models_main.gff3.gz -bd3232f736cccfc9fdfa5076fa6beb11 ./glyma.Lee.gnm1.ann1.6NZV.gene_models_exons.gff3.gz -763355b5456aa6f0e10bcb23a388bb64 ./glyma.Lee.gnm1.ann1.6NZV.cds.fna.gz.fai -647da03f99a2ea674b522b9c34ee60eb ./MANIFEST.Lee.gnm1.ann1.6NZV.descriptions.yml -eb5a295f7e36c5e53f2f28caccc68cfb ./glyma.Lee.gnm1.ann1.6NZV.protein_primary.faa.gz.fai -054e371749ddbdad7df2066dcb883afe ./glyma.Lee.gnm1.ann1.6NZV.legfed_v1_0.M65K.gfa.tsv.gz -75271561511db0e67e4dcf70cb713e54 ./glyma.Lee.gnm1.ann1.6NZV.protein.faa.gz.gzi -ad3c67713222e14c02e3a62f36460a5f ./glyma.Lee.gnm1.ann1.6NZV.gene_models_main.bed.gz.tbi +9d85d29f5f78fb918c7714c02d5afa2e Glycine/max/annotations/Lee.gnm1.ann1.6NZV/CHANGES.Lee.gnm1.ann1.6NZV.txt +0e0d3781bd7fd14f8f22a9a715f2063f Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.cds_primary.fna.gz +9744a7b003bdd7b2d7e53cf26f12771b Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.cds_primary.fna.gz.fai +9ca723599b31e82dd6fd0f4a0a7289fe Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.cds_primary.fna.gz.gzi +b9a9c85d1ac78af61c49f49186f6aa3c Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.cds.fna.gz +763355b5456aa6f0e10bcb23a388bb64 Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.cds.fna.gz.fai +f71993f3c57d8221df163d506d0f636c Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.cds.fna.gz.gzi +bd3232f736cccfc9fdfa5076fa6beb11 Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.gene_models_exons.gff3.gz +4bcd0162445b5c9982b93517dde7164c Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.gene_models_main.bed.gz +8c5cbefc2eee01a80ee14a76b6054c7c Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.gene_models_main.bed.gz.tbi +036622bdd657a4f876b449647ecb4dcd Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.gene_models_main.gff3.gz +0799b9312614ef95b995ab520db89bd9 Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.gene_models_main.gff3.gz.tbi +0c2cf3eed90d71295e701431f0c69858 Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.gene_models.gff3.gz +eec7860f6b7301c5106f93d44c28d02f Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.gene_models.gff3.gz.tbi +18c9109c81e9bcf86dd36bd2f5fc0b3f Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.info_annot.txt.gz +054e371749ddbdad7df2066dcb883afe Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.legfed_v1_0.M65K.gfa.tsv.gz +6c1ee38e2f56edf20686e7443c797fa8 Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.mrna_primary.fna.gz +71429dbf4fbf08b601eba91ece70590e Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.mrna_primary.fna.gz.fai +30c74b23208742b7d4ef9f4d515a1ec7 Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.mrna_primary.fna.gz.gzi +79881e9334b70b97174971895a9a6943 Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.mrna.fna.gz +237594dc4cf690b20b6e2e9d1f530826 Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.mrna.fna.gz.fai +4ca692f6f9039a288af2a0fd6c3fda4a Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.mrna.fna.gz.gzi +168ff41b2ef8784ab41e7b8002388c41 Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.protein_primary.faa.gz +eb5a295f7e36c5e53f2f28caccc68cfb Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.protein_primary.faa.gz.fai +fe39129d2b9492f51a58b7c32f1f4566 Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.protein_primary.faa.gz.gzi +5106f5c201d2cca36621af2243a0dd8f Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.protein.faa.gz +a4b74dfb3dd5bc7d247dccb10d5da0a4 Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.protein.faa.gz.fai +75271561511db0e67e4dcf70cb713e54 Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.protein.faa.gz.gzi +33710ed78ff4ce8071e8f2e0db1a6f0c Glycine/max/annotations/Lee.gnm1.ann1.6NZV/glyma.Lee.gnm1.ann1.6NZV.repeatmasking.gff3.gz +1c0471fd42a37a65f7c363c898cef961 Glycine/max/annotations/Lee.gnm1.ann1.6NZV/MANIFEST.Lee.gnm1.ann1.6NZV.correspondence.yml +647da03f99a2ea674b522b9c34ee60eb Glycine/max/annotations/Lee.gnm1.ann1.6NZV/MANIFEST.Lee.gnm1.ann1.6NZV.descriptions.yml +8f4303fbb4c5a24e8d61e8558304edcf Glycine/max/annotations/Lee.gnm1.ann1.6NZV/README.Lee.gnm1.ann1.6NZV.yml diff --git a/Glycine/max/annotations/Lee.gnm2.ann1.1FNT/CHECKSUM.Lee.gnm2.ann1.1FNT.md5 b/Glycine/max/annotations/Lee.gnm2.ann1.1FNT/CHECKSUM.Lee.gnm2.ann1.1FNT.md5 index 1a01cbff..ddcd1dfa 100644 --- a/Glycine/max/annotations/Lee.gnm2.ann1.1FNT/CHECKSUM.Lee.gnm2.ann1.1FNT.md5 +++ b/Glycine/max/annotations/Lee.gnm2.ann1.1FNT/CHECKSUM.Lee.gnm2.ann1.1FNT.md5 @@ -1,32 +1,29 @@ -7ae4c4f79c26543b5d64b876e435cbf6 ./glyma.Lee.gnm2.ann1.1FNT.cds_primary.fna.gz.fai -26488a8f80f1de944e4e563aeb9d1122 ./glyma.Lee.gnm2.ann1.1FNT.protein.faa.gz.gzi -835b5f88bd89c9d125f8aebdca63afc9 ./README.Lee.gnm2.ann1.1FNT.yml -682757ede960ac72154951ffa3a030ba ./glyma.Lee.gnm2.ann1.1FNT.iprscan.gff3.gz.tbi -537bda8fea985230b36f8718066fd6f7 ./glyma.Lee.gnm2.ann1.1FNT.mrna.fna.gz.gzi -ee810a3682ce5927119ff340c8550dc6 ./MANIFEST.Lee.gnm2.ann1.1FNT.descriptions.yml -0e2cce4144d6eba600ea733cfac2f361 ./glyma.Lee.gnm2.ann1.1FNT.protein_primary.faa.gz.gzi -e8dc9ed572d43aa614f09d1de4e56843 ./glyma.Lee.gnm2.ann1.1FNT.cds.fna.gz.fai -f144cb8ab87fb98c8dd748a27a4d8695 ./glyma.Lee.gnm2.ann1.1FNT.cds.fna.gz -43d3d05b87a3fea0cc491f77acdfb4ea ./glyma.Lee.gnm2.ann1.1FNT.gene_models_main.bed.gz -b173d004f99fb0fa4b012becac3feaf1 ./glyma.Lee.gnm2.ann1.1FNT.mrna_primary.fna.gz.gzi -7323e73ae37cf904023d8b1e506e3c67 ./glyma.Lee.gnm2.ann1.1FNT.mrna_primary.fna.gz.fai -b30474d9510b3cf0a604be02fc7c2694 ./BUSCO/glyma.Lee.gnm2.ann1.1FNT.busco.fabales_odb10.short_summary.txt -9d4f978c070d3c1ebcfbfc1c40eec788 ./BUSCO/glyma.Lee.gnm2.ann1.1FNT.busco.fabales_odb10.short_summary.json -1eecc215b1578f30c57b157fb967a42e ./BUSCO/glyma.Lee.gnm2.ann1.1FNT.busco.fabales_odb10.full_table.tsv.gz -bf93ab0eb11f9ddd894aa7edb223c656 ./glyma.Lee.gnm2.ann1.1FNT.iprscan.gff3.gz -2eb038a3e7c140c1ef3649905245420c ./CHANGES.Lee.gnm2.ann1.1FNT.txt -8cae9d8fb288545d25557fef1e7da1a9 ./glyma.Lee.gnm2.ann1.1FNT.mrna_primary.fna.gz -a487d8ccb523a746986cbc5100d316cd ./glyma.Lee.gnm2.ann1.1FNT.gene_models_main.gff3.gz.tbi -855f35b83d1911de119405b6ba7f6db0 ./glyma.Lee.gnm2.ann1.1FNT.gene_models_main.bed.gz.tbi -dd5b96b8187245bb67a31fc2cf68be60 ./glyma.Lee.gnm2.ann1.1FNT.legfed_v1_0.M65K.gfa.tsv.gz -1ea0aaf387b82b64f0ce0401ee0cd574 ./glyma.Lee.gnm2.ann1.1FNT.protein.faa.gz -bc785ad7ba224ad9c6667cc6b0092246 ./glyma.Lee.gnm2.ann1.1FNT.cds_primary.fna.gz -a72a4cb0fb08c1f93dfd68cf6647e625 ./glyma.Lee.gnm2.ann1.1FNT.protein_primary.faa.gz.fai -acbb4c23c12759cf3bd4b476cf8e69e4 ./glyma.Lee.gnm2.ann1.1FNT.cds.fna.gz.gzi -37cca44c7f81188c7487893d680d6c5a ./glyma.Lee.gnm2.ann1.1FNT.gene_models_main.gff3.gz -f69d2a2d260e55850ff48c8023a1bcd9 ./glyma.Lee.gnm2.ann1.1FNT.mrna.fna.gz -30dfff1a65e1c2f2e6127d554b364a98 ./glyma.Lee.gnm2.ann1.1FNT.mrna.fna.gz.fai -f60e1862f3e593abf8a7b41b6d6cc0b4 ./MANIFEST.Lee.gnm2.ann1.1FNT.corresponding.yml -7d103f81c164e8e1c398217cd6a5491c ./glyma.Lee.gnm2.ann1.1FNT.protein.faa.gz.fai -a87bc09abc43b9782a671c53bcc0eadf ./glyma.Lee.gnm2.ann1.1FNT.cds_primary.fna.gz.gzi -592716c1686e768905a2bf09a8a7731d ./glyma.Lee.gnm2.ann1.1FNT.protein_primary.faa.gz +2eb038a3e7c140c1ef3649905245420c Glycine/max/annotations/Lee.gnm2.ann1.1FNT/CHANGES.Lee.gnm2.ann1.1FNT.txt +bc785ad7ba224ad9c6667cc6b0092246 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.cds_primary.fna.gz +7ae4c4f79c26543b5d64b876e435cbf6 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.cds_primary.fna.gz.fai +a87bc09abc43b9782a671c53bcc0eadf Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.cds_primary.fna.gz.gzi +f144cb8ab87fb98c8dd748a27a4d8695 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.cds.fna.gz +e8dc9ed572d43aa614f09d1de4e56843 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.cds.fna.gz.fai +acbb4c23c12759cf3bd4b476cf8e69e4 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.cds.fna.gz.gzi +c369ee7862f3dad31cf062a04fd1aba3 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.gene_models_main.bed.gz +9ada984351cbc8aaf9ec7af528b6db92 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.gene_models_main.bed.gz.tbi +37cca44c7f81188c7487893d680d6c5a Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.gene_models_main.gff3.gz +a487d8ccb523a746986cbc5100d316cd Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.gene_models_main.gff3.gz.tbi +bf93ab0eb11f9ddd894aa7edb223c656 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.iprscan.gff3.gz +682757ede960ac72154951ffa3a030ba Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.iprscan.gff3.gz.tbi +dd5b96b8187245bb67a31fc2cf68be60 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.legfed_v1_0.M65K.gfa.tsv.gz +8cae9d8fb288545d25557fef1e7da1a9 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.mrna_primary.fna.gz +7323e73ae37cf904023d8b1e506e3c67 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.mrna_primary.fna.gz.fai +b173d004f99fb0fa4b012becac3feaf1 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.mrna_primary.fna.gz.gzi +f69d2a2d260e55850ff48c8023a1bcd9 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.mrna.fna.gz +30dfff1a65e1c2f2e6127d554b364a98 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.mrna.fna.gz.fai +537bda8fea985230b36f8718066fd6f7 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.mrna.fna.gz.gzi +592716c1686e768905a2bf09a8a7731d Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.protein_primary.faa.gz +a72a4cb0fb08c1f93dfd68cf6647e625 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.protein_primary.faa.gz.fai +0e2cce4144d6eba600ea733cfac2f361 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.protein_primary.faa.gz.gzi +1ea0aaf387b82b64f0ce0401ee0cd574 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.protein.faa.gz +7d103f81c164e8e1c398217cd6a5491c Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.protein.faa.gz.fai +26488a8f80f1de944e4e563aeb9d1122 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/glyma.Lee.gnm2.ann1.1FNT.protein.faa.gz.gzi +f60e1862f3e593abf8a7b41b6d6cc0b4 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/MANIFEST.Lee.gnm2.ann1.1FNT.corresponding.yml +ee810a3682ce5927119ff340c8550dc6 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/MANIFEST.Lee.gnm2.ann1.1FNT.descriptions.yml +835b5f88bd89c9d125f8aebdca63afc9 Glycine/max/annotations/Lee.gnm2.ann1.1FNT/README.Lee.gnm2.ann1.1FNT.yml diff --git a/Glycine/max/annotations/PI_398296.gnm1.ann1.B0XR/CHECKSUM.PI_398296.gnm1.ann1.B0XR.md5 b/Glycine/max/annotations/PI_398296.gnm1.ann1.B0XR/CHECKSUM.PI_398296.gnm1.ann1.B0XR.md5 index 13f150e0..a2ff983c 100644 --- a/Glycine/max/annotations/PI_398296.gnm1.ann1.B0XR/CHECKSUM.PI_398296.gnm1.ann1.B0XR.md5 +++ b/Glycine/max/annotations/PI_398296.gnm1.ann1.B0XR/CHECKSUM.PI_398296.gnm1.ann1.B0XR.md5 @@ -1,31 +1,28 @@ -7b34c16c2614a3801e3784026d81955d ./MANIFEST.PI_398296.gnm1.ann1.B0XR.correspondence.yml 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Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/glyma.PI_548362.gnm1.ann1.LL84.iprscan.gff3.gz.tbi +6f021121be63e94a29bd69c2d901b0e2 Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/glyma.PI_548362.gnm1.ann1.LL84.legfed_v1_0.M65K.gfa.tsv.gz +be41b157873ca48dc7a6551b9c8c0ec1 Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/glyma.PI_548362.gnm1.ann1.LL84.mrna.fna.gz +9548823ceb146d60ab63cf2629d47fbe Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/glyma.PI_548362.gnm1.ann1.LL84.mrna.fna.gz.fai +f428736d646c9db2604dd1b1887211de Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/glyma.PI_548362.gnm1.ann1.LL84.mrna.fna.gz.gzi +058ae2848c914fb2392b2848c8a5f28b Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/glyma.PI_548362.gnm1.ann1.LL84.protein_primary.faa.gz +a4dbd9c63424de9d8bf4cda09c63a470 Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/glyma.PI_548362.gnm1.ann1.LL84.protein_primary.faa.gz.fai +734d6530253a48e4ae651c65c76881ce Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/glyma.PI_548362.gnm1.ann1.LL84.protein_primary.faa.gz.gzi +7bf190f5564d349d08cdfc3c6181ca0f Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/glyma.PI_548362.gnm1.ann1.LL84.protein.faa.gz +470f516f031239107ea21ed66609c40a Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/glyma.PI_548362.gnm1.ann1.LL84.protein.faa.gz.fai +cb37e7b15e6d80d191af71414a33ce7f Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/glyma.PI_548362.gnm1.ann1.LL84.protein.faa.gz.gzi +650dac9369a0483f3a86a81078f44409 Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/MANIFEST.PI_548362.gnm1.ann1.LL84.correspondence.yml +da90b39ec3963212a17675262831f1cf Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/MANIFEST.PI_548362.gnm1.ann1.LL84.descriptions.yml +1c3ce8e167ead4249791a0ea6b41b87b Glycine/max/annotations/PI_548362.gnm1.ann1.LL84/README.PI_548362.gnm1.ann1.LL84.yml diff --git a/Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/CHECKSUM.QiHuangNo_34.gnm1.ann1.WHRV.md5 b/Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/CHECKSUM.QiHuangNo_34.gnm1.ann1.WHRV.md5 index e325f67e..9815207e 100644 --- a/Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/CHECKSUM.QiHuangNo_34.gnm1.ann1.WHRV.md5 +++ b/Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/CHECKSUM.QiHuangNo_34.gnm1.ann1.WHRV.md5 @@ -1,31 +1,28 @@ -7d55af7213e4fa719a99ab192bb905e3 ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.cds.fna.gz -e29bc3a78bbef4d5d5e2c61e1ef26387 ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.cds.fna.gz.fai -760f938beb3a05758089143017875571 ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.cds_primary.fna.gz -bef747dab3738024432043bae2349d60 ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.feature.tsv.gz -75bb4c76f706c2730696cbbfa7669922 ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.protein_primary.faa.gz.gzi -6b3d637fa88e7f709a1054480ed57ccf ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.protein.faa.gz.fai -ffee39890b40a70d87236c71d0c7fb5d ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.mrna.fna.gz.gzi -03843a9f1282b35aa951a3895e461a51 ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.mrna.fna.gz -f4ba05a7aa1ed924fc09266a5383aebf ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.protein_primary.faa.gz -6903d7b4f5aa25800e4db3d3cb6e46bb ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.cds_primary.fna.gz.gzi -60d042900051de704f1cb6b3d25933b4 ./MANIFEST.QiHuangNo_34.gnm1.ann1.WHRV.descriptions.yml -8066f17c5998ca9ea0ed5c674ecf7ee9 ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.featid_map.tsv.gz -b7e94f414da383c12cef032107679499 ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.cds_primary.fna.gz.fai -818367c7325af2725b366688aaa093b6 ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.legfed_v1_0.M65K.gfa.tsv.gz -1e865450952ccba2bf9b0ed99aea1d0b ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.gene_models_main.bed.gz.tbi -7003a7835732506a44ed7b8f83900591 ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.mrna.fna.gz.fai -ad4def16005f21345b515d6db4330dbf ./BUSCO/glyma.QiHuangNo_34.gnm1.ann1.WHRV.busco.fabales_odb10.short_summary.json -b1db9c140e79c3a684688438d00a2449 ./BUSCO/glyma.QiHuangNo_34.gnm1.ann1.WHRV.busco.fabales_odb10.full_table.tsv.gz -abc3786d7035cdb67f9ac818f003f194 ./BUSCO/glyma.QiHuangNo_34.gnm1.ann1.WHRV.busco.fabales_odb10.short_summary.txt -4f373a3ba6b973b59664716024469f98 ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.protein.faa.gz.gzi -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.QiHuangNo_34.gnm1.ann1.WHRV.txt -ed1bbd938e29ab5f896bae3d822615ca ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.gene_models_main.gff3.gz.tbi -80f658f7cf9cc01b8f4670b9ad070e56 ./MANIFEST.QiHuangNo_34.gnm1.ann1.WHRV.correspondence.yml -c7d823b4120b6a1d73f04b5795a88c47 ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.gene_models_main.gff3.gz -a50cbb5448a6b8d019609f71971684ce ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.gene_models_main.bed.gz -df1ab98233337eddf5d6c8e0ec340f64 ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.iprscan.gff3.gz.tbi -47e6119aa7b07dbf7bd33f1ecb7ec56c ./README.QiHuangNo_34.gnm1.ann1.WHRV.yml -b6e20d4abea289e875c23436e91bc197 ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.cds.fna.gz.gzi -9f34b7cae658f042fd6f7840ec0a10bc ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.protein_primary.faa.gz.fai -2d61d26ea77c635844534823212c4e8f ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.iprscan.gff3.gz -603de299b633678a243fa292ceacd6c6 ./glyma.QiHuangNo_34.gnm1.ann1.WHRV.protein.faa.gz +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/CHANGES.QiHuangNo_34.gnm1.ann1.WHRV.txt +760f938beb3a05758089143017875571 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.cds_primary.fna.gz +b7e94f414da383c12cef032107679499 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.cds_primary.fna.gz.fai +6903d7b4f5aa25800e4db3d3cb6e46bb Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.cds_primary.fna.gz.gzi +7d55af7213e4fa719a99ab192bb905e3 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.cds.fna.gz +e29bc3a78bbef4d5d5e2c61e1ef26387 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.cds.fna.gz.fai +b6e20d4abea289e875c23436e91bc197 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.cds.fna.gz.gzi +8066f17c5998ca9ea0ed5c674ecf7ee9 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.featid_map.tsv.gz +bef747dab3738024432043bae2349d60 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.feature.tsv.gz +fe7e9fe7fdba172fffc1a552925c3ace Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.gene_models_main.bed.gz +54eb7df45d883c060af6eec0197f0ff2 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.gene_models_main.bed.gz.tbi +c7d823b4120b6a1d73f04b5795a88c47 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.gene_models_main.gff3.gz +ed1bbd938e29ab5f896bae3d822615ca Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.gene_models_main.gff3.gz.tbi +2d61d26ea77c635844534823212c4e8f Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.iprscan.gff3.gz +df1ab98233337eddf5d6c8e0ec340f64 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.iprscan.gff3.gz.tbi +818367c7325af2725b366688aaa093b6 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.legfed_v1_0.M65K.gfa.tsv.gz +03843a9f1282b35aa951a3895e461a51 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.mrna.fna.gz +7003a7835732506a44ed7b8f83900591 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.mrna.fna.gz.fai +ffee39890b40a70d87236c71d0c7fb5d Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.mrna.fna.gz.gzi +f4ba05a7aa1ed924fc09266a5383aebf Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.protein_primary.faa.gz +9f34b7cae658f042fd6f7840ec0a10bc Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.protein_primary.faa.gz.fai +75bb4c76f706c2730696cbbfa7669922 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.protein_primary.faa.gz.gzi +603de299b633678a243fa292ceacd6c6 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.protein.faa.gz +6b3d637fa88e7f709a1054480ed57ccf Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.protein.faa.gz.fai +4f373a3ba6b973b59664716024469f98 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/glyma.QiHuangNo_34.gnm1.ann1.WHRV.protein.faa.gz.gzi +80f658f7cf9cc01b8f4670b9ad070e56 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/MANIFEST.QiHuangNo_34.gnm1.ann1.WHRV.correspondence.yml +60d042900051de704f1cb6b3d25933b4 Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/MANIFEST.QiHuangNo_34.gnm1.ann1.WHRV.descriptions.yml +47e6119aa7b07dbf7bd33f1ecb7ec56c Glycine/max/annotations/QiHuangNo_34.gnm1.ann1.WHRV/README.QiHuangNo_34.gnm1.ann1.WHRV.yml diff --git a/Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/CHECKSUM.ShiShengChangYe.gnm1.ann1.VLGS.md5 b/Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/CHECKSUM.ShiShengChangYe.gnm1.ann1.VLGS.md5 index e63b5340..76e43cf9 100644 --- a/Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/CHECKSUM.ShiShengChangYe.gnm1.ann1.VLGS.md5 +++ b/Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/CHECKSUM.ShiShengChangYe.gnm1.ann1.VLGS.md5 @@ -1,31 +1,28 @@ -1f1a5a9b3ffd0fea417a63a970ca0da7 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.cds_primary.fna.gz -602ba442b515abbce0d1b4d21b10eafb ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.protein_primary.faa.gz -bbf481da6e7c6f94b111f45262769120 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.cds_primary.fna.gz.gzi -ab4bd780dd69d8371babf5f6f86af918 ./MANIFEST.ShiShengChangYe.gnm1.ann1.VLGS.descriptions.yml -8a424e328fc341ec15f9916c3eff0475 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.protein_primary.faa.gz.gzi -b902593852ae14e0ee662ea8f41f19b9 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.iprscan.gff3.gz -10faddd0732f6455c4749133fc8f78c0 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.mrna.fna.gz -c18aa7aec21c4d3a709d6a9f0ac37efb ./BUSCO/glyma.ShiShengChangYe.gnm1.ann1.VLGS.busco.fabales_odb10.short_summary.json -219b9516807848aff0540d851385bb4d ./BUSCO/glyma.ShiShengChangYe.gnm1.ann1.VLGS.busco.fabales_odb10.short_summary.txt -c081f6b5ca9602fcff3c36c5bd6bcc4e ./BUSCO/glyma.ShiShengChangYe.gnm1.ann1.VLGS.busco.fabales_odb10.full_table.tsv.gz -12211326d47f8d54b1280f4af6be5dba ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.protein.faa.gz.fai -0b510b25e2a8a76bed1c78658a271c0b ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.protein.faa.gz -56de83bc4c2a917d34b0ddc57073891d ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.mrna.fna.gz.fai -e8f3825e2ebee422c17690d396cb6cbf ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.cds.fna.gz.gzi -4329db43504a247a15384a9efe3b3d75 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.mrna.fna.gz.gzi -41e81c3b3d20466cf9646cb747894a39 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.gene_models_main.gff3.gz -67cac6ce2e1d6099e7d4749bcc3a9cf4 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.feature.tsv.gz -88319e460b601ad575391d634aecee01 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.cds.fna.gz.fai -7949ee68e7395ba7af2726dfea6e8634 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.legfed_v1_0.M65K.gfa.tsv.gz -5edba3edf3d469daf199f7262dac1382 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.gene_models_main.bed.gz.tbi -737572a85246f765d84eed78685bc440 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.iprscan.gff3.gz.tbi -2ac202fd5913a01cf1e2176b531bba88 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.protein.faa.gz.gzi -18465728292f0b471e8e7bddb58ea56c ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.gene_models_main.bed.gz -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.ShiShengChangYe.gnm1.ann1.VLGS.txt -ed9234d4d63dba318400f2e24334d5e2 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.protein_primary.faa.gz.fai -24b6ebdc62f861d2050aa70b16b70810 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.featid_map.tsv.gz -b631baa1dff7794cf779a93a99545301 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.gene_models_main.gff3.gz.tbi -6c158097725b285977e8bbb9a0381aab ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.cds_primary.fna.gz.fai -0ab18d69e2157168076e72ff3c0cbb18 ./glyma.ShiShengChangYe.gnm1.ann1.VLGS.cds.fna.gz -d8ce9a79636fb2040cddac2619c88e6d ./MANIFEST.ShiShengChangYe.gnm1.ann1.VLGS.correspondence.yml -fac25c360210fbd43ce7a63c10e8b1a6 ./README.ShiShengChangYe.gnm1.ann1.VLGS.yml +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/CHANGES.ShiShengChangYe.gnm1.ann1.VLGS.txt +1f1a5a9b3ffd0fea417a63a970ca0da7 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.cds_primary.fna.gz +6c158097725b285977e8bbb9a0381aab Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.cds_primary.fna.gz.fai +bbf481da6e7c6f94b111f45262769120 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.cds_primary.fna.gz.gzi +0ab18d69e2157168076e72ff3c0cbb18 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.cds.fna.gz +88319e460b601ad575391d634aecee01 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.cds.fna.gz.fai +e8f3825e2ebee422c17690d396cb6cbf Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.cds.fna.gz.gzi +24b6ebdc62f861d2050aa70b16b70810 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.featid_map.tsv.gz +67cac6ce2e1d6099e7d4749bcc3a9cf4 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.feature.tsv.gz +8809ee731047fff43c776b41db6d858e Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.gene_models_main.bed.gz +bdffe1150a6a354e3ee6087f2150d825 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.gene_models_main.bed.gz.tbi +41e81c3b3d20466cf9646cb747894a39 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.gene_models_main.gff3.gz +b631baa1dff7794cf779a93a99545301 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.gene_models_main.gff3.gz.tbi +b902593852ae14e0ee662ea8f41f19b9 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.iprscan.gff3.gz +737572a85246f765d84eed78685bc440 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.iprscan.gff3.gz.tbi +7949ee68e7395ba7af2726dfea6e8634 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.legfed_v1_0.M65K.gfa.tsv.gz +10faddd0732f6455c4749133fc8f78c0 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.mrna.fna.gz +56de83bc4c2a917d34b0ddc57073891d Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.mrna.fna.gz.fai +4329db43504a247a15384a9efe3b3d75 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.mrna.fna.gz.gzi +602ba442b515abbce0d1b4d21b10eafb Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.protein_primary.faa.gz +ed9234d4d63dba318400f2e24334d5e2 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.protein_primary.faa.gz.fai +8a424e328fc341ec15f9916c3eff0475 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.protein_primary.faa.gz.gzi +0b510b25e2a8a76bed1c78658a271c0b Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.protein.faa.gz +12211326d47f8d54b1280f4af6be5dba Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.protein.faa.gz.fai +2ac202fd5913a01cf1e2176b531bba88 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/glyma.ShiShengChangYe.gnm1.ann1.VLGS.protein.faa.gz.gzi +d8ce9a79636fb2040cddac2619c88e6d Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/MANIFEST.ShiShengChangYe.gnm1.ann1.VLGS.correspondence.yml +ab4bd780dd69d8371babf5f6f86af918 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/MANIFEST.ShiShengChangYe.gnm1.ann1.VLGS.descriptions.yml +fac25c360210fbd43ce7a63c10e8b1a6 Glycine/max/annotations/ShiShengChangYe.gnm1.ann1.VLGS/README.ShiShengChangYe.gnm1.ann1.VLGS.yml diff --git a/Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/CHECKSUM.TieFengNo_18.gnm1.ann1.7GR4.md5 b/Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/CHECKSUM.TieFengNo_18.gnm1.ann1.7GR4.md5 index 9df61686..f6700dea 100644 --- a/Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/CHECKSUM.TieFengNo_18.gnm1.ann1.7GR4.md5 +++ b/Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/CHECKSUM.TieFengNo_18.gnm1.ann1.7GR4.md5 @@ -1,31 +1,28 @@ -fdf029d55d981b05008a657d9ac0f160 ./glyma.TieFengNo_18.gnm1.ann1.7GR4.cds.fna.gz.gzi -c227db10911dc97fee77610d04a26ac7 ./glyma.TieFengNo_18.gnm1.ann1.7GR4.protein.faa.gz.gzi -0921dac05669efda03a247249f45057f ./MANIFEST.TieFengNo_18.gnm1.ann1.7GR4.descriptions.yml -5ab2ad408a8ec6f4d6262474b0d208e6 ./glyma.TieFengNo_18.gnm1.ann1.7GR4.protein.faa.gz -1c9c03c44e38a7a90a549ebdf150c34f ./glyma.TieFengNo_18.gnm1.ann1.7GR4.gene_models_main.bed.gz.tbi -686b98f0cf48b692d8244a9b82de0323 ./glyma.TieFengNo_18.gnm1.ann1.7GR4.protein_primary.faa.gz.gzi -c52c0735bb8b8a651434294cdc2aa800 ./glyma.TieFengNo_18.gnm1.ann1.7GR4.legfed_v1_0.M65K.gfa.tsv.gz -a193551f3c14090c046db44da8206151 ./glyma.TieFengNo_18.gnm1.ann1.7GR4.gene_models_main.gff3.gz -2f12b0cd0d226a1134f6cd8b89acb5b7 ./glyma.TieFengNo_18.gnm1.ann1.7GR4.mrna.fna.gz -160d6ff39a4078e18c41f1dcd615cc86 ./glyma.TieFengNo_18.gnm1.ann1.7GR4.gene_models_main.gff3.gz.tbi -c9b3f3573a699bc7270c5081153ef77e ./glyma.TieFengNo_18.gnm1.ann1.7GR4.cds.fna.gz -0440ee04f56bff524e1a7772321154a9 ./BUSCO/glyma.TieFengNo_18.gnm1.ann1.7GR4.busco.fabales_odb10.short_summary.json -0ab17407bd0151d9ca1aef47fa8c4922 ./BUSCO/glyma.TieFengNo_18.gnm1.ann1.7GR4.busco.fabales_odb10.short_summary.txt -4f1ea466989ec860aee0b461b60e0707 ./BUSCO/glyma.TieFengNo_18.gnm1.ann1.7GR4.busco.fabales_odb10.full_table.tsv.gz -b80b9d3a9e0a6dc4afa2fb34ae243cf3 ./glyma.TieFengNo_18.gnm1.ann1.7GR4.mrna.fna.gz.gzi -ff4e6ba6ecf76eebd5795ed5d639d7df ./glyma.TieFengNo_18.gnm1.ann1.7GR4.cds_primary.fna.gz.fai -bf4c4c904be730020ea60722753d4d70 ./glyma.TieFengNo_18.gnm1.ann1.7GR4.cds_primary.fna.gz.gzi -abfbb3f7d9f50e3d6575f68469ccd1af ./glyma.TieFengNo_18.gnm1.ann1.7GR4.gene_models_main.bed.gz -74c4f8526a3ce31ece7de7c847dfe0ae ./glyma.TieFengNo_18.gnm1.ann1.7GR4.protein_primary.faa.gz -2699a4c3c1592ec5d6759cebbfadd010 ./README.TieFengNo_18.gnm1.ann1.7GR4.yml -f5a168f8680c853392f654e45cfea02f ./glyma.TieFengNo_18.gnm1.ann1.7GR4.mrna.fna.gz.fai -14adede759b6db4d2d84e7eaa5b1786a ./glyma.TieFengNo_18.gnm1.ann1.7GR4.cds_primary.fna.gz -e895aae710a4d0e98233b326b199b3b5 ./glyma.TieFengNo_18.gnm1.ann1.7GR4.iprscan.gff3.gz.tbi -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.TieFengNo_18.gnm1.ann1.7GR4.txt -eed336e5c29c8240025a58cc1d8da239 ./glyma.TieFengNo_18.gnm1.ann1.7GR4.protein_primary.faa.gz.fai -a09a8271d45f2b9ddafa26f6cd1ac3fa ./glyma.TieFengNo_18.gnm1.ann1.7GR4.iprscan.gff3.gz -d580ec591d44b854f0f4d2f09b9046d6 ./glyma.TieFengNo_18.gnm1.ann1.7GR4.featid_map.tsv.gz -af24ab702024b9c593df6c7eca074e41 ./glyma.TieFengNo_18.gnm1.ann1.7GR4.cds.fna.gz.fai -dda9f86ba9d17cd932ca43b9977d34ad ./glyma.TieFengNo_18.gnm1.ann1.7GR4.feature.tsv.gz -831c2f225527283b3893f2f68f6d1baf ./MANIFEST.TieFengNo_18.gnm1.ann1.7GR4.correspondence.yml -718a9618ee3b597daf225043dfedfd7b ./glyma.TieFengNo_18.gnm1.ann1.7GR4.protein.faa.gz.fai +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/CHANGES.TieFengNo_18.gnm1.ann1.7GR4.txt +14adede759b6db4d2d84e7eaa5b1786a Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.cds_primary.fna.gz +ff4e6ba6ecf76eebd5795ed5d639d7df Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.cds_primary.fna.gz.fai +bf4c4c904be730020ea60722753d4d70 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.cds_primary.fna.gz.gzi +c9b3f3573a699bc7270c5081153ef77e Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.cds.fna.gz +af24ab702024b9c593df6c7eca074e41 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.cds.fna.gz.fai +fdf029d55d981b05008a657d9ac0f160 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.cds.fna.gz.gzi +d580ec591d44b854f0f4d2f09b9046d6 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.featid_map.tsv.gz +dda9f86ba9d17cd932ca43b9977d34ad Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.feature.tsv.gz +968064e926ab3af5d93106a6c1159496 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.gene_models_main.bed.gz +d58b5469870ceadcc2ed33bd1c7de879 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.gene_models_main.bed.gz.tbi +a193551f3c14090c046db44da8206151 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.gene_models_main.gff3.gz +160d6ff39a4078e18c41f1dcd615cc86 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.gene_models_main.gff3.gz.tbi +a09a8271d45f2b9ddafa26f6cd1ac3fa Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.iprscan.gff3.gz +e895aae710a4d0e98233b326b199b3b5 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.iprscan.gff3.gz.tbi +c52c0735bb8b8a651434294cdc2aa800 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.legfed_v1_0.M65K.gfa.tsv.gz +2f12b0cd0d226a1134f6cd8b89acb5b7 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.mrna.fna.gz +f5a168f8680c853392f654e45cfea02f Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.mrna.fna.gz.fai +b80b9d3a9e0a6dc4afa2fb34ae243cf3 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.mrna.fna.gz.gzi +74c4f8526a3ce31ece7de7c847dfe0ae Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.protein_primary.faa.gz +eed336e5c29c8240025a58cc1d8da239 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.protein_primary.faa.gz.fai +686b98f0cf48b692d8244a9b82de0323 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.protein_primary.faa.gz.gzi +5ab2ad408a8ec6f4d6262474b0d208e6 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.protein.faa.gz +718a9618ee3b597daf225043dfedfd7b Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.protein.faa.gz.fai +c227db10911dc97fee77610d04a26ac7 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/glyma.TieFengNo_18.gnm1.ann1.7GR4.protein.faa.gz.gzi +831c2f225527283b3893f2f68f6d1baf Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/MANIFEST.TieFengNo_18.gnm1.ann1.7GR4.correspondence.yml +0921dac05669efda03a247249f45057f Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/MANIFEST.TieFengNo_18.gnm1.ann1.7GR4.descriptions.yml +2699a4c3c1592ec5d6759cebbfadd010 Glycine/max/annotations/TieFengNo_18.gnm1.ann1.7GR4/README.TieFengNo_18.gnm1.ann1.7GR4.yml diff --git a/Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/CHECKSUM.TieJiaSiLiHuang.gnm1.ann1.W70Z.md5 b/Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/CHECKSUM.TieJiaSiLiHuang.gnm1.ann1.W70Z.md5 index 19731ba6..d25a633e 100644 --- a/Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/CHECKSUM.TieJiaSiLiHuang.gnm1.ann1.W70Z.md5 +++ b/Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/CHECKSUM.TieJiaSiLiHuang.gnm1.ann1.W70Z.md5 @@ -1,31 +1,28 @@ -f60e544bfb90b69b9762991073f9fb21 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.mrna.fna.gz -5a91a9075bdfd54ecb4168ba133239b7 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.feature.tsv.gz -b85ba598c66ba6cf174aa38fa5299bad ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.cds.fna.gz.fai -5e1308ad85b24f00d6929a85ca660d76 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.gene_models_main.bed.gz -aaa6268cedb69280687412536e4448ee ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.gene_models_main.gff3.gz -ca4d1b73c2df2bd852a77451ff9fa0e8 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.cds_primary.fna.gz.fai -567183daaa2ff4721fd089ffdb80f294 ./README.TieJiaSiLiHuang.gnm1.ann1.W70Z.yml -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.TieJiaSiLiHuang.gnm1.ann1.W70Z.txt -3590eccedd6a739c263162887d83e191 ./BUSCO/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.busco.fabales_odb10.short_summary.txt -db6f724c4107189617718be4ff61f935 ./BUSCO/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.busco.fabales_odb10.full_table.tsv.gz -95b4ed3f7bbdf702aad5d914b857744b ./BUSCO/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.busco.fabales_odb10.short_summary.json -ff2beb9c32b8af84791e45435f9e20b0 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.protein.faa.gz.fai -0d70ac057bc67ba74c6c8296ef928031 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.protein_primary.faa.gz.gzi -ed20d5cfe4e4519e86646a6b62b1401c ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.gene_models_main.gff3.gz.tbi -d227279d8ac4f2c5cd966c0495864372 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.mrna.fna.gz.gzi -ad80c93edbe1d501b733beef85a64314 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.cds_primary.fna.gz -a111504c43473bda4dc37b3ba2056f7f ./MANIFEST.TieJiaSiLiHuang.gnm1.ann1.W70Z.descriptions.yml -4ae76d026b02870ebfe352636e63bec0 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.legfed_v1_0.M65K.gfa.tsv.gz -d08be13073aec5a44f01f09b1cebc3f2 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.gene_models_main.bed.gz.tbi -31d1c93d5f7b7015dead3b4b9f3ee742 ./MANIFEST.TieJiaSiLiHuang.gnm1.ann1.W70Z.correspondence.yml -65279e5f1a0b8c727bd46ebde59be5b5 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.mrna.fna.gz.fai -a46adafd1c3e1c10ec6bc44b46aa76a9 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.protein_primary.faa.gz.fai -4b504b81222ff60e79cdb65de22bfe36 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.featid_map.tsv.gz -83d9063ea2f956a566623b94bf6a6f7f ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.protein.faa.gz.gzi -d17661c2a74106a63a51697a67017103 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.protein_primary.faa.gz -d1955bb08bb206e62e4d92791d8c3909 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.iprscan.gff3.gz.tbi -1926ce5193359255cebe99ed2b0a40c0 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.cds_primary.fna.gz.gzi -e19ae2df11a0c6fde68a35f9282dcf4b ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.iprscan.gff3.gz -6217aeaf07370f996aa58b6a6a8ac205 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.protein.faa.gz -4ad680e792d46866f1f08f1f5e05d1eb ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.cds.fna.gz -3a038199ee06dd1652636ea8e9ddfc92 ./glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.cds.fna.gz.gzi +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/CHANGES.TieJiaSiLiHuang.gnm1.ann1.W70Z.txt +ad80c93edbe1d501b733beef85a64314 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.cds_primary.fna.gz +ca4d1b73c2df2bd852a77451ff9fa0e8 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.cds_primary.fna.gz.fai +1926ce5193359255cebe99ed2b0a40c0 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.cds_primary.fna.gz.gzi +4ad680e792d46866f1f08f1f5e05d1eb Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.cds.fna.gz +b85ba598c66ba6cf174aa38fa5299bad Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.cds.fna.gz.fai +3a038199ee06dd1652636ea8e9ddfc92 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.cds.fna.gz.gzi +4b504b81222ff60e79cdb65de22bfe36 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.featid_map.tsv.gz +5a91a9075bdfd54ecb4168ba133239b7 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.feature.tsv.gz +ddeaf982de84515e7a71352863dea004 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.gene_models_main.bed.gz +3b9152ca92511f04aff67291c2df754e Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.gene_models_main.bed.gz.tbi +aaa6268cedb69280687412536e4448ee Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.gene_models_main.gff3.gz +ed20d5cfe4e4519e86646a6b62b1401c Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.gene_models_main.gff3.gz.tbi +e19ae2df11a0c6fde68a35f9282dcf4b Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.iprscan.gff3.gz +d1955bb08bb206e62e4d92791d8c3909 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.iprscan.gff3.gz.tbi +4ae76d026b02870ebfe352636e63bec0 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.legfed_v1_0.M65K.gfa.tsv.gz +f60e544bfb90b69b9762991073f9fb21 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.mrna.fna.gz +65279e5f1a0b8c727bd46ebde59be5b5 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.mrna.fna.gz.fai +d227279d8ac4f2c5cd966c0495864372 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.mrna.fna.gz.gzi +d17661c2a74106a63a51697a67017103 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.protein_primary.faa.gz +a46adafd1c3e1c10ec6bc44b46aa76a9 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.protein_primary.faa.gz.fai +0d70ac057bc67ba74c6c8296ef928031 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.protein_primary.faa.gz.gzi +6217aeaf07370f996aa58b6a6a8ac205 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.protein.faa.gz +ff2beb9c32b8af84791e45435f9e20b0 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.protein.faa.gz.fai +83d9063ea2f956a566623b94bf6a6f7f Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/glyma.TieJiaSiLiHuang.gnm1.ann1.W70Z.protein.faa.gz.gzi +31d1c93d5f7b7015dead3b4b9f3ee742 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/MANIFEST.TieJiaSiLiHuang.gnm1.ann1.W70Z.correspondence.yml +a111504c43473bda4dc37b3ba2056f7f Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/MANIFEST.TieJiaSiLiHuang.gnm1.ann1.W70Z.descriptions.yml +567183daaa2ff4721fd089ffdb80f294 Glycine/max/annotations/TieJiaSiLiHuang.gnm1.ann1.W70Z/README.TieJiaSiLiHuang.gnm1.ann1.W70Z.yml diff --git a/Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/CHECKSUM.TongShanTianEDan.gnm1.ann1.56XW.md5 b/Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/CHECKSUM.TongShanTianEDan.gnm1.ann1.56XW.md5 index be499524..d6a8c7eb 100644 --- a/Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/CHECKSUM.TongShanTianEDan.gnm1.ann1.56XW.md5 +++ b/Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/CHECKSUM.TongShanTianEDan.gnm1.ann1.56XW.md5 @@ -1,31 +1,28 @@ -270490946c3e079dd2c87716369fd218 ./MANIFEST.TongShanTianEDan.gnm1.ann1.56XW.correspondence.yml -e682882ccf7213a11ee7817bb7bfa672 ./glyma.TongShanTianEDan.gnm1.ann1.56XW.mrna.fna.gz -f3c67bb71770a7d6d12ed3d76cf51204 ./glyma.TongShanTianEDan.gnm1.ann1.56XW.protein.faa.gz -012e53ef8aceee33ac46d47fdc95c6a0 ./glyma.TongShanTianEDan.gnm1.ann1.56XW.legfed_v1_0.M65K.gfa.tsv.gz -b091a398f4be2ba5b73199c55db909a5 ./glyma.TongShanTianEDan.gnm1.ann1.56XW.cds.fna.gz.gzi -b0d25ac01e0b55c030a9878315e67d56 ./glyma.TongShanTianEDan.gnm1.ann1.56XW.gene_models_main.bed.gz.tbi -4e7ad5d62cb3e9dc80a7b932a74dfc00 ./README.TongShanTianEDan.gnm1.ann1.56XW.yml -8b800e250b85786487a9e662705f66f6 ./glyma.TongShanTianEDan.gnm1.ann1.56XW.protein_primary.faa.gz.fai -fd33dc68eac0aab1e1e0f85aa0e7272a ./glyma.TongShanTianEDan.gnm1.ann1.56XW.protein.faa.gz.gzi -37563fe971c855c89cdde6b3820fc27a ./glyma.TongShanTianEDan.gnm1.ann1.56XW.cds_primary.fna.gz.fai -84a3a00ab3a7f45863dbccfe77d0f62d ./glyma.TongShanTianEDan.gnm1.ann1.56XW.gene_models_main.bed.gz -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.TongShanTianEDan.gnm1.ann1.56XW.txt -5624381d54c3a5ddd5178b94d8ea08e2 ./glyma.TongShanTianEDan.gnm1.ann1.56XW.mrna.fna.gz.gzi -7c33471a94a446b0d5bfbb8a8b9f3281 ./glyma.TongShanTianEDan.gnm1.ann1.56XW.mrna.fna.gz.fai -77ac5856dc25d90ea6d81d021864cdb6 ./glyma.TongShanTianEDan.gnm1.ann1.56XW.gene_models_main.gff3.gz -9ecb2939476423943aba81c0f1a315fd ./BUSCO/glyma.TongShanTianEDan.gnm1.ann1.56XW.busco.fabales_odb10.short_summary.txt -690b826c10051d5e9662076d822204b1 ./BUSCO/glyma.TongShanTianEDan.gnm1.ann1.56XW.busco.fabales_odb10.short_summary.json -09bf6e51e442d53cebbd9556dc7d7dff ./BUSCO/glyma.TongShanTianEDan.gnm1.ann1.56XW.busco.fabales_odb10.full_table.tsv.gz -42c42cc08f4ebebd81880ab9bb8ae69d ./glyma.TongShanTianEDan.gnm1.ann1.56XW.cds_primary.fna.gz.gzi -e8c8ddb19949d059f931c924c5792323 ./glyma.TongShanTianEDan.gnm1.ann1.56XW.featid_map.tsv.gz -f24ac587c8426c3b52aab67bd5611766 ./glyma.TongShanTianEDan.gnm1.ann1.56XW.protein_primary.faa.gz -479762b14b89c6c688c3b4296c6151cf ./glyma.TongShanTianEDan.gnm1.ann1.56XW.gene_models_main.gff3.gz.tbi -97d36e21d62785c9c826c753551e4f12 ./glyma.TongShanTianEDan.gnm1.ann1.56XW.protein.faa.gz.fai -8190dbeaa76f6ac2d6283e0091aeed0f ./glyma.TongShanTianEDan.gnm1.ann1.56XW.iprscan.gff3.gz.tbi -67e89adc2199fcc5f77dc134b09331b7 ./glyma.TongShanTianEDan.gnm1.ann1.56XW.protein_primary.faa.gz.gzi -79bb4aba8dd9559dc47cf1327c45f08f ./glyma.TongShanTianEDan.gnm1.ann1.56XW.feature.tsv.gz -672ee58f7cb5a37fc1b759ac0ee04a78 ./glyma.TongShanTianEDan.gnm1.ann1.56XW.cds.fna.gz.fai -7b7574d786f0383454187ebf7fd1729b ./glyma.TongShanTianEDan.gnm1.ann1.56XW.iprscan.gff3.gz -ae87bd7241dcb1e8e41dfb0423d0e0ab ./MANIFEST.TongShanTianEDan.gnm1.ann1.56XW.descriptions.yml -3611a3f1d43eb4c15f516f58bbc9ab1d ./glyma.TongShanTianEDan.gnm1.ann1.56XW.cds.fna.gz -8be8022a67b52aef2ab27d1d0ffb0cad ./glyma.TongShanTianEDan.gnm1.ann1.56XW.cds_primary.fna.gz +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/CHANGES.TongShanTianEDan.gnm1.ann1.56XW.txt +8be8022a67b52aef2ab27d1d0ffb0cad Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.cds_primary.fna.gz +37563fe971c855c89cdde6b3820fc27a Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.cds_primary.fna.gz.fai +42c42cc08f4ebebd81880ab9bb8ae69d Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.cds_primary.fna.gz.gzi +3611a3f1d43eb4c15f516f58bbc9ab1d Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.cds.fna.gz +672ee58f7cb5a37fc1b759ac0ee04a78 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.cds.fna.gz.fai +b091a398f4be2ba5b73199c55db909a5 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.cds.fna.gz.gzi +e8c8ddb19949d059f931c924c5792323 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.featid_map.tsv.gz +79bb4aba8dd9559dc47cf1327c45f08f Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.feature.tsv.gz +737511e75af49c6e6e6cd2c1a51ac306 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.gene_models_main.bed.gz +f47142e4b849e28156cfd3384775c99f Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.gene_models_main.bed.gz.tbi +77ac5856dc25d90ea6d81d021864cdb6 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.gene_models_main.gff3.gz +479762b14b89c6c688c3b4296c6151cf Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.gene_models_main.gff3.gz.tbi +7b7574d786f0383454187ebf7fd1729b Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.iprscan.gff3.gz +8190dbeaa76f6ac2d6283e0091aeed0f Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.iprscan.gff3.gz.tbi +012e53ef8aceee33ac46d47fdc95c6a0 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.legfed_v1_0.M65K.gfa.tsv.gz +e682882ccf7213a11ee7817bb7bfa672 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.mrna.fna.gz +7c33471a94a446b0d5bfbb8a8b9f3281 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.mrna.fna.gz.fai +5624381d54c3a5ddd5178b94d8ea08e2 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.mrna.fna.gz.gzi +f24ac587c8426c3b52aab67bd5611766 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.protein_primary.faa.gz +8b800e250b85786487a9e662705f66f6 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.protein_primary.faa.gz.fai +67e89adc2199fcc5f77dc134b09331b7 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.protein_primary.faa.gz.gzi +f3c67bb71770a7d6d12ed3d76cf51204 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.protein.faa.gz +97d36e21d62785c9c826c753551e4f12 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.protein.faa.gz.fai +fd33dc68eac0aab1e1e0f85aa0e7272a Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/glyma.TongShanTianEDan.gnm1.ann1.56XW.protein.faa.gz.gzi +270490946c3e079dd2c87716369fd218 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/MANIFEST.TongShanTianEDan.gnm1.ann1.56XW.correspondence.yml +ae87bd7241dcb1e8e41dfb0423d0e0ab Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/MANIFEST.TongShanTianEDan.gnm1.ann1.56XW.descriptions.yml +4e7ad5d62cb3e9dc80a7b932a74dfc00 Glycine/max/annotations/TongShanTianEDan.gnm1.ann1.56XW/README.TongShanTianEDan.gnm1.ann1.56XW.yml diff --git a/Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/CHECKSUM.WanDouNo_28.gnm1.ann1.NLYP.md5 b/Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/CHECKSUM.WanDouNo_28.gnm1.ann1.NLYP.md5 index 1efac709..e833e497 100644 --- a/Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/CHECKSUM.WanDouNo_28.gnm1.ann1.NLYP.md5 +++ b/Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/CHECKSUM.WanDouNo_28.gnm1.ann1.NLYP.md5 @@ -1,31 +1,28 @@ -bebdfae6cfe002869a9964da28d2b486 ./glyma.WanDouNo_28.gnm1.ann1.NLYP.protein.faa.gz -04aa117a8ff8d2c047907715132795a2 ./BUSCO/glyma.WanDouNo_28.gnm1.ann1.NLYP.busco.fabales_odb10.short_summary.json -387477b55eb72418bb296cdcd111cffb ./BUSCO/glyma.WanDouNo_28.gnm1.ann1.NLYP.busco.fabales_odb10.short_summary.txt -8a25bf50970c68286f013e4140e245e5 ./BUSCO/glyma.WanDouNo_28.gnm1.ann1.NLYP.busco.fabales_odb10.full_table.tsv.gz -cea2cfadeae1fcdbac68cc1dae3e5450 ./glyma.WanDouNo_28.gnm1.ann1.NLYP.cds_primary.fna.gz.fai -bdf2dab4bd9555cc044dd1993ce7fba6 ./glyma.WanDouNo_28.gnm1.ann1.NLYP.cds.fna.gz.gzi -75190e42bc6c9382f32c76521265015c ./glyma.WanDouNo_28.gnm1.ann1.NLYP.mrna.fna.gz.fai -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.WanDouNo_28.gnm1.ann1.NLYP.txt -8abe5f2c60f283cc20651f6b514fd4f7 ./README.WanDouNo_28.gnm1.ann1.NLYP.yml -aed73a9cf41dac3375e70cd1c8a77acc ./glyma.WanDouNo_28.gnm1.ann1.NLYP.cds.fna.gz -fba946271bc1ea8a55bcc383de569a1f ./glyma.WanDouNo_28.gnm1.ann1.NLYP.protein.faa.gz.gzi -a41267afc26ed8f3422f4dc358eea638 ./MANIFEST.WanDouNo_28.gnm1.ann1.NLYP.descriptions.yml -92610ba21e7c915ec8a87e85cf288023 ./glyma.WanDouNo_28.gnm1.ann1.NLYP.iprscan.gff3.gz -29d16fcbd5c8fabd98d12869bcf2ae07 ./glyma.WanDouNo_28.gnm1.ann1.NLYP.protein_primary.faa.gz.gzi -08d9e5961d56c7135a50656d3e46040e ./glyma.WanDouNo_28.gnm1.ann1.NLYP.gene_models_main.bed.gz -3d8dd3e1ebef03abd76352e7a43c69c7 ./glyma.WanDouNo_28.gnm1.ann1.NLYP.protein_primary.faa.gz.fai -45118ec0d08c03b703f0edc01f8b4b28 ./glyma.WanDouNo_28.gnm1.ann1.NLYP.gene_models_main.gff3.gz -451ed49990ab737c38e0505ef016dbbf ./glyma.WanDouNo_28.gnm1.ann1.NLYP.protein.faa.gz.fai -7353997fbea8b33609368e771bd2d20c ./MANIFEST.WanDouNo_28.gnm1.ann1.NLYP.correspondence.yml -9e2ff3cdf03f5544d3bc5dfbe1c700ef ./glyma.WanDouNo_28.gnm1.ann1.NLYP.gene_models_main.gff3.gz.tbi -5a00c4d14db3703cdc662a20f994ff36 ./glyma.WanDouNo_28.gnm1.ann1.NLYP.iprscan.gff3.gz.tbi -0da30d04a0ff7af26b080e410dd8e31b ./glyma.WanDouNo_28.gnm1.ann1.NLYP.mrna.fna.gz.gzi -61bb2ad9af85292c6d170398908732d0 ./glyma.WanDouNo_28.gnm1.ann1.NLYP.cds_primary.fna.gz -e198b777f9a6eb1a685e6380c93427c3 ./glyma.WanDouNo_28.gnm1.ann1.NLYP.gene_models_main.bed.gz.tbi -e742ac41822fe38e806e5a0cb98bd4fc ./glyma.WanDouNo_28.gnm1.ann1.NLYP.protein_primary.faa.gz -3e485541da9f5e763a5ae3983bd93be5 ./glyma.WanDouNo_28.gnm1.ann1.NLYP.feature.tsv.gz -713e342a9476a04d7a143d1f10e0b7cf ./glyma.WanDouNo_28.gnm1.ann1.NLYP.cds.fna.gz.fai -32192e6c5819b79e0b6a0b5b1529bf20 ./glyma.WanDouNo_28.gnm1.ann1.NLYP.legfed_v1_0.M65K.gfa.tsv.gz -02783c5980186792716fc4df8cdb7d49 ./glyma.WanDouNo_28.gnm1.ann1.NLYP.featid_map.tsv.gz -279974c64d8b63c3e0869aa5e0d53de3 ./glyma.WanDouNo_28.gnm1.ann1.NLYP.cds_primary.fna.gz.gzi -d476df2ad3611c9fa64aa3ad52a03c07 ./glyma.WanDouNo_28.gnm1.ann1.NLYP.mrna.fna.gz +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/CHANGES.WanDouNo_28.gnm1.ann1.NLYP.txt +61bb2ad9af85292c6d170398908732d0 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.cds_primary.fna.gz +cea2cfadeae1fcdbac68cc1dae3e5450 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.cds_primary.fna.gz.fai +279974c64d8b63c3e0869aa5e0d53de3 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.cds_primary.fna.gz.gzi +aed73a9cf41dac3375e70cd1c8a77acc Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.cds.fna.gz +713e342a9476a04d7a143d1f10e0b7cf Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.cds.fna.gz.fai +bdf2dab4bd9555cc044dd1993ce7fba6 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.cds.fna.gz.gzi +02783c5980186792716fc4df8cdb7d49 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.featid_map.tsv.gz +3e485541da9f5e763a5ae3983bd93be5 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.feature.tsv.gz +b013a487430bcfcf1c0760ae29b40df8 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.gene_models_main.bed.gz +4e299e1cedb385e80d1f48cc5ebb6f89 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.gene_models_main.bed.gz.tbi +45118ec0d08c03b703f0edc01f8b4b28 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.gene_models_main.gff3.gz +9e2ff3cdf03f5544d3bc5dfbe1c700ef Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.gene_models_main.gff3.gz.tbi +92610ba21e7c915ec8a87e85cf288023 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.iprscan.gff3.gz +5a00c4d14db3703cdc662a20f994ff36 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.iprscan.gff3.gz.tbi +32192e6c5819b79e0b6a0b5b1529bf20 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.legfed_v1_0.M65K.gfa.tsv.gz +d476df2ad3611c9fa64aa3ad52a03c07 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.mrna.fna.gz +75190e42bc6c9382f32c76521265015c Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.mrna.fna.gz.fai +0da30d04a0ff7af26b080e410dd8e31b Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.mrna.fna.gz.gzi +e742ac41822fe38e806e5a0cb98bd4fc Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.protein_primary.faa.gz +3d8dd3e1ebef03abd76352e7a43c69c7 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.protein_primary.faa.gz.fai +29d16fcbd5c8fabd98d12869bcf2ae07 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.protein_primary.faa.gz.gzi +bebdfae6cfe002869a9964da28d2b486 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.protein.faa.gz +451ed49990ab737c38e0505ef016dbbf Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.protein.faa.gz.fai +fba946271bc1ea8a55bcc383de569a1f Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/glyma.WanDouNo_28.gnm1.ann1.NLYP.protein.faa.gz.gzi +7353997fbea8b33609368e771bd2d20c Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/MANIFEST.WanDouNo_28.gnm1.ann1.NLYP.correspondence.yml +a41267afc26ed8f3422f4dc358eea638 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/MANIFEST.WanDouNo_28.gnm1.ann1.NLYP.descriptions.yml +8abe5f2c60f283cc20651f6b514fd4f7 Glycine/max/annotations/WanDouNo_28.gnm1.ann1.NLYP/README.WanDouNo_28.gnm1.ann1.NLYP.yml diff --git a/Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/CHECKSUM.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.md5 b/Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/CHECKSUM.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.md5 index 95042a0d..d95e6673 100644 --- a/Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/CHECKSUM.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.md5 +++ b/Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/CHECKSUM.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.md5 @@ -1,23 +1,20 @@ -a31b2ac3fa0f3c267a5f3cab63201fea ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.gene_models_main.bed.gz -2e0304b04e1ea378ce9957feb0722733 ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.cds.fna.gz.fai -1fc218130e8680bf9febfdcae0f8d7e2 ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.mrna.fna.gz.gzi -475b48c1c82ccd3a100ccb586a3c652e ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.gene_models_main.gff3.gz.tbi -d86436bfa89b2d1c1e245192a88add66 ./README.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.yml -9329444b39c0e9432a9e7ef08e6d6530 ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.mrna.fna.gz -e74a75f12bd340e229b837de50be08ae ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.protein.faa.gz.gzi -27d8146fdaee3c1390f8a8e456c005ea ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.gene_models_main.gff3.gz -e81d099bb18210abc889776de717664a ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.legfed_v1_0.M65K.gfa.tsv.gz -c782ff1a6192665fc79636e6fd52f407 ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.iprscan.gff3.gz -ec18d1a5b050702be1ad954c7852ba7b ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.gene_models_main.bed.gz.tbi -a835a6f84de3017cd61f70918e7ceaf3 ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.cds.fna.gz -6673d15a1c9e6a29b861c13ec4ca007c ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.protein.faa.gz.fai -0b3ef2ac6fb1fb7b0144ced59be4606b ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.mrna.fna.gz.fai -26c1837d919370c3a7a95eacb31ed0a8 ./MANIFEST.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.descriptions.yml -b66e74b23a33ba1364a9edb5374058d9 ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.iprscan.gff3.gz.tbi -9fb4b7e6565c6f613c0548066e617112 ./BUSCO/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.busco.fabales_odb10.full_table.tsv.gz -916675e275e0040a6f9ca5a46f0dfb10 ./BUSCO/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.busco.fabales_odb10.short_summary.txt -9b3898360fcc7e46412ad48339f058d9 ./BUSCO/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.busco.fabales_odb10.short_summary.json -93db1b923063c9ca43df94e376babae7 ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.cds.fna.gz.gzi -87238203f041cd5db1437ce5bfa75758 ./glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.protein.faa.gz -bb45a9fde59bae862e2b7581577d30ac ./CHANGES.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.txt -f3c8a9cb8ac77e6b1583e76c76ec7ff6 ./MANIFEST.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.correspondence.yml +bb45a9fde59bae862e2b7581577d30ac Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/CHANGES.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.txt +a835a6f84de3017cd61f70918e7ceaf3 Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.cds.fna.gz +2e0304b04e1ea378ce9957feb0722733 Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.cds.fna.gz.fai +93db1b923063c9ca43df94e376babae7 Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.cds.fna.gz.gzi +86dceba2ab95cd1629bf2c785852f5e2 Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.gene_models_main.bed.gz +4dbe0bcd91a47ce4ad661e27168015cf Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.gene_models_main.bed.gz.tbi +27d8146fdaee3c1390f8a8e456c005ea Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.gene_models_main.gff3.gz +475b48c1c82ccd3a100ccb586a3c652e Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.gene_models_main.gff3.gz.tbi +c782ff1a6192665fc79636e6fd52f407 Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.iprscan.gff3.gz +b66e74b23a33ba1364a9edb5374058d9 Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.iprscan.gff3.gz.tbi +e81d099bb18210abc889776de717664a Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.legfed_v1_0.M65K.gfa.tsv.gz +9329444b39c0e9432a9e7ef08e6d6530 Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.mrna.fna.gz +0b3ef2ac6fb1fb7b0144ced59be4606b Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.mrna.fna.gz.fai +1fc218130e8680bf9febfdcae0f8d7e2 Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.mrna.fna.gz.gzi +87238203f041cd5db1437ce5bfa75758 Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.protein.faa.gz +6673d15a1c9e6a29b861c13ec4ca007c Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.protein.faa.gz.fai +e74a75f12bd340e229b837de50be08ae Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/glyma.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.protein.faa.gz.gzi +f3c8a9cb8ac77e6b1583e76c76ec7ff6 Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/MANIFEST.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.correspondence.yml +26c1837d919370c3a7a95eacb31ed0a8 Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/MANIFEST.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.descriptions.yml +d86436bfa89b2d1c1e245192a88add66 Glycine/max/annotations/Wenfeng7_IGA1001.gnm1.ann1.ZK5W/README.Wenfeng7_IGA1001.gnm1.ann1.ZK5W.yml diff --git a/Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/CHECKSUM.Wm82.gnm1.ann1.DvBy.md5 b/Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/CHECKSUM.Wm82.gnm1.ann1.DvBy.md5 index 2a5d3d99..b821d894 100644 --- a/Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/CHECKSUM.Wm82.gnm1.ann1.DvBy.md5 +++ b/Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/CHECKSUM.Wm82.gnm1.ann1.DvBy.md5 @@ -1,36 +1,30 @@ -85ae492d1f83a561c5c4e35b00764ab0 ./glyma.Wm82.gnm1.ann1.DvBy.legfed_v1_0.M65K.gfa.tsv.gz -117759827026aa1c7d6306d713a1ccae ./glyma.Wm82.gnm1.ann1.DvBy.gene_models_main.bed.gz.tbi -fc7767ae04ff1ea5b780d7008ce90a71 ./glyma.Wm82.gnm1.ann1.DvBy.cds.fna.gz.fai -0825cd2807ba3530cfe2d0aee3492d1e ./glyma.Wm82.gnm1.ann1.DvBy.cds_primary.fna.gz -4ae82e2c5af37f9525eca3c6842d87bb ./glyma.Wm82.gnm1.ann1.DvBy.protein_primary.faa.gz.gzi -9160a61d94ca6994db4ce37fc73258f0 ./glyma.Wm82.gnm1.ann1.DvBy.mrna.fna.gz -2edfed288d367f444410f9d805b68dd7 ./glyma.Wm82.gnm1.ann1.DvBy.gene_models_main.bed.gz -af5b8b399fb151d0847f5c04147be1ac ./MANIFEST.Wm82.gnm1.ann1.DvBy.descriptions.yml -5f675cb0984ebdaa29d365b20523ab9e ./glyma.Wm82.gnm1.ann1.DvBy.mrna_primary.fna.gz.gzi -c98c8307cad6508b87bc9219949d4beb ./glyma.Wm82.gnm1.ann1.DvBy.gene_models_main.gff3.gz -fc9d527ba73180bc8ebf24e9f5952990 ./glyma.Wm82.gnm1.ann1.DvBy.mrna.fna.gz.fai -898b86a1b48f2cf466c6f09ed11e08dc ./glyma.Wm82.gnm1.ann1.DvBy.legfed_v1_0.M65K.pathway.tsv.gz -fd59afae0e365cba31d05a1bc8370da9 ./glyma.Wm82.gnm1.ann1.DvBy.mrna_primary.fna.gz -f9521259f67be986092417719c00fc0f ./CHANGES.Wm82.gnm1.ann1.DvBy.txt -406799bcf2916f86c30a055fb6bca939 ./busco/glyma.Wm82.gnm1.ann1.DvBy.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.glyma.Wm82.gnm1.ann1.DvBy.protein.faa.gz_busco.txt -d62047a0982face2d316961ea9b311d3 ./busco/glyma.Wm82.gnm1.ann1.DvBy.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.glyma.Wm82.gnm1.ann1.DvBy.protein_primaryTranscript.faa.gz_busco.txt -279b6cfb94238168d7f49cdb84e04fcc ./glyma.Wm82.gnm1.ann1.DvBy.cds.fna.gz -3473abe0265bb727c50e3c6ef6593598 ./glyma.Wm82.gnm1.ann1.DvBy.protein_primary.faa.gz -7020e6fce81fbca6a1d9773c4bf51798 ./glyma.Wm82.gnm1.ann1.DvBy.cds_primary.fna.gz.gzi -af7f99cbcda57f8756bb19b1cbc9d898 ./glyma.Wm82.gnm1.ann1.DvBy.gene_models_main.gff3.gz.tbi -22e01a9de354c014d1bfd2bb0aba397c ./glyma.Wm82.gnm1.ann1.DvBy.protein.faa.gz.fai -3aa0585578094d4030be9f695aa80f60 ./glyma.Wm82.gnm1.ann1.DvBy.iprscan.gff3.gz -341e14a53e8bbd9c21c702f5a7fb10b1 ./BUSCO/glyma.Wm82.gnm1.ann1.DvBy.busco.fabales_odb10.short_summary.json -5bfc13ef137d301ac3f23acf23f60ae7 ./BUSCO/glyma.Wm82.gnm1.ann1.DvBy.busco.fabales_odb10.full_table.tsv.gz -1046c374b82cc648d8d1920693a5a40c ./BUSCO/glyma.Wm82.gnm1.ann1.DvBy.busco.fabales_odb10.short_summary.txt -ab9c248ee31f590f2cb885c037e151e2 ./glyma.Wm82.gnm1.ann1.DvBy.protein.faa.gz.gzi -94590666f02110110996af46114aa016 ./glyma.Wm82.gnm1.ann1.DvBy.info_annot.txt.gz -83192c37dd47b1b5de065262bff58cd5 ./glyma.Wm82.gnm1.ann1.DvBy.cds_primary.fna.gz.fai -866f5d13477c814e868d7850f9bdfaec ./MANIFEST.Wm82.gnm1.ann1.DvBy.correspondence.yml -eabb27cc4dd888ac15f30dad03ddb255 ./README.Wm82.gnm1.ann1.DvBy.yml -4eb7188732b5023ed71755ece45998e9 ./glyma.Wm82.gnm1.ann1.DvBy.mrna.fna.gz.gzi -66a2fc2b9e835a672ad22ff60385bcaf ./glyma.Wm82.gnm1.ann1.DvBy.protein_primary.faa.gz.fai -86f29c3466a6854fdcfdb609c687d4a8 ./glyma.Wm82.gnm1.ann1.DvBy.mrna_primary.fna.gz.fai -38684b131f3149a2f99fe889eb25049b ./glyma.Wm82.gnm1.ann1.DvBy.iprscan.gff3.gz.tbi -cca109c5b25cad986f7e4dd717068ddd ./glyma.Wm82.gnm1.ann1.DvBy.cds.fna.gz.gzi -6cb0f65c7fe21bd64e5fe92e4393b432 ./glyma.Wm82.gnm1.ann1.DvBy.protein.faa.gz +f9521259f67be986092417719c00fc0f Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/CHANGES.Wm82.gnm1.ann1.DvBy.txt +0825cd2807ba3530cfe2d0aee3492d1e Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.cds_primary.fna.gz +83192c37dd47b1b5de065262bff58cd5 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.cds_primary.fna.gz.fai +7020e6fce81fbca6a1d9773c4bf51798 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.cds_primary.fna.gz.gzi +279b6cfb94238168d7f49cdb84e04fcc Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.cds.fna.gz +fc7767ae04ff1ea5b780d7008ce90a71 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.cds.fna.gz.fai +cca109c5b25cad986f7e4dd717068ddd Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.cds.fna.gz.gzi +1a258a8db60470a1314c66ee4a2a6d8a Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.gene_models_main.bed.gz +58e475c19b60502d15a12bb3eedfa5f9 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.gene_models_main.bed.gz.tbi +c98c8307cad6508b87bc9219949d4beb Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.gene_models_main.gff3.gz +af7f99cbcda57f8756bb19b1cbc9d898 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.gene_models_main.gff3.gz.tbi +94590666f02110110996af46114aa016 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.info_annot.txt.gz +3aa0585578094d4030be9f695aa80f60 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.iprscan.gff3.gz +38684b131f3149a2f99fe889eb25049b Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.iprscan.gff3.gz.tbi +85ae492d1f83a561c5c4e35b00764ab0 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.legfed_v1_0.M65K.gfa.tsv.gz +fd59afae0e365cba31d05a1bc8370da9 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.mrna_primary.fna.gz +86f29c3466a6854fdcfdb609c687d4a8 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.mrna_primary.fna.gz.fai +5f675cb0984ebdaa29d365b20523ab9e Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.mrna_primary.fna.gz.gzi +9160a61d94ca6994db4ce37fc73258f0 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.mrna.fna.gz +fc9d527ba73180bc8ebf24e9f5952990 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.mrna.fna.gz.fai +4eb7188732b5023ed71755ece45998e9 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.mrna.fna.gz.gzi +3473abe0265bb727c50e3c6ef6593598 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.protein_primary.faa.gz +66a2fc2b9e835a672ad22ff60385bcaf Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.protein_primary.faa.gz.fai +4ae82e2c5af37f9525eca3c6842d87bb Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.protein_primary.faa.gz.gzi +6cb0f65c7fe21bd64e5fe92e4393b432 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.protein.faa.gz +22e01a9de354c014d1bfd2bb0aba397c Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.protein.faa.gz.fai +ab9c248ee31f590f2cb885c037e151e2 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/glyma.Wm82.gnm1.ann1.DvBy.protein.faa.gz.gzi +866f5d13477c814e868d7850f9bdfaec Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/MANIFEST.Wm82.gnm1.ann1.DvBy.correspondence.yml +af5b8b399fb151d0847f5c04147be1ac Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/MANIFEST.Wm82.gnm1.ann1.DvBy.descriptions.yml +eabb27cc4dd888ac15f30dad03ddb255 Glycine/max/annotations/Wm82.gnm1.ann1.DvBy/README.Wm82.gnm1.ann1.DvBy.yml diff --git a/Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/CHECKSUM.Wm82.gnm2.ann1.RVB6.md5 b/Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/CHECKSUM.Wm82.gnm2.ann1.RVB6.md5 index 716a1bdb..0d53dafc 100644 --- a/Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/CHECKSUM.Wm82.gnm2.ann1.RVB6.md5 +++ b/Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/CHECKSUM.Wm82.gnm2.ann1.RVB6.md5 @@ -1,40 +1,35 @@ -cd686c6bb8d6fe423bc151c535bc7c9c ./glyma.Wm82.gnm2.ann1.RVB6.mrna.fna.gz.gzi -8cde2b3e5e1f421ca0f1109fa5193ef6 ./glyma.Wm82.gnm2.ann1.RVB6.gene_models_main.bed.gz -b7db377764e51aa005f13a98f4ba17cc ./glyma.Wm82.gnm2.ann1.RVB6.mrna_primary.fna.gz.gzi -33834c38642c08b5319072ee727cba44 ./glyma.Wm82.gnm2.ann1.RVB6.cds.fna.gz.gzi -055d97ad06d4a9d69e78a2ec4fac3459 ./glyma.Wm82.gnm2.ann1.RVB6.markers.gff3.gz -f6accbd2ca5a95c8f979e81be7848537 ./glyma.Wm82.gnm2.ann1.RVB6.protein_primary.faa.gz -2004066a9455a0a5911e885603b6411d ./busco/glyma.Wm82.gnm2.ann1.RVB6.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.glyma.Wm82.gnm2.ann1.RVB6.protein.faa.gz_busco.txt -7b116aef0a556a47f99612856ba6cf48 ./busco/glyma.Wm82.gnm2.ann1.RVB6.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.glyma.Wm82.gnm2.ann1.RVB6.protein_primaryTranscript.faa.gz_busco.txt -d4bc053a7695910e98c9fe740234c9ea ./glyma.Wm82.gnm2.ann1.RVB6.cds_primary.fna.gz.gzi -6d5ea7a30b80c07336d73aa1ad4a76f4 ./glyma.Wm82.gnm2.ann1.RVB6.cds.fna.gz -7e122b8151d55485982e453e2118cc8b ./glyma.Wm82.gnm2.ann1.RVB6.protein.faa.gz -5d07d9bab4d68c51e3f19f90420d9d95 ./README.Wm82.gnm2.ann1.RVB6.yml -3e65918e211a4f609c68a27136aa75d7 ./glyma.Wm82.gnm2.ann1.RVB6.protein_primary.faa.gz.gzi -d76e408e99bd0f68bf6ea1a15a2e85ac ./glyma.Wm82.gnm2.ann1.RVB6.info_gene_annot.txt.gz -b352c08c83c2c102f977df9a1de38044 ./MANIFEST.Wm82.gnm2.ann1.RVB6.descriptions.yml -2f9243e0bf6f9f86cae993ae5e3a13d7 ./glyma.Wm82.gnm2.ann1.RVB6.synonym.txt.gz -0fbab90169178950a9796ade5e697c3b ./glyma.Wm82.gnm2.ann1.RVB6.legfed_v1_0.M65K.gfa.tsv.gz -3ede956dc130df155e684ed7db6e7f7f ./glyma.Wm82.gnm2.ann1.RVB6.repeatmasked_assembly_v2.0.gff3.gz -354f7209b0e2dc28f64565f3a5880cc5 ./glyma.Wm82.gnm2.ann1.RVB6.protein.faa.gz.gzi -799f4051e8ccc9abd1a1dc96017f6bd8 ./glyma.Wm82.gnm2.ann1.RVB6.gene_models_main.bed.gz.tbi -19b833e43e2b6b8f5c07d52497dc48db ./glyma.Wm82.gnm2.ann1.RVB6.gene_models_main.gff3.gz -f3a535164d45c7563c9e96c46dcfd264 ./glyma.Wm82.gnm2.ann1.RVB6.protein.faa.gz.fai -83a691e8eaea0aa4abe11bcf3047f178 ./original_data_usage_policy.txt -7fa21679915e2f4fa35395582e928830 ./glyma.Wm82.gnm2.ann1.RVB6.protein_primary.faa.gz.fai -c49a8452fd513b5ebc77d7bf5730d831 ./MANIFEST.Wm82.gnm2.ann1.RVB6.correspondence.yml -3ae39a05e49f8d25e27a21aa6f4848a1 ./glyma.Wm82.gnm2.ann1.RVB6.mrna.fna.gz -2a56c62a738f3ef2011650033d491abc ./glyma.Wm82.gnm2.ann1.RVB6.mrna_primary.fna.gz -1fca7eda87c14d40801787d9da25f6e5 ./glyma.Wm82.gnm2.ann1.RVB6.cds_primary.fna.gz -bc86ca0426b50bb3d0b53d7c0ad90ec4 ./glyma.Wm82.gnm2.ann1.RVB6.cds.fna.gz.fai -1870912c74ca5935669a3464b89d6c0c ./glyma.Wm82.gnm2.ann1.RVB6.gene.gff3.gz -6046fd239da8731c053fda9c6662ffa8 ./glyma.Wm82.gnm2.ann1.RVB6.locus_mrna_name_map.txt.gz -4f853b1cde293a0b62633b28a30bd9b6 ./glyma.Wm82.gnm2.ann1.RVB6.cds_primary.fna.gz.fai -767b1105e13e592eaefd9f00d176295f ./glyma.Wm82.gnm2.ann1.RVB6.mrna.fna.gz.fai -c20f861f2c5c090ef975d1092c1afd7d ./CHANGES.Wm82.gnm2.ann1.RVB6.txt -ade7b72ada31ae759ac1b0a450c39a5f ./glyma.Wm82.gnm2.ann1.RVB6.gene_models_main.gff3.gz.tbi -93e0dd750b415876e909baf3e2ce0b91 ./BUSCO/glyma.Wm82.gnm2.ann1.RVB6.busco.fabales_odb10.short_summary.json -1010e5d5a7495f65d1ee9ce6f2b7618d ./BUSCO/glyma.Wm82.gnm2.ann1.RVB6.busco.fabales_odb10.full_table.tsv.gz -7edf908648e17871bbf7792c315b0c64 ./BUSCO/glyma.Wm82.gnm2.ann1.RVB6.busco.fabales_odb10.short_summary.txt -e85f99a3c61e94f62e7f558ea1040f1f ./glyma.Wm82.gnm2.ann1.RVB6.mrna_primary.fna.gz.fai -4c4888707562400db2d1c4fba4ca8bda ./glyma.Wm82.gnm2.ann1.RVB6.info_annot.txt.gz +c20f861f2c5c090ef975d1092c1afd7d Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/CHANGES.Wm82.gnm2.ann1.RVB6.txt +1fca7eda87c14d40801787d9da25f6e5 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.cds_primary.fna.gz +4f853b1cde293a0b62633b28a30bd9b6 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.cds_primary.fna.gz.fai +d4bc053a7695910e98c9fe740234c9ea Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.cds_primary.fna.gz.gzi +6d5ea7a30b80c07336d73aa1ad4a76f4 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.cds.fna.gz +bc86ca0426b50bb3d0b53d7c0ad90ec4 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.cds.fna.gz.fai +33834c38642c08b5319072ee727cba44 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.cds.fna.gz.gzi +22d28c27af88cbf1f2f86de1cadc0381 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.gene_models_main.bed.gz +836f5e569dd5a7ea5bd461dd238f5273 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.gene_models_main.bed.gz.tbi +19b833e43e2b6b8f5c07d52497dc48db Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.gene_models_main.gff3.gz +ade7b72ada31ae759ac1b0a450c39a5f Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.gene_models_main.gff3.gz.tbi +1870912c74ca5935669a3464b89d6c0c Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.gene.gff3.gz +4c4888707562400db2d1c4fba4ca8bda Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.info_annot.txt.gz +d76e408e99bd0f68bf6ea1a15a2e85ac Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.info_gene_annot.txt.gz +0fbab90169178950a9796ade5e697c3b Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.legfed_v1_0.M65K.gfa.tsv.gz +6046fd239da8731c053fda9c6662ffa8 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.locus_mrna_name_map.txt.gz +055d97ad06d4a9d69e78a2ec4fac3459 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.markers.gff3.gz +2a56c62a738f3ef2011650033d491abc Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.mrna_primary.fna.gz +e85f99a3c61e94f62e7f558ea1040f1f Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.mrna_primary.fna.gz.fai +b7db377764e51aa005f13a98f4ba17cc Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.mrna_primary.fna.gz.gzi +3ae39a05e49f8d25e27a21aa6f4848a1 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.mrna.fna.gz +767b1105e13e592eaefd9f00d176295f Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.mrna.fna.gz.fai +cd686c6bb8d6fe423bc151c535bc7c9c Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.mrna.fna.gz.gzi +f6accbd2ca5a95c8f979e81be7848537 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.protein_primary.faa.gz +7fa21679915e2f4fa35395582e928830 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.protein_primary.faa.gz.fai +3e65918e211a4f609c68a27136aa75d7 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.protein_primary.faa.gz.gzi +7e122b8151d55485982e453e2118cc8b Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.protein.faa.gz +f3a535164d45c7563c9e96c46dcfd264 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.protein.faa.gz.fai +354f7209b0e2dc28f64565f3a5880cc5 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.protein.faa.gz.gzi +3ede956dc130df155e684ed7db6e7f7f Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.repeatmasked_assembly_v2.0.gff3.gz +2f9243e0bf6f9f86cae993ae5e3a13d7 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/glyma.Wm82.gnm2.ann1.RVB6.synonym.txt.gz +c49a8452fd513b5ebc77d7bf5730d831 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/MANIFEST.Wm82.gnm2.ann1.RVB6.correspondence.yml +b352c08c83c2c102f977df9a1de38044 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/MANIFEST.Wm82.gnm2.ann1.RVB6.descriptions.yml +83a691e8eaea0aa4abe11bcf3047f178 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/original_data_usage_policy.txt +5d07d9bab4d68c51e3f19f90420d9d95 Glycine/max/annotations/Wm82.gnm2.ann1.RVB6/README.Wm82.gnm2.ann1.RVB6.yml diff --git a/Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/CHECKSUM.Wm82.gnm4.ann1.T8TQ.md5 b/Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/CHECKSUM.Wm82.gnm4.ann1.T8TQ.md5 index d27beea8..95772115 100644 --- a/Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/CHECKSUM.Wm82.gnm4.ann1.T8TQ.md5 +++ b/Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/CHECKSUM.Wm82.gnm4.ann1.T8TQ.md5 @@ -1,41 +1,36 @@ -17550dd1b1e96188e665fdab3e27e989 ./glyma.Wm82.gnm4.ann1.T8TQ.cds_primary.fna.gz -1ea9a0fb1f095b41c10943de93a2cd02 ./MANIFEST.Wm82.gnm4.ann1.T8TQ.descriptions.yml -b4e4177440fdda92fd5d034511de10ae ./glyma.Wm82.gnm4.ann1.T8TQ.info_annot.txt.gz -0ad92f60fbecbfae5bdf8d49c595dc15 ./glyma.Wm82.gnm4.ann1.T8TQ.legfed_v1_0.M65K.gfa.tsv.gz -52f93081d943a2be83868723aade66ff ./glyma.Wm82.gnm4.ann1.T8TQ.gene_models_main.bed.gz.tbi -c2335b966b3b26df8e6c310cef218552 ./BUSCO/glyma.Wm82.gnm4.ann1.T8TQ.busco.fabales_odb10.short_summary.txt -7bb937fdd776eb595c74ae84b341d03c ./BUSCO/glyma.Wm82.gnm4.ann1.T8TQ.busco.fabales_odb10.short_summary.json -b83370f15ba5a288140ff02198ea6edb ./BUSCO/glyma.Wm82.gnm4.ann1.T8TQ.busco.fabales_odb10.full_table.tsv.gz -91614b64a3c0b64122c291495d90f2b4 ./glyma.Wm82.gnm4.ann1.T8TQ.mrna.fna.gz.gzi -89b7b5c8843f50fb557ba0df525fc773 ./glyma.Wm82.gnm4.ann1.T8TQ.protein_primary.faa.gz.fai -abb261056a229d02d34a8665be96c4df ./glyma.Wm82.gnm4.ann1.T8TQ.cds_primary.fna.gz.fai -aa906cb4903f5336d90ad98d3c48d6d5 ./glyma.Wm82.gnm4.ann1.T8TQ.info_synonyms.txt.gz -717e1117a972c828441b8bf800963fa4 ./glyma.Wm82.gnm4.ann1.T8TQ.cds.fna.gz.fai -46e89b1110d76375f7a2025089e9a015 ./glyma.Wm82.gnm4.ann1.T8TQ.protein.faa.gz.fai -30a0102624716990546a19919e2f1de6 ./glyma.Wm82.gnm4.ann1.T8TQ.gene_models_main.gff3.gz -35617abd8f166d3876127f36d0f259e6 ./glyma.Wm82.gnm4.ann1.T8TQ.mrna.fna.gz -cced7e371ff1724df4853b621c38c33b ./glyma.Wm82.gnm4.ann1.T8TQ.gene_models_main.bed.gz -1100cfb7218481c52cf96a3df91d1b63 ./glyma.Wm82.gnm4.ann1.T8TQ.gene_models_main.gff3.gz.tbi -5204a8d5a570c0a025bab55a88e5393a ./glyma.Wm82.gnm4.ann1.T8TQ.mrna_primary.fna.gz.gzi -964461b42943f706a5be0244dde69d80 ./glyma.Wm82.gnm4.ann1.T8TQ.cds_low_confidence.fna.gz -37f2f3c2952ad6349e5efdf31b2b8c28 ./README.Wm82.gnm4.ann1.T8TQ.yml -45a9e49b81d3bacbba9585ffe8323161 ./glyma.Wm82.gnm4.ann1.T8TQ.mrna_primary.fna.gz.fai -a0ffbe51c2e7de7a66e1e7f7b7e92fef ./glyma.Wm82.gnm4.ann1.T8TQ.repeatmasking.gff3.gz -7283fcfe25f1f16cfbdcf8fa33a36f4d ./glyma.Wm82.gnm4.ann1.T8TQ.cds.fna.gz.gzi -6ffb4278d01c32119aa2c1aa126f7580 ./glyma.Wm82.gnm4.ann1.T8TQ.protein.faa.gz.gzi -917e43fb63b812c215b1b6afa27c5655 ./glyma.Wm82.gnm4.ann1.T8TQ.protein_primary.faa.gz -3b2dab72f31b46ff628dc73cdb5bf99e ./glyma.Wm82.gnm4.ann1.T8TQ.protein.faa.gz -90321a2e0eb70113439f512d3f99118e ./glyma.Wm82.gnm4.ann1.T8TQ.cds_primary.fna.gz.gzi -0b4f9937bf78d1c9f9d213208f71ba50 ./glyma.Wm82.gnm4.ann1.T8TQ.info_gene_annot.txt.gz -3b879da62154b93e4f9c364477b7b421 ./CHANGES.Wm82.gnm4.ann1.T8TQ.txt -de7a5b761707e34467c7aa0ff6530496 ./glyma.Wm82.gnm4.ann1.T8TQ.protein_primary.faa.gz.gzi -c005195619b4993b1b38868dd055171d ./glyma.Wm82.gnm4.ann1.T8TQ.cds.fna.gz -f62dad3abf3aa86cab2f9012a40d7951 ./MANIFEST.Wm82.gnm4.ann1.T8TQ.correspondence.yml -4ddf7a1a9601762c7d67403d08e4ff46 ./glyma.Wm82.gnm4.ann1.T8TQ.mrna.fna.gz.fai -6fbbf1dfbf1012d8a40d0e7c67a68f29 ./glyma.Wm82.gnm4.ann1.T8TQ.protein_low_confidence.faa.gz -d485b0b063c0363c56712ce0d4f62bcd ./glyma.Wm82.gnm4.ann1.T8TQ.mrna_primary.fna.gz -85759e438245fff4e669b82b2a75a733 ./glyma.Wm82.gnm4.ann1.T8TQ.info_locus_mrna_name_map.txt.gz -4e4f0371c68e7bb8df65396b603d6951 ./glyma.Wm82.gnm4.ann1.T8TQ.gene_models_low_confidence_exons.gff3.gz -f377514199e595dd89259b4772b9d58b ./glyma.Wm82.gnm4.ann1.T8TQ.gene_models_exons.gff3.gz -24364b028780ecaa03905ad42881705e ./busco/glyma.Wm82.gnm4.ann1.T8TQ.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.glyma.Wm82.gnm4.ann1.T8TQ.protein_primaryTranscript.faa.gz_busco.txt -0222bcc38522cfbfe9a18ac5c7c4df5a ./busco/glyma.Wm82.gnm4.ann1.T8TQ.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.glyma.Wm82.gnm4.ann1.T8TQ.protein.faa.gz_busco.txt +3b879da62154b93e4f9c364477b7b421 Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/CHANGES.Wm82.gnm4.ann1.T8TQ.txt +964461b42943f706a5be0244dde69d80 Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.cds_low_confidence.fna.gz +17550dd1b1e96188e665fdab3e27e989 Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.cds_primary.fna.gz +abb261056a229d02d34a8665be96c4df Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.cds_primary.fna.gz.fai +90321a2e0eb70113439f512d3f99118e Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.cds_primary.fna.gz.gzi +c005195619b4993b1b38868dd055171d Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.cds.fna.gz +717e1117a972c828441b8bf800963fa4 Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.cds.fna.gz.fai +7283fcfe25f1f16cfbdcf8fa33a36f4d Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.cds.fna.gz.gzi +f377514199e595dd89259b4772b9d58b Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.gene_models_exons.gff3.gz +4e4f0371c68e7bb8df65396b603d6951 Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.gene_models_low_confidence_exons.gff3.gz +951c4991ef458457a7b9d2d30f765ded Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.gene_models_main.bed.gz 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Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.legfed_v1_0.M65K.gfa.tsv.gz +d485b0b063c0363c56712ce0d4f62bcd Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.mrna_primary.fna.gz +45a9e49b81d3bacbba9585ffe8323161 Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.mrna_primary.fna.gz.fai +5204a8d5a570c0a025bab55a88e5393a Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.mrna_primary.fna.gz.gzi +35617abd8f166d3876127f36d0f259e6 Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.mrna.fna.gz +4ddf7a1a9601762c7d67403d08e4ff46 Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.mrna.fna.gz.fai +91614b64a3c0b64122c291495d90f2b4 Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.mrna.fna.gz.gzi +6fbbf1dfbf1012d8a40d0e7c67a68f29 Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/glyma.Wm82.gnm4.ann1.T8TQ.protein_low_confidence.faa.gz 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Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/MANIFEST.Wm82.gnm4.ann1.T8TQ.correspondence.yml +1ea9a0fb1f095b41c10943de93a2cd02 Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/MANIFEST.Wm82.gnm4.ann1.T8TQ.descriptions.yml +5c8b0a4010853fc794e40e562b313d57 Glycine/max/annotations/Wm82.gnm4.ann1.T8TQ/README.Wm82.gnm4.ann1.T8TQ.yml diff --git a/Glycine/max/annotations/Wm82_IGA1008.gnm1.ann1.FGN6/CHECKSUM.Wm82_IGA1008.gnm1.ann1.FGN6.md5 b/Glycine/max/annotations/Wm82_IGA1008.gnm1.ann1.FGN6/CHECKSUM.Wm82_IGA1008.gnm1.ann1.FGN6.md5 index 81b5683d..16590328 100644 --- a/Glycine/max/annotations/Wm82_IGA1008.gnm1.ann1.FGN6/CHECKSUM.Wm82_IGA1008.gnm1.ann1.FGN6.md5 +++ b/Glycine/max/annotations/Wm82_IGA1008.gnm1.ann1.FGN6/CHECKSUM.Wm82_IGA1008.gnm1.ann1.FGN6.md5 @@ -1,23 +1,20 @@ -6e99d5505dc2bbfaf44370cc8a128539 ./glyma.Wm82_IGA1008.gnm1.ann1.FGN6.mrna.fna.gz.gzi -1ccb9151b9472a386f491e661ba568ce ./BUSCO/glyma.Wm82_IGA1008.gnm1.ann1.FGN6.busco.fabales_odb10.short_summary.json 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./glyma.Wm82_IGA1008.gnm1.ann1.FGN6.gene_models_main.gff3.gz.tbi -3df29c43b88976c6d3f8989b30a90bdf ./glyma.Wm82_IGA1008.gnm1.ann1.FGN6.protein.faa.gz -0f9b49dda2db5b88fe2e11814b56de91 ./glyma.Wm82_IGA1008.gnm1.ann1.FGN6.cds.fna.gz.gzi -f8ebff75487fff178bbdd2ef484864f1 ./glyma.Wm82_IGA1008.gnm1.ann1.FGN6.gene_models_main.gff3.gz -c7834099633e909cc09eeccd21064195 ./glyma.Wm82_IGA1008.gnm1.ann1.FGN6.iprscan.gff3.gz -f6fd6454faa3bb48598ac3fa2c922b9c ./glyma.Wm82_IGA1008.gnm1.ann1.FGN6.protein.faa.gz.gzi -12571b0ae9cf672a544f300ab4530b47 ./MANIFEST.Wm82_IGA1008.gnm1.ann1.FGN6.descriptions.yml -2059ea5548141cc9dc2c59eee3d62d70 ./glyma.Wm82_IGA1008.gnm1.ann1.FGN6.cds.fna.gz -a23772a1d73760edb10e57099876f8f1 ./glyma.Wm82_IGA1008.gnm1.ann1.FGN6.legfed_v1_0.M65K.gfa.tsv.gz -573727fede352561d114b695de21da10 ./glyma.Wm82_IGA1008.gnm1.ann1.FGN6.mrna.fna.gz.fai -eabd163ebc3b7955c04525409942bf49 ./glyma.Wm82_IGA1008.gnm1.ann1.FGN6.gene_models_main.bed.gz.tbi +d59ce284d69613f2a328147984cf56ea 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./BUSCO/glyma.Wm82_ISU01.gnm2.ann1.FGFB.busco.fabales_odb10.full_table.tsv.gz -7b7fedc8c20415e4753ac67be8b8bac0 ./glyma.Wm82_ISU01.gnm2.ann1.FGFB.gene_models_exons.gff3.gz -6ef91bb013d135f6981f04da1ddb076b ./glyma.Wm82_ISU01.gnm2.ann1.FGFB.mrna.fna.gz.fai -ff3cc9fc3878e31ee963d28105437c6c ./CHANGES.Wm82_ISU01.gnm2.ann1.FGFB.txt -46cb8ba430137772e98651ceea053e24 ./glyma.Wm82_ISU01.gnm2.ann1.FGFB.protein_primary.faa.gz.gzi -b0d385de2ccdf1c7cd177770c47b8cd3 ./glyma.Wm82_ISU01.gnm2.ann1.FGFB.protein_primary.faa.gz.fai -eefa6f4390ee9779b289348c9474ff44 ./glyma.Wm82_ISU01.gnm2.ann1.FGFB.mrna.fna.gz.gzi -a8d24a8256ba210fa4d90a7bdb6ced6d ./glyma.Wm82_ISU01.gnm2.ann1.FGFB.legfed_v1_0.M65K.gfa.tsv.gz -779c3f6af77d10241e8696f68326db79 ./glyma.Wm82_ISU01.gnm2.ann1.FGFB.mrna_primary.fna.gz -1d0da7f2e6218136b0dbf69e566ff3e9 ./glyma.Wm82_ISU01.gnm2.ann1.FGFB.gene_models_main.bed.gz.tbi -d529d6494af0a63c6c9155b005cabcb5 ./glyma.Wm82_ISU01.gnm2.ann1.FGFB.repeatmasked_assembly.gff3.gz 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Glycine/max/annotations/Wm82_ISU01.gnm2.ann1.FGFB/MANIFEST.Wm82_ISU01.gnm2.ann1.FGFB.descriptions.yml +d974b6e71de6b2d57cff5c8a6daf819f Glycine/max/annotations/Wm82_ISU01.gnm2.ann1.FGFB/README.Wm82_ISU01.gnm2.ann1.FGFB.yml diff --git a/Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/CHECKSUM.XuDouNo_1.gnm1.ann1.G2T7.md5 b/Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/CHECKSUM.XuDouNo_1.gnm1.ann1.G2T7.md5 index 50cd24b6..4464516f 100644 --- a/Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/CHECKSUM.XuDouNo_1.gnm1.ann1.G2T7.md5 +++ b/Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/CHECKSUM.XuDouNo_1.gnm1.ann1.G2T7.md5 @@ -1,31 +1,28 @@ -5bc45afcefd8c98562f2834562a12a2f ./glyma.XuDouNo_1.gnm1.ann1.G2T7.feature.tsv.gz -ab2318d20daa5564cdd5f102e7523151 ./glyma.XuDouNo_1.gnm1.ann1.G2T7.cds.fna.gz.fai -338ab75644369e3c738560d6dd32ce5b ./glyma.XuDouNo_1.gnm1.ann1.G2T7.protein_primary.faa.gz.gzi -f38b92f9d6e5e9e7cf6318b07453b963 ./MANIFEST.XuDouNo_1.gnm1.ann1.G2T7.correspondence.yml -61a67619987975281888460eb7399c64 ./glyma.XuDouNo_1.gnm1.ann1.G2T7.protein.faa.gz.fai -c394d461b06135b69208b0bae2693a57 ./MANIFEST.XuDouNo_1.gnm1.ann1.G2T7.descriptions.yml -4e7ea38c433b9bc8595f74f07741dffa ./glyma.XuDouNo_1.gnm1.ann1.G2T7.iprscan.gff3.gz.tbi -b7c1c031ded6d3f81069ca97eb9344d5 ./glyma.XuDouNo_1.gnm1.ann1.G2T7.gene_models_main.bed.gz.tbi -ef502eb3d8c0c0d312e5ba6c826f8dea ./glyma.XuDouNo_1.gnm1.ann1.G2T7.mrna.fna.gz.gzi -343efc0557afcd5ffc83b3c72ed47a53 ./glyma.XuDouNo_1.gnm1.ann1.G2T7.legfed_v1_0.M65K.gfa.tsv.gz -d16f568bd58f76fa1a75ab2e5d5ab2c6 ./glyma.XuDouNo_1.gnm1.ann1.G2T7.cds_primary.fna.gz.fai -61f7d76021c421b8dbe6b96654df8f1f ./README.XuDouNo_1.gnm1.ann1.G2T7.yml -7daeaab2b3d8dcd025a845c68847d09c ./glyma.XuDouNo_1.gnm1.ann1.G2T7.cds.fna.gz -cd6087d49330094a1b9281f487c60cf7 ./glyma.XuDouNo_1.gnm1.ann1.G2T7.cds_primary.fna.gz -1da9ab109288e925e0acc7000d193f81 ./BUSCO/glyma.XuDouNo_1.gnm1.ann1.G2T7.busco.fabales_odb10.short_summary.json -ffe8ece73d80bec4a0a01a7d5ecf9a7f ./BUSCO/glyma.XuDouNo_1.gnm1.ann1.G2T7.busco.fabales_odb10.full_table.tsv.gz -bba1f63f8f6e4a3da805ce03c53e5f8e ./BUSCO/glyma.XuDouNo_1.gnm1.ann1.G2T7.busco.fabales_odb10.short_summary.txt -559d2921208c4330ee71c8aac40b6361 ./glyma.XuDouNo_1.gnm1.ann1.G2T7.gene_models_main.gff3.gz.tbi -317aa64716251c264860077481cc53e6 ./glyma.XuDouNo_1.gnm1.ann1.G2T7.iprscan.gff3.gz -d41b2de0c1f08cd3b6eb8faebf3885e8 ./glyma.XuDouNo_1.gnm1.ann1.G2T7.cds_primary.fna.gz.gzi -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.XuDouNo_1.gnm1.ann1.G2T7.txt -b7d30c5f8d904a45bb191720ef9e82d8 ./glyma.XuDouNo_1.gnm1.ann1.G2T7.protein_primary.faa.gz -302da62fb6c208b0985ac5db464e7386 ./glyma.XuDouNo_1.gnm1.ann1.G2T7.featid_map.tsv.gz -7fcb0b6e52507f9cda8973c7fc8ad965 ./glyma.XuDouNo_1.gnm1.ann1.G2T7.mrna.fna.gz.fai -3f5bda16be57955363a4b6fde79528ea ./glyma.XuDouNo_1.gnm1.ann1.G2T7.protein.faa.gz.gzi -e197a017cfe75e364c07989d85a9e34e ./glyma.XuDouNo_1.gnm1.ann1.G2T7.gene_models_main.bed.gz -3a10dfcf34105873355f53fc13a369fc ./glyma.XuDouNo_1.gnm1.ann1.G2T7.mrna.fna.gz -d59e0bd138c7c6636ad98734c6dd354e ./glyma.XuDouNo_1.gnm1.ann1.G2T7.protein_primary.faa.gz.fai -63d065dc8e66053e63b0bd9785a87e3a ./glyma.XuDouNo_1.gnm1.ann1.G2T7.protein.faa.gz -be819423c66298aec4e1dac8e3243ed8 ./glyma.XuDouNo_1.gnm1.ann1.G2T7.gene_models_main.gff3.gz -3ad276bcbea03b1ccce9b00fe76633cd ./glyma.XuDouNo_1.gnm1.ann1.G2T7.cds.fna.gz.gzi +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/CHANGES.XuDouNo_1.gnm1.ann1.G2T7.txt +cd6087d49330094a1b9281f487c60cf7 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.cds_primary.fna.gz +d16f568bd58f76fa1a75ab2e5d5ab2c6 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.cds_primary.fna.gz.fai +d41b2de0c1f08cd3b6eb8faebf3885e8 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.cds_primary.fna.gz.gzi +7daeaab2b3d8dcd025a845c68847d09c Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.cds.fna.gz +ab2318d20daa5564cdd5f102e7523151 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.cds.fna.gz.fai +3ad276bcbea03b1ccce9b00fe76633cd Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.cds.fna.gz.gzi +302da62fb6c208b0985ac5db464e7386 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.featid_map.tsv.gz +5bc45afcefd8c98562f2834562a12a2f Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.feature.tsv.gz +28799e7d8e81eea32856885fa4f7efc2 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.gene_models_main.bed.gz +fd72154409111ee1d6482f493f35d1a9 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.gene_models_main.bed.gz.tbi +be819423c66298aec4e1dac8e3243ed8 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.gene_models_main.gff3.gz +559d2921208c4330ee71c8aac40b6361 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.gene_models_main.gff3.gz.tbi +317aa64716251c264860077481cc53e6 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.iprscan.gff3.gz +4e7ea38c433b9bc8595f74f07741dffa Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.iprscan.gff3.gz.tbi +343efc0557afcd5ffc83b3c72ed47a53 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.legfed_v1_0.M65K.gfa.tsv.gz +3a10dfcf34105873355f53fc13a369fc Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.mrna.fna.gz +7fcb0b6e52507f9cda8973c7fc8ad965 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.mrna.fna.gz.fai +ef502eb3d8c0c0d312e5ba6c826f8dea Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.mrna.fna.gz.gzi +b7d30c5f8d904a45bb191720ef9e82d8 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.protein_primary.faa.gz +d59e0bd138c7c6636ad98734c6dd354e Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.protein_primary.faa.gz.fai +338ab75644369e3c738560d6dd32ce5b Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.protein_primary.faa.gz.gzi +63d065dc8e66053e63b0bd9785a87e3a Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.protein.faa.gz +61a67619987975281888460eb7399c64 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.protein.faa.gz.fai +3f5bda16be57955363a4b6fde79528ea Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/glyma.XuDouNo_1.gnm1.ann1.G2T7.protein.faa.gz.gzi +f38b92f9d6e5e9e7cf6318b07453b963 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/MANIFEST.XuDouNo_1.gnm1.ann1.G2T7.correspondence.yml +c394d461b06135b69208b0bae2693a57 Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/MANIFEST.XuDouNo_1.gnm1.ann1.G2T7.descriptions.yml +61f7d76021c421b8dbe6b96654df8f1f Glycine/max/annotations/XuDouNo_1.gnm1.ann1.G2T7/README.XuDouNo_1.gnm1.ann1.G2T7.yml diff --git a/Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/CHECKSUM.YuDouNo_22.gnm1.ann1.HCQ1.md5 b/Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/CHECKSUM.YuDouNo_22.gnm1.ann1.HCQ1.md5 index e86de4bf..b297406a 100644 --- a/Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/CHECKSUM.YuDouNo_22.gnm1.ann1.HCQ1.md5 +++ b/Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/CHECKSUM.YuDouNo_22.gnm1.ann1.HCQ1.md5 @@ -1,31 +1,28 @@ -4e077d5eb5503a3d0ace058a46174efb ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.cds_primary.fna.gz -41d3253a62bb8a4e4d1e0d39570ecf81 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.protein_primary.faa.gz -38f54f63f2f4af821f7fd5cece2f99dc ./BUSCO/glyma.YuDouNo_22.gnm1.ann1.HCQ1.busco.fabales_odb10.full_table.tsv.gz -c2bd9b6ee6dd34ba51432509de42a492 ./BUSCO/glyma.YuDouNo_22.gnm1.ann1.HCQ1.busco.fabales_odb10.short_summary.txt -7e97bb70f86593741582fa1e988608b6 ./BUSCO/glyma.YuDouNo_22.gnm1.ann1.HCQ1.busco.fabales_odb10.short_summary.json -dffb3f2e9597d33d83f5b8496f7a0cc5 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.cds_primary.fna.gz.gzi -6320fe7643eebe35f8e50cc3d3fed508 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.gene_models_main.bed.gz.tbi -8f0ac3e5be64e07a3cd9129d7ad6d392 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.mrna.fna.gz.gzi -f581429780ea0d6fa683c699ca05356c ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.legfed_v1_0.M65K.gfa.tsv.gz -80dbd91ac8b64e8287261758d4afed4e ./MANIFEST.YuDouNo_22.gnm1.ann1.HCQ1.correspondence.yml -2880e2411b066360772f7294e5cdf785 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.gene_models_main.gff3.gz -da15e470ccf17aeeb8e4479ac7f35c91 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.mrna.fna.gz -599efe84b475fa1d56de7ef9b95b9ff0 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.protein_primary.faa.gz.fai -ee9de0e972ec3ac06f989988b6c5c0f6 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.protein.faa.gz.fai -644a7eff4203f78ca47216d38ca51b17 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.iprscan.gff3.gz.tbi -21ae693b33ca5b27b004e30563b747ef ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.featid_map.tsv.gz -d349d34362a5395307df8a44a1e8d7ea ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.feature.tsv.gz -c2276192eb9ed2c6913b124b25f191b2 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.cds.fna.gz.fai -a2d9131f1049c68cbd63ae160991a335 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.cds.fna.gz.gzi -1892eaf9f3b1d954a64b7a3a92289c70 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.protein.faa.gz -e28a1b1b2d7620d51b6808a7f475071d ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.iprscan.gff3.gz -16dc226d79ff8ca754a0dc91fbefc6d4 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.protein_primary.faa.gz.gzi -ec5e8f1e8fc593951787186245a9262b ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.protein.faa.gz.gzi -3cf865da701113b4c77f2d0595cd03bb ./MANIFEST.YuDouNo_22.gnm1.ann1.HCQ1.descriptions.yml -cf20b321f278aec7b58ae11098a78fb0 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.gene_models_main.gff3.gz.tbi -decddeff230048d449a2674699a1b374 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.mrna.fna.gz.fai -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.YuDouNo_22.gnm1.ann1.HCQ1.txt -953756e887ecc4e501d87b99ea290cc4 ./README.YuDouNo_22.gnm1.ann1.HCQ1.yml -cad2150b5a771e709091eeb94491f6fd ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.cds.fna.gz -ec44d4963ab94794e90b78fc5cafdf18 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.cds_primary.fna.gz.fai -c91781cc5ace8f8b488f56a8d3439a51 ./glyma.YuDouNo_22.gnm1.ann1.HCQ1.gene_models_main.bed.gz +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/CHANGES.YuDouNo_22.gnm1.ann1.HCQ1.txt +4e077d5eb5503a3d0ace058a46174efb Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.cds_primary.fna.gz +ec44d4963ab94794e90b78fc5cafdf18 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.cds_primary.fna.gz.fai +dffb3f2e9597d33d83f5b8496f7a0cc5 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.cds_primary.fna.gz.gzi +cad2150b5a771e709091eeb94491f6fd Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.cds.fna.gz +c2276192eb9ed2c6913b124b25f191b2 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.cds.fna.gz.fai +a2d9131f1049c68cbd63ae160991a335 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.cds.fna.gz.gzi +21ae693b33ca5b27b004e30563b747ef Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.featid_map.tsv.gz +d349d34362a5395307df8a44a1e8d7ea Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.feature.tsv.gz +e95243250906f110a44f63eeed00780c Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.gene_models_main.bed.gz +68b4e28a78640a33a909affe5999809c Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.gene_models_main.bed.gz.tbi +2880e2411b066360772f7294e5cdf785 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.gene_models_main.gff3.gz +cf20b321f278aec7b58ae11098a78fb0 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.gene_models_main.gff3.gz.tbi +e28a1b1b2d7620d51b6808a7f475071d Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.iprscan.gff3.gz +644a7eff4203f78ca47216d38ca51b17 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.iprscan.gff3.gz.tbi +f581429780ea0d6fa683c699ca05356c Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.legfed_v1_0.M65K.gfa.tsv.gz +da15e470ccf17aeeb8e4479ac7f35c91 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.mrna.fna.gz +decddeff230048d449a2674699a1b374 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.mrna.fna.gz.fai +8f0ac3e5be64e07a3cd9129d7ad6d392 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.mrna.fna.gz.gzi +41d3253a62bb8a4e4d1e0d39570ecf81 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.protein_primary.faa.gz +599efe84b475fa1d56de7ef9b95b9ff0 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.protein_primary.faa.gz.fai +16dc226d79ff8ca754a0dc91fbefc6d4 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.protein_primary.faa.gz.gzi +1892eaf9f3b1d954a64b7a3a92289c70 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.protein.faa.gz +ee9de0e972ec3ac06f989988b6c5c0f6 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.protein.faa.gz.fai +ec5e8f1e8fc593951787186245a9262b Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/glyma.YuDouNo_22.gnm1.ann1.HCQ1.protein.faa.gz.gzi +80dbd91ac8b64e8287261758d4afed4e Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/MANIFEST.YuDouNo_22.gnm1.ann1.HCQ1.correspondence.yml +3cf865da701113b4c77f2d0595cd03bb Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/MANIFEST.YuDouNo_22.gnm1.ann1.HCQ1.descriptions.yml +953756e887ecc4e501d87b99ea290cc4 Glycine/max/annotations/YuDouNo_22.gnm1.ann1.HCQ1/README.YuDouNo_22.gnm1.ann1.HCQ1.yml diff --git a/Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/CHECKSUM.Zh13.gnm1.ann1.8VV3.md5 b/Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/CHECKSUM.Zh13.gnm1.ann1.8VV3.md5 index 92a5f15c..b87dbed6 100644 --- a/Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/CHECKSUM.Zh13.gnm1.ann1.8VV3.md5 +++ b/Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/CHECKSUM.Zh13.gnm1.ann1.8VV3.md5 @@ -1,34 +1,29 @@ -a0611e979ba0ef2780a285f66cfccd0b ./glyma.Zh13.gnm1.ann1.8VV3.protein_primary.faa.gz.gzi -4c3a43e212767bae3eaf07b416fd56db ./glyma.Zh13.gnm1.ann1.8VV3.cds.fna.gz -1cedc46a32b11d14db388f898fc1068e ./glyma.Zh13.gnm1.ann1.8VV3.gene_models_main.gff3.gz.tbi -71ca37c47a1a88b73369a164a0ca3a66 ./MANIFEST.Zh13.gnm1.ann1.8VV3.descriptions.yml -ffe3750b39b87415e52e4d07cf529364 ./glyma.Zh13.gnm1.ann1.8VV3.mrna_primary.fna.gz.fai -7eb0d054d7cfd43b15c0c0e789c381d7 ./README.Zh13.gnm1.ann1.8VV3.yml -b03d57f1f0dd5a66160a7f1ae57b7915 ./glyma.Zh13.gnm1.ann1.8VV3.protein.faa.gz.gzi -18348d62acb4ba29843439a0590ab888 ./glyma.Zh13.gnm1.ann1.8VV3.cds_primary.fna.gz.fai -8a117d506dd7f88b50151928963fa18a ./glyma.Zh13.gnm1.ann1.8VV3.mrna_primary.fna.gz -adb1fe60aaeeec9d9b07f391bd4560e1 ./glyma.Zh13.gnm1.ann1.8VV3.protein.faa.gz -941e0f4158ddc613e94061d2387d1202 ./busco/glyma.Zh13.gnm1.ann1.8VV3.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.glyma.Zh13.gnm1.ann1.8VV3.protein.faa.gz_busco.txt -5165d47eef37dbf2d15acaa8679b2d75 ./busco/glyma.Zh13.gnm1.ann1.8VV3.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.glyma.Zh13.gnm1.ann1.8VV3.protein_primaryTranscript.faa.gz_busco.txt -b55d5a84ef0645534f261724f20b703d ./glyma.Zh13.gnm1.ann1.8VV3.cds.fna.gz.gzi -6ec4874f3d35511cc0ca72f50e38faac ./glyma.Zh13.gnm1.ann1.8VV3.mrna.fna.gz -9aabdb15eca02ce7896ae6bc3670b9d0 ./glyma.Zh13.gnm1.ann1.8VV3.mrna.fna.gz.gzi -a14d28f53fdace8ed7518c4acfb038c3 ./glyma.Zh13.gnm1.ann1.8VV3.cds.fna.gz.fai -79d96d2cb6325bc4e952466ff24cdb4d ./glyma.Zh13.gnm1.ann1.8VV3.mrna.fna.gz.fai -aca5c9b0a61e9770d3d2e6740dfb05e0 ./glyma.Zh13.gnm1.ann1.8VV3.protein_primary.faa.gz -21c5dfc03ed7916b12357a63a489f12b ./MANIFEST.Zh13.gnm1.ann1.8VV3.correspondence.yml -e1cda235f2383ea14a55c13bd3032bb5 ./BUSCO/glyma.Zh13.gnm1.ann1.8VV3.busco.fabales_odb10.short_summary.json -9260323833b220afb58ae903ceb41402 ./BUSCO/glyma.Zh13.gnm1.ann1.8VV3.busco.fabales_odb10.full_table.tsv.gz -2831813c62bbb8c17dbc3d229d4ca7fc ./BUSCO/glyma.Zh13.gnm1.ann1.8VV3.busco.fabales_odb10.short_summary.txt -4d850ea11a091a38f0c216f27eb12ddc ./glyma.Zh13.gnm1.ann1.8VV3.cds_primary.fna.gz.gzi -5ccee5e5c4879d4a41418d7e08c749e1 ./glyma.Zh13.gnm1.ann1.8VV3.protein.faa.gz.fai -ae0b2e72889d15250b2c98ce636bef9b ./glyma.Zh13.gnm1.ann1.8VV3.gene_models_main.gff3.gz -b8b0490b8b16db7b4a115f01a615f1d8 ./glyma.Zh13.gnm1.ann1.8VV3.gene_models_main.bed.gz -932e397d71ef7e2c6f82082324191036 ./glyma.Zh13.gnm1.ann1.8VV3.mrna_primary.fna.gz.gzi -d6c9657b08d5779e3acfc3e8616b2b59 ./CHANGES.Zh13.gnm1.ann1.8VV3.txt -4f0c406ee2e2ca3a1493f87dad8518eb ./glyma.Zh13.gnm1.ann1.8VV3.legfed_v1_0.M65K.gfa.tsv.gz -caae853b83a4548fb6df3682c89349bc ./glyma.Zh13.gnm1.ann1.8VV3.gene_models_main.bed.gz.tbi -5eaca9c57a8e1ee852fb527379b57116 ./glyma.Zh13.gnm1.ann1.8VV3.info_gene_annot.txt.gz -6140ff654732a708e3c51ab01c39f9cd ./glyma.Zh13.gnm1.ann1.8VV3.info_ref_hash.txt.gz -da06e562eab03b66225723469ed6db22 ./glyma.Zh13.gnm1.ann1.8VV3.protein_primary.faa.gz.fai -51074feae5c2f537f8f5ec6d149d47e1 ./glyma.Zh13.gnm1.ann1.8VV3.cds_primary.fna.gz +d6c9657b08d5779e3acfc3e8616b2b59 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/CHANGES.Zh13.gnm1.ann1.8VV3.txt +51074feae5c2f537f8f5ec6d149d47e1 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.cds_primary.fna.gz +18348d62acb4ba29843439a0590ab888 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.cds_primary.fna.gz.fai +4d850ea11a091a38f0c216f27eb12ddc Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.cds_primary.fna.gz.gzi +4c3a43e212767bae3eaf07b416fd56db Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.cds.fna.gz +a14d28f53fdace8ed7518c4acfb038c3 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.cds.fna.gz.fai +b55d5a84ef0645534f261724f20b703d Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.cds.fna.gz.gzi +2465a6521d62e8b7efac523cf2497727 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.gene_models_main.bed.gz +84c29f7fabcfbc008dbc517860fc012c Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.gene_models_main.bed.gz.tbi +ae0b2e72889d15250b2c98ce636bef9b Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.gene_models_main.gff3.gz +1cedc46a32b11d14db388f898fc1068e Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.gene_models_main.gff3.gz.tbi +5eaca9c57a8e1ee852fb527379b57116 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.info_gene_annot.txt.gz +6140ff654732a708e3c51ab01c39f9cd Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.info_ref_hash.txt.gz +4f0c406ee2e2ca3a1493f87dad8518eb Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.legfed_v1_0.M65K.gfa.tsv.gz +8a117d506dd7f88b50151928963fa18a Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.mrna_primary.fna.gz +ffe3750b39b87415e52e4d07cf529364 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.mrna_primary.fna.gz.fai +932e397d71ef7e2c6f82082324191036 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.mrna_primary.fna.gz.gzi +6ec4874f3d35511cc0ca72f50e38faac Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.mrna.fna.gz +79d96d2cb6325bc4e952466ff24cdb4d Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.mrna.fna.gz.fai +9aabdb15eca02ce7896ae6bc3670b9d0 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.mrna.fna.gz.gzi +aca5c9b0a61e9770d3d2e6740dfb05e0 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.protein_primary.faa.gz +da06e562eab03b66225723469ed6db22 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.protein_primary.faa.gz.fai +a0611e979ba0ef2780a285f66cfccd0b Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.protein_primary.faa.gz.gzi +adb1fe60aaeeec9d9b07f391bd4560e1 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.protein.faa.gz +5ccee5e5c4879d4a41418d7e08c749e1 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.protein.faa.gz.fai +b03d57f1f0dd5a66160a7f1ae57b7915 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/glyma.Zh13.gnm1.ann1.8VV3.protein.faa.gz.gzi +21c5dfc03ed7916b12357a63a489f12b Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/MANIFEST.Zh13.gnm1.ann1.8VV3.correspondence.yml +71ca37c47a1a88b73369a164a0ca3a66 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/MANIFEST.Zh13.gnm1.ann1.8VV3.descriptions.yml +7eb0d054d7cfd43b15c0c0e789c381d7 Glycine/max/annotations/Zh13.gnm1.ann1.8VV3/README.Zh13.gnm1.ann1.8VV3.yml diff --git a/Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/CHECKSUM.Zh13.gnm2.ann1.FJ3G.md5 b/Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/CHECKSUM.Zh13.gnm2.ann1.FJ3G.md5 index cd8429f9..3a9a1cc0 100644 --- a/Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/CHECKSUM.Zh13.gnm2.ann1.FJ3G.md5 +++ b/Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/CHECKSUM.Zh13.gnm2.ann1.FJ3G.md5 @@ -1,34 +1,31 @@ -00aef03c53ff04619fecffa13e36fd04 ./glyma.Zh13.gnm2.ann1.FJ3G.iprscan.gff3.gz.tbi -995877b9cb4dad951ecbdc5339b6561b ./glyma.Zh13.gnm2.ann1.FJ3G.cds.fna.gz.gzi -b9ace371f88ec772727efba1fbb50239 ./glyma.Zh13.gnm2.ann1.FJ3G.protein_primary.faa.gz.gzi -64ef4577e9a7b506b1c403eb63c6aeb3 ./glyma.Zh13.gnm2.ann1.FJ3G.cds_primary.fna.gz.gzi -3aa8b7505195502117c163d22d24dd46 ./MANIFEST.Zh13.gnm2.ann1.FJ3G.correspondence.yml -e883a0c76e567ec0e39eaa8171ce4700 ./glyma.Zh13.gnm2.ann1.FJ3G.protein_primary.faa.gz -edd5c0b9dcd3f072e32b447c24e83830 ./glyma.Zh13.gnm2.ann1.FJ3G.protein.faa.gz -a727c619eca6c9ac086ee87e27882c8d ./glyma.Zh13.gnm2.ann1.FJ3G.mrna.fna.gz.fai -99fac526eb3f437e6c35b46cd8abba8a ./glyma.Zh13.gnm2.ann1.FJ3G.gene_models_main.bed.gz -c9c372e8ba1da94047231dda7050b89e ./glyma.Zh13.gnm2.ann1.FJ3G.mrna_primary.fna.gz.gzi -9e897fbeede9560489880f06b432bc8c ./README.Zh13.gnm2.ann1.FJ3G.yml -28f8b9075c0716c72f2629e0b4c96ad2 ./glyma.Zh13.gnm2.ann1.FJ3G.protein.faa.gz.gzi -56558d85a184d27c824e665411b83c8d ./glyma.Zh13.gnm2.ann1.FJ3G.iprscan.gff3.gz -7f5822a9986f619aa140698b230bb1e1 ./glyma.Zh13.gnm2.ann1.FJ3G.gene_models_main.gff3.gz.tbi -b5299e7cf750eab80baadc16fe410c5d ./glyma.Zh13.gnm2.ann1.FJ3G.gene_models_main.gff3.gz -530527c73dfeea2622f4208b3b873037 ./CHANGES.Zh13.gnm2.ann1.FJ3G.txt -dea986ac93e60f8787e87b524e190b2a ./glyma.Zh13.gnm2.ann1.FJ3G.cds.fna.gz -c947e9b20572e56290b206dbb8e93857 ./glyma.Zh13.gnm2.ann1.FJ3G.mrna.fna.gz -83f5e25d2dde528ac87feb78587168ec ./glyma.Zh13.gnm2.ann1.FJ3G.protein.faa.gz.fai -c81f138a71bf168c71413f257c1aae9b ./glyma.Zh13.gnm2.ann1.FJ3G.transposon_repeat.gff3.gz.tbi -b48bfc9b033edca897332b5bc0d4a6e5 ./glyma.Zh13.gnm2.ann1.FJ3G.mrna_primary.fna.gz -27a20d96aee77796dedd3bfff2a14db9 ./glyma.Zh13.gnm2.ann1.FJ3G.mrna_primary.fna.gz.fai -09cde30824f1c4b9f3518b8fd2b9e4ff ./BUSCO/glyma.Zh13.gnm2.ann1.FJ3G.busco.fabales_odb10.short_summary.txt -a8756301ac4bfd6e135e4f232e6f1eb0 ./BUSCO/glyma.Zh13.gnm2.ann1.FJ3G.busco.fabales_odb10.full_table.tsv.gz -2afd635841dadd026f0214f0151dd46e ./BUSCO/glyma.Zh13.gnm2.ann1.FJ3G.busco.fabales_odb10.short_summary.json -a4351888b889c3167677cc3e6f62c301 ./glyma.Zh13.gnm2.ann1.FJ3G.legfed_v1_0.M65K.gfa.tsv.gz -43de16f0f4704086ba4d579118bf79f5 ./glyma.Zh13.gnm2.ann1.FJ3G.mrna.fna.gz.gzi -15a2c6d38d524284d8007b76ea51c2f5 ./glyma.Zh13.gnm2.ann1.FJ3G.gene_models_main.bed.gz.tbi -20ff98f0cbbefa971609761c352bac86 ./glyma.Zh13.gnm2.ann1.FJ3G.transposon_repeat.gff3.gz -59c9aa6abf4e2a5390ffccf57ba238ea ./glyma.Zh13.gnm2.ann1.FJ3G.cds_primary.fna.gz.fai -1f738f24ee5fb1a90cc3471e5269a00d ./MANIFEST.Zh13.gnm2.ann1.FJ3G.descriptions.yml -6d979741084f449a5145d8eb2053d17c ./glyma.Zh13.gnm2.ann1.FJ3G.protein_primary.faa.gz.fai -dea8939acfe67ac1fd6fa1b02fff42c2 ./glyma.Zh13.gnm2.ann1.FJ3G.cds.fna.gz.fai -e2580974e0a0eed3d480099c42930130 ./glyma.Zh13.gnm2.ann1.FJ3G.cds_primary.fna.gz +530527c73dfeea2622f4208b3b873037 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/CHANGES.Zh13.gnm2.ann1.FJ3G.txt +e2580974e0a0eed3d480099c42930130 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.cds_primary.fna.gz +59c9aa6abf4e2a5390ffccf57ba238ea Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.cds_primary.fna.gz.fai +64ef4577e9a7b506b1c403eb63c6aeb3 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.cds_primary.fna.gz.gzi +dea986ac93e60f8787e87b524e190b2a Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.cds.fna.gz +dea8939acfe67ac1fd6fa1b02fff42c2 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.cds.fna.gz.fai +995877b9cb4dad951ecbdc5339b6561b Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.cds.fna.gz.gzi +86eb19d3a5f1ab5ac24b5857270245c0 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.gene_models_main.bed.gz +429441f7f5ee4ffbb0e63e68ba6dcac3 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.gene_models_main.bed.gz.tbi +b5299e7cf750eab80baadc16fe410c5d Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.gene_models_main.gff3.gz +7f5822a9986f619aa140698b230bb1e1 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.gene_models_main.gff3.gz.tbi +56558d85a184d27c824e665411b83c8d Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.iprscan.gff3.gz +00aef03c53ff04619fecffa13e36fd04 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.iprscan.gff3.gz.tbi +a4351888b889c3167677cc3e6f62c301 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.legfed_v1_0.M65K.gfa.tsv.gz +b48bfc9b033edca897332b5bc0d4a6e5 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.mrna_primary.fna.gz +27a20d96aee77796dedd3bfff2a14db9 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.mrna_primary.fna.gz.fai +c9c372e8ba1da94047231dda7050b89e Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.mrna_primary.fna.gz.gzi +c947e9b20572e56290b206dbb8e93857 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.mrna.fna.gz +a727c619eca6c9ac086ee87e27882c8d Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.mrna.fna.gz.fai +43de16f0f4704086ba4d579118bf79f5 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.mrna.fna.gz.gzi +e883a0c76e567ec0e39eaa8171ce4700 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.protein_primary.faa.gz +6d979741084f449a5145d8eb2053d17c Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.protein_primary.faa.gz.fai +b9ace371f88ec772727efba1fbb50239 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.protein_primary.faa.gz.gzi +edd5c0b9dcd3f072e32b447c24e83830 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.protein.faa.gz +83f5e25d2dde528ac87feb78587168ec Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.protein.faa.gz.fai +28f8b9075c0716c72f2629e0b4c96ad2 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.protein.faa.gz.gzi +20ff98f0cbbefa971609761c352bac86 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.transposon_repeat.gff3.gz +c81f138a71bf168c71413f257c1aae9b Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/glyma.Zh13.gnm2.ann1.FJ3G.transposon_repeat.gff3.gz.tbi +3aa8b7505195502117c163d22d24dd46 Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/MANIFEST.Zh13.gnm2.ann1.FJ3G.correspondence.yml +1f738f24ee5fb1a90cc3471e5269a00d Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/MANIFEST.Zh13.gnm2.ann1.FJ3G.descriptions.yml +9e897fbeede9560489880f06b432bc8c Glycine/max/annotations/Zh13.gnm2.ann1.FJ3G/README.Zh13.gnm2.ann1.FJ3G.yml diff --git a/Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/CHECKSUM.Zh13_IGA1005.gnm1.ann1.87Z5.md5 b/Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/CHECKSUM.Zh13_IGA1005.gnm1.ann1.87Z5.md5 index 26fb8d8d..ef3994d8 100644 --- a/Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/CHECKSUM.Zh13_IGA1005.gnm1.ann1.87Z5.md5 +++ b/Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/CHECKSUM.Zh13_IGA1005.gnm1.ann1.87Z5.md5 @@ -1,23 +1,20 @@ -f92c25bf6caf34b780feb914fbf57964 ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.mrna.fna.gz.gzi -f783e3e2dbaadd3a08b3d0624cbf2963 ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.cds.fna.gz -f3d5cd678ed1021a5f1b06f7da4ed5d6 ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.cds.fna.gz.fai -eb26ce5a30f94d4476488b937605a829 ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.iprscan.gff3.gz.tbi -3de583b1c25f41a9af193bb48b44437d ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.gene_models_main.bed.gz -ac2c2215c5b3d2ac5820217f5670019c ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.protein.faa.gz.fai -920b543216ba89b097c93087279c3fab ./MANIFEST.Zh13_IGA1005.gnm1.ann1.87Z5.descriptions.yml -549c015f30b6c3dc6d6d4db786cc95e2 ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.gene_models_main.bed.gz.tbi -8f66eb61f3f273ef238e90b2a457ef48 ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.legfed_v1_0.M65K.gfa.tsv.gz -5bb31f8792a73edf24363701d2595886 ./MANIFEST.Zh13_IGA1005.gnm1.ann1.87Z5.correspondence.yml -e3fc819c1e3d2710eb3ed6aabef3ca25 ./CHANGES.Zh13_IGA1005.gnm1.ann1.87Z5.txt -aa5b577deb96f32203d0d7b6cb2f01ab ./README.Zh13_IGA1005.gnm1.ann1.87Z5.yml -53ddc21430b1c07869989f3b8e1edda7 ./BUSCO/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.busco.fabales_odb10.full_table.tsv.gz -89f027875f46e47fde4c4e06e8089c67 ./BUSCO/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.busco.fabales_odb10.short_summary.txt -392c134ec28140a8b587c976f330f553 ./BUSCO/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.busco.fabales_odb10.short_summary.json -ef6db63bca8c267cd6ab0438498ab84b ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.mrna.fna.gz -e59f2f5b8c325bc4c56eb96024f0e61a ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.iprscan.gff3.gz -fd007cf2280febe9de1f49f886cd1cfc ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.protein.faa.gz.gzi -361083e514aa16f6694d741068578d01 ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.gene_models_main.gff3.gz.tbi -5bbe6b4adbf672381ffb823cc97d86aa ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.gene_models_main.gff3.gz -88e7fe221bfa9a4c4c4e4d8e260fef44 ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.cds.fna.gz.gzi -ad798199414d2fb439c0cd11a2e9b976 ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.protein.faa.gz -84ce2461a083c9bca68998995cfae2a0 ./glyma.Zh13_IGA1005.gnm1.ann1.87Z5.mrna.fna.gz.fai +e3fc819c1e3d2710eb3ed6aabef3ca25 Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/CHANGES.Zh13_IGA1005.gnm1.ann1.87Z5.txt +f783e3e2dbaadd3a08b3d0624cbf2963 Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.cds.fna.gz +f3d5cd678ed1021a5f1b06f7da4ed5d6 Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.cds.fna.gz.fai +88e7fe221bfa9a4c4c4e4d8e260fef44 Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.cds.fna.gz.gzi +a6a1fcf30b099c22de4e8ae09648eddd Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.gene_models_main.bed.gz +7e6574ad3e4b2f6b00f0ba51c6d23d95 Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.gene_models_main.bed.gz.tbi +5bbe6b4adbf672381ffb823cc97d86aa Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.gene_models_main.gff3.gz +361083e514aa16f6694d741068578d01 Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.gene_models_main.gff3.gz.tbi +e59f2f5b8c325bc4c56eb96024f0e61a Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.iprscan.gff3.gz +eb26ce5a30f94d4476488b937605a829 Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.iprscan.gff3.gz.tbi +8f66eb61f3f273ef238e90b2a457ef48 Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.legfed_v1_0.M65K.gfa.tsv.gz +ef6db63bca8c267cd6ab0438498ab84b Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.mrna.fna.gz +84ce2461a083c9bca68998995cfae2a0 Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.mrna.fna.gz.fai +f92c25bf6caf34b780feb914fbf57964 Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.mrna.fna.gz.gzi +ad798199414d2fb439c0cd11a2e9b976 Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.protein.faa.gz +ac2c2215c5b3d2ac5820217f5670019c Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.protein.faa.gz.fai +fd007cf2280febe9de1f49f886cd1cfc Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/glyma.Zh13_IGA1005.gnm1.ann1.87Z5.protein.faa.gz.gzi +5bb31f8792a73edf24363701d2595886 Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/MANIFEST.Zh13_IGA1005.gnm1.ann1.87Z5.correspondence.yml +920b543216ba89b097c93087279c3fab Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/MANIFEST.Zh13_IGA1005.gnm1.ann1.87Z5.descriptions.yml +aa5b577deb96f32203d0d7b6cb2f01ab Glycine/max/annotations/Zh13_IGA1005.gnm1.ann1.87Z5/README.Zh13_IGA1005.gnm1.ann1.87Z5.yml diff --git a/Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/CHECKSUM.Zh35_IGA1004.gnm1.ann1.RGN6.md5 b/Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/CHECKSUM.Zh35_IGA1004.gnm1.ann1.RGN6.md5 index 87c079aa..1ed3a116 100644 --- a/Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/CHECKSUM.Zh35_IGA1004.gnm1.ann1.RGN6.md5 +++ b/Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/CHECKSUM.Zh35_IGA1004.gnm1.ann1.RGN6.md5 @@ -1,23 +1,20 @@ -8777ca4cd82496adff929522acaf2de6 ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.gene_models_main.gff3.gz.tbi -b3f6ea5eee3aae27ee7895965bbe5a2f ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.protein.faa.gz -3a81f9a9aea74d22a2eff2f2a2c05519 ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.cds.fna.gz.gzi -dcb81ac1be57edaf2d581e387b5be874 ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.gene_models_main.bed.gz.tbi -31a5654c0d30ead88a8481fc30d3ea4a ./README.Zh35_IGA1004.gnm1.ann1.RGN6.yml -bbd9621d68969778f2b62bd9f594b1df ./MANIFEST.Zh35_IGA1004.gnm1.ann1.RGN6.descriptions.yml -a00842d7e4a846c651980f69e6037927 ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.legfed_v1_0.M65K.gfa.tsv.gz -d40efea2322320291736e1e821f3904e ./MANIFEST.Zh35_IGA1004.gnm1.ann1.RGN6.correspondence.yml -cb7b41a7d08ccdb3654a46e1e0d28eeb ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.iprscan.gff3.gz.tbi -144c9a48a99283dcb062fdc9d9f7e383 ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.mrna.fna.gz.gzi -e664aa1cfb7210558d219ef790217524 ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.mrna.fna.gz -51e7e8fed037c796bca956b2e3b02a9d ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.protein.faa.gz.gzi -b69268eb1c87e2248cc74e5127450eb4 ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.gene_models_main.gff3.gz -b1abc24cde858dff005e223f45142ba7 ./CHANGES.Zh35_IGA1004.gnm1.ann1.RGN6.txt -12fceb5f106c16821a4a2aec6505be20 ./BUSCO/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.busco.fabales_odb10.short_summary.txt -987d52c4e2ba0a6ff8c42da6da41859a ./BUSCO/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.busco.fabales_odb10.full_table.tsv.gz -a01cbab79c9c4761d3e6a56e1c5adeaa ./BUSCO/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.busco.fabales_odb10.short_summary.json -22c711c9fbce0304a7abdf9079adb76d ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.cds.fna.gz -7298c3916d3ae3aa2571aa0fc363fb1d ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.protein.faa.gz.fai -530ad80a9f61192038b1d93e8cd5142a ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.mrna.fna.gz.fai -7bd3f5f03e06ca342dad31ed82d2aaea ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.gene_models_main.bed.gz -4878ffbc0d175e9c144416ac4a23c010 ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.cds.fna.gz.fai -acebc14c58a0dc301b426a562089915d ./glyma.Zh35_IGA1004.gnm1.ann1.RGN6.iprscan.gff3.gz +b1abc24cde858dff005e223f45142ba7 Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/CHANGES.Zh35_IGA1004.gnm1.ann1.RGN6.txt +22c711c9fbce0304a7abdf9079adb76d Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.cds.fna.gz +4878ffbc0d175e9c144416ac4a23c010 Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.cds.fna.gz.fai +3a81f9a9aea74d22a2eff2f2a2c05519 Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.cds.fna.gz.gzi +8693410b6da3e309005540256a7f7713 Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.gene_models_main.bed.gz +d3ed1591f5761f4093d54e09924b16e7 Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.gene_models_main.bed.gz.tbi +b69268eb1c87e2248cc74e5127450eb4 Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.gene_models_main.gff3.gz +8777ca4cd82496adff929522acaf2de6 Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.gene_models_main.gff3.gz.tbi +acebc14c58a0dc301b426a562089915d Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.iprscan.gff3.gz +cb7b41a7d08ccdb3654a46e1e0d28eeb Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.iprscan.gff3.gz.tbi +a00842d7e4a846c651980f69e6037927 Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.legfed_v1_0.M65K.gfa.tsv.gz +e664aa1cfb7210558d219ef790217524 Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.mrna.fna.gz +530ad80a9f61192038b1d93e8cd5142a Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.mrna.fna.gz.fai +144c9a48a99283dcb062fdc9d9f7e383 Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.mrna.fna.gz.gzi +b3f6ea5eee3aae27ee7895965bbe5a2f Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.protein.faa.gz +7298c3916d3ae3aa2571aa0fc363fb1d Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.protein.faa.gz.fai +51e7e8fed037c796bca956b2e3b02a9d Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/glyma.Zh35_IGA1004.gnm1.ann1.RGN6.protein.faa.gz.gzi +d40efea2322320291736e1e821f3904e Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/MANIFEST.Zh35_IGA1004.gnm1.ann1.RGN6.correspondence.yml +bbd9621d68969778f2b62bd9f594b1df Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/MANIFEST.Zh35_IGA1004.gnm1.ann1.RGN6.descriptions.yml +31a5654c0d30ead88a8481fc30d3ea4a Glycine/max/annotations/Zh35_IGA1004.gnm1.ann1.RGN6/README.Zh35_IGA1004.gnm1.ann1.RGN6.yml diff --git a/Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/CHECKSUM.ZhangChunManCangJin.gnm1.ann1.7HPB.md5 b/Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/CHECKSUM.ZhangChunManCangJin.gnm1.ann1.7HPB.md5 index fdb6eb7a..64875d42 100644 --- a/Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/CHECKSUM.ZhangChunManCangJin.gnm1.ann1.7HPB.md5 +++ b/Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/CHECKSUM.ZhangChunManCangJin.gnm1.ann1.7HPB.md5 @@ -1,31 +1,28 @@ -77b21eb6c1d0eca6b201b847a91a3870 ./BUSCO/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.busco.fabales_odb10.short_summary.json -c3ad7c40626e58a63c04a850db0bb00d ./BUSCO/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.busco.fabales_odb10.full_table.tsv.gz -9ac74b0dd048afc944e05e77f1f7afdd ./BUSCO/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.busco.fabales_odb10.short_summary.txt -f3f575e61ee013d9133581cf22ac868a ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.cds.fna.gz.gzi -a08350c574ffb30cd52de48eac518350 ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.iprscan.gff3.gz.tbi -108b947cd7bb58835a7d885d774c4c2b ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.mrna.fna.gz.fai -a6475b36a2b3afba45406fdaef4bda03 ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.protein.faa.gz -2953f08f5fbe442a9753c0297f300cfc ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.gene_models_main.gff3.gz.tbi -28384b6d0c3ad304e2710f97eed3674a ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.protein.faa.gz.gzi -4d3d5a3c4f00ae25d237a41e6b7f6229 ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.gene_models_main.gff3.gz -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.ZhangChunManCangJin.gnm1.ann1.7HPB.txt -20547155df2342488628ffaa83909ffc ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.mrna.fna.gz -c25292a1914bc42cfc2f3d0ae29437d5 ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.protein_primary.faa.gz.fai -8452efe0f206a8f46ada9de368b2a1c1 ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.iprscan.gff3.gz -bf82b43d2a6d8c6c489ea09a9a5c57d1 ./MANIFEST.ZhangChunManCangJin.gnm1.ann1.7HPB.descriptions.yml -d0d05c13c6ca85c7f4668c346dd9eb69 ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.protein_primary.faa.gz -469e9106cc65d79e756188189b6f2a49 ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.cds_primary.fna.gz.gzi -b8a788739156c2192a8d6c9a20b0674a ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.cds.fna.gz -1cd0ac06aa523fa35bdcb3d27d4442c4 ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.cds_primary.fna.gz -8ef5f9c2339bb6c1541d5e5f632900c7 ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.cds_primary.fna.gz.fai -8324e5dc057235f38d20ae437cb0e613 ./MANIFEST.ZhangChunManCangJin.gnm1.ann1.7HPB.correspondence.yml -10961d8daee2fc8323d281f477481175 ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.gene_models_main.bed.gz -ae2a5c64b0db43b3849e0e607c2363b1 ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.protein_primary.faa.gz.gzi -6176015f10687eaea5d38ffe6d12ce6d ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.protein.faa.gz.fai -14f25bfcb80941a253027c1770af90ee ./README.ZhangChunManCangJin.gnm1.ann1.7HPB.yml -4d63abd06a9baee3912418e586d0e7eb ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.mrna.fna.gz.gzi -33cf322a27f110c14cc34b2fe0e2e014 ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.featid_map.tsv.gz -895ba318a87c69fc09a8554b360995db ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.gene_models_main.bed.gz.tbi -2276f74b78c250bea49c156b7617554b ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.cds.fna.gz.fai -fbad01090b20605ec52a5770a796c8f9 ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.feature.tsv.gz -b6fa155e985fe80394407b9167387e17 ./glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.legfed_v1_0.M65K.gfa.tsv.gz +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/CHANGES.ZhangChunManCangJin.gnm1.ann1.7HPB.txt +1cd0ac06aa523fa35bdcb3d27d4442c4 Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.cds_primary.fna.gz +8ef5f9c2339bb6c1541d5e5f632900c7 Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.cds_primary.fna.gz.fai +469e9106cc65d79e756188189b6f2a49 Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.cds_primary.fna.gz.gzi +b8a788739156c2192a8d6c9a20b0674a Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.cds.fna.gz +2276f74b78c250bea49c156b7617554b Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.cds.fna.gz.fai +f3f575e61ee013d9133581cf22ac868a Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.cds.fna.gz.gzi +33cf322a27f110c14cc34b2fe0e2e014 Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.featid_map.tsv.gz +fbad01090b20605ec52a5770a796c8f9 Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.feature.tsv.gz +bb5fd0d79776e5d5d34762fb2a3583ef Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.gene_models_main.bed.gz +764d911c6f81e265f0b79cd05908069b Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.gene_models_main.bed.gz.tbi +4d3d5a3c4f00ae25d237a41e6b7f6229 Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.gene_models_main.gff3.gz +2953f08f5fbe442a9753c0297f300cfc Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.gene_models_main.gff3.gz.tbi +8452efe0f206a8f46ada9de368b2a1c1 Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.iprscan.gff3.gz +a08350c574ffb30cd52de48eac518350 Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.iprscan.gff3.gz.tbi +b6fa155e985fe80394407b9167387e17 Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.legfed_v1_0.M65K.gfa.tsv.gz +20547155df2342488628ffaa83909ffc Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.mrna.fna.gz +108b947cd7bb58835a7d885d774c4c2b Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.mrna.fna.gz.fai +4d63abd06a9baee3912418e586d0e7eb Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.mrna.fna.gz.gzi +d0d05c13c6ca85c7f4668c346dd9eb69 Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.protein_primary.faa.gz +c25292a1914bc42cfc2f3d0ae29437d5 Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.protein_primary.faa.gz.fai +ae2a5c64b0db43b3849e0e607c2363b1 Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.protein_primary.faa.gz.gzi +a6475b36a2b3afba45406fdaef4bda03 Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.protein.faa.gz +6176015f10687eaea5d38ffe6d12ce6d Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.protein.faa.gz.fai +28384b6d0c3ad304e2710f97eed3674a Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/glyma.ZhangChunManCangJin.gnm1.ann1.7HPB.protein.faa.gz.gzi +8324e5dc057235f38d20ae437cb0e613 Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/MANIFEST.ZhangChunManCangJin.gnm1.ann1.7HPB.correspondence.yml +bf82b43d2a6d8c6c489ea09a9a5c57d1 Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/MANIFEST.ZhangChunManCangJin.gnm1.ann1.7HPB.descriptions.yml +14f25bfcb80941a253027c1770af90ee Glycine/max/annotations/ZhangChunManCangJin.gnm1.ann1.7HPB/README.ZhangChunManCangJin.gnm1.ann1.7HPB.yml diff --git a/Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/CHECKSUM.Zhutwinning2.gnm1.ann1.ZTTQ.md5 b/Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/CHECKSUM.Zhutwinning2.gnm1.ann1.ZTTQ.md5 index ab57a5af..9ec88a72 100644 --- a/Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/CHECKSUM.Zhutwinning2.gnm1.ann1.ZTTQ.md5 +++ b/Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/CHECKSUM.Zhutwinning2.gnm1.ann1.ZTTQ.md5 @@ -1,31 +1,28 @@ -7c4849675f3bf534ee4eb2375b52c1a2 ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.gene_models_main.bed.gz -074696af21e66d1ae5cb6133e91c733b ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.protein.faa.gz.gzi -621c965e2e62a99bea6036944f9825de ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.protein_primary.faa.gz.fai -510bfc5c1d99875e271343c6a956a72c ./README.Zhutwinning2.gnm1.ann1.ZTTQ.yml -41f80570083db69bf96c565afceeaeaa ./MANIFEST.Zhutwinning2.gnm1.ann1.ZTTQ.descriptions.yml -a0125d249077a1c6b9abd5922a19bb42 ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.mrna.fna.gz -84d3eae0d56337ed0e9cb634cff38026 ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.gene_models_main.gff3.gz.tbi -fbd8426f0346b2959b2546249bfbff20 ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.feature.tsv.gz -ea6847bb3b1fdc81fc442a99ef946f36 ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.cds.fna.gz.fai -7b92b91210b0058322d6701c6a5042b7 ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.featid_map.tsv.gz -985fe6b6744144edb21e362820a7129a ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.protein_primary.faa.gz -1098a1ee7d4937baa0626934c0909d2d ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.cds_primary.fna.gz.gzi -2871e79e562e9d85448a56ee445f47f4 ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.mrna.fna.gz.gzi -040765eea2afea6bea6fd0ef4187fe99 ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.gene_models_main.gff3.gz -5b9e4cb081ffb064158da2fcee5c9632 ./MANIFEST.Zhutwinning2.gnm1.ann1.ZTTQ.correspondence.yml -3dd18e4fd86f7deef2c6bd8c8f62dc92 ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.mrna.fna.gz.fai -63423328f2a90cd7660fa83737225513 ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.cds_primary.fna.gz.fai -c4f75379f1e119054a3f80dc736b45cf ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.protein.faa.gz -52da87525fd99b7a6e03736a2d213b9b ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.gene_models_main.bed.gz.tbi -000a595b0a49cb9d48c1512120665313 ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.cds_primary.fna.gz -e591be4734df1b93420753225cc3dd00 ./BUSCO/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.busco.fabales_odb10.short_summary.txt -9be2686c71f0674c5c0ec85d8b6a9784 ./BUSCO/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.busco.fabales_odb10.full_table.tsv.gz -8f9ca5d7aca741d3348f3cbcf46873ac ./BUSCO/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.busco.fabales_odb10.short_summary.json -fad41e7f8dec2cd060f1b690510de9ff ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.legfed_v1_0.M65K.gfa.tsv.gz -b7e53ebcb8670d428e6317964856d355 ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.cds.fna.gz.gzi -d9b0feec1cedc67e4f75f7e9955406c6 ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.iprscan.gff3.gz -5a43a3434e38b79a123c1d0510e2369f ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.iprscan.gff3.gz.tbi -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.Zhutwinning2.gnm1.ann1.ZTTQ.txt -a9a1c3f4432a2c602b3b576a22a32540 ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.protein_primary.faa.gz.gzi -0770215d6461a1f3abe326af6d1a39fa ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.cds.fna.gz -6827f38efe6e70cd579fd381b180e1bb ./glyma.Zhutwinning2.gnm1.ann1.ZTTQ.protein.faa.gz.fai +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/CHANGES.Zhutwinning2.gnm1.ann1.ZTTQ.txt +000a595b0a49cb9d48c1512120665313 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.cds_primary.fna.gz +63423328f2a90cd7660fa83737225513 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.cds_primary.fna.gz.fai +1098a1ee7d4937baa0626934c0909d2d Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.cds_primary.fna.gz.gzi +0770215d6461a1f3abe326af6d1a39fa Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.cds.fna.gz +ea6847bb3b1fdc81fc442a99ef946f36 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.cds.fna.gz.fai +b7e53ebcb8670d428e6317964856d355 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.cds.fna.gz.gzi +7b92b91210b0058322d6701c6a5042b7 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.featid_map.tsv.gz +fbd8426f0346b2959b2546249bfbff20 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.feature.tsv.gz +e8dac83b78153375ddc45caf2e096627 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.gene_models_main.bed.gz +a989bd6e14870f0547840af32705f302 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.gene_models_main.bed.gz.tbi +040765eea2afea6bea6fd0ef4187fe99 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.gene_models_main.gff3.gz +84d3eae0d56337ed0e9cb634cff38026 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.gene_models_main.gff3.gz.tbi +d9b0feec1cedc67e4f75f7e9955406c6 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.iprscan.gff3.gz +5a43a3434e38b79a123c1d0510e2369f Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.iprscan.gff3.gz.tbi +fad41e7f8dec2cd060f1b690510de9ff Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.legfed_v1_0.M65K.gfa.tsv.gz +a0125d249077a1c6b9abd5922a19bb42 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.mrna.fna.gz +3dd18e4fd86f7deef2c6bd8c8f62dc92 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.mrna.fna.gz.fai +2871e79e562e9d85448a56ee445f47f4 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.mrna.fna.gz.gzi +985fe6b6744144edb21e362820a7129a Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.protein_primary.faa.gz +621c965e2e62a99bea6036944f9825de Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.protein_primary.faa.gz.fai +a9a1c3f4432a2c602b3b576a22a32540 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.protein_primary.faa.gz.gzi +c4f75379f1e119054a3f80dc736b45cf Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.protein.faa.gz +6827f38efe6e70cd579fd381b180e1bb Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.protein.faa.gz.fai +074696af21e66d1ae5cb6133e91c733b Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/glyma.Zhutwinning2.gnm1.ann1.ZTTQ.protein.faa.gz.gzi +5b9e4cb081ffb064158da2fcee5c9632 Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/MANIFEST.Zhutwinning2.gnm1.ann1.ZTTQ.correspondence.yml +41f80570083db69bf96c565afceeaeaa Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/MANIFEST.Zhutwinning2.gnm1.ann1.ZTTQ.descriptions.yml +510bfc5c1d99875e271343c6a956a72c Glycine/max/annotations/Zhutwinning2.gnm1.ann1.ZTTQ/README.Zhutwinning2.gnm1.ann1.ZTTQ.yml diff --git a/Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/CHECKSUM.ZiHuaNo_4.gnm1.ann1.FCFQ.md5 b/Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/CHECKSUM.ZiHuaNo_4.gnm1.ann1.FCFQ.md5 index d9d5c226..5ed4185c 100644 --- a/Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/CHECKSUM.ZiHuaNo_4.gnm1.ann1.FCFQ.md5 +++ b/Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/CHECKSUM.ZiHuaNo_4.gnm1.ann1.FCFQ.md5 @@ -1,31 +1,28 @@ -5dbefa4965197c770e1902c6e8d0ebce ./MANIFEST.ZiHuaNo_4.gnm1.ann1.FCFQ.descriptions.yml -241af1cb006f51619346f1fbe608812f ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.gene_models_main.gff3.gz.tbi -123ec87449eb0ddf3921a29cf2d9f74b ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.gene_models_main.gff3.gz -f1b3d4a2d8067835646d19ccad40a3be ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.mrna.fna.gz.gzi -10e3224321c509725c578b1536184e43 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.protein_primary.faa.gz.gzi -b9280a6f829f34a69638c0d057667732 ./BUSCO/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.busco.fabales_odb10.short_summary.txt -4ba081745f47928fd2af4ce058a160fb ./BUSCO/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.busco.fabales_odb10.short_summary.json -8b726762fad50b977f85d1a536d144a4 ./BUSCO/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.busco.fabales_odb10.full_table.tsv.gz -c432c7354f2454fbd145a323f0fe228c ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.protein.faa.gz.fai -9e72d1d739c0b9232ae803c2ea87ed92 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.feature.tsv.gz -5a83ed41085a279a86606140c8ee11f7 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.cds.fna.gz.fai -289f7ca560a3d6a4c7abf3a5baf4072e ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.protein_primary.faa.gz -87118769cf503d3c559607589906b133 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.cds_primary.fna.gz.gzi -f93547d9bafd1679ee0b41e55a0b7133 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.iprscan.gff3.gz.tbi -6c7483c33cebe486bab02b75de2f3400 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.cds_primary.fna.gz -aaf7cd29ece03ca27579544ac1389426 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.legfed_v1_0.M65K.gfa.tsv.gz -0f5d27aa3ac2f836ff7601a485a8c118 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.gene_models_main.bed.gz.tbi -fc33d53b9640efc99d11ba2e3e45d093 ./README.ZiHuaNo_4.gnm1.ann1.FCFQ.yml -20fe537beb0603ab22adad2423e841a3 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.featid_map.tsv.gz -ffa89f44d9f774786a855b662e9e30de ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.cds.fna.gz -5bb0b630c511dc49f4c32fdc6d60b141 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.gene_models_main.bed.gz -c890f49d502b7cc69dc636f5a637c5d5 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.protein.faa.gz -7bfaecbdbbd2c3e14670f3f3f2b58296 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.cds_primary.fna.gz.fai -b50fee098fb4f5759a8adf11ab7daee9 ./MANIFEST.ZiHuaNo_4.gnm1.ann1.FCFQ.correspondence.yml -44329b41475837121f7995ae6d4d3e8c ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.cds.fna.gz.gzi -852339b5575be8b17dc4272a08be0ddc ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.iprscan.gff3.gz -afada92d2059b29d8fe45708a59c8e83 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.protein.faa.gz.gzi -f3e17709fc3e62791692c00f9b1131c3 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.mrna.fna.gz -aa3587bfb51c104bbc81e6f3d35808e9 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.protein_primary.faa.gz.fai -bfa65f3954c688afb2ea4e22a194713b ./CHANGES.ZiHuaNo_4.gnm1.ann1.FCFQ.txt -020e65d04261b47626df73a0fa8d63a9 ./glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.mrna.fna.gz.fai +bfa65f3954c688afb2ea4e22a194713b Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/CHANGES.ZiHuaNo_4.gnm1.ann1.FCFQ.txt +6c7483c33cebe486bab02b75de2f3400 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.cds_primary.fna.gz +7bfaecbdbbd2c3e14670f3f3f2b58296 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.cds_primary.fna.gz.fai +87118769cf503d3c559607589906b133 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.cds_primary.fna.gz.gzi +ffa89f44d9f774786a855b662e9e30de Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.cds.fna.gz +5a83ed41085a279a86606140c8ee11f7 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.cds.fna.gz.fai +44329b41475837121f7995ae6d4d3e8c Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.cds.fna.gz.gzi +20fe537beb0603ab22adad2423e841a3 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.featid_map.tsv.gz +9e72d1d739c0b9232ae803c2ea87ed92 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.feature.tsv.gz +abc00279a74a20697bf2f83c3a2140e7 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.gene_models_main.bed.gz +1d0b69c27fbf4bafadf6e07543cb84d3 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.gene_models_main.bed.gz.tbi +123ec87449eb0ddf3921a29cf2d9f74b Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.gene_models_main.gff3.gz +241af1cb006f51619346f1fbe608812f Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.gene_models_main.gff3.gz.tbi +852339b5575be8b17dc4272a08be0ddc Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.iprscan.gff3.gz +f93547d9bafd1679ee0b41e55a0b7133 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.iprscan.gff3.gz.tbi +aaf7cd29ece03ca27579544ac1389426 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.legfed_v1_0.M65K.gfa.tsv.gz +f3e17709fc3e62791692c00f9b1131c3 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.mrna.fna.gz +020e65d04261b47626df73a0fa8d63a9 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.mrna.fna.gz.fai +f1b3d4a2d8067835646d19ccad40a3be Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.mrna.fna.gz.gzi +289f7ca560a3d6a4c7abf3a5baf4072e Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.protein_primary.faa.gz +aa3587bfb51c104bbc81e6f3d35808e9 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.protein_primary.faa.gz.fai +10e3224321c509725c578b1536184e43 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.protein_primary.faa.gz.gzi +c890f49d502b7cc69dc636f5a637c5d5 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.protein.faa.gz +c432c7354f2454fbd145a323f0fe228c Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.protein.faa.gz.fai +afada92d2059b29d8fe45708a59c8e83 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/glyma.ZiHuaNo_4.gnm1.ann1.FCFQ.protein.faa.gz.gzi +b50fee098fb4f5759a8adf11ab7daee9 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/MANIFEST.ZiHuaNo_4.gnm1.ann1.FCFQ.correspondence.yml +5dbefa4965197c770e1902c6e8d0ebce Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/MANIFEST.ZiHuaNo_4.gnm1.ann1.FCFQ.descriptions.yml +fc33d53b9640efc99d11ba2e3e45d093 Glycine/max/annotations/ZiHuaNo_4.gnm1.ann1.FCFQ/README.ZiHuaNo_4.gnm1.ann1.FCFQ.yml diff --git a/Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/CHECKSUM.F_IGA1003.gnm1.ann1.G61B.md5 b/Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/CHECKSUM.F_IGA1003.gnm1.ann1.G61B.md5 index c43f349a..c54a2eec 100644 --- a/Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/CHECKSUM.F_IGA1003.gnm1.ann1.G61B.md5 +++ b/Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/CHECKSUM.F_IGA1003.gnm1.ann1.G61B.md5 @@ -1,25 +1,20 @@ -c83affff882486c21b4b284b62a4e613 ./glyso.F_IGA1003.gnm1.ann1.G61B.gene_models_main.gff3.gz.tbi -55ee6bf382d800c3a57e5b2d0d341b94 ./BUSCO/glyso.F_IGA1003.gnm1.ann1.G61B.busco.fabales_odb10.short_summary.txt -61ca18b36ae002bf7e830582afa58ceb ./BUSCO/glyso.F_IGA1003.gnm1.ann1.G61B.busco.fabales_odb10.full_table.tsv.gz -d53243833286460c047d06244a1f5475 ./BUSCO/glyso.F_IGA1003.gnm1.ann1.G61B.busco.fabales_odb10.short_summary.json -563caa0b940dc549a3b15d908283263d ./glyso.F_IGA1003.gnm1.ann1.G61B.protein.faa.gz.gzi -186c0a937c347da1ee416056ddc38e14 ./MANIFEST.glyso.F_IGA1003.gnm1.ann1.G61B.correspondence.yml -9b44af79a0c765af93f7ca90388a7769 ./MANIFEST.glyso.F_IGA1003.gnm1.ann1.G61B.descriptions.yml -31d50ad1ae2268f153b7d2c8b088175c ./glyso.F_IGA1003.gnm1.ann1.G61B.mrna.fna.gz.fai -3726ada4ac366f1bf6466bee21b18644 ./glyso.F_IGA1003.gnm1.ann1.G61B.cds.fna.gz.fai -36a2c0a2275020822a047c7d15f8e575 ./glyso.F_IGA1003.gnm1.ann1.G61B.gene_models_main.gff3.gz -e0ea4999b7f39cbfffb0c3068826eb59 ./glyso.F_IGA1003.gnm1.ann1.G61B.iprscan.gff3.gz -9fe640dcc1fc6d5ab35f8c4dc037e14c ./glyso.F_IGA1003.gnm1.ann1.G61B.cds.fna.gz -760140ed59c32d0614ad5a424da45f7a ./glyso.F_IGA1003.gnm1.ann1.G61B.mrna.fna.gz -db39fa0c1f0a579b535914876355ae74 ./CHANGES.F_IGA1003.gnm1.ann1.G61B.txt -8e3f5ec780f20e10c16199cdeb87c9d1 ./glyso.F_IGA1003.gnm1.ann1.G61B.gene_models_exons.gff3.gz.tbi -3491f8b4b514b230031e299743ee009b ./glyso.F_IGA1003.gnm1.ann1.G61B.cds.fna.gz.gzi -183a35d31e7080acab30e74512847f4e ./glyso.F_IGA1003.gnm1.ann1.G61B.protein.faa.gz -abed4447c24fcfae0755fb1815e41e50 ./README.F_IGA1003.gnm1.ann1.G61B.yml -bb8919891dde51202c8eea9b71b49a15 ./glyso.F_IGA1003.gnm1.ann1.G61B.legfed_v1_0.M65K.gfa.tsv.gz -1c90a5798fdc61d9322dfeef482b2c07 ./glyso.F_IGA1003.gnm1.ann1.G61B.gene_models_main.bed.gz.tbi -c86caad72f859ff9fe2f9029546ab712 ./glyso.F_IGA1003.gnm1.ann1.G61B.mrna.fna.gz.gzi -a5e15ed113a586244db910a5a1f37503 ./glyso.F_IGA1003.gnm1.ann1.G61B.gene_models_main.bed.gz -c013338cf139d5a836058775e49596a1 ./glyso.F_IGA1003.gnm1.ann1.G61B.iprscan.gff3.gz.tbi -b826243542c11badcc621f0de5438e8d ./glyso.F_IGA1003.gnm1.ann1.G61B.protein.faa.gz.fai -fbe30ec94980e295224770bd0b8850ff ./glyso.F_IGA1003.gnm1.ann1.G61B.gene_models_exons.gff3.gz +cb264e2741e85f45a0f2bb1c92855286 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/CHANGES.F_IGA1003.gnm1.ann1.G61B.txt +937eae67399c23ea51e33146c4524597 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.cds.fna.gz +78686a288a59f11cf461867fc4d284e6 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.cds.fna.gz.fai +f0d1ae6d55b4724ebd37ed9f976f4edd Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.cds.fna.gz.gzi +4100a9f46bfd2265e9adfb872f5cefa5 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.gene_models_exons.gff3.gz +b33d797ee843fa61b7214953a0236405 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.gene_models_main.bed.gz +dbdcd74dc8100ef95572bd09832e28e6 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.gene_models_main.bed.gz.tbi +c57f189b7475238b7d153e2d1c5c235e Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.gene_models_main.gff3.gz +ad2bc9446b13d29a0106075c92bd10de Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.gene_models_main.gff3.gz.tbi +c90968b561fc2598ffc9d47034d98d59 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.iprscan.gff3.gz +acc64f41756edbfa6858b0fb544197bd Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.legfed_v1_0.M65K.gfa.tsv.gz +c1a8a2148f7d8383f6ac9c5b5ea3dad9 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.mrna.fna.gz +c55ab5cfa2678fae4c3251ce1e9c4856 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.mrna.fna.gz.fai +268ceff098305cafbac2796a0096e5e5 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.mrna.fna.gz.gzi +9ad311c5078db52d4d5a1cbacfc13937 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.protein.faa.gz +751c89bfaa904611516192b43c7cfbc0 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.protein.faa.gz.fai +6314f109babe2bf1f8c23c77e9cb0f82 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/glyso.F_IGA1003.gnm1.ann1.G61B.protein.faa.gz.gzi +186c0a937c347da1ee416056ddc38e14 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/MANIFEST.glyso.F_IGA1003.gnm1.ann1.G61B.correspondence.yml +9b44af79a0c765af93f7ca90388a7769 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/MANIFEST.glyso.F_IGA1003.gnm1.ann1.G61B.descriptions.yml +abed4447c24fcfae0755fb1815e41e50 Glycine/soja/annotations/F_IGA1003.gnm1.ann1.G61B/README.F_IGA1003.gnm1.ann1.G61B.yml diff --git a/Glycine/soja/annotations/PI483463.gnm1.ann1.3Q3Q/CHECKSUM.PI483463.gnm1.ann1.3Q3Q.md5 b/Glycine/soja/annotations/PI483463.gnm1.ann1.3Q3Q/CHECKSUM.PI483463.gnm1.ann1.3Q3Q.md5 index 3cd44a59..694fc7ab 100644 --- a/Glycine/soja/annotations/PI483463.gnm1.ann1.3Q3Q/CHECKSUM.PI483463.gnm1.ann1.3Q3Q.md5 +++ b/Glycine/soja/annotations/PI483463.gnm1.ann1.3Q3Q/CHECKSUM.PI483463.gnm1.ann1.3Q3Q.md5 @@ -1,35 +1,30 @@ -074c9b7cbe0846736b3f49f4f6837698 ./glyso.PI483463.gnm1.ann1.3Q3Q.protein.faa.gz.fai -ab48103adcee41a038521c724609c736 ./CHANGES.PI483463.gnm1.ann1.3Q3Q.txt -604fe515e2310b35b66a865bd4eb483c ./glyso.PI483463.gnm1.ann1.3Q3Q.protein_primary.faa.gz.fai -b3bf43f2b5dc91348931eb7c1df0ab41 ./busco/glyso.PI483463.gnm1.ann1.3Q3Q.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.glyso.PI483463.gnm1.ann1.3Q3Q.protein_primaryTranscript.faa.gz_busco.txt -697c23d6d0999c7d5a850a8765443879 ./busco/glyso.PI483463.gnm1.ann1.3Q3Q.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.glyso.PI483463.gnm1.ann1.3Q3Q.protein.faa.gz_busco.txt -ed6510d4a99d1e9214ddf0cc00c6d83e ./glyso.PI483463.gnm1.ann1.3Q3Q.cds.fna.gz.fai -8724256f754dd8321ee654fb7a5ce81a 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a/Glycine/soja/annotations/PI_549046.gnm1.ann1.65KD/CHECKSUM.PI_549046.gnm1.ann1.65KD.md5 +++ b/Glycine/soja/annotations/PI_549046.gnm1.ann1.65KD/CHECKSUM.PI_549046.gnm1.ann1.65KD.md5 @@ -1,31 +1,28 @@ -9e9fb1de6b229d0001c5f6b17dcadf70 ./glyso.PI_549046.gnm1.ann1.65KD.cds.fna.gz.gzi -016aecc039d6e926d092a941cf70d284 ./glyso.PI_549046.gnm1.ann1.65KD.protein_primary.faa.gz.gzi -f2c7c483a86143bc3c5951b6f39c16df ./glyso.PI_549046.gnm1.ann1.65KD.protein.faa.gz -8816f448b37e77230a05b7de2d1f26a6 ./glyso.PI_549046.gnm1.ann1.65KD.cds_primary.fna.gz.fai -c749b06c0e4cde99ab603600022c560c ./glyso.PI_549046.gnm1.ann1.65KD.mrna.fna.gz -1b5b714e60d5f3c016a6e8d5fcd92062 ./glyso.PI_549046.gnm1.ann1.65KD.cds.fna.gz -12940b78c2d58b9fff8a9279374322eb ./glyso.PI_549046.gnm1.ann1.65KD.mrna.fna.gz.gzi -2b418d7fb0a6fc3c792460e9425af59c ./glyso.PI_549046.gnm1.ann1.65KD.protein.faa.gz.gzi -8ea7111fa03e3b47954813b2622588f2 ./glyso.PI_549046.gnm1.ann1.65KD.protein.faa.gz.fai -27e7bb6b2aef084c3978656b24c57c58 ./glyso.PI_549046.gnm1.ann1.65KD.gene_models_main.gff3.gz -124db761fcd7875d82cb2dc312381927 ./glyso.PI_549046.gnm1.ann1.65KD.mrna.fna.gz.fai -de2c9c9db368bfd40feff5a7cd5936d2 ./MANIFEST.PI_549046.gnm1.ann1.65KD.descriptions.yml -260c1fd9f37ef3cbce6d71fd995ef307 ./glyso.PI_549046.gnm1.ann1.65KD.gene_models_main.bed.gz.tbi -c5e6c83ae7404647cf75d48881b52a56 ./glyso.PI_549046.gnm1.ann1.65KD.legfed_v1_0.M65K.gfa.tsv.gz -a5298e2a8a30100437925fc0f6951da9 ./glyso.PI_549046.gnm1.ann1.65KD.gene_models_main.gff3.gz.tbi -531168b589ebb9224952617f6c35106b ./MANIFEST.PI_549046.gnm1.ann1.65KD.correspondence.yml -a5c5dbdb2475161bd7823965b4c3086f ./glyso.PI_549046.gnm1.ann1.65KD.gene_models_main.bed.gz -4902cada06dbf48e7f687ca5f93e67b7 ./glyso.PI_549046.gnm1.ann1.65KD.iprscan.gff3.gz -7c8e91c4da2b8f9c8a8f1377e323680a ./glyso.PI_549046.gnm1.ann1.65KD.cds_primary.fna.gz -93e1dc10c324a584a9fe32017e0d2c5a ./glyso.PI_549046.gnm1.ann1.65KD.iprscan.gff3.gz.tbi -82d770e906774c834df0548970adcee9 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b/Glycine/soja/annotations/PI_562565.gnm1.ann1.1JD2/CHECKSUM.PI_562565.gnm1.ann1.1JD2.md5 index 915b441d..3b34d4b4 100644 --- a/Glycine/soja/annotations/PI_562565.gnm1.ann1.1JD2/CHECKSUM.PI_562565.gnm1.ann1.1JD2.md5 +++ b/Glycine/soja/annotations/PI_562565.gnm1.ann1.1JD2/CHECKSUM.PI_562565.gnm1.ann1.1JD2.md5 @@ -1,31 +1,28 @@ -f0f74f35eb29eb2b4ee0c9025ee12641 ./glyso.PI_562565.gnm1.ann1.1JD2.iprscan.gff3.gz -c742c2a633ca213580ca0148a6b18bd8 ./glyso.PI_562565.gnm1.ann1.1JD2.cds.fna.gz.gzi -022364e0a1506baaf133c3f6b109c55a ./glyso.PI_562565.gnm1.ann1.1JD2.protein.faa.gz.fai -88145b0b8c9cbebb7f1259a09982b9b3 ./glyso.PI_562565.gnm1.ann1.1JD2.protein.faa.gz -7865cbf04eea563ac5aca983420b76bf ./glyso.PI_562565.gnm1.ann1.1JD2.featid_map.tsv.gz -c2e955d42275276dc477fa46b03cea1e ./MANIFEST.PI_562565.gnm1.ann1.1JD2.correspondence.yml -d8448590bcd560fffc8092790003bd15 ./glyso.PI_562565.gnm1.ann1.1JD2.protein_primary.faa.gz.gzi -74060bed716ac073724a7b1e5ceafc90 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./glyso.PI_562565.gnm1.ann1.1JD2.feature.tsv.gz -76312c62b2431f6b44db1b57cfaab353 ./glyso.PI_562565.gnm1.ann1.1JD2.cds.fna.gz.fai +bfa65f3954c688afb2ea4e22a194713b Glycine/soja/annotations/PI_562565.gnm1.ann1.1JD2/CHANGES.PI_562565.gnm1.ann1.1JD2.txt +74060bed716ac073724a7b1e5ceafc90 Glycine/soja/annotations/PI_562565.gnm1.ann1.1JD2/glyso.PI_562565.gnm1.ann1.1JD2.cds_primary.fna.gz +af41239baadf9a9cc09012d4755ca583 Glycine/soja/annotations/PI_562565.gnm1.ann1.1JD2/glyso.PI_562565.gnm1.ann1.1JD2.cds_primary.fna.gz.fai +c462362b7a907e310bcb42e39e384cc2 Glycine/soja/annotations/PI_562565.gnm1.ann1.1JD2/glyso.PI_562565.gnm1.ann1.1JD2.cds_primary.fna.gz.gzi +4ada3cabacf515a2775fdc45c7fbabd5 Glycine/soja/annotations/PI_562565.gnm1.ann1.1JD2/glyso.PI_562565.gnm1.ann1.1JD2.cds.fna.gz +76312c62b2431f6b44db1b57cfaab353 Glycine/soja/annotations/PI_562565.gnm1.ann1.1JD2/glyso.PI_562565.gnm1.ann1.1JD2.cds.fna.gz.fai +c742c2a633ca213580ca0148a6b18bd8 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Glycine/soja/annotations/PI_562565.gnm1.ann1.1JD2/README.PI_562565.gnm1.ann1.1JD2.yml diff --git a/Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/CHECKSUM.PI_578357.gnm1.ann1.0ZKP.md5 b/Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/CHECKSUM.PI_578357.gnm1.ann1.0ZKP.md5 index fa95ac17..d53daed1 100644 --- a/Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/CHECKSUM.PI_578357.gnm1.ann1.0ZKP.md5 +++ b/Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/CHECKSUM.PI_578357.gnm1.ann1.0ZKP.md5 @@ -1,31 +1,28 @@ -e06072c171054a7472bc0134f597e8a7 ./glyso.PI_578357.gnm1.ann1.0ZKP.featid_map.tsv.gz -37e31452e2197814f3d4f1faa70926bb ./glyso.PI_578357.gnm1.ann1.0ZKP.protein.faa.gz -61666079f4a4815ccb6dd418e85d148f ./glyso.PI_578357.gnm1.ann1.0ZKP.cds_primary.fna.gz.fai -2d8c87292d18284e00068fb6e57d7715 ./glyso.PI_578357.gnm1.ann1.0ZKP.gene_models_main.gff3.gz.tbi -0731f204a2b8279ca56421e678b9ba23 ./glyso.PI_578357.gnm1.ann1.0ZKP.iprscan.gff3.gz.tbi -45e0cde1ada42627e2cf15aa33bca9c2 ./glyso.PI_578357.gnm1.ann1.0ZKP.cds.fna.gz.gzi -8bbb42d1e30df8d1b1942c8f9b259798 ./glyso.PI_578357.gnm1.ann1.0ZKP.mrna.fna.gz.gzi -5dd26c4f59ac4fe40ce771c605c0978f ./glyso.PI_578357.gnm1.ann1.0ZKP.protein_primary.faa.gz.gzi -664b6b347b4f3341b47c4f3a9f1cdb7c ./MANIFEST.PI_578357.gnm1.ann1.0ZKP.descriptions.yml -f494fa130042877eb8d681fe6a7f70b3 ./glyso.PI_578357.gnm1.ann1.0ZKP.gene_models_main.bed.gz -71baf1fe014039a937170ff695ef3829 ./README.PI_578357.gnm1.ann1.0ZKP.yml -f034a9282dc8127ca25f2a7ada62d3c2 ./glyso.PI_578357.gnm1.ann1.0ZKP.protein.faa.gz.gzi -56c8c6ff34cd0b4092764c82b0267197 ./glyso.PI_578357.gnm1.ann1.0ZKP.mrna.fna.gz -24bbe37b713a28668c108e788827525f ./glyso.PI_578357.gnm1.ann1.0ZKP.protein.faa.gz.fai -8db110084120c5b00eafc81793d882f6 ./glyso.PI_578357.gnm1.ann1.0ZKP.cds.fna.gz -97de06c23d522c84cb96341260ec4c1a ./glyso.PI_578357.gnm1.ann1.0ZKP.mrna.fna.gz.fai -51620eee410e10ac54968d2d5475c121 ./glyso.PI_578357.gnm1.ann1.0ZKP.gene_models_main.bed.gz.tbi 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-dc1a19ee51a06f0929b2fe35ec78003f ./BUSCO/glyso.PI_578357.gnm1.ann1.0ZKP.busco.fabales_odb10.full_table.tsv.gz -12ecf7930b4fe950f05c9f57e1286eee ./BUSCO/glyso.PI_578357.gnm1.ann1.0ZKP.busco.fabales_odb10.short_summary.txt -2545e5b335e402c4f87314212fc1384d ./glyso.PI_578357.gnm1.ann1.0ZKP.iprscan.gff3.gz +bfa65f3954c688afb2ea4e22a194713b Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/CHANGES.PI_578357.gnm1.ann1.0ZKP.txt +be0b8764fcaf589de55a8e4366a39dc2 Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.cds_primary.fna.gz +61666079f4a4815ccb6dd418e85d148f Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.cds_primary.fna.gz.fai +4962b8f645019eafa3921f664a96333b Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.cds_primary.fna.gz.gzi +8db110084120c5b00eafc81793d882f6 Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.cds.fna.gz +b52812156834ecf906a8dfb0bc5e3007 Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.cds.fna.gz.fai +45e0cde1ada42627e2cf15aa33bca9c2 Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.cds.fna.gz.gzi +e06072c171054a7472bc0134f597e8a7 Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.featid_map.tsv.gz +07c25ea8a1cf5738333ce5d06b337f8a Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.feature.tsv.gz +fabf1a36b2630e5ccb455a9add3b3ef6 Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.gene_models_main.bed.gz +e00d60eed415b13925aa1f6bd805f781 Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.gene_models_main.bed.gz.tbi +6cdad67254facff74becfeaaad2c7c7e Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.gene_models_main.gff3.gz +2d8c87292d18284e00068fb6e57d7715 Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.gene_models_main.gff3.gz.tbi +2545e5b335e402c4f87314212fc1384d Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.iprscan.gff3.gz +0731f204a2b8279ca56421e678b9ba23 Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.iprscan.gff3.gz.tbi +2ba77e3359dd68aba72c7809a3fba993 Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.legfed_v1_0.M65K.gfa.tsv.gz +56c8c6ff34cd0b4092764c82b0267197 Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.mrna.fna.gz +97de06c23d522c84cb96341260ec4c1a Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.mrna.fna.gz.fai +8bbb42d1e30df8d1b1942c8f9b259798 Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.mrna.fna.gz.gzi +3158b3d7522c2121f4ca662d245a427f Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.protein_primary.faa.gz +57cb1e239817039d48382ee7116c48e4 Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.protein_primary.faa.gz.fai +5dd26c4f59ac4fe40ce771c605c0978f Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.protein_primary.faa.gz.gzi +37e31452e2197814f3d4f1faa70926bb Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.protein.faa.gz +24bbe37b713a28668c108e788827525f Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.protein.faa.gz.fai +f034a9282dc8127ca25f2a7ada62d3c2 Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/glyso.PI_578357.gnm1.ann1.0ZKP.protein.faa.gz.gzi +6ae7b0e30a68567cc41fc8ac85183b7b Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/MANIFEST.PI_578357.gnm1.ann1.0ZKP.correspondence.yml +664b6b347b4f3341b47c4f3a9f1cdb7c Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/MANIFEST.PI_578357.gnm1.ann1.0ZKP.descriptions.yml +71baf1fe014039a937170ff695ef3829 Glycine/soja/annotations/PI_578357.gnm1.ann1.0ZKP/README.PI_578357.gnm1.ann1.0ZKP.yml diff --git a/Glycine/soja/annotations/W05.gnm1.ann1.T47J/CHECKSUM.W05.gnm1.ann1.T47J.md5 b/Glycine/soja/annotations/W05.gnm1.ann1.T47J/CHECKSUM.W05.gnm1.ann1.T47J.md5 index f77e7e40..8cffff00 100644 --- a/Glycine/soja/annotations/W05.gnm1.ann1.T47J/CHECKSUM.W05.gnm1.ann1.T47J.md5 +++ b/Glycine/soja/annotations/W05.gnm1.ann1.T47J/CHECKSUM.W05.gnm1.ann1.T47J.md5 @@ -1,35 +1,30 @@ -6cb92a291a53f26ebdca32c89068fcd8 ./glyso.W05.gnm1.ann1.T47J.gene_models_main.gff3.gz -ddc57f42f3cb6ef0efe5ae9d7f1beffd ./README.W05.gnm1.ann1.T47J.yml -b5b0f65239b048d84b9baac98bfbf4a2 ./glyso.W05.gnm1.ann1.T47J.cds.fna.gz -dac231d4559890235f89296f81209eea ./CHANGES.W05.gnm1.ann1.T47J.txt -3a77d74c64ecab8bb392e82dbbea3224 ./busco/glyso.W05.gnm1.ann1.T47J.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.glyso.W05.gnm1.ann1.T47J.protein.faa.gz_busco.txt -6b7f1d1b6a352627282cd670e830b6ee ./busco/glyso.W05.gnm1.ann1.T47J.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.glyso.W05.gnm1.ann1.T47J.protein_primaryTranscript.faa.gz_busco.txt -9e5ac34bdcd4bd679c26bc68857829ac ./glyso.W05.gnm1.ann1.T47J.bad_gene_10G027808.gff3.gz -795448213551d3d5e4b27c3758ee00a3 ./glyso.W05.gnm1.ann1.T47J.cds_primary.fna.gz.fai -27c40e57f3f6e5143319cb4749caa7a6 ./glyso.W05.gnm1.ann1.T47J.protein_primary.faa.gz.fai -7ca0c0a1c4002471661de41c7d6ca866 ./glyso.W05.gnm1.ann1.T47J.mrna.fna.gz.gzi -144d7c46ff8241f991c03551a4c17897 ./glyso.W05.gnm1.ann1.T47J.info.NCBIvsLocal.Seq.ID.map.txt.gz -efda2415e41f5d48cc317224f5f6a13d ./glyso.W05.gnm1.ann1.T47J.cds.fna.gz.fai -1957f41ab5e4749801d84f18fbd63542 ./glyso.W05.gnm1.ann1.T47J.protein.faa.gz.gzi -7e8c4295d3acf53b1289933c7488a114 ./glyso.W05.gnm1.ann1.T47J.cds.fna.gz.gzi -6cc1b9cf215dfe0dd5845e184228b003 ./glyso.W05.gnm1.ann1.T47J.protein.faa.gz.fai -5f36b0096a603a77ec676c762ec600af ./glyso.W05.gnm1.ann1.T47J.protein.faa.gz -9b84458c05d5267584b1a07ef03eac99 ./glyso.W05.gnm1.ann1.T47J.protein_primary.faa.gz.gzi -10568f4fe54ae55dadb933d953d6a05a ./glyso.W05.gnm1.ann1.T47J.legfed_v1_0.M65K.gfa.tsv.gz -53596272d9a75b24e05441037031e684 ./glyso.W05.gnm1.ann1.T47J.mrna.fna.gz.fai -fcaacde93981da336f460574bb4af760 ./glyso.W05.gnm1.ann1.T47J.gene_models_main.bed.gz.tbi -e0927ed33fc7cb126eb8770b8e9ae669 ./glyso.W05.gnm1.ann1.T47J.cds_primary.fna.gz.gzi -1d4e760c78a4e3033a4d2c6aeb3c37b3 ./glyso.W05.gnm1.ann1.T47J.info_annot_InterProScan.txt.gz -e9a7d4e3bcbbdda18b8fdd0544156456 ./glyso.W05.gnm1.ann1.T47J.mrna.fna.gz -779ee1e5f13bfbe721e229c4c34a9a06 ./glyso.W05.gnm1.ann1.T47J.protein_primary.faa.gz -ae4f73a16886d4887c9aae08bc309ee6 ./BUSCO/glyso.W05.gnm1.ann1.T47J.busco.fabales_odb10.full_table.tsv.gz -8ce67614148a0456b2490ceb49b125a2 ./BUSCO/glyso.W05.gnm1.ann1.T47J.busco.fabales_odb10.short_summary.json -7cdb4407babcda69b4925d03a1195278 ./BUSCO/glyso.W05.gnm1.ann1.T47J.busco.fabales_odb10.short_summary.txt -f6f0815fadb52629504f5a3082d72ec6 ./MANIFEST.W05.gnm1.ann1.T47J.correspondence.yml -caed52b542ec2d93caba3dec7a693957 ./MANIFEST.W05.gnm1.ann1.T47J.descriptions.yml -4077d29dda8a99bb1a193d71b4ad8500 ./glyso.W05.gnm1.ann1.T47J.info_gene_annot.txt.gz -b6a9617b817183a662bc925b5368fa34 ./glyso.W05.gnm1.ann1.T47J.gene_models_main.gff3.gz.tbi -de0f70d7938fec6b98f00a8567e83bf6 ./glyso.W05.gnm1.ann1.T47J.info.NCBIvsLocal.gene.ID.map.txt.gz -7f39742aa21d3377c2d871a23f4f49af ./glyso.W05.gnm1.ann1.T47J.cds_primary.fna.gz -94b55e6f81c700b04184ea7b276a7dcd ./glyso.W05.gnm1.ann1.T47J.bad_gene_10G027808.legfed_v1_0.M65K.gfa.tsv.gz -35e0522649f7a89381ce9d8bd21e3c6e ./glyso.W05.gnm1.ann1.T47J.gene_models_main.bed.gz +116754808c8c79495e3b15b04547bc7f Glycine/soja/annotations/W05.gnm1.ann1.T47J/CHANGES.W05.gnm1.ann1.T47J.txt +9e5ac34bdcd4bd679c26bc68857829ac Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.bad_gene_10G027808.gff3.gz +e9dbd68972410d128cc90188a1bea699 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.bad_gene_10G027808.legfed_v1_0.M65K.gfa.tsv.gz +7f39742aa21d3377c2d871a23f4f49af Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.cds_primary.fna.gz +795448213551d3d5e4b27c3758ee00a3 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.cds_primary.fna.gz.fai +e0927ed33fc7cb126eb8770b8e9ae669 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.cds_primary.fna.gz.gzi +b5b0f65239b048d84b9baac98bfbf4a2 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.cds.fna.gz +efda2415e41f5d48cc317224f5f6a13d Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.cds.fna.gz.fai +7e8c4295d3acf53b1289933c7488a114 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.cds.fna.gz.gzi +04047f309bd5171cd55e1827bdcfda9a Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.gene_models_main.bed.gz +187e1db1ce3e26d137ac867eff8f3742 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.gene_models_main.bed.gz.tbi +6cb92a291a53f26ebdca32c89068fcd8 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.gene_models_main.gff3.gz +95d98e78cc0de50a3d028ad8bf06bb10 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.gene_models_main.gff3.gz.tbi +1d4e760c78a4e3033a4d2c6aeb3c37b3 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.info_annot_InterProScan.txt.gz +4077d29dda8a99bb1a193d71b4ad8500 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.info_gene_annot.txt.gz +de0f70d7938fec6b98f00a8567e83bf6 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.info.NCBIvsLocal.gene.ID.map.txt.gz +144d7c46ff8241f991c03551a4c17897 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.info.NCBIvsLocal.Seq.ID.map.txt.gz +ea51bc1c94fc2d1fd950a3bdf04f75f7 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.legfed_v1_0.M65K.gfa.tsv.gz +1a57ba505da1ba4caf7e658f89a07c4d Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.mrna.fna.gz +53596272d9a75b24e05441037031e684 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.mrna.fna.gz.fai +a865e8fa92c902b2017ed51f3d7089c8 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.mrna.fna.gz.gzi +779ee1e5f13bfbe721e229c4c34a9a06 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.protein_primary.faa.gz +27c40e57f3f6e5143319cb4749caa7a6 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.protein_primary.faa.gz.fai +9b84458c05d5267584b1a07ef03eac99 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.protein_primary.faa.gz.gzi +5f36b0096a603a77ec676c762ec600af Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.protein.faa.gz +6cc1b9cf215dfe0dd5845e184228b003 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.protein.faa.gz.fai +1957f41ab5e4749801d84f18fbd63542 Glycine/soja/annotations/W05.gnm1.ann1.T47J/glyso.W05.gnm1.ann1.T47J.protein.faa.gz.gzi +f6f0815fadb52629504f5a3082d72ec6 Glycine/soja/annotations/W05.gnm1.ann1.T47J/MANIFEST.W05.gnm1.ann1.T47J.correspondence.yml +caed52b542ec2d93caba3dec7a693957 Glycine/soja/annotations/W05.gnm1.ann1.T47J/MANIFEST.W05.gnm1.ann1.T47J.descriptions.yml +ddc57f42f3cb6ef0efe5ae9d7f1beffd Glycine/soja/annotations/W05.gnm1.ann1.T47J/README.W05.gnm1.ann1.T47J.yml diff --git a/Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/CHECKSUM.G1974.gnm1.ann1.F257.md5 b/Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/CHECKSUM.G1974.gnm1.ann1.F257.md5 index 1e6c7588..a7dc9940 100644 --- a/Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/CHECKSUM.G1974.gnm1.ann1.F257.md5 +++ b/Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/CHECKSUM.G1974.gnm1.ann1.F257.md5 @@ -1,24 +1,21 @@ -7ecfb92de532f6ab786e1bcb514a8f96 ./glyst.G1974.gnm1.ann1.F257.protein.faa.gz -080b408b149b5bd175901619195a6e43 ./glyst.G1974.gnm1.ann1.F257.cds.fna.gz.gzi -dd14db299758d3054192336d0a72a377 ./glyst.G1974.gnm1.ann1.F257.iprscan.gff3.gz -f32e1ab81b06df9f521cfac06f1f944c ./glyst.G1974.gnm1.ann1.F257.cds.fna.gz -d0289afaeaa7d6f6d5301fc6a9b1ed5b ./glyst.G1974.gnm1.ann1.F257.mrna.fna.gz.fai -2f82dfda7b4ed44eff8f3422d7d662dc ./MANIFEST.G1974.gnm1.ann1.F257.descriptions.yml -2d97bff02fe402b566ea530fec344acc ./glyst.G1974.gnm1.ann1.F257.iprscan.gff3.gz.tbi -2f367e10b5e5b52c7f44cb4e2f445352 ./glyst.G1974.gnm1.ann1.F257.gene_models_main.gff3.gz.tbi -f1c4b56d5cc575d82f95ec3c27b261f9 ./glyst.G1974.gnm1.ann1.F257.protein.faa.gz.gzi -d71482aa3c7410574115686b6f037cef ./MANIFEST.G1974.gnm1.ann1.F257.correspondence.yml -cf00c742f6b496d55908ee2da1c6851f ./glyst.G1974.gnm1.ann1.F257.mrna.fna.gz -b33e3b289b4f0c225d8a2602bfeba59f ./glyst.G1974.gnm1.ann1.F257.protein.faa.gz.fai -e25d69125f398818371381e8e084aa11 ./glyst.G1974.gnm1.ann1.F257.mrna.fna.gz.gzi -3a5d84cee7cb9836bb73e2ca1146fb36 ./glyst.G1974.gnm1.ann1.F257.gene_models_main.gff3.gz -69512cbe08ec28d374ee37f449301c41 ./glyst.G1974.gnm1.ann1.F257.gene_models_orig.gff.gz -3b8a47c2c503ae1477d0ad7b7cae702e ./glyst.G1974.gnm1.ann1.F257.legfed_v1_0.M65K.gfa.tsv.gz -debcfc197d66ccea60dad676686371b7 ./glyst.G1974.gnm1.ann1.F257.gene_models_main.bed.gz.tbi -c47ea7eef73dc078fe9327373801619a ./CHANGES.G1974.gnm1.F257.txt -582e0e2c4f5eb7b88ac92a3f3837e10d ./BUSCO/glyst.G1974.gnm1.ann1.F257.busco.fabales_odb10.full_table.tsv.gz -25d419f502013b969ed3bb3052073956 ./BUSCO/glyst.G1974.gnm1.ann1.F257.busco.fabales_odb10.short_summary.txt -3d1c03d4fd479bb516585119b3bc88b0 ./BUSCO/glyst.G1974.gnm1.ann1.F257.busco.fabales_odb10.short_summary.json -543d74d2ecc0e764eaf21f1889272a4b ./glyst.G1974.gnm1.ann1.F257.cds.fna.gz.fai -0ef0307c0e109a97187cc0e2220e0475 ./glyst.G1974.gnm1.ann1.F257.gene_models_main.bed.gz -22f395d20780accd49bb17b9f861261f ./README.G1974.gnm1.ann1.F257.yml +c47ea7eef73dc078fe9327373801619a Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/CHANGES.G1974.gnm1.F257.txt +f32e1ab81b06df9f521cfac06f1f944c Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.cds.fna.gz +543d74d2ecc0e764eaf21f1889272a4b Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.cds.fna.gz.fai +080b408b149b5bd175901619195a6e43 Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.cds.fna.gz.gzi +323a535e75d4927deccfda678546f448 Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.gene_models_main.bed.gz +1ddd3faf99729343ee82a33d06caed5c Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.gene_models_main.bed.gz.tbi +3a5d84cee7cb9836bb73e2ca1146fb36 Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.gene_models_main.gff3.gz +2f367e10b5e5b52c7f44cb4e2f445352 Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.gene_models_main.gff3.gz.tbi +69512cbe08ec28d374ee37f449301c41 Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.gene_models_orig.gff.gz +dd14db299758d3054192336d0a72a377 Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.iprscan.gff3.gz +2d97bff02fe402b566ea530fec344acc Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.iprscan.gff3.gz.tbi +3b8a47c2c503ae1477d0ad7b7cae702e Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.legfed_v1_0.M65K.gfa.tsv.gz +cf00c742f6b496d55908ee2da1c6851f Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.mrna.fna.gz +d0289afaeaa7d6f6d5301fc6a9b1ed5b Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.mrna.fna.gz.fai +e25d69125f398818371381e8e084aa11 Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.mrna.fna.gz.gzi +7ecfb92de532f6ab786e1bcb514a8f96 Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.protein.faa.gz +b33e3b289b4f0c225d8a2602bfeba59f Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.protein.faa.gz.fai +f1c4b56d5cc575d82f95ec3c27b261f9 Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/glyst.G1974.gnm1.ann1.F257.protein.faa.gz.gzi +d71482aa3c7410574115686b6f037cef Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/MANIFEST.G1974.gnm1.ann1.F257.correspondence.yml +2f82dfda7b4ed44eff8f3422d7d662dc Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/MANIFEST.G1974.gnm1.ann1.F257.descriptions.yml +22f395d20780accd49bb17b9f861261f Glycine/stenophita/annotations/G1974.gnm1.ann1.F257/README.G1974.gnm1.ann1.F257.yml diff --git a/Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/CHECKSUM.G1300.gnm1.ann1.RRK6.md5 b/Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/CHECKSUM.G1300.gnm1.ann1.RRK6.md5 index e7c1b176..3dae0dc4 100644 --- a/Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/CHECKSUM.G1300.gnm1.ann1.RRK6.md5 +++ b/Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/CHECKSUM.G1300.gnm1.ann1.RRK6.md5 @@ -1,24 +1,21 @@ -9df9130e21be3af8f6c77f9ae052ebff ./glysy.G1300.gnm1.ann1.RRK6.gene_models_main.gff3.gz.tbi -f16a76020bb0426aae786751f10eb39f ./glysy.G1300.gnm1.ann1.RRK6.protein.faa.gz.gzi -50565fc2df3e56ac7736c77bb512b9ed ./BUSCO/glysy.G1300.gnm1.ann1.RRK6.busco.fabales_odb10.short_summary.json -755b9290ed510145f71fa05710a58912 ./BUSCO/glysy.G1300.gnm1.ann1.RRK6.busco.fabales_odb10.short_summary.txt -9938bf1a8b6848e5481683a17818ea0a ./BUSCO/glysy.G1300.gnm1.ann1.RRK6.busco.fabales_odb10.full_table.tsv.gz -cbe733059ab47ee49b13d9de6439c4e8 ./glysy.G1300.gnm1.ann1.RRK6.mrna.fna.gz.gzi -10f4fa035b9eb97c379dd79e84848be9 ./glysy.G1300.gnm1.ann1.RRK6.cds.fna.gz -8bcef9162786834bbd81d5b7a3e356ba ./MANIFEST.G1300.gnm1.ann1.RRK6.descriptions.yml -ad96dde27f6bdd122ed8bbbe9466b784 ./glysy.G1300.gnm1.ann1.RRK6.gene_models_main.bed.gz.tbi -646efe9177fe2044dbd78ea8c1e133a0 ./glysy.G1300.gnm1.ann1.RRK6.legfed_v1_0.M65K.gfa.tsv.gz -d70c21a35d034bfa1862b588f93910d0 ./glysy.G1300.gnm1.ann1.RRK6.cds.fna.gz.fai -c47ea7eef73dc078fe9327373801619a ./CHANGES.G1300.gnm1.RRK6.txt -d0eb134930c5ad721c9cce5551c14578 ./glysy.G1300.gnm1.ann1.RRK6.iprscan.gff3.gz -1902f8efd05c584c4effb0320c977565 ./glysy.G1300.gnm1.ann1.RRK6.mrna.fna.gz -56e5e16d9a80e5e26d9b1c769ae962c1 ./glysy.G1300.gnm1.ann1.RRK6.gene_models_orig.gff.gz -bd66429f72ffb6b85035caf39b8ef9a3 ./glysy.G1300.gnm1.ann1.RRK6.cds.fna.gz.gzi -820cbfa853c602e2e4ba21018fe573ca ./README.G1300.gnm1.ann1.RRK6.yml -e9aeb37968d3fd319a0ab1ebaf90bb27 ./glysy.G1300.gnm1.ann1.RRK6.protein.faa.gz -929eb2cd5127b4380e99b59e132da634 ./glysy.G1300.gnm1.ann1.RRK6.mrna.fna.gz.fai -33aabd6e2f749aae1e2262ff044e01d3 ./glysy.G1300.gnm1.ann1.RRK6.gene_models_main.bed.gz -dd0653f817d0b9f96263b2a5a1411bb3 ./glysy.G1300.gnm1.ann1.RRK6.protein.faa.gz.fai -9e6b54890def420c8ea3073554364606 ./glysy.G1300.gnm1.ann1.RRK6.gene_models_main.gff3.gz -1624643f6c919a895b7d92e7835bdda5 ./MANIFEST.G1300.gnm1.ann1.RRK6.correspondence.yml -3bf6464d8f0dc643666edefd41076c30 ./glysy.G1300.gnm1.ann1.RRK6.iprscan.gff3.gz.tbi +c47ea7eef73dc078fe9327373801619a Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/CHANGES.G1300.gnm1.RRK6.txt +10f4fa035b9eb97c379dd79e84848be9 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.cds.fna.gz +d70c21a35d034bfa1862b588f93910d0 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.cds.fna.gz.fai +bd66429f72ffb6b85035caf39b8ef9a3 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.cds.fna.gz.gzi +b6e7939aa5cae09e3a2bf80e87cf9f75 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.gene_models_main.bed.gz +affcaafdcf257dd8869d22c720752922 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.gene_models_main.bed.gz.tbi +9e6b54890def420c8ea3073554364606 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.gene_models_main.gff3.gz +9df9130e21be3af8f6c77f9ae052ebff Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.gene_models_main.gff3.gz.tbi +56e5e16d9a80e5e26d9b1c769ae962c1 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.gene_models_orig.gff.gz +d0eb134930c5ad721c9cce5551c14578 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.iprscan.gff3.gz +3bf6464d8f0dc643666edefd41076c30 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.iprscan.gff3.gz.tbi +646efe9177fe2044dbd78ea8c1e133a0 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.legfed_v1_0.M65K.gfa.tsv.gz +1902f8efd05c584c4effb0320c977565 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.mrna.fna.gz +929eb2cd5127b4380e99b59e132da634 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.mrna.fna.gz.fai +cbe733059ab47ee49b13d9de6439c4e8 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.mrna.fna.gz.gzi +e9aeb37968d3fd319a0ab1ebaf90bb27 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.protein.faa.gz +dd0653f817d0b9f96263b2a5a1411bb3 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.protein.faa.gz.fai +f16a76020bb0426aae786751f10eb39f Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/glysy.G1300.gnm1.ann1.RRK6.protein.faa.gz.gzi +1624643f6c919a895b7d92e7835bdda5 Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/MANIFEST.G1300.gnm1.ann1.RRK6.correspondence.yml +8bcef9162786834bbd81d5b7a3e356ba Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/MANIFEST.G1300.gnm1.ann1.RRK6.descriptions.yml +820cbfa853c602e2e4ba21018fe573ca Glycine/syndetika/annotations/G1300.gnm1.ann1.RRK6/README.G1300.gnm1.ann1.RRK6.yml diff --git a/Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/CHECKSUM.Highworth.gnm1.ann1.HJ3B.md5 b/Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/CHECKSUM.Highworth.gnm1.ann1.HJ3B.md5 index 77d01580..f4cb6379 100644 --- a/Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/CHECKSUM.Highworth.gnm1.ann1.HJ3B.md5 +++ b/Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/CHECKSUM.Highworth.gnm1.ann1.HJ3B.md5 @@ -1,21 +1,19 @@ -1c26b3fa070f54f5e0bb6f30b70d34e1 ./labpu.Highworth.gnm1.ann1.HJ3B.mrna_primary.fna.gz -0c6ebde14b008dbce712d7684204d369 ./labpu.Highworth.gnm1.ann1.HJ3B.iprscan.gff3.gz -395ede9c8e98738a96bd9d2a4dbe25f5 ./README.Highworth.gnm1.ann1.HJ3B.yml -5d62e219691f4196407ed23e7963b974 ./labpu.Highworth.gnm1.ann1.HJ3B.cds.bed.gz -0cf093b880465d5f049b551119a865b2 ./MANIFEST.Highworth.gnm1.ann1.HJ3B.descriptions.yml -23a86c7a8c933bcc15992ebd56edb3f9 ./labpu.Highworth.gnm1.ann1.HJ3B.protein_primary.faa.gz -8e10f03da9fa6d1c2788db114eb06a43 ./labpu.Highworth.gnm1.ann1.HJ3B.cds_primary.fna.gz -fd8796ea9dd1b6c21dc79aa3594b5c1e ./BUSCO/labpu.Highworth.gnm1.ann1.HJ3B.busco.fabales_odb10.full_table.tsv.gz -533e5fc26841f2acb4f8eef305d50f3a ./BUSCO/labpu.Highworth.gnm1.ann1.HJ3B.busco.fabales_odb10.short_summary.txt -5c6963bd1c5c62398887a4b452b97dde ./BUSCO/labpu.Highworth.gnm1.ann1.HJ3B.busco.fabales_odb10.short_summary.json -1c26b3fa070f54f5e0bb6f30b70d34e1 ./labpu.Highworth.gnm1.ann1.HJ3B.mrna.fna.gz -23a86c7a8c933bcc15992ebd56edb3f9 ./labpu.Highworth.gnm1.ann1.HJ3B.protein.faa.gz -3c31129f05c97dc9af0775f59d57de3d ./labpu.Highworth.gnm1.ann1.HJ3B.iprscan.gff3.gz.tbi -3fe95373b6310b1808739fe6a91cffa9 ./CHANGES.Highworth.gnm1.ann1.HJ3B.txt -a897465c2336ed03900cc6ba3bd9bf97 ./labpu.Highworth.gnm1.ann1.HJ3B.gene_models_main.gff3.gz -90bee5bdcbde1ea4ca6c5a1e1d9619b9 ./labpu.Highworth.gnm1.ann1.HJ3B.gene_models_main.gff3.gz.tbi -dfd66923f401dcbf8520e7d7ffdce908 ./labpu.Highworth.gnm1.ann1.HJ3B.gene_models_with-TEs.longest.gff3.gz -d787078e7781a1f87eb30408d28b1f14 ./labpu.Highworth.gnm1.ann1.HJ3B.legfed_v1_0.M65K.gfa.tsv.gz -b647196bc6c9576f34664debb3f0e079 ./labpu.Highworth.gnm1.ann1.HJ3B.featid_map.tsv.gz -8e10f03da9fa6d1c2788db114eb06a43 ./labpu.Highworth.gnm1.ann1.HJ3B.cds.fna.gz -f1cef7ca6047d9dcaa784faf5952f950 ./MANIFEST.Highworth.gnm1.ann1.HJ3B.correspondence.yml +3fe95373b6310b1808739fe6a91cffa9 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/CHANGES.Highworth.gnm1.ann1.HJ3B.txt +8e10f03da9fa6d1c2788db114eb06a43 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/labpu.Highworth.gnm1.ann1.HJ3B.cds_primary.fna.gz +8e10f03da9fa6d1c2788db114eb06a43 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/labpu.Highworth.gnm1.ann1.HJ3B.cds.fna.gz +b647196bc6c9576f34664debb3f0e079 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/labpu.Highworth.gnm1.ann1.HJ3B.featid_map.tsv.gz +f1b2446c79dffa9bd10848865aaf8a80 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/labpu.Highworth.gnm1.ann1.HJ3B.gene_models_main.bed.gz +c1307446c4ed3ba8b8b5271694bb8c36 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/labpu.Highworth.gnm1.ann1.HJ3B.gene_models_main.bed.gz.tbi +a897465c2336ed03900cc6ba3bd9bf97 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/labpu.Highworth.gnm1.ann1.HJ3B.gene_models_main.gff3.gz +90bee5bdcbde1ea4ca6c5a1e1d9619b9 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/labpu.Highworth.gnm1.ann1.HJ3B.gene_models_main.gff3.gz.tbi +dfd66923f401dcbf8520e7d7ffdce908 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/labpu.Highworth.gnm1.ann1.HJ3B.gene_models_with-TEs.longest.gff3.gz +0c6ebde14b008dbce712d7684204d369 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/labpu.Highworth.gnm1.ann1.HJ3B.iprscan.gff3.gz +3c31129f05c97dc9af0775f59d57de3d Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/labpu.Highworth.gnm1.ann1.HJ3B.iprscan.gff3.gz.tbi +d787078e7781a1f87eb30408d28b1f14 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/labpu.Highworth.gnm1.ann1.HJ3B.legfed_v1_0.M65K.gfa.tsv.gz +1c26b3fa070f54f5e0bb6f30b70d34e1 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/labpu.Highworth.gnm1.ann1.HJ3B.mrna_primary.fna.gz +1c26b3fa070f54f5e0bb6f30b70d34e1 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/labpu.Highworth.gnm1.ann1.HJ3B.mrna.fna.gz +23a86c7a8c933bcc15992ebd56edb3f9 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/labpu.Highworth.gnm1.ann1.HJ3B.protein_primary.faa.gz +23a86c7a8c933bcc15992ebd56edb3f9 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/labpu.Highworth.gnm1.ann1.HJ3B.protein.faa.gz +f1cef7ca6047d9dcaa784faf5952f950 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/MANIFEST.Highworth.gnm1.ann1.HJ3B.correspondence.yml +0cf093b880465d5f049b551119a865b2 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/MANIFEST.Highworth.gnm1.ann1.HJ3B.descriptions.yml +395ede9c8e98738a96bd9d2a4dbe25f5 Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B/README.Highworth.gnm1.ann1.HJ3B.yml diff --git a/Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/CHECKSUM.CDC_Redberry.gnm2.ann1.5FB4.md5 b/Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/CHECKSUM.CDC_Redberry.gnm2.ann1.5FB4.md5 index 5100253b..3ce90e92 100644 --- a/Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/CHECKSUM.CDC_Redberry.gnm2.ann1.5FB4.md5 +++ b/Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/CHECKSUM.CDC_Redberry.gnm2.ann1.5FB4.md5 @@ -1,18 +1,17 @@ -8f15057dca6d4b59851247c8d5f09de3 ./lencu.CDC_Redberry.gnm2.ann1.5FB4.legfed_v1_0.M65K.gfa.tsv.gz -f20bd5b019edbd7c1a7d36b76cf62e47 ./lencu.CDC_Redberry.gnm2.ann1.5FB4.gene_models_main.gff3.gz.csi -661e17d002849880508fde14b5d1353f ./lencu.CDC_Redberry.gnm2.ann1.5FB4.gene_models_main.gff3.gz -43cf68b15eb163472880f11f201dd444 ./lencu.CDC_Redberry.gnm2.ann1.5FB4.cds.bed.gz -7cf18aa8ebe2b02af795647cde60b4ff ./lencu.CDC_Redberry.gnm2.ann1.5FB4.protein.faa.gz.gzi -f1d2ce616ed49fee47d77c68f795380e ./lencu.CDC_Redberry.gnm2.ann1.5FB4.cds.fna.gz.fai -abe2cbca313794cb99aa204515ac7422 ./lencu.CDC_Redberry.gnm2.ann1.5FB4.id_map -fd1303fe0902036fb5bc74c2a2938892 ./lencu.CDC_Redberry.gnm2.ann1.5FB4.mrna.fna.gz.gzi -f4691ccdacc8fd5ade06f58535843688 ./README.CDC_Redberry.gnm2.ann1.5FB4.yml -eada5690c41ec9611f4b3a79771aa9a4 ./lencu.CDC_Redberry.gnm2.ann1.5FB4.mrna.fna.gz.fai -9b5391fe14d15823716cd349bad29741 ./lencu.CDC_Redberry.gnm2.ann1.5FB4.iprscan.gff3.gz.tbi -ed14025af85fb3a9fd2f19589111de1e ./lencu.CDC_Redberry.gnm2.ann1.5FB4.cds.fna.gz.gzi -3a992115328ddf5801d3667fc160cd2d ./lencu.CDC_Redberry.gnm2.ann1.5FB4.protein.faa.gz -ca1f81c1c7b50d855fab6a8e91dcb0a5 ./lencu.CDC_Redberry.gnm2.ann1.5FB4.iprscan.gff3.gz -0aa083eab66b5e53eff26704f87ef5d7 ./lencu.CDC_Redberry.gnm2.ann1.5FB4.mrna.fna.gz -74fe894ef6c512c6b2c95026378e32fe ./lencu.CDC_Redberry.gnm2.ann1.5FB4.protein.faa.gz.fai -3b33047af7fb3528236b9887e5d6001b ./lencu.CDC_Redberry.gnm2.ann1.5FB4.cds.fna.gz -9320887f1f81650c6c6e2c146c9df727 ./lencu.CDC_Redberry.gnm2.ann1.5FB4.cds.bed.gz.csi +3b33047af7fb3528236b9887e5d6001b Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.cds.fna.gz +f1d2ce616ed49fee47d77c68f795380e Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.cds.fna.gz.fai +ed14025af85fb3a9fd2f19589111de1e Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.cds.fna.gz.gzi +96e6d5f9ae190aee3dad6491bca35cbe Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.gene_models_main.bed.gz +661e17d002849880508fde14b5d1353f Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.gene_models_main.gff3.gz +f20bd5b019edbd7c1a7d36b76cf62e47 Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.gene_models_main.gff3.gz.csi +abe2cbca313794cb99aa204515ac7422 Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.id_map +ca1f81c1c7b50d855fab6a8e91dcb0a5 Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.iprscan.gff3.gz +9b5391fe14d15823716cd349bad29741 Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.iprscan.gff3.gz.tbi +8f15057dca6d4b59851247c8d5f09de3 Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.legfed_v1_0.M65K.gfa.tsv.gz +0aa083eab66b5e53eff26704f87ef5d7 Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.mrna.fna.gz +eada5690c41ec9611f4b3a79771aa9a4 Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.mrna.fna.gz.fai +fd1303fe0902036fb5bc74c2a2938892 Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.mrna.fna.gz.gzi +3a992115328ddf5801d3667fc160cd2d Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.protein.faa.gz +74fe894ef6c512c6b2c95026378e32fe Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.protein.faa.gz.fai +7cf18aa8ebe2b02af795647cde60b4ff Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/lencu.CDC_Redberry.gnm2.ann1.5FB4.protein.faa.gz.gzi +2b4a50b87d422ace01762a40fa8e7b80 Lens/culinaris/annotations/CDC_Redberry.gnm2.ann1.5FB4/README.CDC_Redberry.gnm2.ann1.5FB4.yml diff --git a/Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/CHECKSUM.IG_72815.gnm1.ann1.R90F.md5 b/Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/CHECKSUM.IG_72815.gnm1.ann1.R90F.md5 index 5030e372..e871eada 100644 --- a/Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/CHECKSUM.IG_72815.gnm1.ann1.R90F.md5 +++ b/Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/CHECKSUM.IG_72815.gnm1.ann1.R90F.md5 @@ -1,18 +1,18 @@ -e3272156f4f8662abf5cb410767b27a6 ./lener.IG_72815.gnm1.ann1.R90F.mrna.fna.gz -39bdffab00eee38c20ba83f602ffa2a6 ./lener.IG_72815.gnm1.ann1.R90F.iprscan.gff3.gz -ed60645256fa5e6915937700b1acc859 ./lener.IG_72815.gnm1.ann1.R90F.iprscan.gff3.gz.tbi -1c8aef304cc1a079cc6ba2e1060ab7b2 ./lener.IG_72815.gnm1.ann1.R90F.cds.fna.gz.fai -63fd4887d1031591113fb4379241007d ./lener.IG_72815.gnm1.ann1.R90F.legfed_v1_0.M65K.gfa.tsv.gz -f752d03fc3d683d1df859ed20e03f51c ./lener.IG_72815.gnm1.ann1.R90F.mrna.fna.gz.fai -055ec40a041cfb0b737892efba49f090 ./lener.IG_72815.gnm1.ann1.R90F.protein.faa.gz.fai -f004acadb6fcb0930595dedd95afdd9b ./lener.IG_72815.gnm1.ann1.R90F.cds.fna.gz -c3b6365e59cdf83622265c263a1b4b7d ./lener.IG_72815.gnm1.ann1.R90F.gene_models_main.gff3.gz -d2b4958bfd1844ed6df9617a2456d4eb ./README.IG_72815.gnm1.ann1.R90F.yml -8a12f4d3bf44aa894785b1bceafbc84b ./lener.IG_72815.gnm1.ann1.R90F.mrna.fna.gz.gzi -e493dd66d22338e36f4d1d6a3bd896bc ./lener.IG_72815.gnm1.ann1.R90F.protein.faa.gz.gzi -59f55963a2e06d3f6e4dc5d80b9ae98b ./lener.IG_72815.gnm1.ann1.R90F.id_map -1de166346eff1785d74b093fb3138a0f ./lener.IG_72815.gnm1.ann1.R90F.protein.faa.gz -822bfdc9fed5bc0b31adf19697cd14e3 ./lener.IG_72815.gnm1.ann1.R90F.cds.fna.gz.gzi -2ed9884f58381ca4b114231cd0b79e3e ./lener.IG_72815.gnm1.ann1.R90F.cds.bed.gz -edbd2bf92d8e91a8558a80c344fb53fc ./lener.IG_72815.gnm1.ann1.R90F.gene_models_main.gff3.gz.tbi -312dfc28cd002d7d49e3b7d433f3c6ea ./lener.IG_72815.gnm1.ann1.R90F.cds.bed.gz.tbi +f004acadb6fcb0930595dedd95afdd9b Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.cds.fna.gz +1c8aef304cc1a079cc6ba2e1060ab7b2 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.cds.fna.gz.fai +822bfdc9fed5bc0b31adf19697cd14e3 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.cds.fna.gz.gzi +b64e9ff16d7228d13a01446823cbd7c6 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.gene_models_main.bed.gz +453d02df954f8186343bdeef68b4f1e2 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.gene_models_main.bed.gz.tbi +c3b6365e59cdf83622265c263a1b4b7d Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.gene_models_main.gff3.gz +edbd2bf92d8e91a8558a80c344fb53fc Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.gene_models_main.gff3.gz.tbi +59f55963a2e06d3f6e4dc5d80b9ae98b Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.id_map +39bdffab00eee38c20ba83f602ffa2a6 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.iprscan.gff3.gz +ed60645256fa5e6915937700b1acc859 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.iprscan.gff3.gz.tbi +63fd4887d1031591113fb4379241007d Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.legfed_v1_0.M65K.gfa.tsv.gz +e3272156f4f8662abf5cb410767b27a6 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.mrna.fna.gz +f752d03fc3d683d1df859ed20e03f51c Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.mrna.fna.gz.fai +8a12f4d3bf44aa894785b1bceafbc84b Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.mrna.fna.gz.gzi +1de166346eff1785d74b093fb3138a0f Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.protein.faa.gz +055ec40a041cfb0b737892efba49f090 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.protein.faa.gz.fai +e493dd66d22338e36f4d1d6a3bd896bc Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/lener.IG_72815.gnm1.ann1.R90F.protein.faa.gz.gzi +bc44a672285d14ad2257cdbd1da832f4 Lens/ervoides/annotations/IG_72815.gnm1.ann1.R90F/README.IG_72815.gnm1.ann1.R90F.yml diff --git a/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 b/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 index bee1611d..0591ea43 100644 --- a/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 +++ b/Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHECKSUM.MG20.gnm3.ann1.WF9B.md5 @@ -1,40 +1,35 @@ -32b50f4c3f40a03060ffd68d694b11b8 ./lotja.MG20.gnm3.ann1.WF9B.phytozome_10_2.HFNR.gfa.tsv.gz -c5bc2255302e295b1cb881477292e49b ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz.fai -d8414faa697d19526b4f8d561ab2057c ./lotja.MG20.gnm3.ann1.WF9B.cds.fna.gz -a94d0a2a457e1a91dd0567ebb5af4aad ./MANIFEST.MG20.gnm3.ann1.WF9B.descriptions.yml -178d6d4771232495fb8c6ce4b1380c30 ./lotja.MG20.gnm3.ann1.WF9B.legfed_v1_0.M65K.gfa.tsv.gz -6abb20bed1d11f3c32e389ffe3009f70 ./BUSCO/lotja.MG20.gnm3.ann1.WF9B.busco.fabales_odb10.short_summary.json -af48a6a3067676e64bbe5feccc8bf82c ./BUSCO/lotja.MG20.gnm3.ann1.WF9B.busco.fabales_odb10.full_table.tsv.gz -94540a0f478549c95d66116f2fd22e20 ./BUSCO/lotja.MG20.gnm3.ann1.WF9B.busco.fabales_odb10.short_summary.txt -be4d39d7d00827e593086c42670f774b ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.gz.tbi -d8371d190f4a02434bfa5c70811bce07 ./lotja.MG20.gnm3.ann1.WF9B.low_quality_transcript.fna.gz -29c2a503c3f5ecf5d0319474be638faf ./lotja.MG20.gnm3.ann1.WF9B.iprscan.gff3.gz -0f4b8875dc5eac37ab04067d9ac353bd ./lotja.MG20.gnm3.ann1.WF9B.cds.fna.gz.fai -bae609ed62c4a2430a23c6b39fe98a78 ./lotja.MG20.gnm3.ann1.WF9B.protein_primary.faa.gz.gzi -bcf6571e9602ea2571cb96104cebc911 ./lotja.MG20.gnm3.ann1.WF9B.cds_primary.fna.gz.fai -fff8da64f2ca1049414955cc900c8dd3 ./lotja.MG20.gnm3.ann1.WF9B.iprscan.gff3.gz.tbi -aa47dea5dee7778458ad1cc83c2b652f ./lotja.MG20.gnm3.ann1.WF9B.low_quality_genes.gff3.gz -04ca2a7feefa865c2cce950f9ef777d9 ./MANIFEST.MG20.gnm3.ann1.WF9B.correspondence.yml -bd8912360530a39594ca0b90d4518739 ./lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz.gzi -d29e6d07b271ca7fcab508fd40ccfb92 ./lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz.gzi -7805202b1ce34186b7d836ce8cd0c293 ./CHANGES.MG20.gnm3.ann1.WF9B.txt -59ee78058292cba9dfdd256d0a9e8199 ./lotja.MG20.gnm3.ann1.WF9B.low_quality_transcript.fna.gz.gzi -a479089148a37e1f12cb821ca226ed27 ./README.MG20.gnm3.ann1.WF9B.yml -bd2eac01e3a575e751d1bc5097ab270f ./lotja.MG20.gnm3.ann1.WF9B.low_quality_transcript.fna.gz.fai -69b9679a0c98087c7feffaf25e39c05c ./lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.gz -14494f897352153ccf78b0d58098f028 ./lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz.fai -10d099ed82e17814e42d59639d23bca5 ./lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz.fai -5a31d9512c4d06a3f2f0ba5483481364 ./lotja.MG20.gnm3.ann1.WF9B.protein_primary.faa.gz.fai -3ede040635d721583742c7f8003b37ca ./lotja.MG20.gnm3.ann1.WF9B.cds_primary.fna.gz.gzi -462d3c3f4f37203c4a2d90c63b7db1a0 ./lotja.MG20.gnm3.ann1.WF9B.protein_primary.faa.gz -edcd471f6581812b06a2689de9765d0c ./lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz -3ca43ad5258c870a7a634850bcb8262b ./lotja.MG20.gnm3.ann1.WF9B.cds.fna.gz.gzi -c19427187eff0d55d6b3cf107343e356 ./lotja.MG20.gnm3.ann1.WF9B.cds_primary.fna.gz -111a042d11c407346ea7a0565ea04ce0 ./lotja.MG20.gnm3.ann1.WF9B.low_quality_genes.gff3.gz.tbi -a89c30ad3c5bb3053d73ffcebfd4dd5c ./lotja.MG20.gnm3.ann1.WF9B.cds.bed.gz -4f0eab280c3d45280a0e3f4568a3a3d9 ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz -701e5248fb4d2e5ba1ed96e240097d92 ./lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz -90af351bb871b8015cc6d2b93ba34082 ./busco/lotja.MG20.gnm3.ann1.WF9B.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.lotja.MG20.gnm3.ann1.WF9B.protein_primaryTranscript.faa.gz_busco.txt -8b9080a966db35006b229c98419df296 ./busco/lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz_busco.txt -8932bdd1a21c4e766eda349f68d59f43 ./lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz.gzi -4e67c29201e0785618471f9b8bf5ee23 ./lotja.MG20.gnm3.ann1.WF9B.cds.bed.gz.tbi +7805202b1ce34186b7d836ce8cd0c293 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/CHANGES.MG20.gnm3.ann1.WF9B.txt +c19427187eff0d55d6b3cf107343e356 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.cds_primary.fna.gz +bcf6571e9602ea2571cb96104cebc911 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.cds_primary.fna.gz.fai +3ede040635d721583742c7f8003b37ca Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.cds_primary.fna.gz.gzi +d8414faa697d19526b4f8d561ab2057c Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.cds.fna.gz +0f4b8875dc5eac37ab04067d9ac353bd Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.cds.fna.gz.fai +3ca43ad5258c870a7a634850bcb8262b Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.cds.fna.gz.gzi +c4bca1af92659c6d97a445beadc24498 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.gene_models_main.bed.gz +921f1d1fb3edc91dac8d625d4cd37b7e Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.gene_models_main.bed.gz.tbi +69b9679a0c98087c7feffaf25e39c05c Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.gz +be4d39d7d00827e593086c42670f774b Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.gene_models_main.gff3.gz.tbi +29c2a503c3f5ecf5d0319474be638faf Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.iprscan.gff3.gz +fff8da64f2ca1049414955cc900c8dd3 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.iprscan.gff3.gz.tbi +178d6d4771232495fb8c6ce4b1380c30 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.legfed_v1_0.M65K.gfa.tsv.gz +aa47dea5dee7778458ad1cc83c2b652f Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.low_quality_genes.gff3.gz +111a042d11c407346ea7a0565ea04ce0 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.low_quality_genes.gff3.gz.tbi +d8371d190f4a02434bfa5c70811bce07 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.low_quality_transcript.fna.gz +bd2eac01e3a575e751d1bc5097ab270f Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.low_quality_transcript.fna.gz.fai +59ee78058292cba9dfdd256d0a9e8199 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.low_quality_transcript.fna.gz.gzi +701e5248fb4d2e5ba1ed96e240097d92 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz +14494f897352153ccf78b0d58098f028 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz.fai +bd8912360530a39594ca0b90d4518739 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.mrna_primary.fna.gz.gzi +4f0eab280c3d45280a0e3f4568a3a3d9 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz +c5bc2255302e295b1cb881477292e49b Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz.fai +8932bdd1a21c4e766eda349f68d59f43 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.mrna.fna.gz.gzi +32b50f4c3f40a03060ffd68d694b11b8 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.phytozome_10_2.HFNR.gfa.tsv.gz +462d3c3f4f37203c4a2d90c63b7db1a0 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.protein_primary.faa.gz +5a31d9512c4d06a3f2f0ba5483481364 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.protein_primary.faa.gz.fai +bae609ed62c4a2430a23c6b39fe98a78 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.protein_primary.faa.gz.gzi +edcd471f6581812b06a2689de9765d0c Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz +10d099ed82e17814e42d59639d23bca5 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz.fai +d29e6d07b271ca7fcab508fd40ccfb92 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/lotja.MG20.gnm3.ann1.WF9B.protein.faa.gz.gzi +04ca2a7feefa865c2cce950f9ef777d9 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/MANIFEST.MG20.gnm3.ann1.WF9B.correspondence.yml +a94d0a2a457e1a91dd0567ebb5af4aad Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/MANIFEST.MG20.gnm3.ann1.WF9B.descriptions.yml +a479089148a37e1f12cb821ca226ed27 Lotus/japonicus/annotations/MG20.gnm3.ann1.WF9B/README.MG20.gnm3.ann1.WF9B.yml diff --git a/Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/CHECKSUM.Amiga.gnm1.ann1.3GKS.md5 b/Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/CHECKSUM.Amiga.gnm1.ann1.3GKS.md5 index f6ae4642..90e89d8d 100644 --- a/Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/CHECKSUM.Amiga.gnm1.ann1.3GKS.md5 +++ b/Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/CHECKSUM.Amiga.gnm1.ann1.3GKS.md5 @@ -1,23 +1,19 @@ -1290613d353dc311e4723761cb39242d ./lupal.Amiga.gnm1.ann1.3GKS.mrna.fna.gz.gzi -1f19c404c20c4bbe9887d4d67a55e0d2 ./lupal.Amiga.gnm1.ann1.3GKS.legfed_v1_0.M65K.pathway.tsv.gz -8ff3a04d7db88f998c93531858e06848 ./lupal.Amiga.gnm1.ann1.3GKS.cds.fna.gz.fai -d10b4160b2448617e0521e58ccd3749e ./lupal.Amiga.gnm1.ann1.3GKS.gene_models_main.gff3.gz.tbi -e49ccb7b56af04249f162f7e6f72ebd4 ./CHANGES.Amiga.gnm1.ann1.3GKS.txt -758b4f521c91f7d8cb06adcaaf11c43a ./lupal.Amiga.gnm1.ann1.3GKS.legfed_v1_0.M65K.gfa.tsv.gz -02703fc2920ddebeb8cfe072e3e0c1c6 ./lupal.Amiga.gnm1.ann1.3GKS.protein.faa.gz.gzi -916147477f6abf01a5569b91859a77b8 ./lupal.Amiga.gnm1.ann1.3GKS.gene_models_main.gff3.gz -43aa1c01b496ae73f24c82f0c3b17b31 ./lupal.Amiga.gnm1.ann1.3GKS.cds.fna.gz -d87aae2eb90196293ecf6eae8532a6fc ./curation_notes.txt -f537571ea6461599ffb65f9d2602bd83 ./lupal.Amiga.gnm1.ann1.3GKS.cds.bed.gz.tbi -46347e2a50943926a90e05b8be87be6e ./MANIFEST.Amiga.gnm1.ann1.3GKS.correspondence.yml -02a9018cd249759556095a89c5a7211c ./lupal.Amiga.gnm1.ann1.3GKS.protein.faa.gz.fai -a89cab92ac97df975d5e589bad252d22 ./lupal.Amiga.gnm1.ann1.3GKS.cds.bed.gz -5d3153a6993c833960a02911130d26b7 ./MANIFEST.Amiga.gnm1.ann1.3GKS.descriptions.yml -cc24f0d720b6a9d1feb1641dbdf272b5 ./README.Amiga.gnm1.ann1.3GKS.yml -d502fcb067cc29ebfc05218fb3059412 ./lupal.Amiga.gnm1.ann1.3GKS.protein.faa.gz -57e29254e78d031449f4aa6234780e1a ./BUSCO/lupal.Amiga.gnm1.ann1.3GKS.busco.fabales_odb10.short_summary.txt -c58f0ff990ef8ed1e41828cc02f97e21 ./BUSCO/lupal.Amiga.gnm1.ann1.3GKS.busco.fabales_odb10.full_table.tsv.gz -1c6b9f93443564d98216dad5052ba8ad ./BUSCO/lupal.Amiga.gnm1.ann1.3GKS.busco.fabales_odb10.short_summary.json -ad4b3e5ba91646d285513667e25d63de ./lupal.Amiga.gnm1.ann1.3GKS.mrna.fna.gz -524423cec1394fcb79bd292416e5aa2c ./lupal.Amiga.gnm1.ann1.3GKS.cds.fna.gz.gzi -c2f5a353c739d7e7962c660f9c36b685 ./lupal.Amiga.gnm1.ann1.3GKS.mrna.fna.gz.fai +e49ccb7b56af04249f162f7e6f72ebd4 Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/CHANGES.Amiga.gnm1.ann1.3GKS.txt +d87aae2eb90196293ecf6eae8532a6fc Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/curation_notes.txt +43aa1c01b496ae73f24c82f0c3b17b31 Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/lupal.Amiga.gnm1.ann1.3GKS.cds.fna.gz +8ff3a04d7db88f998c93531858e06848 Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/lupal.Amiga.gnm1.ann1.3GKS.cds.fna.gz.fai +524423cec1394fcb79bd292416e5aa2c Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/lupal.Amiga.gnm1.ann1.3GKS.cds.fna.gz.gzi +3b7cafe5bfca67cf40248b87062e5c31 Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/lupal.Amiga.gnm1.ann1.3GKS.gene_models_main.bed.gz +ea23ac781534a2ed41008ff177155aa1 Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/lupal.Amiga.gnm1.ann1.3GKS.gene_models_main.bed.gz.tbi +916147477f6abf01a5569b91859a77b8 Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/lupal.Amiga.gnm1.ann1.3GKS.gene_models_main.gff3.gz +d10b4160b2448617e0521e58ccd3749e Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/lupal.Amiga.gnm1.ann1.3GKS.gene_models_main.gff3.gz.tbi +758b4f521c91f7d8cb06adcaaf11c43a Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/lupal.Amiga.gnm1.ann1.3GKS.legfed_v1_0.M65K.gfa.tsv.gz +ad4b3e5ba91646d285513667e25d63de Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/lupal.Amiga.gnm1.ann1.3GKS.mrna.fna.gz +c2f5a353c739d7e7962c660f9c36b685 Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/lupal.Amiga.gnm1.ann1.3GKS.mrna.fna.gz.fai +1290613d353dc311e4723761cb39242d Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/lupal.Amiga.gnm1.ann1.3GKS.mrna.fna.gz.gzi +d502fcb067cc29ebfc05218fb3059412 Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/lupal.Amiga.gnm1.ann1.3GKS.protein.faa.gz +02a9018cd249759556095a89c5a7211c Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/lupal.Amiga.gnm1.ann1.3GKS.protein.faa.gz.fai +02703fc2920ddebeb8cfe072e3e0c1c6 Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/lupal.Amiga.gnm1.ann1.3GKS.protein.faa.gz.gzi +46347e2a50943926a90e05b8be87be6e Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/MANIFEST.Amiga.gnm1.ann1.3GKS.correspondence.yml +5d3153a6993c833960a02911130d26b7 Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/MANIFEST.Amiga.gnm1.ann1.3GKS.descriptions.yml +cc24f0d720b6a9d1feb1641dbdf272b5 Lupinus/albus/annotations/Amiga.gnm1.ann1.3GKS/README.Amiga.gnm1.ann1.3GKS.yml diff --git a/Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/CHECKSUM.Tanjil.gnm1.ann1.nnV9.md5 b/Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/CHECKSUM.Tanjil.gnm1.ann1.nnV9.md5 index d0a67f04..89fcd5a7 100644 --- a/Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/CHECKSUM.Tanjil.gnm1.ann1.nnV9.md5 +++ b/Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/CHECKSUM.Tanjil.gnm1.ann1.nnV9.md5 @@ -1,30 +1,25 @@ -672e1a00ed0dc35ec73c94816d675e70 ./lupan.Tanjil.gnm1.ann1.nnV9.gene_models_snRNA.gff3.gz -d0aa61cc3a4299138d7bed81de0a3be4 ./README.Tanjil.gnm1.ann1.nnV9.yml -64f3d583adde9b32a9cd9424c045a133 ./lupan.Tanjil.gnm1.ann1.nnV9.gene_models_main.gff3.gz.tbi -e7afe368995cd564cfdf4be1e4fc7924 ./lupan.Tanjil.gnm1.ann1.nnV9.cds.fna.gz -dbb359aa4e76361d092eae4c745d76e6 ./lupan.Tanjil.gnm1.ann1.nnV9.gene_models.gff3.gz -1d8dbd3f88b645f0531b93fc68dea280 ./busco/lupan.Tanjil.gnm1.ann1.nnV9.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.lupan.Tanjil.gnm1.ann1.nnV9.protein.faa.gz_busco.txt -bbc881277fac163b964b24d227a8632d ./lupan.Tanjil.gnm1.ann1.nnV9.mrna.fna.gz.gzi -1d583273c0b7c5b7cbee8d8cc6a1b180 ./lupan.Tanjil.gnm1.ann1.nnV9.legfed_v1_0.M65K.gfa.tsv.gz -aac34b05e9110bf0c329092c34498409 ./lupan.Tanjil.gnm1.ann1.nnV9.gene_models_miRNA.gff3.gz -f359fa14763ade2352c236dadc6ea49b ./lupan.Tanjil.gnm1.ann1.nnV9.gene_models_main.gff3.gz -c4781e409907b7413c511499da271e64 ./lupan.Tanjil.gnm1.ann1.nnV9.protein.faa.gz.fai -6094ffaded2e597d378fc4286f724dd4 ./lupan.Tanjil.gnm1.ann1.nnV9.rgene_models_RNA.gff3.gz -5fafa7dc5063a8ae80dcf0b897b0c7e5 ./MANIFEST.Tanjil.gnm1.ann1.nnV9.correspondence.yml -eb031b1b6ffa361dcdba64df8217fa18 ./lupan.Tanjil.gnm1.ann1.nnV9.cds.fna.gz.fai -8eaa040db1fe5b959eb4a6203adf0ed3 ./lupan.Tanjil.gnm1.ann1.nnV9.cds.fna.gz.gzi -4b5483fd8645da70bbdf662bd942226b ./CHANGES.Tanjil.gnm1.ann1.nnV9.txt -59c3dad481b7133c7126a8d49d70a6dd ./lupan.Tanjil.gnm1.ann1.nnV9.mrna.fna.gz -a1f0762e637dcec3071b47910eec86dc ./lupan.Tanjil.gnm1.ann1.nnV9.protein.faa.gz -aee2ab5ce5ab6694df58d1678cadb121 ./lupan.Tanjil.gnm1.ann1.nnV9.gene_models_pchr_plus_scaff.gff3.gz -b4ba1bf78aea040e787dca59c82a4173 ./lupan.Tanjil.gnm1.ann1.nnV9.protein.faa.gz.gzi -4ab2ed409f8ad824a5d29d8cf92df714 ./lupan.Tanjil.gnm1.ann1.nnV9.scaffolds_in_pchr.gff3.gz -fa41ecc5e6dd05e96ea6ab7f96defb75 ./lupan.Tanjil.gnm1.ann1.nnV9.cds.bed.gz -dc694fbef5d75050a9e7ac58966ca1fe ./lupan.Tanjil.gnm1.ann1.nnV9.pathway.tsv.gz -704b08dbd0773bb866b16790cd5e833e ./lupan.Tanjil.gnm1.ann1.nnV9.cds.bed.gz.tbi -b2345a2c4470c14b36708f001d8c6490 ./lupan.Tanjil.gnm1.ann1.nnV9.mrna.fna.gz.fai -e204f8d45fa91ac426444a0c641cca97 ./MANIFEST.Tanjil.gnm1.ann1.nnV9.descriptions.yml -40c64633487f0ea6ae5d8589a40fb0ae ./lupan.Tanjil.gnm1.ann1.nnV9.gene_models_tRNA.gff3.gz -459be85886ca80890d0544145701d09d ./BUSCO/lupan.Tanjil.gnm1.ann1.nnV9.busco.fabales_odb10.short_summary.json -41c1ad8b03d5b15acbb748763da6aee9 ./BUSCO/lupan.Tanjil.gnm1.ann1.nnV9.busco.fabales_odb10.full_table.tsv.gz -02c38a4c9059e59cc9fed778e2df8d40 ./BUSCO/lupan.Tanjil.gnm1.ann1.nnV9.busco.fabales_odb10.short_summary.txt +4b5483fd8645da70bbdf662bd942226b Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/CHANGES.Tanjil.gnm1.ann1.nnV9.txt +e7afe368995cd564cfdf4be1e4fc7924 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.cds.fna.gz +eb031b1b6ffa361dcdba64df8217fa18 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.cds.fna.gz.fai +8eaa040db1fe5b959eb4a6203adf0ed3 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.cds.fna.gz.gzi +a9a1916832681e42332705b33700287c Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.gene_models_main.bed.gz +4368bf21611d7068ddb07fcbf57390de Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.gene_models_main.bed.gz.tbi +f359fa14763ade2352c236dadc6ea49b Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.gene_models_main.gff3.gz +64f3d583adde9b32a9cd9424c045a133 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.gene_models_main.gff3.gz.tbi +aac34b05e9110bf0c329092c34498409 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.gene_models_miRNA.gff3.gz +aee2ab5ce5ab6694df58d1678cadb121 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.gene_models_pchr_plus_scaff.gff3.gz +672e1a00ed0dc35ec73c94816d675e70 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.gene_models_snRNA.gff3.gz +40c64633487f0ea6ae5d8589a40fb0ae Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.gene_models_tRNA.gff3.gz +dbb359aa4e76361d092eae4c745d76e6 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.gene_models.gff3.gz +1d583273c0b7c5b7cbee8d8cc6a1b180 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.legfed_v1_0.M65K.gfa.tsv.gz +59c3dad481b7133c7126a8d49d70a6dd Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.mrna.fna.gz +b2345a2c4470c14b36708f001d8c6490 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.mrna.fna.gz.fai +bbc881277fac163b964b24d227a8632d Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.mrna.fna.gz.gzi +a1f0762e637dcec3071b47910eec86dc Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.protein.faa.gz +c4781e409907b7413c511499da271e64 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.protein.faa.gz.fai +b4ba1bf78aea040e787dca59c82a4173 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.protein.faa.gz.gzi +6094ffaded2e597d378fc4286f724dd4 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.rgene_models_RNA.gff3.gz +4ab2ed409f8ad824a5d29d8cf92df714 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/lupan.Tanjil.gnm1.ann1.nnV9.scaffolds_in_pchr.gff3.gz +5fafa7dc5063a8ae80dcf0b897b0c7e5 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/MANIFEST.Tanjil.gnm1.ann1.nnV9.correspondence.yml +e204f8d45fa91ac426444a0c641cca97 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/MANIFEST.Tanjil.gnm1.ann1.nnV9.descriptions.yml +d0aa61cc3a4299138d7bed81de0a3be4 Lupinus/angustifolius/annotations/Tanjil.gnm1.ann1.nnV9/README.Tanjil.gnm1.ann1.nnV9.yml diff --git a/Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/CHECKSUM.XinJiangDaYe.gnm1.ann1.RKB9.md5 b/Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/CHECKSUM.XinJiangDaYe.gnm1.ann1.RKB9.md5 index eaec84a3..03b63ab8 100644 --- a/Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/CHECKSUM.XinJiangDaYe.gnm1.ann1.RKB9.md5 +++ b/Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/CHECKSUM.XinJiangDaYe.gnm1.ann1.RKB9.md5 @@ -1,22 +1,21 @@ -f0d11a3bd1431e9f1da2a34cc266463c ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.mrna.fna.gz.fai -7aa585668de3bb04501efdb0d28f869f ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.cds.fna.gz.fai -17d448b3e9fa0f3ada3a6956d42f32b8 ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.phytozome_10_2.HFNR.gfa.tsv.gz -542ace736b202721549fa27893e699fc ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.cds.fna.gz -92f733f0e5e95f39a161d5d372c38f78 ./CHANGES.XinJiangDaYe.gnm1.ann1.RKB9.txt -f2eccf464de1b5d54afeee168f089cb2 ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.protein.faa.gz.fai -1a924db62be2826564b83d5ce0f8849a ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.legfed_v1_0.M65K.gfa.tsv.gz -e38a2fffd17bcb28cb731edc4bd0b6fa ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.iprscan.gff3.gz -288a07cf99e3a5ea4e1ef6df8c1e4e18 ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.repeats.gff3.gz -f21363587c0e7c3fd3d2b03fe823236c ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.gene_models_main.gff3.gz -38ef0f4c6ce3879c1419797866a0373a ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.repeats.gff3.gz.tbi -41db8bcc9db6cc0b3812b46691a9d99f ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.cds.bed.gz.tbi -70681d9f99979012b0d327268b16e7d0 ./README.XinJiangDaYe.gnm1.ann1.RKB9.yml -d9b821c4ec286da3a089de4ba2a045db ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.mrna.fna.gz -eb16776a33a07e890a5e3fc07debc4b6 ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.protein.faa.gz.gzi -d3c360225a914b3d40563643db8ff664 ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.iprscan.gff3.gz.tbi -f218073bbb68cc90ae598b463357152a ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.gene_models_main.gff3.gz.tbi -0e23c2183356837ae0817d3e64942089 ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.cds.bed.gz -dd4b1d696166e02c36238cf808135a70 ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.cds.fna.gz.gzi -cc2a7cd8c140c1c59c4ce285e96f395e ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.legfed_v1_0.M65K.pathway.tsv.gz -0489f3239d0a863a5ef3f8728f331054 ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.mrna.fna.gz.gzi -bed99a47c02f37ec54054f5204f6fc7c ./medsa.XinJiangDaYe.gnm1.ann1.RKB9.protein.faa.gz +92f733f0e5e95f39a161d5d372c38f78 Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/CHANGES.XinJiangDaYe.gnm1.ann1.RKB9.txt +542ace736b202721549fa27893e699fc Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.cds.fna.gz +7aa585668de3bb04501efdb0d28f869f Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.cds.fna.gz.fai +dd4b1d696166e02c36238cf808135a70 Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.cds.fna.gz.gzi +37eac73df91aabd0be71b12893d451a2 Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.gene_models_main.bed.gz +2bf49602064d0506b4e5286401dcd5f0 Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.gene_models_main.bed.gz.tbi +f21363587c0e7c3fd3d2b03fe823236c Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.gene_models_main.gff3.gz +f218073bbb68cc90ae598b463357152a Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.gene_models_main.gff3.gz.tbi +e38a2fffd17bcb28cb731edc4bd0b6fa Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.iprscan.gff3.gz +d3c360225a914b3d40563643db8ff664 Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.iprscan.gff3.gz.tbi +1a924db62be2826564b83d5ce0f8849a Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.legfed_v1_0.M65K.gfa.tsv.gz +d9b821c4ec286da3a089de4ba2a045db Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.mrna.fna.gz +f0d11a3bd1431e9f1da2a34cc266463c Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.mrna.fna.gz.fai +0489f3239d0a863a5ef3f8728f331054 Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.mrna.fna.gz.gzi +17d448b3e9fa0f3ada3a6956d42f32b8 Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.phytozome_10_2.HFNR.gfa.tsv.gz +bed99a47c02f37ec54054f5204f6fc7c Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.protein.faa.gz +f2eccf464de1b5d54afeee168f089cb2 Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.protein.faa.gz.fai +eb16776a33a07e890a5e3fc07debc4b6 Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.protein.faa.gz.gzi +288a07cf99e3a5ea4e1ef6df8c1e4e18 Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.repeats.gff3.gz +38ef0f4c6ce3879c1419797866a0373a Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/medsa.XinJiangDaYe.gnm1.ann1.RKB9.repeats.gff3.gz.tbi +70681d9f99979012b0d327268b16e7d0 Medicago/sativa/annotations/XinJiangDaYe.gnm1.ann1.RKB9/README.XinJiangDaYe.gnm1.ann1.RKB9.yml diff --git a/Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/CHECKSUM.A17.gnm5.ann1_6.L2RX.md5 b/Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/CHECKSUM.A17.gnm5.ann1_6.L2RX.md5 index e5f9d22b..abe9830f 100644 --- a/Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/CHECKSUM.A17.gnm5.ann1_6.L2RX.md5 +++ b/Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/CHECKSUM.A17.gnm5.ann1_6.L2RX.md5 @@ -1,25 +1,23 @@ -1c0c8951542ae4eac1f80ad374dc31cd ./MANIFEST.A17.gnm5.ann1_6.L2RX.descriptions.yml -86eedf2868cfb213f4bafb30347b66a2 ./medtr.A17.gnm5.ann1_6.L2RX.cds.bed.gz -2b576cb964e306ee409c8244bd660520 ./busco/medtr.A17.gnm5.ann1_6.L2RX.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.A17.gnm5.ann1_6.L2RX.protein.faa.gz_busco.txt -b62f39c7251ad63727e366e51e54dec3 ./medtr.A17.gnm5.ann1_6.L2RX.mrna.fna.gz.fai -c2f12edcd057fce0d3746bd73fad158b ./medtr.A17.gnm5.ann1_6.L2RX.repeats.gff3.gz -cf8e4c659e5fd4e1d1c4228906013294 ./medtr.A17.gnm5.ann1_6.L2RX.cds.fna.gz.fai -ae1df8d5934cd69a41d73d089112d420 ./medtr.A17.gnm5.ann1_6.L2RX.iprscan.gff3.gz -1ec70a9f1cadd641b87984aefe852ac5 ./medtr.A17.gnm5.ann1_6.L2RX.protein.faa.gz.fai -1065ab72940f9b225d33615b693ddb1a ./README.A17.gnm5.ann1_6.L2RX.yml -491e5a53aacbeef78ef1a1abe9a6d3c0 ./medtr.A17.gnm5.ann1_6.L2RX.protein.faa.gz.gzi -481dd9d86ddca977e96e6c317d352374 ./medtr.A17.gnm5.ann1_6.L2RX.iprscan.gff3.gz.tbi -39e506f53607073cc0607f51273d3270 ./MANIFEST.A17.gnm5.ann1_6.L2RX.correspondence.yml -aa2d8ccf52e3ff3b73a1edb567cb94b3 ./medtr.A17.gnm5.ann1_6.L2RX.legfed_v1_0.M65K.pathway.tsv.gz -bb9e167d8c388913e7ec044f9ad6d914 ./medtr.A17.gnm5.ann1_6.L2RX.phytozome_10_2.HFNR.gfa.tsv.gz -6f50d770a0a584eb92b01843b6631ac5 ./medtr.A17.gnm5.ann1_6.L2RX.cds.fna.gz.gzi -0c4465bbed01e159c4e6031ab0dde8c6 ./medtr.A17.gnm5.ann1_6.L2RX.protein.faa.gz -11ce296a559a2ceb00f004ca2882b3c1 ./medtr.A17.gnm5.ann1_6.L2RX.legfed_v1_0.M65K.gfa.tsv.gz -198cc37c699b3ccf757df0aab8b27402 ./medtr.A17.gnm5.ann1_6.L2RX.repeats.gff3.gz.tbi -68c26b2997149796d87be7128661e8cc ./medtr.A17.gnm5.ann1_6.L2RX.cds.fna.gz -c40e752c2b697e7c3f5c85a4ae051ac1 ./medtr.A17.gnm5.ann1_6.L2RX.mrna.fna.gz.gzi -498c7bc22878fba0d0228faf54e38493 ./medtr.A17.gnm5.ann1_6.L2RX.gene_models_main.gff3.gz.tbi -65f695344a0d9b9d2663332501c49b03 ./CHANGES.A17.gnm5.ann1_6.L2RX.txt -f3664c9df68c3c740a0305477253f2d2 ./medtr.A17.gnm5.ann1_6.L2RX.mrna.fna.gz -a957419a9e9cf078c5d821aca04939d3 ./medtr.A17.gnm5.ann1_6.L2RX.gene_models_main.gff3.gz -b72c2a7420318d8d7dcf8350de1914b7 ./medtr.A17.gnm5.ann1_6.L2RX.cds.bed.gz.csi +65f695344a0d9b9d2663332501c49b03 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/CHANGES.A17.gnm5.ann1_6.L2RX.txt +39e506f53607073cc0607f51273d3270 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/MANIFEST.A17.gnm5.ann1_6.L2RX.correspondence.yml +1c0c8951542ae4eac1f80ad374dc31cd Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/MANIFEST.A17.gnm5.ann1_6.L2RX.descriptions.yml +68c26b2997149796d87be7128661e8cc Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.cds.fna.gz +cf8e4c659e5fd4e1d1c4228906013294 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.cds.fna.gz.fai +6f50d770a0a584eb92b01843b6631ac5 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.cds.fna.gz.gzi +0465031983e2e07ed3cbaf944b57cbe2 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.gene_models_main.bed.gz +328c665a1488e2dcec87820e6bb39d6f Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.gene_models_main.bed.gz.tbi +a957419a9e9cf078c5d821aca04939d3 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.gene_models_main.gff3.gz +498c7bc22878fba0d0228faf54e38493 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.gene_models_main.gff3.gz.tbi +ae1df8d5934cd69a41d73d089112d420 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.iprscan.gff3.gz +481dd9d86ddca977e96e6c317d352374 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.iprscan.gff3.gz.tbi +11ce296a559a2ceb00f004ca2882b3c1 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.legfed_v1_0.M65K.gfa.tsv.gz +f3664c9df68c3c740a0305477253f2d2 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.mrna.fna.gz +b62f39c7251ad63727e366e51e54dec3 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.mrna.fna.gz.fai +c40e752c2b697e7c3f5c85a4ae051ac1 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.mrna.fna.gz.gzi +bb9e167d8c388913e7ec044f9ad6d914 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.phytozome_10_2.HFNR.gfa.tsv.gz +0c4465bbed01e159c4e6031ab0dde8c6 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.protein.faa.gz +1ec70a9f1cadd641b87984aefe852ac5 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.protein.faa.gz.fai +491e5a53aacbeef78ef1a1abe9a6d3c0 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.protein.faa.gz.gzi +c2f12edcd057fce0d3746bd73fad158b Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.repeats.gff3.gz +198cc37c699b3ccf757df0aab8b27402 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/medtr.A17.gnm5.ann1_6.L2RX.repeats.gff3.gz.tbi +3c9d27f50259d577ac07627c9641c226 Medicago/truncatula/annotations/A17.gnm5.ann1_6.L2RX/README.A17.gnm5.ann1_6.L2RX.yml diff --git a/Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/CHECKSUM.A17_HM341.gnm4.ann2.G3ZY.md5 b/Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/CHECKSUM.A17_HM341.gnm4.ann2.G3ZY.md5 index 676179af..418a7d28 100644 --- a/Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/CHECKSUM.A17_HM341.gnm4.ann2.G3ZY.md5 +++ b/Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/CHECKSUM.A17_HM341.gnm4.ann2.G3ZY.md5 @@ -1,31 +1,28 @@ -01d51265a8a03c9194a82df7e06c604a ./medtr.A17_HM341.gnm4.ann2.G3ZY.protein_primary.faa.gz -fec7852506116dbc416a6422244969ba ./medtr.A17_HM341.gnm4.ann2.G3ZY.trna.fna.gz -7241c4e13347434d6a7c645ff2a516af ./medtr.A17_HM341.gnm4.ann2.G3ZY.phytozome_10_2.HFNR.gfa.tsv.gz -2a64ed84de329dd7d623c763a7e7eb8b ./medtr.A17_HM341.gnm4.ann2.G3ZY.cds_primary.fna.gz.gzi -10bc0b7c81bd79f9c8fadc2c2ce6d95a ./medtr.A17_HM341.gnm4.ann2.G3ZY.cds_primary.fna.gz -72592a9bba498497430473534f80098c ./medtr.A17_HM341.gnm4.ann2.G3ZY.mrna.fna.gz.gzi -74f5d933807e573c998f8813622ad425 ./medtr.A17_HM341.gnm4.ann2.G3ZY.trna.fna.gz.gzi -e26e063e3a6a27b78b65a6440a5eec86 ./medtr.A17_HM341.gnm4.ann2.G3ZY.protein.faa.gz.fai -aa0e7a1aca66567d23ec854c0bf1e24c ./medtr.A17_HM341.gnm4.ann2.G3ZY.cds.fna.gz.fai -a1d6d3fe502e38e1d44b7d729a3ddc21 ./README.A17_HM341.gnm4.ann2.G3ZY.yml -4e4fccfec1be4ef46eac979decdbaafe ./medtr.A17_HM341.gnm4.ann2.G3ZY.cds.bed.gz -e3414922ded97191d7ee0169ffa01317 ./medtr.A17_HM341.gnm4.ann2.G3ZY.protein_primary.faa.gz.gzi -067dc92bda9cc764a7d1ff22d70f52be ./CHANGES.A17_HM341.gnm4.ann2.G3ZY.txt -07e0a86c6a3d17e0aee61d8e58c5ac01 ./medtr.A17_HM341.gnm4.ann2.G3ZY.protein_primary.faa.gz.fai -dbb690b9d115fbb7b9130cc27d13e09a ./medtr.A17_HM341.gnm4.ann2.G3ZY.protein.faa.gz -5fa4f0321bc661349ddeaa35a71c8b2b ./medtr.A17_HM341.gnm4.ann2.G3ZY.legfed_v1_0.M65K.gfa.tsv.gz -5270b6602a99f8a8b4d00c107514f711 ./medtr.A17_HM341.gnm4.ann2.G3ZY.gene_models_main.gff3.gz -22dd551111e9b1c51b25aa1bd77f49c9 ./medtr.A17_HM341.gnm4.ann2.G3ZY.protein.faa.gz.gzi -93e3cace57ec45999d3b04911251a0ad ./medtr.A17_HM341.gnm4.ann2.G3ZY.cds.fna.gz.gzi -145887bddcbc7de4b5d056c9c3e555c8 ./medtr.A17_HM341.gnm4.ann2.G3ZY.cds.fna.gz -2331ea0683f472d9429e1b334515c2d3 ./medtr.A17_HM341.gnm4.ann2.G3ZY.trna.fna.gz.fai -53f14852a98b0955738f035a261fc049 ./busco/medtr.A17_HM341.gnm4.ann2.G3ZY.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.A17_HM341.gnm4.ann2.G3ZY.protein_primaryTranscript.faa.gz_busco.txt -5d34d4d5d8544228a448808617bf35d6 ./busco/medtr.A17_HM341.gnm4.ann2.G3ZY.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.A17_HM341.gnm4.ann2.G3ZY.protein.faa.gz_busco.txt -622fa5fbe664796db5aa6e3d5850e0af ./MANIFEST.A17_HM341.gnm4.ann2.G3ZY.descriptions.yml -5fd5b195df30e939c6a84e2eeb0ea5af ./medtr.A17_HM341.gnm4.ann2.G3ZY.gene_models_main.gff3.gz.tbi -5e5db3528c79d1cf607736dcb0994aeb ./medtr.A17_HM341.gnm4.ann2.G3ZY.mrna.fna.gz.fai -415f3d7f0119eeea924600e030dd9a0c ./medtr.A17_HM341.gnm4.ann2.G3ZY.mrna.fna.gz -9d12ff8b52e2b7e5e92e0f0b30d223c6 ./MANIFEST.A17_HM341.gnm4.ann2.G3ZY.correspondence.yml -fed80b315b85a6f9fd34d11c74981a9a ./medtr.A17_HM341.gnm4.ann2.G3ZY.cds.bed.gz.tbi -a6e846b4634e6d79243e444d2f939484 ./medtr.A17_HM341.gnm4.ann2.G3ZY.pathway.tsv.gz -71d1662ee2504b46e24df2e0119e7d7f ./medtr.A17_HM341.gnm4.ann2.G3ZY.cds_primary.fna.gz.fai +067dc92bda9cc764a7d1ff22d70f52be Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/CHANGES.A17_HM341.gnm4.ann2.G3ZY.txt +9d12ff8b52e2b7e5e92e0f0b30d223c6 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/MANIFEST.A17_HM341.gnm4.ann2.G3ZY.correspondence.yml +622fa5fbe664796db5aa6e3d5850e0af Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/MANIFEST.A17_HM341.gnm4.ann2.G3ZY.descriptions.yml +10bc0b7c81bd79f9c8fadc2c2ce6d95a Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.cds_primary.fna.gz +71d1662ee2504b46e24df2e0119e7d7f Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.cds_primary.fna.gz.fai +2a64ed84de329dd7d623c763a7e7eb8b Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.cds_primary.fna.gz.gzi +145887bddcbc7de4b5d056c9c3e555c8 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.cds.fna.gz +aa0e7a1aca66567d23ec854c0bf1e24c Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.cds.fna.gz.fai +93e3cace57ec45999d3b04911251a0ad Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.cds.fna.gz.gzi +dc13e91942195f25c4080dac46588a81 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.gene_models_main.bed.gz +c23cd253c75526cf41bf45c6d92a1704 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.gene_models_main.bed.gz.tbi +5270b6602a99f8a8b4d00c107514f711 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.gene_models_main.gff3.gz +5fd5b195df30e939c6a84e2eeb0ea5af Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.gene_models_main.gff3.gz.tbi +5fa4f0321bc661349ddeaa35a71c8b2b Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.legfed_v1_0.M65K.gfa.tsv.gz +415f3d7f0119eeea924600e030dd9a0c Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.mrna.fna.gz +5e5db3528c79d1cf607736dcb0994aeb Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.mrna.fna.gz.fai +72592a9bba498497430473534f80098c Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.mrna.fna.gz.gzi +7241c4e13347434d6a7c645ff2a516af Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.phytozome_10_2.HFNR.gfa.tsv.gz +01d51265a8a03c9194a82df7e06c604a Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.protein_primary.faa.gz +07e0a86c6a3d17e0aee61d8e58c5ac01 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.protein_primary.faa.gz.fai +e3414922ded97191d7ee0169ffa01317 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.protein_primary.faa.gz.gzi +dbb690b9d115fbb7b9130cc27d13e09a Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.protein.faa.gz +e26e063e3a6a27b78b65a6440a5eec86 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.protein.faa.gz.fai +22dd551111e9b1c51b25aa1bd77f49c9 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.protein.faa.gz.gzi +fec7852506116dbc416a6422244969ba Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.trna.fna.gz +2331ea0683f472d9429e1b334515c2d3 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.trna.fna.gz.fai +74f5d933807e573c998f8813622ad425 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/medtr.A17_HM341.gnm4.ann2.G3ZY.trna.fna.gz.gzi +a1d6d3fe502e38e1d44b7d729a3ddc21 Medicago/truncatula/annotations/A17_HM341.gnm4.ann2.G3ZY/README.A17_HM341.gnm4.ann2.G3ZY.yml diff --git a/Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/CHECKSUM.HM004.gnm1.ann1.2XTB.md5 b/Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/CHECKSUM.HM004.gnm1.ann1.2XTB.md5 index 25c9be39..97f05b99 100644 --- a/Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/CHECKSUM.HM004.gnm1.ann1.2XTB.md5 +++ b/Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/CHECKSUM.HM004.gnm1.ann1.2XTB.md5 @@ -1,26 +1,21 @@ -c784524eff92add6831f365a8fc80577 ./README.HM004.gnm1.ann1.2XTB.yml -3ede74a35d36655b56648645f04405b3 ./BUSCO/medtr.HM004.gnm1.ann1.2XTB.busco.fabales_odb10.short_summary.txt -f0b8d1ee7cd10fdaddd8901da6e167d2 ./BUSCO/medtr.HM004.gnm1.ann1.2XTB.busco.fabales_odb10.short_summary.json -c77b7e5700259d96a90c2121320db10c ./BUSCO/medtr.HM004.gnm1.ann1.2XTB.busco.fabales_odb10.full_table.tsv.gz -026512271085d896dcefd5ec29584da1 ./medtr.HM004.gnm1.ann1.2XTB.cds.fna.gz.fai -bd5dc094fa1be66f9fb075b82f480f11 ./medtr.HM004.gnm1.ann1.2XTB.iprscan.gff3.gz -fc188660e7d30680a8cc8f555efe2e38 ./medtr.HM004.gnm1.ann1.2XTB.cds.bed.gz -b0adefa9ef77971590c273b2c5c262a9 ./medtr.HM004.gnm1.ann1.2XTB.protein.faa.gz.fai -8ea9ed9a38de5d8a8c87d9939d401abf ./medtr.HM004.gnm1.ann1.2XTB.gene_models_main.gff3.gz.tbi -6040f3293f315ded5c3b730f4439bc8a ./medtr.HM004.gnm1.ann1.2XTB.mrna.fna.gz.fai -d2e41e641e72cbfe6deb7a50726c262b ./medtr.HM004.gnm1.ann1.2XTB.cds.bed.gz.tbi -8514471baf3d321e9461a6e0c1cdff2b ./medtr.HM004.gnm1.ann1.2XTB.mrna.fna.gz.gzi -6df0b5892a6af3621ef6fef5db7ed8b6 ./medtr.HM004.gnm1.ann1.2XTB.mrna.fna.gz -845ac948ba319c9febb043a1d2b706d0 ./MANIFEST.HM004.gnm1.ann1.2XTB.correspondence.yml -659a48bfcc28a46e0c87d857b06d6071 ./MANIFEST.HM004.gnm1.ann1.2XTB.descriptions.yml -c7eaf0ead92e269e445f0631f5ecd2bf ./medtr.HM004.gnm1.ann1.2XTB.gene_models_main.gff3.gz -acee445cbda44f5012adeb8e23757968 ./medtr.HM004.gnm1.ann1.2XTB.phytozome_10_2.HFNR.gfa.tsv.gz -d7124c0cbd022486c76d7efb99409131 ./medtr.HM004.gnm1.ann1.2XTB.protein.faa.gz.gzi -14d653a8cc9e012cbad92903484028a9 ./medtr.HM004.gnm1.ann1.2XTB.protein.faa.gz -e39c0bf38f2030b5b370d6ff376eefcd ./medtr.HM004.gnm1.ann1.2XTB.legfed_v1_0.M65K.pathway.tsv.gz -1bc02437ed9508efeea09bc02f93c5e4 ./medtr.HM004.gnm1.ann1.2XTB.iprscan.gff3.gz.tbi -b6c7ce7db93678705c0911ca312606b8 ./busco/medtr.HM004.gnm1.ann1.2XTB.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.HM004.gnm1.ann1.2XTB.protein.faa.gz_busco.txt -3285a51a9c4ba2596b0b5ece2957878e ./medtr.HM004.gnm1.ann1.2XTB.cds.fna.gz.gzi -b73358e872a83af9db365a79a5fc24df ./medtr.HM004.gnm1.ann1.2XTB.cds.fna.gz -1e54f2cfd59f10fbae6f2fd308c78c4e ./CHANGES.HM004.gnm1.ann1.2XTB.txt -cb69439b35aacbed08853f4a3015b289 ./medtr.HM004.gnm1.ann1.2XTB.legfed_v1_0.M65K.gfa.tsv.gz +1e54f2cfd59f10fbae6f2fd308c78c4e Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/CHANGES.HM004.gnm1.ann1.2XTB.txt +845ac948ba319c9febb043a1d2b706d0 Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/MANIFEST.HM004.gnm1.ann1.2XTB.correspondence.yml +659a48bfcc28a46e0c87d857b06d6071 Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/MANIFEST.HM004.gnm1.ann1.2XTB.descriptions.yml +b73358e872a83af9db365a79a5fc24df Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.cds.fna.gz +026512271085d896dcefd5ec29584da1 Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.cds.fna.gz.fai +3285a51a9c4ba2596b0b5ece2957878e Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.cds.fna.gz.gzi +0921893ef54ce9d382097bbe844b61e5 Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.gene_models_main.bed.gz +bb221c56af8d578d480d0f9d3b4f8380 Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.gene_models_main.bed.gz.tbi +c7eaf0ead92e269e445f0631f5ecd2bf Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.gene_models_main.gff3.gz +8ea9ed9a38de5d8a8c87d9939d401abf Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.gene_models_main.gff3.gz.tbi +bd5dc094fa1be66f9fb075b82f480f11 Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.iprscan.gff3.gz +1bc02437ed9508efeea09bc02f93c5e4 Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.iprscan.gff3.gz.tbi +cb69439b35aacbed08853f4a3015b289 Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.legfed_v1_0.M65K.gfa.tsv.gz +6df0b5892a6af3621ef6fef5db7ed8b6 Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.mrna.fna.gz +6040f3293f315ded5c3b730f4439bc8a Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.mrna.fna.gz.fai +8514471baf3d321e9461a6e0c1cdff2b Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.mrna.fna.gz.gzi +acee445cbda44f5012adeb8e23757968 Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.phytozome_10_2.HFNR.gfa.tsv.gz +14d653a8cc9e012cbad92903484028a9 Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.protein.faa.gz +b0adefa9ef77971590c273b2c5c262a9 Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.protein.faa.gz.fai +d7124c0cbd022486c76d7efb99409131 Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/medtr.HM004.gnm1.ann1.2XTB.protein.faa.gz.gzi +c784524eff92add6831f365a8fc80577 Medicago/truncatula/annotations/HM004.gnm1.ann1.2XTB/README.HM004.gnm1.ann1.2XTB.yml diff --git a/Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/CHECKSUM.HM010.gnm1.ann1.WV9J.md5 b/Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/CHECKSUM.HM010.gnm1.ann1.WV9J.md5 index d490f287..dde1c09e 100644 --- a/Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/CHECKSUM.HM010.gnm1.ann1.WV9J.md5 +++ b/Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/CHECKSUM.HM010.gnm1.ann1.WV9J.md5 @@ -1,25 +1,21 @@ -3a0dee53218fb564d388190d0d6fc563 ./medtr.HM010.gnm1.ann1.WV9J.mrna.fna.gz.fai -645d1164b3100f98fdde557d6c333f27 ./medtr.HM010.gnm1.ann1.WV9J.cds.fna.gz -ddeb60a698e850ff3d3f818939879ff2 ./medtr.HM010.gnm1.ann1.WV9J.gene_models_main.gff3.gz.tbi -a15de991557f91c71c4e92eb71ba9247 ./medtr.HM010.gnm1.ann1.WV9J.legfed_v1_0.M65K.gfa.tsv.gz -363d174995582009e5e5c709732b2390 ./busco/medtr.HM010.gnm1.ann1.WV9J.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.HM010.gnm1.ann1.WV9J.protein.faa.gz_busco.txt -c2b9d48e660c890a56819e085ff5f653 ./medtr.HM010.gnm1.ann1.WV9J.iprscan.gff3.gz -a9442b1d806f0145be9163d58aa67bc4 ./MANIFEST.HM010.gnm1.ann1.WV9J.descriptions.yml -1e54f2cfd59f10fbae6f2fd308c78c4e ./CHANGES.HM010.gnm1.ann1.WV9J.txt -051810871640a70ea252fd4950b3aeab ./medtr.HM010.gnm1.ann1.WV9J.protein.faa.gz.fai -1276194d8c8be7ff1565ea6f13912479 ./medtr.HM010.gnm1.ann1.WV9J.phytozome_10_2.HFNR.gfa.tsv.gz -34a961629123797a8b3f96183ce51a23 ./medtr.HM010.gnm1.ann1.WV9J.cds.fna.gz.fai -ad6450e9698b11eb81b66ca6e7799a27 ./medtr.HM010.gnm1.ann1.WV9J.protein.faa.gz.gzi -60f2eb20447e88744868268b15321c22 ./medtr.HM010.gnm1.ann1.WV9J.gene_models_main.gff3.gz -3171a5f1f3759a879c7bbd67a50b2001 ./medtr.HM010.gnm1.ann1.WV9J.cds.fna.gz.gzi -2d4620865cd75db9c5679519091031d4 ./README.HM010.gnm1.ann1.WV9J.yml -515a03d40f0002c0e91a9dd7a92e1ad7 ./BUSCO/medtr.HM010.gnm1.ann1.WV9J.busco.fabales_odb10.short_summary.json -35f460bf5f414cbf9f05965e3fdecc2a ./BUSCO/medtr.HM010.gnm1.ann1.WV9J.busco.fabales_odb10.full_table.tsv.gz -27c1297245a0af0b4f0f459b7d6b3870 ./BUSCO/medtr.HM010.gnm1.ann1.WV9J.busco.fabales_odb10.short_summary.txt -89e3342dd9f9c186b9577b8e21086ae7 ./medtr.HM010.gnm1.ann1.WV9J.protein.faa.gz -297d8f58fea4fbf76ae52eb681835e82 ./MANIFEST.HM010.gnm1.ann1.WV9J.correspondence.yml -e7bd653ac8020501e1f8381ad3f7fd2d ./medtr.HM010.gnm1.ann1.WV9J.cds.bed.gz.tbi -855b41350f1b58b3830fa73b3cc3872f ./medtr.HM010.gnm1.ann1.WV9J.iprscan.gff3.gz.tbi -00434401fc9dc1b15616da5aa18ee8f1 ./medtr.HM010.gnm1.ann1.WV9J.mrna.fna.gz -71127b511507caa21f9e2192a75b397e ./medtr.HM010.gnm1.ann1.WV9J.cds.bed.gz -f7b8a4159c8e43771640084ed7cc89ff ./medtr.HM010.gnm1.ann1.WV9J.mrna.fna.gz.gzi +1e54f2cfd59f10fbae6f2fd308c78c4e Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/CHANGES.HM010.gnm1.ann1.WV9J.txt +297d8f58fea4fbf76ae52eb681835e82 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/MANIFEST.HM010.gnm1.ann1.WV9J.correspondence.yml +a9442b1d806f0145be9163d58aa67bc4 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/MANIFEST.HM010.gnm1.ann1.WV9J.descriptions.yml +645d1164b3100f98fdde557d6c333f27 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.cds.fna.gz +34a961629123797a8b3f96183ce51a23 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.cds.fna.gz.fai +3171a5f1f3759a879c7bbd67a50b2001 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.cds.fna.gz.gzi +dec0109d7260d4399cf9374259ba42e2 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.gene_models_main.bed.gz +813f73db747fb3cb588bc2331362e4d7 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.gene_models_main.bed.gz.tbi +60f2eb20447e88744868268b15321c22 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.gene_models_main.gff3.gz +ddeb60a698e850ff3d3f818939879ff2 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.gene_models_main.gff3.gz.tbi +c2b9d48e660c890a56819e085ff5f653 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.iprscan.gff3.gz +855b41350f1b58b3830fa73b3cc3872f Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.iprscan.gff3.gz.tbi +a15de991557f91c71c4e92eb71ba9247 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.legfed_v1_0.M65K.gfa.tsv.gz +00434401fc9dc1b15616da5aa18ee8f1 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.mrna.fna.gz +3a0dee53218fb564d388190d0d6fc563 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.mrna.fna.gz.fai +f7b8a4159c8e43771640084ed7cc89ff Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.mrna.fna.gz.gzi +1276194d8c8be7ff1565ea6f13912479 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.phytozome_10_2.HFNR.gfa.tsv.gz +89e3342dd9f9c186b9577b8e21086ae7 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.protein.faa.gz +051810871640a70ea252fd4950b3aeab Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.protein.faa.gz.fai +ad6450e9698b11eb81b66ca6e7799a27 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/medtr.HM010.gnm1.ann1.WV9J.protein.faa.gz.gzi +2d4620865cd75db9c5679519091031d4 Medicago/truncatula/annotations/HM010.gnm1.ann1.WV9J/README.HM010.gnm1.ann1.WV9J.yml diff --git a/Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/CHECKSUM.HM022.gnm1.ann1.6C8N.md5 b/Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/CHECKSUM.HM022.gnm1.ann1.6C8N.md5 index c10b1bf6..40ebfc0c 100644 --- a/Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/CHECKSUM.HM022.gnm1.ann1.6C8N.md5 +++ b/Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/CHECKSUM.HM022.gnm1.ann1.6C8N.md5 @@ -1,25 +1,21 @@ -b50d505384902b46c67d8528e55f7230 ./medtr.HM022.gnm1.ann1.6C8N.cds.fna.gz.gzi -5d76796d827acc5dd552de47780e50f0 ./medtr.HM022.gnm1.ann1.6C8N.legfed_v1_0.M65K.gfa.tsv.gz -32af49de95aa1ce0ce65b15c52d1347d ./medtr.HM022.gnm1.ann1.6C8N.iprscan.gff3.gz -7f69cd6d7d92d1398500eb889807ff90 ./medtr.HM022.gnm1.ann1.6C8N.protein.faa.gz -c82f8cedbe0718349daaf79092f71941 ./README.HM022.gnm1.ann1.6C8N.yml -8190ec00e1bf65ec5490e40957d52c7f ./medtr.HM022.gnm1.ann1.6C8N.cds.fna.gz -4122fd1a5249d204c5c45cad28a58b14 ./BUSCO/medtr.HM022.gnm1.ann1.6C8N.busco.fabales_odb10.short_summary.txt -8a40518727db6381aea85c14752b6dc6 ./BUSCO/medtr.HM022.gnm1.ann1.6C8N.busco.fabales_odb10.full_table.tsv.gz -8170c212cb980d23b226aceb70182001 ./BUSCO/medtr.HM022.gnm1.ann1.6C8N.busco.fabales_odb10.short_summary.json -a6bd0da401b13e18ca26a1000af012cb ./medtr.HM022.gnm1.ann1.6C8N.protein.faa.gz.fai -b757d815e563aa247cb27d537213a5fc ./medtr.HM022.gnm1.ann1.6C8N.cds.bed.gz.tbi -1e54f2cfd59f10fbae6f2fd308c78c4e ./CHANGES.HM022.gnm1.ann1.6C8N.txt -3a89e36d3a85aa8eb2a245472ab8a407 ./medtr.HM022.gnm1.ann1.6C8N.mrna.fna.gz.fai -204832b86073d1d7bda8a348e5643546 ./medtr.HM022.gnm1.ann1.6C8N.mrna.fna.gz.gzi -3f7e7f0fa30c08f5bf992d1c67c12f66 ./medtr.HM022.gnm1.ann1.6C8N.cds.bed.gz -b0e10147b838a2ab87c192a838eedf85 ./busco/medtr.HM022.gnm1.ann1.6C8N.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.HM022.gnm1.ann1.6C8N.protein.faa.gz_busco.txt -c9e2c69b5e100c93d4131d6ee53b7a82 ./medtr.HM022.gnm1.ann1.6C8N.protein.faa.gz.gzi -b907a93d9558cae14333f6d93bcf213a ./medtr.HM022.gnm1.ann1.6C8N.iprscan.gff3.gz.tbi -4df7a6858c60b93889ab5d02ebc5083a ./medtr.HM022.gnm1.ann1.6C8N.gene_models_main.gff3.gz -59ce93fea637a2bb5280ebb9d866c3b8 ./medtr.HM022.gnm1.ann1.6C8N.gene_models_main.gff3.gz.tbi -b7785224f226f62f631acf5e9ed0cda2 ./medtr.HM022.gnm1.ann1.6C8N.cds.fna.gz.fai -2c2af6961677066cc9efb43f4b7c947b ./medtr.HM022.gnm1.ann1.6C8N.phytozome_10_2.HFNR.gfa.tsv.gz -4263e3c5bc7a18c1dbd4ae107e960389 ./medtr.HM022.gnm1.ann1.6C8N.mrna.fna.gz -06375792b4610724e4b87e69f73bd179 ./MANIFEST.HM022.gnm1.ann1.6C8N.descriptions.yml -62acd2a8b1f1cbd0d05e490fe7ab0484 ./MANIFEST.HM022.gnm1.ann1.6C8N.correspondence.yml +1e54f2cfd59f10fbae6f2fd308c78c4e Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/CHANGES.HM022.gnm1.ann1.6C8N.txt +62acd2a8b1f1cbd0d05e490fe7ab0484 Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/MANIFEST.HM022.gnm1.ann1.6C8N.correspondence.yml +06375792b4610724e4b87e69f73bd179 Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/MANIFEST.HM022.gnm1.ann1.6C8N.descriptions.yml +8190ec00e1bf65ec5490e40957d52c7f Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.cds.fna.gz +b7785224f226f62f631acf5e9ed0cda2 Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.cds.fna.gz.fai +b50d505384902b46c67d8528e55f7230 Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.cds.fna.gz.gzi +dfcf79117b6cf8ba69d6a83431f3d211 Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.gene_models_main.bed.gz +31d0a455959015d157ecffb533506d77 Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.gene_models_main.bed.gz.tbi +4df7a6858c60b93889ab5d02ebc5083a Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.gene_models_main.gff3.gz +59ce93fea637a2bb5280ebb9d866c3b8 Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.gene_models_main.gff3.gz.tbi +32af49de95aa1ce0ce65b15c52d1347d Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.iprscan.gff3.gz +b907a93d9558cae14333f6d93bcf213a Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.iprscan.gff3.gz.tbi +5d76796d827acc5dd552de47780e50f0 Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.legfed_v1_0.M65K.gfa.tsv.gz +4263e3c5bc7a18c1dbd4ae107e960389 Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.mrna.fna.gz +3a89e36d3a85aa8eb2a245472ab8a407 Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.mrna.fna.gz.fai +204832b86073d1d7bda8a348e5643546 Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.mrna.fna.gz.gzi +2c2af6961677066cc9efb43f4b7c947b Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.phytozome_10_2.HFNR.gfa.tsv.gz +7f69cd6d7d92d1398500eb889807ff90 Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.protein.faa.gz +a6bd0da401b13e18ca26a1000af012cb Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.protein.faa.gz.fai +c9e2c69b5e100c93d4131d6ee53b7a82 Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/medtr.HM022.gnm1.ann1.6C8N.protein.faa.gz.gzi +c82f8cedbe0718349daaf79092f71941 Medicago/truncatula/annotations/HM022.gnm1.ann1.6C8N/README.HM022.gnm1.ann1.6C8N.yml diff --git a/Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/CHECKSUM.HM023.gnm1.ann1.WZN8.md5 b/Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/CHECKSUM.HM023.gnm1.ann1.WZN8.md5 index a797f5de..656a447c 100644 --- a/Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/CHECKSUM.HM023.gnm1.ann1.WZN8.md5 +++ b/Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/CHECKSUM.HM023.gnm1.ann1.WZN8.md5 @@ -1,25 +1,21 @@ -04d40e6ead5c12e242ea1707246b5d86 ./BUSCO/medtr.HM023.gnm1.ann1.WZN8.busco.fabales_odb10.short_summary.txt -1f1bbcb888608fa21b16d52fc678dfd3 ./BUSCO/medtr.HM023.gnm1.ann1.WZN8.busco.fabales_odb10.short_summary.json -24d6a60d5367883db211b52fdc4fda72 ./BUSCO/medtr.HM023.gnm1.ann1.WZN8.busco.fabales_odb10.full_table.tsv.gz -9c1e17c0987cdf3d6cabbf20d95d4c01 ./MANIFEST.HM023.gnm1.ann1.WZN8.descriptions.yml -b94043fa6ce764afbf7daab034c65d83 ./medtr.HM023.gnm1.ann1.WZN8.mrna.fna.gz.fai -48beaaa437e397abd745b8155c5e6b79 ./medtr.HM023.gnm1.ann1.WZN8.protein.faa.gz.gzi -e80f4701f58ca7b950dd47968b30ec15 ./README.HM023.gnm1.ann1.WZN8.yml -f749ef883813b482f6ff26247f4e5f44 ./medtr.HM023.gnm1.ann1.WZN8.mrna.fna.gz -6e31d74e793996a4ac52af44976f15f9 ./medtr.HM023.gnm1.ann1.WZN8.cds.fna.gz.fai -b228965d292a67ce39eb9f3c921b3dd8 ./medtr.HM023.gnm1.ann1.WZN8.iprscan.gff3.gz -4f51675bd53a98bf7957e6a8336f4665 ./medtr.HM023.gnm1.ann1.WZN8.gene_models_main.gff3.gz.tbi -aa9752e21ab56b19c1303c7df8409f0e ./medtr.HM023.gnm1.ann1.WZN8.iprscan.gff3.gz.tbi -f2951c023b90551bd4f0ce247d1b40df ./medtr.HM023.gnm1.ann1.WZN8.cds.fna.gz -1e54f2cfd59f10fbae6f2fd308c78c4e ./CHANGES.HM023.gnm1.ann1.WZN8.txt -b24c88e4ffa99ab03e3494bb2f1336a9 ./medtr.HM023.gnm1.ann1.WZN8.cds.bed.gz.tbi -351356eca00070e8cff0c0e420af2bb2 ./medtr.HM023.gnm1.ann1.WZN8.legfed_v1_0.M65K.gfa.tsv.gz -46412323d936b0552d190f9c1a3e4f55 ./medtr.HM023.gnm1.ann1.WZN8.phytozome_10_2.HFNR.gfa.tsv.gz -fc232e919551e56b5cc3a772c3d405ad ./medtr.HM023.gnm1.ann1.WZN8.cds.bed.gz -9eb43114d4868b29a2c645755aa01fd2 ./MANIFEST.HM023.gnm1.ann1.WZN8.correspondence.yml -953d835ff6e0f0e0548fe46b2a2a9d89 ./medtr.HM023.gnm1.ann1.WZN8.gene_models_main.gff3.gz -2af23a3206c33d49dd607db2f26f22cf ./medtr.HM023.gnm1.ann1.WZN8.cds.fna.gz.gzi -71614b01ea828f72383c462ae409876d ./busco/medtr.HM023.gnm1.ann1.WZN8.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.HM023.gnm1.ann1.WZN8.protein.faa.gz_busco.txt -2e463554d948817fdb2016df14ab44a4 ./medtr.HM023.gnm1.ann1.WZN8.protein.faa.gz -8910e80affd20e5e109fb634e8f9e760 ./medtr.HM023.gnm1.ann1.WZN8.mrna.fna.gz.gzi -84a011a9c95ced09aad373004dc8577a ./medtr.HM023.gnm1.ann1.WZN8.protein.faa.gz.fai +1e54f2cfd59f10fbae6f2fd308c78c4e Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/CHANGES.HM023.gnm1.ann1.WZN8.txt +9eb43114d4868b29a2c645755aa01fd2 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/MANIFEST.HM023.gnm1.ann1.WZN8.correspondence.yml +9c1e17c0987cdf3d6cabbf20d95d4c01 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/MANIFEST.HM023.gnm1.ann1.WZN8.descriptions.yml +f2951c023b90551bd4f0ce247d1b40df Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.cds.fna.gz +6e31d74e793996a4ac52af44976f15f9 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.cds.fna.gz.fai +2af23a3206c33d49dd607db2f26f22cf Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.cds.fna.gz.gzi +b0b9cd9616ba0740e3a9fffa2fae75f8 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.gene_models_main.bed.gz +12b5f729f30abb118c12197e02cfedb2 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.gene_models_main.bed.gz.tbi +953d835ff6e0f0e0548fe46b2a2a9d89 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.gene_models_main.gff3.gz +4f51675bd53a98bf7957e6a8336f4665 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.gene_models_main.gff3.gz.tbi +b228965d292a67ce39eb9f3c921b3dd8 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.iprscan.gff3.gz +aa9752e21ab56b19c1303c7df8409f0e Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.iprscan.gff3.gz.tbi +351356eca00070e8cff0c0e420af2bb2 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.legfed_v1_0.M65K.gfa.tsv.gz +f749ef883813b482f6ff26247f4e5f44 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.mrna.fna.gz +b94043fa6ce764afbf7daab034c65d83 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.mrna.fna.gz.fai +8910e80affd20e5e109fb634e8f9e760 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.mrna.fna.gz.gzi +46412323d936b0552d190f9c1a3e4f55 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.phytozome_10_2.HFNR.gfa.tsv.gz +2e463554d948817fdb2016df14ab44a4 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.protein.faa.gz +84a011a9c95ced09aad373004dc8577a Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.protein.faa.gz.fai +48beaaa437e397abd745b8155c5e6b79 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/medtr.HM023.gnm1.ann1.WZN8.protein.faa.gz.gzi +e80f4701f58ca7b950dd47968b30ec15 Medicago/truncatula/annotations/HM023.gnm1.ann1.WZN8/README.HM023.gnm1.ann1.WZN8.yml diff --git a/Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/CHECKSUM.HM034.gnm1.ann1.YR6S.md5 b/Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/CHECKSUM.HM034.gnm1.ann1.YR6S.md5 index 29044448..cf341761 100644 --- a/Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/CHECKSUM.HM034.gnm1.ann1.YR6S.md5 +++ b/Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/CHECKSUM.HM034.gnm1.ann1.YR6S.md5 @@ -1,25 +1,21 @@ -a625c7ace7112970934be04c4875d164 ./medtr.HM034.gnm1.ann1.YR6S.protein.faa.gz.gzi -6d716effd52f4a38112d19e518a6a35b ./medtr.HM034.gnm1.ann1.YR6S.phytozome_10_2.HFNR.gfa.tsv.gz -1afee0f10fb4321cacf7bf3b46054f52 ./MANIFEST.HM034.gnm1.ann1.YR6S.descriptions.yml -5b0242fd191a2b7ac9f9fff66530b385 ./README.HM034.gnm1.ann1.YR6S.yml -b4afb17ea1927a4e9326338de0629993 ./MANIFEST.HM034.gnm1.ann1.YR6S.correspondence.yml -e25418e64382821cecebf6995d872cbb ./medtr.HM034.gnm1.ann1.YR6S.gene_models_main.gff3.gz -d4c0e9d7eb9699f53a089284912a08f7 ./medtr.HM034.gnm1.ann1.YR6S.cds.bed.gz.tbi -1b73a50c1b79177e773b6694aa9f92ca ./medtr.HM034.gnm1.ann1.YR6S.mrna.fna.gz.fai -ceba646847aca3a42db2d7bed7386f4a ./BUSCO/medtr.HM034.gnm1.ann1.YR6S.busco.fabales_odb10.short_summary.json -aac0845ecc146a85f3af632fdcb8726f ./BUSCO/medtr.HM034.gnm1.ann1.YR6S.busco.fabales_odb10.short_summary.txt -7f2a07d3e2551d87259e28d8444b33b7 ./BUSCO/medtr.HM034.gnm1.ann1.YR6S.busco.fabales_odb10.full_table.tsv.gz -45254ef3a9909b3bbff93e856e36f991 ./medtr.HM034.gnm1.ann1.YR6S.cds.bed.gz -c156565cc69f8e156b32b053674c1e59 ./medtr.HM034.gnm1.ann1.YR6S.cds.fna.gz.gzi -2ea355b1ad54bb8e89815d007a7aa3e5 ./medtr.HM034.gnm1.ann1.YR6S.iprscan.gff3.gz -1f9ed8ae4dd53b5d3858be100069994d ./medtr.HM034.gnm1.ann1.YR6S.protein.faa.gz -c7461115fc8272d4a41ed886c48e6ba7 ./medtr.HM034.gnm1.ann1.YR6S.mrna.fna.gz -c07f9646c63e0d6ef404af196d51f071 ./medtr.HM034.gnm1.ann1.YR6S.cds.fna.gz.fai -1c227a58339b42bf4ed303fda3ac142c ./medtr.HM034.gnm1.ann1.YR6S.cds.fna.gz -a395525ac02648db0cb26b825f6b606f ./medtr.HM034.gnm1.ann1.YR6S.gene_models_main.gff3.gz.tbi -369aab50e316826c0cfabdb23c783400 ./busco/medtr.HM034.gnm1.ann1.YR6S.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.HM034.gnm1.ann1.YR6S.protein.faa.gz_busco.txt -c277891034cf668413cd1aaa87fe545f ./medtr.HM034.gnm1.ann1.YR6S.mrna.fna.gz.gzi -2f3287f7873b05601effe80c68aeaf17 ./medtr.HM034.gnm1.ann1.YR6S.legfed_v1_0.M65K.gfa.tsv.gz -b5e7a7e2f0691190450bd21254aa9245 ./medtr.HM034.gnm1.ann1.YR6S.iprscan.gff3.gz.tbi -1e54f2cfd59f10fbae6f2fd308c78c4e ./CHANGES.HM034.gnm1.ann1.YR6S.txt -4aacc51658f7040f295afa1ac1354b81 ./medtr.HM034.gnm1.ann1.YR6S.protein.faa.gz.fai +1e54f2cfd59f10fbae6f2fd308c78c4e Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/CHANGES.HM034.gnm1.ann1.YR6S.txt +b4afb17ea1927a4e9326338de0629993 Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/MANIFEST.HM034.gnm1.ann1.YR6S.correspondence.yml +1afee0f10fb4321cacf7bf3b46054f52 Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/MANIFEST.HM034.gnm1.ann1.YR6S.descriptions.yml +1c227a58339b42bf4ed303fda3ac142c Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.cds.fna.gz +c07f9646c63e0d6ef404af196d51f071 Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.cds.fna.gz.fai +c156565cc69f8e156b32b053674c1e59 Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.cds.fna.gz.gzi +dc1fdb8a9fa9c388250f7b52a51cdfe7 Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.gene_models_main.bed.gz +0b1a7b3e7a554eb43f3c05c66e786ac8 Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.gene_models_main.bed.gz.tbi +e25418e64382821cecebf6995d872cbb Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.gene_models_main.gff3.gz +a395525ac02648db0cb26b825f6b606f Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.gene_models_main.gff3.gz.tbi +2ea355b1ad54bb8e89815d007a7aa3e5 Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.iprscan.gff3.gz +b5e7a7e2f0691190450bd21254aa9245 Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.iprscan.gff3.gz.tbi +2f3287f7873b05601effe80c68aeaf17 Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.legfed_v1_0.M65K.gfa.tsv.gz +c7461115fc8272d4a41ed886c48e6ba7 Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.mrna.fna.gz +1b73a50c1b79177e773b6694aa9f92ca Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.mrna.fna.gz.fai +c277891034cf668413cd1aaa87fe545f Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.mrna.fna.gz.gzi +6d716effd52f4a38112d19e518a6a35b Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.phytozome_10_2.HFNR.gfa.tsv.gz +1f9ed8ae4dd53b5d3858be100069994d Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.protein.faa.gz +4aacc51658f7040f295afa1ac1354b81 Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.protein.faa.gz.fai +a625c7ace7112970934be04c4875d164 Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/medtr.HM034.gnm1.ann1.YR6S.protein.faa.gz.gzi +5b0242fd191a2b7ac9f9fff66530b385 Medicago/truncatula/annotations/HM034.gnm1.ann1.YR6S/README.HM034.gnm1.ann1.YR6S.yml diff --git a/Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/CHECKSUM.HM050.gnm1.ann1.GWRX.md5 b/Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/CHECKSUM.HM050.gnm1.ann1.GWRX.md5 index 82899f74..f899ce81 100644 --- a/Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/CHECKSUM.HM050.gnm1.ann1.GWRX.md5 +++ b/Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/CHECKSUM.HM050.gnm1.ann1.GWRX.md5 @@ -1,25 +1,21 @@ -8c10d57a8630092a1217af9913d4d178 ./medtr.HM050.gnm1.ann1.GWRX.iprscan.gff3.gz.tbi -4c19ca7b780cd63c24c82d03026bb37a ./medtr.HM050.gnm1.ann1.GWRX.mrna.fna.gz.fai -d2c6c41eb3b4822d3ff15c062cb9da6f ./medtr.HM050.gnm1.ann1.GWRX.gene_models_main.gff3.gz -a66081c341fee9ec4079ace9e3dc4d9e ./medtr.HM050.gnm1.ann1.GWRX.cds.fna.gz.fai -9f065f415237b5eaf5159c80cfc60b6d ./medtr.HM050.gnm1.ann1.GWRX.iprscan.gff3.gz -ccea05ef86486662705daea48e5aa0da ./medtr.HM050.gnm1.ann1.GWRX.cds.fna.gz -37cc5419ade81a23e208a69891dbcd50 ./busco/medtr.HM050.gnm1.ann1.GWRX.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.HM050.gnm1.ann1.GWRX.protein.faa.gz_busco.txt -a08a393f582b3e34216afbf0a809a89a ./medtr.HM050.gnm1.ann1.GWRX.protein.faa.gz.gzi -5fe99a1e169cd255a6dff9f62328330b ./MANIFEST.HM050.gnm1.ann1.GWRX.correspondence.yml -bbb1ea17a78da7c904b49d85670be0cd ./BUSCO/medtr.HM050.gnm1.ann1.GWRX.busco.fabales_odb10.short_summary.json -7fa93c1eb9c2f08d10b581fd710bb038 ./BUSCO/medtr.HM050.gnm1.ann1.GWRX.busco.fabales_odb10.full_table.tsv.gz -fe37fb0789d84e78a508b366341e3bc4 ./BUSCO/medtr.HM050.gnm1.ann1.GWRX.busco.fabales_odb10.short_summary.txt -ac86e68b4bc1d468049fc77af3186983 ./medtr.HM050.gnm1.ann1.GWRX.protein.faa.gz.fai -653967c163c48b0684b9d3ed24b94f9c ./README.HM050.gnm1.ann1.GWRX.yml -a81034af1a1c77fa092955b241d76045 ./medtr.HM050.gnm1.ann1.GWRX.legfed_v1_0.M65K.gfa.tsv.gz -182d486e4fcb24acdbd6baccf53b96df ./medtr.HM050.gnm1.ann1.GWRX.cds.bed.gz -6dc7d892bd3925cf219cba3ff63c7df9 ./medtr.HM050.gnm1.ann1.GWRX.phytozome_10_2.HFNR.gfa.tsv.gz -b892a2b4dd55b66d9db3678c48e48283 ./medtr.HM050.gnm1.ann1.GWRX.cds.bed.gz.tbi -7ce2c1f54ebbf3905c6d61310df0f84a ./MANIFEST.HM050.gnm1.ann1.GWRX.descriptions.yml -d45cd30ab1913b14699aaf47305c5c4d ./medtr.HM050.gnm1.ann1.GWRX.gene_models_main.gff3.gz.tbi -85065cbca98fbc90008d87c57b1da6e8 ./medtr.HM050.gnm1.ann1.GWRX.mrna.fna.gz -d3bd840b215235f47321a96bbb8ff823 ./medtr.HM050.gnm1.ann1.GWRX.cds.fna.gz.gzi -5e535ce1f532a860a2a5cd2c5d644020 ./medtr.HM050.gnm1.ann1.GWRX.mrna.fna.gz.gzi -1e54f2cfd59f10fbae6f2fd308c78c4e ./CHANGES.HM050.gnm1.ann1.GWRX.txt -f17af972149c9f94196ba257a0da4bf3 ./medtr.HM050.gnm1.ann1.GWRX.protein.faa.gz +1e54f2cfd59f10fbae6f2fd308c78c4e Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/CHANGES.HM050.gnm1.ann1.GWRX.txt +5fe99a1e169cd255a6dff9f62328330b Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/MANIFEST.HM050.gnm1.ann1.GWRX.correspondence.yml +7ce2c1f54ebbf3905c6d61310df0f84a Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/MANIFEST.HM050.gnm1.ann1.GWRX.descriptions.yml +ccea05ef86486662705daea48e5aa0da Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.cds.fna.gz +a66081c341fee9ec4079ace9e3dc4d9e Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.cds.fna.gz.fai +d3bd840b215235f47321a96bbb8ff823 Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.cds.fna.gz.gzi +8ed46d36af791fe39cdfbbe9a271aa64 Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.gene_models_main.bed.gz +24542a7e0f3fed87344b78f4030b3875 Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.gene_models_main.bed.gz.tbi +d2c6c41eb3b4822d3ff15c062cb9da6f Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.gene_models_main.gff3.gz +d45cd30ab1913b14699aaf47305c5c4d Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.gene_models_main.gff3.gz.tbi +9f065f415237b5eaf5159c80cfc60b6d Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.iprscan.gff3.gz +8c10d57a8630092a1217af9913d4d178 Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.iprscan.gff3.gz.tbi +a81034af1a1c77fa092955b241d76045 Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.legfed_v1_0.M65K.gfa.tsv.gz +85065cbca98fbc90008d87c57b1da6e8 Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.mrna.fna.gz +4c19ca7b780cd63c24c82d03026bb37a Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.mrna.fna.gz.fai +5e535ce1f532a860a2a5cd2c5d644020 Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.mrna.fna.gz.gzi +6dc7d892bd3925cf219cba3ff63c7df9 Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.phytozome_10_2.HFNR.gfa.tsv.gz +f17af972149c9f94196ba257a0da4bf3 Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.protein.faa.gz +ac86e68b4bc1d468049fc77af3186983 Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.protein.faa.gz.fai +a08a393f582b3e34216afbf0a809a89a Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/medtr.HM050.gnm1.ann1.GWRX.protein.faa.gz.gzi +653967c163c48b0684b9d3ed24b94f9c Medicago/truncatula/annotations/HM050.gnm1.ann1.GWRX/README.HM050.gnm1.ann1.GWRX.yml diff --git a/Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/CHECKSUM.HM056.gnm1.ann1.CHP6.md5 b/Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/CHECKSUM.HM056.gnm1.ann1.CHP6.md5 index bd7ee7e2..b0c0a918 100644 --- a/Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/CHECKSUM.HM056.gnm1.ann1.CHP6.md5 +++ b/Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/CHECKSUM.HM056.gnm1.ann1.CHP6.md5 @@ -1,25 +1,21 @@ -814404be232848595935d2ba16eb9130 ./medtr.HM056.gnm1.ann1.CHP6.phytozome_10_2.HFNR.gfa.tsv.gz -5be8bb010b64f56593ea6e9b2b8c4263 ./medtr.HM056.gnm1.ann1.CHP6.iprscan.gff3.gz.tbi -413e2189273cd2ecc63c6722954d96d4 ./medtr.HM056.gnm1.ann1.CHP6.cds.bed.gz -6987da7ed4690f9aa4bec54cf54fc5a6 ./medtr.HM056.gnm1.ann1.CHP6.iprscan.gff3.gz -5e0a66a186cbb068acc41dd31b73acdb ./medtr.HM056.gnm1.ann1.CHP6.gene_models_main.gff3.gz -48b59e30b3081a8c5d3e17b59ea693c7 ./MANIFEST.HM056.gnm1.ann1.CHP6.descriptions.yml -1e54f2cfd59f10fbae6f2fd308c78c4e ./CHANGES.HM056.gnm1.ann1.CHP6.txt -ef5fceb74fc46d3a1f2d7b2e351a5fa8 ./busco/medtr.HM056.gnm1.ann1.CHP6.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.HM056.gnm1.ann1.CHP6.protein.faa.gz_busco.txt -0863efd37ba5e8d4d5ac5ba731691bdf ./medtr.HM056.gnm1.ann1.CHP6.mrna.fna.gz.fai -36727f82450f2813fe7ea688c24d044d ./medtr.HM056.gnm1.ann1.CHP6.legfed_v1_0.M65K.gfa.tsv.gz -93d8972bc5945dcf2bc28c86b4a7a581 ./medtr.HM056.gnm1.ann1.CHP6.cds.fna.gz.fai -7634a300560f9342e46e7721ee6fabfb ./medtr.HM056.gnm1.ann1.CHP6.protein.faa.gz.gzi -1d2b570bd90368232ec6d3af7889abd4 ./medtr.HM056.gnm1.ann1.CHP6.cds.fna.gz.gzi -205eab14fdcf915997f3d8c32c6049ad ./medtr.HM056.gnm1.ann1.CHP6.protein.faa.gz.fai -6ef276fb035fc930139f3b301b9f1a9b ./medtr.HM056.gnm1.ann1.CHP6.protein.faa.gz -4f15bf8243c341b95ef6bf529162a723 ./medtr.HM056.gnm1.ann1.CHP6.mrna.fna.gz.gzi -183ca18179f5e89f7ecd525abdc99fc0 ./MANIFEST.HM056.gnm1.ann1.CHP6.correspondence.yml -55d49b8a8a181d524d6988c7d7ff87c6 ./medtr.HM056.gnm1.ann1.CHP6.mrna.fna.gz -263274fffc1a79125b466cba3cb2743c ./medtr.HM056.gnm1.ann1.CHP6.gene_models_main.gff3.gz.tbi -610a67d570a72ddad96e2bd35e0683b4 ./README.HM056.gnm1.ann1.CHP6.yml -f1bb6a9286af1f30a9fb3e6803001af3 ./BUSCO/medtr.HM056.gnm1.ann1.CHP6.busco.fabales_odb10.full_table.tsv.gz -aa95b482d86a2c0321a641c4bcec722c ./BUSCO/medtr.HM056.gnm1.ann1.CHP6.busco.fabales_odb10.short_summary.txt -cac00847bafb04af6acc4ed4849d9fa3 ./BUSCO/medtr.HM056.gnm1.ann1.CHP6.busco.fabales_odb10.short_summary.json -30d2c6b175409f442fa0f4594b9f81b2 ./medtr.HM056.gnm1.ann1.CHP6.cds.bed.gz.tbi -f4e402ff748034e46432f67de8f5e71d ./medtr.HM056.gnm1.ann1.CHP6.cds.fna.gz +1e54f2cfd59f10fbae6f2fd308c78c4e Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/CHANGES.HM056.gnm1.ann1.CHP6.txt +183ca18179f5e89f7ecd525abdc99fc0 Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/MANIFEST.HM056.gnm1.ann1.CHP6.correspondence.yml +48b59e30b3081a8c5d3e17b59ea693c7 Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/MANIFEST.HM056.gnm1.ann1.CHP6.descriptions.yml +f4e402ff748034e46432f67de8f5e71d Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.cds.fna.gz +93d8972bc5945dcf2bc28c86b4a7a581 Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.cds.fna.gz.fai +1d2b570bd90368232ec6d3af7889abd4 Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.cds.fna.gz.gzi +96b9ddcee730a206a535be40301b139a Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.gene_models_main.bed.gz +85d6b42c783098cf0a563048ed8fcd2e Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.gene_models_main.bed.gz.tbi +5e0a66a186cbb068acc41dd31b73acdb Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.gene_models_main.gff3.gz +263274fffc1a79125b466cba3cb2743c Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.gene_models_main.gff3.gz.tbi +6987da7ed4690f9aa4bec54cf54fc5a6 Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.iprscan.gff3.gz +5be8bb010b64f56593ea6e9b2b8c4263 Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.iprscan.gff3.gz.tbi +36727f82450f2813fe7ea688c24d044d Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.legfed_v1_0.M65K.gfa.tsv.gz +55d49b8a8a181d524d6988c7d7ff87c6 Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.mrna.fna.gz +0863efd37ba5e8d4d5ac5ba731691bdf Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.mrna.fna.gz.fai +4f15bf8243c341b95ef6bf529162a723 Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.mrna.fna.gz.gzi +814404be232848595935d2ba16eb9130 Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.phytozome_10_2.HFNR.gfa.tsv.gz +6ef276fb035fc930139f3b301b9f1a9b Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.protein.faa.gz +205eab14fdcf915997f3d8c32c6049ad Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.protein.faa.gz.fai +7634a300560f9342e46e7721ee6fabfb Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/medtr.HM056.gnm1.ann1.CHP6.protein.faa.gz.gzi +610a67d570a72ddad96e2bd35e0683b4 Medicago/truncatula/annotations/HM056.gnm1.ann1.CHP6/README.HM056.gnm1.ann1.CHP6.yml diff --git a/Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/CHECKSUM.HM058.gnm1.ann1.LXPZ.md5 b/Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/CHECKSUM.HM058.gnm1.ann1.LXPZ.md5 index 86b8892a..e15c2440 100644 --- a/Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/CHECKSUM.HM058.gnm1.ann1.LXPZ.md5 +++ b/Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/CHECKSUM.HM058.gnm1.ann1.LXPZ.md5 @@ -1,25 +1,21 @@ -1e54f2cfd59f10fbae6f2fd308c78c4e ./CHANGES.HM058.gnm1.ann1.LXPZ.txt -d324887b9992660820f90e20e09ddcc9 ./medtr.HM058.gnm1.ann1.LXPZ.cds.fna.gz -03e7fe9e3252dd05edfc59482d7a0131 ./medtr.HM058.gnm1.ann1.LXPZ.protein.faa.gz.gzi -f14dc6dfa135edfaa427eb10365b04eb ./medtr.HM058.gnm1.ann1.LXPZ.legfed_v1_0.M65K.gfa.tsv.gz -99dee270c161648c4fde0be8d0cd28ae ./medtr.HM058.gnm1.ann1.LXPZ.iprscan.gff3.gz -993f884991f0758eca72b66bbdca57db ./medtr.HM058.gnm1.ann1.LXPZ.iprscan.gff3.gz.tbi -e0bf50c1b3d30ac351cbf2610b478035 ./medtr.HM058.gnm1.ann1.LXPZ.cds.fna.gz.fai -2c77a5e9051723ae99227775bfa6e933 ./medtr.HM058.gnm1.ann1.LXPZ.gene_models_main.gff3.gz.tbi -537915b5f18d3cfac7a7d00c0523a7d4 ./README.HM058.gnm1.ann1.LXPZ.yml -1e0f0369f9f26826b21232b35ae1be6c ./BUSCO/medtr.HM058.gnm1.ann1.LXPZ.busco.fabales_odb10.short_summary.json -9c1365b4a5f5f966c166a5182966086c ./BUSCO/medtr.HM058.gnm1.ann1.LXPZ.busco.fabales_odb10.full_table.tsv.gz -d5e2892ab1838599d2751e2b65893e8c ./BUSCO/medtr.HM058.gnm1.ann1.LXPZ.busco.fabales_odb10.short_summary.txt -b71be5adfdd20ba1b1413f2eff59cd19 ./medtr.HM058.gnm1.ann1.LXPZ.mrna.fna.gz.fai -d98ecf7404b19864e1a80db0cf1d14d9 ./medtr.HM058.gnm1.ann1.LXPZ.mrna.fna.gz.gzi -93b029a6d9c633cd82e991f7a86c3df5 ./medtr.HM058.gnm1.ann1.LXPZ.cds.fna.gz.gzi -52c3b71a65187f38c519731c354ef289 ./medtr.HM058.gnm1.ann1.LXPZ.mrna.fna.gz -03c7c4dd0f25324016f0f0f9e57f3bf7 ./medtr.HM058.gnm1.ann1.LXPZ.protein.faa.gz -fbcbaddbdc11b0b81605faef34113807 ./busco/medtr.HM058.gnm1.ann1.LXPZ.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.HM058.gnm1.ann1.LXPZ.protein.faa.gz_busco.txt -ea54e8e3b87ca8ecd5747c26b0312247 ./MANIFEST.HM058.gnm1.ann1.LXPZ.descriptions.yml -09c06cf7b1ad61966acbd4da3fe7b535 ./medtr.HM058.gnm1.ann1.LXPZ.gene_models_main.gff3.gz -a75a74b6f21f583a884938e99d1a457f ./medtr.HM058.gnm1.ann1.LXPZ.cds.bed.gz -d657625b4f81309c6a0d4511d4f7c9ea ./medtr.HM058.gnm1.ann1.LXPZ.cds.bed.gz.tbi -3f1478b28e36dc420493c28099bf1b80 ./medtr.HM058.gnm1.ann1.LXPZ.phytozome_10_2.HFNR.gfa.tsv.gz -5c4d434dedd8e15cd718e87e4c4b4d7a ./medtr.HM058.gnm1.ann1.LXPZ.protein.faa.gz.fai -016401229a849bcaeb4e9c1d979978b0 ./MANIFEST.HM058.gnm1.ann1.LXPZ.correspondence.yml +1e54f2cfd59f10fbae6f2fd308c78c4e Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/CHANGES.HM058.gnm1.ann1.LXPZ.txt +016401229a849bcaeb4e9c1d979978b0 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/MANIFEST.HM058.gnm1.ann1.LXPZ.correspondence.yml +ea54e8e3b87ca8ecd5747c26b0312247 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/MANIFEST.HM058.gnm1.ann1.LXPZ.descriptions.yml +d324887b9992660820f90e20e09ddcc9 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.cds.fna.gz +e0bf50c1b3d30ac351cbf2610b478035 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.cds.fna.gz.fai +93b029a6d9c633cd82e991f7a86c3df5 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.cds.fna.gz.gzi +0e8f221176051961d67ec4457596d595 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.gene_models_main.bed.gz +d06b60d24898d1e5510f7e7abcde6108 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.gene_models_main.bed.gz.tbi +09c06cf7b1ad61966acbd4da3fe7b535 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.gene_models_main.gff3.gz +2c77a5e9051723ae99227775bfa6e933 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.gene_models_main.gff3.gz.tbi +99dee270c161648c4fde0be8d0cd28ae Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.iprscan.gff3.gz +993f884991f0758eca72b66bbdca57db Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.iprscan.gff3.gz.tbi +f14dc6dfa135edfaa427eb10365b04eb Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.legfed_v1_0.M65K.gfa.tsv.gz +52c3b71a65187f38c519731c354ef289 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.mrna.fna.gz +b71be5adfdd20ba1b1413f2eff59cd19 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.mrna.fna.gz.fai +d98ecf7404b19864e1a80db0cf1d14d9 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.mrna.fna.gz.gzi +3f1478b28e36dc420493c28099bf1b80 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.phytozome_10_2.HFNR.gfa.tsv.gz +03c7c4dd0f25324016f0f0f9e57f3bf7 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.protein.faa.gz +5c4d434dedd8e15cd718e87e4c4b4d7a Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.protein.faa.gz.fai +03e7fe9e3252dd05edfc59482d7a0131 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/medtr.HM058.gnm1.ann1.LXPZ.protein.faa.gz.gzi +537915b5f18d3cfac7a7d00c0523a7d4 Medicago/truncatula/annotations/HM058.gnm1.ann1.LXPZ/README.HM058.gnm1.ann1.LXPZ.yml diff --git a/Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/CHECKSUM.HM060.gnm1.ann1.H41P.md5 b/Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/CHECKSUM.HM060.gnm1.ann1.H41P.md5 index 0d1c97e7..50297cec 100644 --- a/Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/CHECKSUM.HM060.gnm1.ann1.H41P.md5 +++ b/Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/CHECKSUM.HM060.gnm1.ann1.H41P.md5 @@ -1,25 +1,21 @@ -24a6027a796dfabed841c0ebd75f59a3 ./medtr.HM060.gnm1.ann1.H41P.cds.fna.gz -56286b1aed2e49c86b5fbbc98bc56c57 ./medtr.HM060.gnm1.ann1.H41P.mrna.fna.gz.gzi -4a0cd6b1ea2b516f65f93a76d856c944 ./medtr.HM060.gnm1.ann1.H41P.iprscan.gff3.gz.tbi -91dd7dd0c7318aed81a5ff17f333a3e3 ./medtr.HM060.gnm1.ann1.H41P.cds.fna.gz.fai -91079eaf0c598be9da776451ad0b99fa ./medtr.HM060.gnm1.ann1.H41P.legfed_v1_0.M65K.gfa.tsv.gz -5b597b4188725e6b5f5f14e4b3b8df27 ./BUSCO/medtr.HM060.gnm1.ann1.H41P.busco.fabales_odb10.short_summary.json -a574004b6a36077f278703b0df729179 ./BUSCO/medtr.HM060.gnm1.ann1.H41P.busco.fabales_odb10.short_summary.txt -b1807e4deb3c58df27ae2a3838f76ec5 ./BUSCO/medtr.HM060.gnm1.ann1.H41P.busco.fabales_odb10.full_table.tsv.gz -1e54f2cfd59f10fbae6f2fd308c78c4e ./CHANGES.HM060.gnm1.ann1.H41P.txt -f9d4bb0aa6801c55202b71e403a7d7ee ./medtr.HM060.gnm1.ann1.H41P.protein.faa.gz.gzi -9226dddf6a3e522436eb34f1fcbb3bb9 ./medtr.HM060.gnm1.ann1.H41P.protein.faa.gz.fai -f4e58089413fff0a1e36148fe2bbe26b ./medtr.HM060.gnm1.ann1.H41P.iprscan.gff3.gz -2589354baccae1aab4c21713491315e2 ./MANIFEST.HM060.gnm1.ann1.H41P.descriptions.yml -44cc0e8b25703ef139a9d8714f9827e8 ./busco/medtr.HM060.gnm1.ann1.H41P.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.HM060.gnm1.ann1.H41P.protein.faa.gz_busco.txt -4d10eabe5f81dbdce7aa17f4770a1e93 ./medtr.HM060.gnm1.ann1.H41P.cds.fna.gz.gzi -2bae3863cd4c82dc2d6ad261cc85ddfe ./README.HM060.gnm1.ann1.H41P.yml -6d3571ff7623ba90b682af7af55d9834 ./medtr.HM060.gnm1.ann1.H41P.protein.faa.gz -2b5b18c7685de499d2f8053c08cc6eb9 ./medtr.HM060.gnm1.ann1.H41P.mrna.fna.gz -24384d687781a65833742936f278303c ./MANIFEST.HM060.gnm1.ann1.H41P.correspondence.yml -6863c1f30e0deeb0cd623de16a515d7b ./medtr.HM060.gnm1.ann1.H41P.mrna.fna.gz.fai -aac0a568f86cac9877549f9e302cd489 ./medtr.HM060.gnm1.ann1.H41P.cds.bed.gz -de8c9d052487da5cd920c50529a72d97 ./medtr.HM060.gnm1.ann1.H41P.gene_models_main.gff3.gz -4cadb9a0c237882ccdc8533eff77b975 ./medtr.HM060.gnm1.ann1.H41P.cds.bed.gz.tbi -299554cea969a94df648250b41eec66e ./medtr.HM060.gnm1.ann1.H41P.gene_models_main.gff3.gz.tbi -9158e6598949181d0f5fce0ad48a5d15 ./medtr.HM060.gnm1.ann1.H41P.phytozome_10_2.HFNR.gfa.tsv.gz +1e54f2cfd59f10fbae6f2fd308c78c4e Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/CHANGES.HM060.gnm1.ann1.H41P.txt +24384d687781a65833742936f278303c Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/MANIFEST.HM060.gnm1.ann1.H41P.correspondence.yml +2589354baccae1aab4c21713491315e2 Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/MANIFEST.HM060.gnm1.ann1.H41P.descriptions.yml +24a6027a796dfabed841c0ebd75f59a3 Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.cds.fna.gz +91dd7dd0c7318aed81a5ff17f333a3e3 Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.cds.fna.gz.fai +4d10eabe5f81dbdce7aa17f4770a1e93 Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.cds.fna.gz.gzi +94c0eccf8c21f43eaeaaec822bf74b38 Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.gene_models_main.bed.gz +572e5e92972b0965ba96c06e03f44e37 Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.gene_models_main.bed.gz.tbi +de8c9d052487da5cd920c50529a72d97 Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.gene_models_main.gff3.gz +299554cea969a94df648250b41eec66e Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.gene_models_main.gff3.gz.tbi +f4e58089413fff0a1e36148fe2bbe26b Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.iprscan.gff3.gz +4a0cd6b1ea2b516f65f93a76d856c944 Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.iprscan.gff3.gz.tbi +91079eaf0c598be9da776451ad0b99fa Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.legfed_v1_0.M65K.gfa.tsv.gz +2b5b18c7685de499d2f8053c08cc6eb9 Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.mrna.fna.gz +6863c1f30e0deeb0cd623de16a515d7b Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.mrna.fna.gz.fai +56286b1aed2e49c86b5fbbc98bc56c57 Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.mrna.fna.gz.gzi +9158e6598949181d0f5fce0ad48a5d15 Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.phytozome_10_2.HFNR.gfa.tsv.gz +6d3571ff7623ba90b682af7af55d9834 Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.protein.faa.gz +9226dddf6a3e522436eb34f1fcbb3bb9 Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.protein.faa.gz.fai +f9d4bb0aa6801c55202b71e403a7d7ee Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/medtr.HM060.gnm1.ann1.H41P.protein.faa.gz.gzi +2bae3863cd4c82dc2d6ad261cc85ddfe Medicago/truncatula/annotations/HM060.gnm1.ann1.H41P/README.HM060.gnm1.ann1.H41P.yml diff --git a/Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/CHECKSUM.HM095.gnm1.ann1.55W4.md5 b/Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/CHECKSUM.HM095.gnm1.ann1.55W4.md5 index 20c31bb0..7448c7ac 100644 --- a/Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/CHECKSUM.HM095.gnm1.ann1.55W4.md5 +++ b/Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/CHECKSUM.HM095.gnm1.ann1.55W4.md5 @@ -1,25 +1,21 @@ -b808fc57da6d58b3899ba8c13b0a3fc3 ./medtr.HM095.gnm1.ann1.55W4.legfed_v1_0.M65K.gfa.tsv.gz -cbf616adf22e1948476f80c4146f1580 ./medtr.HM095.gnm1.ann1.55W4.cds.fna.gz -725b7dafa1145f93fdfdfd6de716c7f9 ./medtr.HM095.gnm1.ann1.55W4.protein.faa.gz.fai -df63782b514e180d3adcd5e0684d7af0 ./BUSCO/medtr.HM095.gnm1.ann1.55W4.busco.fabales_odb10.short_summary.json -5c356024a179847a8035d6dabe66565d ./BUSCO/medtr.HM095.gnm1.ann1.55W4.busco.fabales_odb10.full_table.tsv.gz -6111882baf5ccb3065292381a0c8a442 ./BUSCO/medtr.HM095.gnm1.ann1.55W4.busco.fabales_odb10.short_summary.txt -c3a4c617793f57ec23020dd83144d7a8 ./medtr.HM095.gnm1.ann1.55W4.cds.bed.gz.tbi -ec0794c3fa482c39e4dc15493556150f ./medtr.HM095.gnm1.ann1.55W4.protein.faa.gz -007cd841b2bc855fbadc65688c45a866 ./medtr.HM095.gnm1.ann1.55W4.mrna.fna.gz.gzi -6cbc8cae5bed1b9710a2ae79a4568f43 ./medtr.HM095.gnm1.ann1.55W4.cds.fna.gz.gzi -88634ae94bded13991a8bafe27a08df2 ./medtr.HM095.gnm1.ann1.55W4.cds.fna.gz.fai -73656109de5752b6dac9be7a7943250a ./medtr.HM095.gnm1.ann1.55W4.phytozome_10_2.HFNR.gfa.tsv.gz -0d30c04abea4d104f0c60bbbb2c56ad1 ./medtr.HM095.gnm1.ann1.55W4.mrna.fna.gz.fai -0e0c398372937ae882e639515a98c842 ./medtr.HM095.gnm1.ann1.55W4.iprscan.gff3.gz.tbi -63f7cf039af2d6d2c6391c82f7ea5cc2 ./medtr.HM095.gnm1.ann1.55W4.gene_models_main.gff3.gz.tbi -1ab1a2c2a694dfc2d63052dfa3f6eeba ./medtr.HM095.gnm1.ann1.55W4.cds.bed.gz -5b2a0f9d92b85015fa309eb60878852f ./medtr.HM095.gnm1.ann1.55W4.iprscan.gff3.gz -aa29d92238e40a9a1aa01bd6b2b55700 ./MANIFEST.HM095.gnm1.ann1.55W4.descriptions.yml -3da8d6627e0fe18d4be1a230f0bba14e ./MANIFEST.HM095.gnm1.ann1.55W4.correspondence.yml -f2caaab478f5073a8dbd035bf3cf421d ./medtr.HM095.gnm1.ann1.55W4.gene_models_main.gff3.gz -1e54f2cfd59f10fbae6f2fd308c78c4e ./CHANGES.HM095.gnm1.ann1.55W4.txt -13b5c32b3d8d431cb17809bdd68c0816 ./medtr.HM095.gnm1.ann1.55W4.protein.faa.gz.gzi -8632a3cc9164fb8fc762bcb90f3408bb ./README.HM095.gnm1.ann1.55W4.yml -2935646d0277061f43285160e28afb3c ./busco/medtr.HM095.gnm1.ann1.55W4.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.HM095.gnm1.ann1.55W4.protein.faa.gz_busco.txt -a6ecc8465c42329284d845828ea043cc ./medtr.HM095.gnm1.ann1.55W4.mrna.fna.gz +1e54f2cfd59f10fbae6f2fd308c78c4e Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/CHANGES.HM095.gnm1.ann1.55W4.txt +3da8d6627e0fe18d4be1a230f0bba14e Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/MANIFEST.HM095.gnm1.ann1.55W4.correspondence.yml +aa29d92238e40a9a1aa01bd6b2b55700 Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/MANIFEST.HM095.gnm1.ann1.55W4.descriptions.yml +cbf616adf22e1948476f80c4146f1580 Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.cds.fna.gz +88634ae94bded13991a8bafe27a08df2 Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.cds.fna.gz.fai +6cbc8cae5bed1b9710a2ae79a4568f43 Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.cds.fna.gz.gzi +f6a2d986eb51e2bc8f8aa6ef5e62a858 Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.gene_models_main.bed.gz +88964397351fa1fed9450dd146aad6ce Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.gene_models_main.bed.gz.tbi +f2caaab478f5073a8dbd035bf3cf421d Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.gene_models_main.gff3.gz +63f7cf039af2d6d2c6391c82f7ea5cc2 Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.gene_models_main.gff3.gz.tbi +5b2a0f9d92b85015fa309eb60878852f Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.iprscan.gff3.gz +0e0c398372937ae882e639515a98c842 Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.iprscan.gff3.gz.tbi +b808fc57da6d58b3899ba8c13b0a3fc3 Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.legfed_v1_0.M65K.gfa.tsv.gz +a6ecc8465c42329284d845828ea043cc Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.mrna.fna.gz +0d30c04abea4d104f0c60bbbb2c56ad1 Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.mrna.fna.gz.fai +007cd841b2bc855fbadc65688c45a866 Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.mrna.fna.gz.gzi +73656109de5752b6dac9be7a7943250a Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.phytozome_10_2.HFNR.gfa.tsv.gz +ec0794c3fa482c39e4dc15493556150f Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.protein.faa.gz +725b7dafa1145f93fdfdfd6de716c7f9 Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.protein.faa.gz.fai +13b5c32b3d8d431cb17809bdd68c0816 Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/medtr.HM095.gnm1.ann1.55W4.protein.faa.gz.gzi +8632a3cc9164fb8fc762bcb90f3408bb Medicago/truncatula/annotations/HM095.gnm1.ann1.55W4/README.HM095.gnm1.ann1.55W4.yml diff --git a/Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/CHECKSUM.HM125.gnm1.ann1.KY5W.md5 b/Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/CHECKSUM.HM125.gnm1.ann1.KY5W.md5 index 8d7babf1..3e8e888b 100644 --- a/Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/CHECKSUM.HM125.gnm1.ann1.KY5W.md5 +++ b/Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/CHECKSUM.HM125.gnm1.ann1.KY5W.md5 @@ -1,25 +1,21 @@ -a79813b61d11306145f3a50fc94d98f3 ./medtr.HM125.gnm1.ann1.KY5W.mrna.fna.gz -c8f4c3aa855e28e296eda40c5e84eb07 ./medtr.HM125.gnm1.ann1.KY5W.protein.faa.gz.gzi -1e54f2cfd59f10fbae6f2fd308c78c4e ./CHANGES.HM125.gnm1.ann1.KY5W.txt -f3b08f6c2ad017a6ee996bcc69eea757 ./medtr.HM125.gnm1.ann1.KY5W.gene_models_main.gff3.gz -f7631d7602135a33fdbf2bdb140746a5 ./medtr.HM125.gnm1.ann1.KY5W.cds.fna.gz.fai -2032e753aac191c979f811e61a63d4a6 ./medtr.HM125.gnm1.ann1.KY5W.legfed_v1_0.M65K.gfa.tsv.gz -b196b96578142fc60e43279bc9cda27f ./BUSCO/medtr.HM125.gnm1.ann1.KY5W.busco.fabales_odb10.short_summary.json -53d3f90bcaaef1c5003733926b4c33e3 ./BUSCO/medtr.HM125.gnm1.ann1.KY5W.busco.fabales_odb10.short_summary.txt -e48dda3f6d394024df50c1b6a347b47c ./BUSCO/medtr.HM125.gnm1.ann1.KY5W.busco.fabales_odb10.full_table.tsv.gz -3f908d24de79a20645ac478a23d83e3d ./medtr.HM125.gnm1.ann1.KY5W.iprscan.gff3.gz -9408d2a167b4c8d587dc204f613b8f85 ./medtr.HM125.gnm1.ann1.KY5W.cds.fna.gz -eac8f9121ac002bc59838b5f2dc596ec ./medtr.HM125.gnm1.ann1.KY5W.mrna.fna.gz.fai -ba1aaeb2d79f3cb3d917a1f66b5d50e5 ./medtr.HM125.gnm1.ann1.KY5W.mrna.fna.gz.gzi -b2cf82594fcafd7601ad0017f1848a40 ./medtr.HM125.gnm1.ann1.KY5W.phytozome_10_2.HFNR.gfa.tsv.gz -e49b685d0ded3007bb5a473bd15e2800 ./medtr.HM125.gnm1.ann1.KY5W.cds.bed.gz -7e6bea7de85254fb1a3c976f92cf63ea ./MANIFEST.HM125.gnm1.ann1.KY5W.descriptions.yml -2b1fb67619e2250f4c9d917dc1eb3fac ./medtr.HM125.gnm1.ann1.KY5W.cds.bed.gz.tbi -5de6ce88ccb1d305d46fa75405060fd5 ./medtr.HM125.gnm1.ann1.KY5W.gene_models_main.gff3.gz.tbi -be190bd9928cd334be5e93c45b683856 ./README.HM125.gnm1.ann1.KY5W.yml -45c5994359f9abb452580d274aa0c634 ./medtr.HM125.gnm1.ann1.KY5W.protein.faa.gz -d244e438c6526bd02d16efc635c248e3 ./MANIFEST.HM125.gnm1.ann1.KY5W.correspondence.yml -4fed8dee3ecca6c20dc74d95f5fcb1a5 ./medtr.HM125.gnm1.ann1.KY5W.cds.fna.gz.gzi -2c61541081e8c000fbbb070aa2b57a0d ./medtr.HM125.gnm1.ann1.KY5W.iprscan.gff3.gz.tbi -17e6a5e708edb111cffe08cc9e6e1197 ./busco/medtr.HM125.gnm1.ann1.KY5W.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.HM125.gnm1.ann1.KY5W.protein.faa.gz_busco.txt -b5df694a6cfadba5d38e3d1e2dd88d20 ./medtr.HM125.gnm1.ann1.KY5W.protein.faa.gz.fai +1e54f2cfd59f10fbae6f2fd308c78c4e Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/CHANGES.HM125.gnm1.ann1.KY5W.txt +d244e438c6526bd02d16efc635c248e3 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/MANIFEST.HM125.gnm1.ann1.KY5W.correspondence.yml +7e6bea7de85254fb1a3c976f92cf63ea Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/MANIFEST.HM125.gnm1.ann1.KY5W.descriptions.yml +9408d2a167b4c8d587dc204f613b8f85 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.cds.fna.gz +f7631d7602135a33fdbf2bdb140746a5 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.cds.fna.gz.fai +4fed8dee3ecca6c20dc74d95f5fcb1a5 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.cds.fna.gz.gzi +78afd071fdd1b9e036a816a8a57acef6 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.gene_models_main.bed.gz +153372e28e7a55fa5f86c2bbc243e319 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.gene_models_main.bed.gz.tbi +f3b08f6c2ad017a6ee996bcc69eea757 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.gene_models_main.gff3.gz +5de6ce88ccb1d305d46fa75405060fd5 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.gene_models_main.gff3.gz.tbi +3f908d24de79a20645ac478a23d83e3d Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.iprscan.gff3.gz +2c61541081e8c000fbbb070aa2b57a0d Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.iprscan.gff3.gz.tbi +2032e753aac191c979f811e61a63d4a6 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.legfed_v1_0.M65K.gfa.tsv.gz +a79813b61d11306145f3a50fc94d98f3 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.mrna.fna.gz +eac8f9121ac002bc59838b5f2dc596ec Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.mrna.fna.gz.fai +ba1aaeb2d79f3cb3d917a1f66b5d50e5 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.mrna.fna.gz.gzi +b2cf82594fcafd7601ad0017f1848a40 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.phytozome_10_2.HFNR.gfa.tsv.gz +45c5994359f9abb452580d274aa0c634 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.protein.faa.gz +b5df694a6cfadba5d38e3d1e2dd88d20 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.protein.faa.gz.fai +c8f4c3aa855e28e296eda40c5e84eb07 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/medtr.HM125.gnm1.ann1.KY5W.protein.faa.gz.gzi +be190bd9928cd334be5e93c45b683856 Medicago/truncatula/annotations/HM125.gnm1.ann1.KY5W/README.HM125.gnm1.ann1.KY5W.yml diff --git a/Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/CHECKSUM.HM129.gnm1.ann1.7FTD.md5 b/Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/CHECKSUM.HM129.gnm1.ann1.7FTD.md5 index 6069b29b..85ec972d 100644 --- a/Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/CHECKSUM.HM129.gnm1.ann1.7FTD.md5 +++ b/Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/CHECKSUM.HM129.gnm1.ann1.7FTD.md5 @@ -1,25 +1,21 @@ -a849bbb1b3628aaac1647a5b69309216 ./busco/medtr.HM129.gnm1.ann1.7FTD.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.HM129.gnm1.ann1.7FTD.protein.faa.gz_busco.txt -893d2f11f458d39b1f4e1e4d83871c4b ./medtr.HM129.gnm1.ann1.7FTD.cds.bed.gz.tbi -e70528556be937295ca30a47be3b43dd ./medtr.HM129.gnm1.ann1.7FTD.cds.fna.gz -1e54f2cfd59f10fbae6f2fd308c78c4e ./CHANGES.HM129.gnm1.ann1.7FTD.txt -a9f6d477bd9ece7a57b612eb0e1e1705 ./medtr.HM129.gnm1.ann1.7FTD.protein.faa.gz.gzi -3da3e8dd623a6015265a19f7bf3de84e ./medtr.HM129.gnm1.ann1.7FTD.iprscan.gff3.gz -a93c8cd8635f87479192ffa42371ac56 ./medtr.HM129.gnm1.ann1.7FTD.protein.faa.gz -dcf2f53d923f061f3e47b7908e303655 ./medtr.HM129.gnm1.ann1.7FTD.phytozome_10_2.HFNR.gfa.tsv.gz -88e25ca4dec63069f4f048e83d444b6c ./medtr.HM129.gnm1.ann1.7FTD.cds.fna.gz.gzi -e3dac7c1a8798312b6305d196554385f ./medtr.HM129.gnm1.ann1.7FTD.gene_models_main.gff3.gz -50c78ade01604a686bd0baae897096a5 ./medtr.HM129.gnm1.ann1.7FTD.legfed_v1_0.M65K.gfa.tsv.gz -00d7c9535f93ccfde5f4b27abe5da4cd ./medtr.HM129.gnm1.ann1.7FTD.mrna.fna.gz.fai -c03ec27509a57ed79b2e4f419569cbc8 ./README.HM129.gnm1.ann1.7FTD.yml -fa16f2fefb74091e27feace7d7e3bc9d ./medtr.HM129.gnm1.ann1.7FTD.iprscan.gff3.gz.tbi -e92c8c9ead21c8c7936abf78fb8750ac ./MANIFEST.HM129.gnm1.ann1.7FTD.descriptions.yml -1e0be98763463c8451cb3775a26d6d89 ./medtr.HM129.gnm1.ann1.7FTD.mrna.fna.gz.gzi -57642e8a8e41d40fc9fe7547ed85d16b ./medtr.HM129.gnm1.ann1.7FTD.cds.fna.gz.fai -d6ea1aad6643900fbb8d514ad4229029 ./medtr.HM129.gnm1.ann1.7FTD.mrna.fna.gz -7f667811f158f1f78ec22d7cf3e577bc ./medtr.HM129.gnm1.ann1.7FTD.cds.bed.gz -bb6b33f034a63e1674bc5f190a87d8b2 ./MANIFEST.HM129.gnm1.ann1.7FTD.correspondence.yml -37bb871bb07b424a8757819296c2b738 ./BUSCO/medtr.HM129.gnm1.ann1.7FTD.busco.fabales_odb10.short_summary.txt -317c9ee51fcdf98a271642b009f43ffd ./BUSCO/medtr.HM129.gnm1.ann1.7FTD.busco.fabales_odb10.short_summary.json -395729f381b7b63c762bfb526480a733 ./BUSCO/medtr.HM129.gnm1.ann1.7FTD.busco.fabales_odb10.full_table.tsv.gz -2d1f3b482efa80a18d80a6d1412c16b5 ./medtr.HM129.gnm1.ann1.7FTD.gene_models_main.gff3.gz.tbi -a6bd099a9aff3b9ce9354f220e2137ae ./medtr.HM129.gnm1.ann1.7FTD.protein.faa.gz.fai +1e54f2cfd59f10fbae6f2fd308c78c4e Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/CHANGES.HM129.gnm1.ann1.7FTD.txt +bb6b33f034a63e1674bc5f190a87d8b2 Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/MANIFEST.HM129.gnm1.ann1.7FTD.correspondence.yml +e92c8c9ead21c8c7936abf78fb8750ac Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/MANIFEST.HM129.gnm1.ann1.7FTD.descriptions.yml +e70528556be937295ca30a47be3b43dd Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.cds.fna.gz +57642e8a8e41d40fc9fe7547ed85d16b Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.cds.fna.gz.fai +88e25ca4dec63069f4f048e83d444b6c Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.cds.fna.gz.gzi +7f1c734fd286be59afdb2427c78d5741 Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.gene_models_main.bed.gz +0a60eaae5b8d714b5c70b7d651394ad0 Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.gene_models_main.bed.gz.tbi +e3dac7c1a8798312b6305d196554385f Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.gene_models_main.gff3.gz +2d1f3b482efa80a18d80a6d1412c16b5 Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.gene_models_main.gff3.gz.tbi +3da3e8dd623a6015265a19f7bf3de84e Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.iprscan.gff3.gz +fa16f2fefb74091e27feace7d7e3bc9d Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.iprscan.gff3.gz.tbi +50c78ade01604a686bd0baae897096a5 Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.legfed_v1_0.M65K.gfa.tsv.gz +d6ea1aad6643900fbb8d514ad4229029 Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.mrna.fna.gz +00d7c9535f93ccfde5f4b27abe5da4cd Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.mrna.fna.gz.fai +1e0be98763463c8451cb3775a26d6d89 Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.mrna.fna.gz.gzi +dcf2f53d923f061f3e47b7908e303655 Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.phytozome_10_2.HFNR.gfa.tsv.gz +a93c8cd8635f87479192ffa42371ac56 Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.protein.faa.gz +a6bd099a9aff3b9ce9354f220e2137ae Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.protein.faa.gz.fai +a9f6d477bd9ece7a57b612eb0e1e1705 Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/medtr.HM129.gnm1.ann1.7FTD.protein.faa.gz.gzi +c03ec27509a57ed79b2e4f419569cbc8 Medicago/truncatula/annotations/HM129.gnm1.ann1.7FTD/README.HM129.gnm1.ann1.7FTD.yml diff --git a/Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/CHECKSUM.HM185.gnm1.ann1.GB3D.md5 b/Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/CHECKSUM.HM185.gnm1.ann1.GB3D.md5 index f5f4371b..edb08095 100644 --- a/Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/CHECKSUM.HM185.gnm1.ann1.GB3D.md5 +++ b/Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/CHECKSUM.HM185.gnm1.ann1.GB3D.md5 @@ -1,25 +1,21 @@ -c5a683ac04fdb62b9ad56e6f2ccef594 ./medtr.HM185.gnm1.ann1.GB3D.legfed_v1_0.M65K.gfa.tsv.gz -c2630e05514b1d0de012e4de238ebe3a ./MANIFEST.HM185.gnm1.ann1.GB3D.descriptions.yml -32074caf040a70f8a519bc64d8e9a6a6 ./medtr.HM185.gnm1.ann1.GB3D.iprscan.gff3.gz -c6ad8f216cb62e2e718f5e7f1bff17e5 ./medtr.HM185.gnm1.ann1.GB3D.cds.fna.gz -71921730c03d38704783c6311a068091 ./medtr.HM185.gnm1.ann1.GB3D.protein.faa.gz.fai -3d4fdc03a7328ab4cebd7981371e6d88 ./medtr.HM185.gnm1.ann1.GB3D.mrna.fna.gz.fai -401cb526cb80051f283e36586b0b42a6 ./medtr.HM185.gnm1.ann1.GB3D.gene_models_main.gff3.gz.tbi -a5db19b58934a0b717ab1551838cb532 ./medtr.HM185.gnm1.ann1.GB3D.iprscan.gff3.gz.tbi -2f5497a0d1e32ce14bbcc5f386478e3e ./medtr.HM185.gnm1.ann1.GB3D.cds.fna.gz.fai -1c2c11317b2dec9695e6924680143c49 ./BUSCO/medtr.HM185.gnm1.ann1.GB3D.busco.fabales_odb10.short_summary.json -872ba6934c1cd05d3fde0daf1c9195e2 ./BUSCO/medtr.HM185.gnm1.ann1.GB3D.busco.fabales_odb10.short_summary.txt -a2559f79984d316b7a76051f21959ccf ./BUSCO/medtr.HM185.gnm1.ann1.GB3D.busco.fabales_odb10.full_table.tsv.gz -609ffd11aedc4b3ae3f3c24dcd412bef ./medtr.HM185.gnm1.ann1.GB3D.phytozome_10_2.HFNR.gfa.tsv.gz -d84b06aa3f3cb9d6d4005d19bfcfe546 ./medtr.HM185.gnm1.ann1.GB3D.gene_models_main.gff3.gz -1e54f2cfd59f10fbae6f2fd308c78c4e ./CHANGES.HM185.gnm1.ann1.GB3D.txt -f3eccf3c03c06004802ea93f1823f3c8 ./medtr.HM185.gnm1.ann1.GB3D.cds.fna.gz.gzi -79eff47e6322b3fc2cff61672ce5cceb ./README.HM185.gnm1.ann1.GB3D.yml -bd838b88b4b9ec4ec56031746d5c1783 ./busco/medtr.HM185.gnm1.ann1.GB3D.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.HM185.gnm1.ann1.GB3D.protein.faa.gz_busco.txt -18ec6cc28c54e043d467afdf07162770 ./medtr.HM185.gnm1.ann1.GB3D.mrna.fna.gz.gzi -8f3f431c6f0650dfe621834ca0755dcd ./medtr.HM185.gnm1.ann1.GB3D.protein.faa.gz -a804426a0d3d4c23b4c873f88ee16f76 ./medtr.HM185.gnm1.ann1.GB3D.mrna.fna.gz -afbaffee4f45fd29a7315370a909aba4 ./MANIFEST.HM185.gnm1.ann1.GB3D.correspondence.yml -75d36e6b8f9598697aaeb1c7493983b0 ./medtr.HM185.gnm1.ann1.GB3D.cds.bed.gz -d488c144e2fa79634271691ac40f36f2 ./medtr.HM185.gnm1.ann1.GB3D.cds.bed.gz.tbi -7599137a43fd8640ce72550a77de37f6 ./medtr.HM185.gnm1.ann1.GB3D.protein.faa.gz.gzi +1e54f2cfd59f10fbae6f2fd308c78c4e Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/CHANGES.HM185.gnm1.ann1.GB3D.txt +afbaffee4f45fd29a7315370a909aba4 Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/MANIFEST.HM185.gnm1.ann1.GB3D.correspondence.yml +c2630e05514b1d0de012e4de238ebe3a Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/MANIFEST.HM185.gnm1.ann1.GB3D.descriptions.yml +c6ad8f216cb62e2e718f5e7f1bff17e5 Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.cds.fna.gz +2f5497a0d1e32ce14bbcc5f386478e3e Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.cds.fna.gz.fai +f3eccf3c03c06004802ea93f1823f3c8 Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.cds.fna.gz.gzi +1f73adbe514522985eb4c6312315609e Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.gene_models_main.bed.gz +a7c7923997282c530a0c5667cbbff702 Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.gene_models_main.bed.gz.tbi +d84b06aa3f3cb9d6d4005d19bfcfe546 Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.gene_models_main.gff3.gz +401cb526cb80051f283e36586b0b42a6 Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.gene_models_main.gff3.gz.tbi +32074caf040a70f8a519bc64d8e9a6a6 Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.iprscan.gff3.gz +a5db19b58934a0b717ab1551838cb532 Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.iprscan.gff3.gz.tbi +c5a683ac04fdb62b9ad56e6f2ccef594 Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.legfed_v1_0.M65K.gfa.tsv.gz +a804426a0d3d4c23b4c873f88ee16f76 Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.mrna.fna.gz +3d4fdc03a7328ab4cebd7981371e6d88 Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.mrna.fna.gz.fai +18ec6cc28c54e043d467afdf07162770 Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.mrna.fna.gz.gzi +609ffd11aedc4b3ae3f3c24dcd412bef Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.phytozome_10_2.HFNR.gfa.tsv.gz +8f3f431c6f0650dfe621834ca0755dcd Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.protein.faa.gz +71921730c03d38704783c6311a068091 Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.protein.faa.gz.fai +7599137a43fd8640ce72550a77de37f6 Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/medtr.HM185.gnm1.ann1.GB3D.protein.faa.gz.gzi +79eff47e6322b3fc2cff61672ce5cceb Medicago/truncatula/annotations/HM185.gnm1.ann1.GB3D/README.HM185.gnm1.ann1.GB3D.yml diff --git a/Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/CHECKSUM.HM324.gnm1.ann1.SQH2.md5 b/Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/CHECKSUM.HM324.gnm1.ann1.SQH2.md5 index 915b2b41..c191735d 100644 --- a/Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/CHECKSUM.HM324.gnm1.ann1.SQH2.md5 +++ b/Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/CHECKSUM.HM324.gnm1.ann1.SQH2.md5 @@ -1,25 +1,21 @@ -dae8f2cfc5c7905f3d001eb409ad7809 ./MANIFEST.HM324.gnm1.ann1.SQH2.correspondence.yml -7d21e960ba3e960a653f83a1fa03cdc1 ./medtr.HM324.gnm1.ann1.SQH2.protein.faa.gz.gzi -d888384ee82a9377a822aa3a4e79bed1 ./medtr.HM324.gnm1.ann1.SQH2.iprscan.gff3.gz.tbi -e2708635058cb9a39b9f42b8676f8db4 ./medtr.HM324.gnm1.ann1.SQH2.cds.bed.gz.tbi -8cf87411914253f30c38dd98041fc517 ./medtr.HM324.gnm1.ann1.SQH2.gene_models_main.gff3.gz -47ec165d3d7b3dc04c0c1361a0e27158 ./medtr.HM324.gnm1.ann1.SQH2.mrna.fna.gz.gzi -0598d8baa222e4c236a9146adee28e41 ./busco/medtr.HM324.gnm1.ann1.SQH2.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.HM324.gnm1.ann1.SQH2.protein.faa.gz_busco.txt -1e54f2cfd59f10fbae6f2fd308c78c4e ./CHANGES.HM324.gnm1.ann1.SQH2.txt -34bcae98255b1881dc590c59337d022d ./medtr.HM324.gnm1.ann1.SQH2.protein.faa.gz -66667ba0f4c9fa6bd70479cbe84aa9a8 ./medtr.HM324.gnm1.ann1.SQH2.cds.fna.gz -b0492d116f4624464a630cf1a66550f2 ./MANIFEST.HM324.gnm1.ann1.SQH2.descriptions.yml -c17d7872ed6d28efa20ea3f638b05e47 ./medtr.HM324.gnm1.ann1.SQH2.cds.fna.gz.gzi -f8348b7e2ad886b2d90bac08ac208d53 ./medtr.HM324.gnm1.ann1.SQH2.cds.bed.gz -a34c0d9d9791be4ac6fcd04a81e1899a ./medtr.HM324.gnm1.ann1.SQH2.mrna.fna.gz -da321c83f87227d03d5e8a179469ab12 ./BUSCO/medtr.HM324.gnm1.ann1.SQH2.busco.fabales_odb10.short_summary.json -2faaf8a005f7a00be08720a461908707 ./BUSCO/medtr.HM324.gnm1.ann1.SQH2.busco.fabales_odb10.full_table.tsv.gz -23136037e1b4188245b70b273b869f11 ./BUSCO/medtr.HM324.gnm1.ann1.SQH2.busco.fabales_odb10.short_summary.txt -1179b48fb926ea53b05dcae40a9e41ce ./medtr.HM324.gnm1.ann1.SQH2.legfed_v1_0.M65K.gfa.tsv.gz -e27f45999b73942aba71f184a4fbd0f6 ./medtr.HM324.gnm1.ann1.SQH2.phytozome_10_2.HFNR.gfa.tsv.gz -22e65b613252732ca9c5a5fcfd9aa05c ./medtr.HM324.gnm1.ann1.SQH2.cds.fna.gz.fai -ddfb408784506ec39d6875f206a86590 ./medtr.HM324.gnm1.ann1.SQH2.mrna.fna.gz.fai -16f6cde5ce5b3826839a980f9c59de34 ./medtr.HM324.gnm1.ann1.SQH2.gene_models_main.gff3.gz.tbi -676e77752d0319859e71c19f35a0fa30 ./README.HM324.gnm1.ann1.SQH2.yml -0233dc5f80c75734ef1bb858eabd902c ./medtr.HM324.gnm1.ann1.SQH2.iprscan.gff3.gz -3bfae934ce5521dcf2c4b9032f49db48 ./medtr.HM324.gnm1.ann1.SQH2.protein.faa.gz.fai +1e54f2cfd59f10fbae6f2fd308c78c4e Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/CHANGES.HM324.gnm1.ann1.SQH2.txt +dae8f2cfc5c7905f3d001eb409ad7809 Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/MANIFEST.HM324.gnm1.ann1.SQH2.correspondence.yml +b0492d116f4624464a630cf1a66550f2 Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/MANIFEST.HM324.gnm1.ann1.SQH2.descriptions.yml +66667ba0f4c9fa6bd70479cbe84aa9a8 Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.cds.fna.gz +22e65b613252732ca9c5a5fcfd9aa05c Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.cds.fna.gz.fai +c17d7872ed6d28efa20ea3f638b05e47 Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.cds.fna.gz.gzi +cf17b1658c5598da88910399c515d3f3 Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.gene_models_main.bed.gz +be1538625534044bd34dc83631e8da8f Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.gene_models_main.bed.gz.tbi +8cf87411914253f30c38dd98041fc517 Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.gene_models_main.gff3.gz +16f6cde5ce5b3826839a980f9c59de34 Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.gene_models_main.gff3.gz.tbi +0233dc5f80c75734ef1bb858eabd902c Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.iprscan.gff3.gz +d888384ee82a9377a822aa3a4e79bed1 Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.iprscan.gff3.gz.tbi +1179b48fb926ea53b05dcae40a9e41ce Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.legfed_v1_0.M65K.gfa.tsv.gz +a34c0d9d9791be4ac6fcd04a81e1899a Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.mrna.fna.gz +ddfb408784506ec39d6875f206a86590 Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.mrna.fna.gz.fai +47ec165d3d7b3dc04c0c1361a0e27158 Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.mrna.fna.gz.gzi +e27f45999b73942aba71f184a4fbd0f6 Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.phytozome_10_2.HFNR.gfa.tsv.gz +34bcae98255b1881dc590c59337d022d Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.protein.faa.gz +3bfae934ce5521dcf2c4b9032f49db48 Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.protein.faa.gz.fai +7d21e960ba3e960a653f83a1fa03cdc1 Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/medtr.HM324.gnm1.ann1.SQH2.protein.faa.gz.gzi +676e77752d0319859e71c19f35a0fa30 Medicago/truncatula/annotations/HM324.gnm1.ann1.SQH2/README.HM324.gnm1.ann1.SQH2.yml diff --git a/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/CHECKSUM.R108.gnmHiC_1.ann1.Y8NH.md5 b/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/CHECKSUM.R108.gnmHiC_1.ann1.Y8NH.md5 index 9a9d5faf..8ff16dc8 100644 --- a/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/CHECKSUM.R108.gnmHiC_1.ann1.Y8NH.md5 +++ b/Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/CHECKSUM.R108.gnmHiC_1.ann1.Y8NH.md5 @@ -1,21 +1,21 @@ -7959fcd49b40a0c9c0cd1620c2dd2dde ./medtr.R108.gnmHiC_1.ann1.Y8NH.gene_models_main.gff3.gz -5d67ba9fb99c3ebcdab0dfbdd09c2415 ./medtr.R108.gnmHiC_1.ann1.Y8NH.mrna.fna.gz.gzi -6056f0e63742ea53dbe38ae2e868c3e4 ./medtr.R108.gnmHiC_1.ann1.Y8NH.phytozome_10_2.HFNR.gfa.tsv.gz -89966b31e3fe9ff5c1ff5762c36a3e5c ./medtr.R108.gnmHiC_1.ann1.Y8NH.gene_models_main.gff3.gz.tbi -d474cba6e4e0f9e425711c61f6a4a81c ./medtr.R108.gnmHiC_1.ann1.Y8NH.cds.bed.gz -27606bc64afac54828298694a12a72a3 ./medtr.R108.gnmHiC_1.ann1.Y8NH.cds.fna.gz.fai -5735ed3d9075a36829a5034334be570f ./README.R108.gnmHiC_1.ann1.Y8NH.yml -600961025afdea1714d09b3e20d1729e ./medtr.R108.gnmHiC_1.ann1.Y8NH.protein.faa.gz.gzi -973ba8c801982136fa3cba531d42e2b4 ./medtr.R108.gnmHiC_1.ann1.Y8NH.id_map.txt 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+7d19b425e88997232ce5c11efdc41390 Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/medtr.R108.gnmHiC_1.ann1.Y8NH.mrna.fna.gz.fai +5d67ba9fb99c3ebcdab0dfbdd09c2415 Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/medtr.R108.gnmHiC_1.ann1.Y8NH.mrna.fna.gz.gzi +6056f0e63742ea53dbe38ae2e868c3e4 Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/medtr.R108.gnmHiC_1.ann1.Y8NH.phytozome_10_2.HFNR.gfa.tsv.gz +298402957f3f2eb07d1007603a8a567c Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/medtr.R108.gnmHiC_1.ann1.Y8NH.protein.faa.gz +38bfd6526e8cc52af8e53b2879186b3e Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/medtr.R108.gnmHiC_1.ann1.Y8NH.protein.faa.gz.fai +600961025afdea1714d09b3e20d1729e Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/medtr.R108.gnmHiC_1.ann1.Y8NH.protein.faa.gz.gzi +5735ed3d9075a36829a5034334be570f Medicago/truncatula/annotations/R108.gnmHiC_1.ann1.Y8NH/README.R108.gnmHiC_1.ann1.Y8NH.yml diff --git a/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/CHECKSUM.R108_HM340.gnm1.ann1.85YW.md5 b/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/CHECKSUM.R108_HM340.gnm1.ann1.85YW.md5 index f6a8769d..14373cde 100644 --- a/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/CHECKSUM.R108_HM340.gnm1.ann1.85YW.md5 +++ b/Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/CHECKSUM.R108_HM340.gnm1.ann1.85YW.md5 @@ -1,34 +1,28 @@ -56caa2e454443330af191b281cbb73b1 ./medtr.R108_HM340.gnm1.ann1.85YW.iprscan.gff3.gz.tbi -0529dd11a8aa5f7b83f7a57ebe0919ec ./medtr.R108_HM340.gnm1.ann1.85YW.protein_primary.faa.gz -b59487d3591d0def7f72b4fa550ee807 ./medtr.R108_HM340.gnm1.ann1.85YW.protein.faa.gz.fai -db3dd5d222cee79d47a525c4c2b18991 ./medtr.R108_HM340.gnm1.ann1.85YW.cds_primary.fna.gz.gzi -bae1913b7a7d0461c88c7151a28af3af ./medtr.R108_HM340.gnm1.ann1.85YW.mrna.fna.gz.gzi -e3134886c60a91d67bdcb4e0fee465b5 ./medtr.R108_HM340.gnm1.ann1.85YW.cds.fna.gz.fai -ad009498e78e9b6f6ddc3576568af2ba ./MANIFEST.R108_HM340.gnm1.ann1.85YW.descriptions.yml -76461836d8f9708114d640bfe0d2fad1 ./medtr.R108_HM340.gnm1.ann1.85YW.gene_models_main.gff3.gz -d2123f9778e2b517709ca5d33a0b40d2 ./medtr.R108_HM340.gnm1.ann1.85YW.cds_primary.fna.gz -986cf311f365f17240c2e777a53c67e0 ./BUSCO/medtr.R108_HM340.gnm1.ann1.85YW.busco.fabales_odb10.short_summary.json -eec6b45ac3d6e81e47908eedb3b838f9 ./BUSCO/medtr.R108_HM340.gnm1.ann1.85YW.busco.fabales_odb10.short_summary.txt -551047bca62cfabad7c6e5636695347e ./BUSCO/medtr.R108_HM340.gnm1.ann1.85YW.busco.fabales_odb10.full_table.tsv.gz -7eebc2ba0784056562d9084ab104d5a0 ./medtr.R108_HM340.gnm1.ann1.85YW.gcv_genes.gff3.gz -92422c8fdc0bb6851206dd04801d3212 ./MANIFEST.R108_HM340.gnm1.ann1.85YW.correspondence.yml -59ef0361274dad4b50a3d0fbdf344a38 ./medtr.R108_HM340.gnm1.ann1.85YW.cds.bed.gz -86632d53f6ce4c41c894ba4982c2dc2c ./medtr.R108_HM340.gnm1.ann1.85YW.protein_primary.faa.gz.fai -129da2f9459a04411159d280e1e281c6 ./medtr.R108_HM340.gnm1.ann1.85YW.protein_primary.faa.gz.gzi -4dd8bd622c7800971d3a04116fef0caf ./medtr.R108_HM340.gnm1.ann1.85YW.cds.bed.gz.tbi -cf12c3f6e5b0d6e667fb9999e03061f1 ./medtr.R108_HM340.gnm1.ann1.85YW.legfed_v1_0.M65K.gfa.tsv.gz -a7c0b8c984a2aeeed4ee167b9d59b14d ./busco/medtr.R108_HM340.gnm1.ann1.85YW.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.R108_HM340.gnm1.ann1.85YW.protein_primaryTranscript.faa.gz_busco.txt -aaad67bb1b9fa4d57ff6809eeda8ec4f ./busco/medtr.R108_HM340.gnm1.ann1.85YW.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.medtr.R108_HM340.gnm1.ann1.85YW.protein.faa.gz_busco.txt -6f8bc370e4bfdd95572940e343dfcbf2 ./medtr.R108_HM340.gnm1.ann1.85YW.iprscan.gff3.gz -9e274dec25fd35f52e8cbda43661a461 ./medtr.R108_HM340.gnm1.ann1.85YW.gene_models_main.gff3.gz.tbi -840147eb64323e986bf6c32ae7d56818 ./CHANGES.R108_HM340.gnm1.ann1.85YW.txt -95cd444fef7d9ea3eb69d44e9f467bfa ./medtr.R108_HM340.gnm1.ann1.85YW.cds.fna.gz -fe6d6009a5aafad8313a1d950b661a20 ./medtr.R108_HM340.gnm1.ann1.85YW.cds.fna.gz.gzi -3915888aa6ae2c1a54c59a67a5f54c4f ./medtr.R108_HM340.gnm1.ann1.85YW.phytozome_10_2.HFNR.gfa.tsv.gz -126150f9dbca92de7e990dd553dfee80 ./medtr.R108_HM340.gnm1.ann1.85YW.protein.faa.gz -335b48fb4e716d6a420238d7b53f593f ./medtr.R108_HM340.gnm1.ann1.85YW.legfed_v1_0.M65K.pathway.tsv.gz -1abd004e9708660396249a88bcce55bd ./medtr.R108_HM340.gnm1.ann1.85YW.mrna.fna.gz.fai -7fea7540818087f82289f4f5b0af3af3 ./medtr.R108_HM340.gnm1.ann1.85YW.mrna.fna.gz -0e9f6339ded7a3ce8ff2c8dd7a938fe2 ./medtr.R108_HM340.gnm1.ann1.85YW.cds_primary.fna.gz.fai -2592f09f0f1bb4c8c8c9b8401e3f13ab ./medtr.R108_HM340.gnm1.ann1.85YW.protein.faa.gz.gzi -8953760d64676d479079a5bd944cb679 ./README.R108_HM340.gnm1.ann1.85YW.yml +840147eb64323e986bf6c32ae7d56818 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/CHANGES.R108_HM340.gnm1.ann1.85YW.txt +92422c8fdc0bb6851206dd04801d3212 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/MANIFEST.R108_HM340.gnm1.ann1.85YW.correspondence.yml +ad009498e78e9b6f6ddc3576568af2ba Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/MANIFEST.R108_HM340.gnm1.ann1.85YW.descriptions.yml +d2123f9778e2b517709ca5d33a0b40d2 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.cds_primary.fna.gz +0e9f6339ded7a3ce8ff2c8dd7a938fe2 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.cds_primary.fna.gz.fai +db3dd5d222cee79d47a525c4c2b18991 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.cds_primary.fna.gz.gzi +95cd444fef7d9ea3eb69d44e9f467bfa Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.cds.fna.gz +e3134886c60a91d67bdcb4e0fee465b5 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.cds.fna.gz.fai +fe6d6009a5aafad8313a1d950b661a20 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.cds.fna.gz.gzi +7eebc2ba0784056562d9084ab104d5a0 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.gcv_genes.gff3.gz +81e44d41d73d6f40e75546f3f605cb2c Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.gene_models_main.bed.gz +0ab1b16e6403cfdf8fafe8a50d35ee74 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.gene_models_main.bed.gz.tbi +76461836d8f9708114d640bfe0d2fad1 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.gene_models_main.gff3.gz +9e274dec25fd35f52e8cbda43661a461 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.gene_models_main.gff3.gz.tbi +6f8bc370e4bfdd95572940e343dfcbf2 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.iprscan.gff3.gz +56caa2e454443330af191b281cbb73b1 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.iprscan.gff3.gz.tbi +cf12c3f6e5b0d6e667fb9999e03061f1 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.legfed_v1_0.M65K.gfa.tsv.gz +7fea7540818087f82289f4f5b0af3af3 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.mrna.fna.gz +1abd004e9708660396249a88bcce55bd Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.mrna.fna.gz.fai +bae1913b7a7d0461c88c7151a28af3af Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.mrna.fna.gz.gzi +3915888aa6ae2c1a54c59a67a5f54c4f Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.phytozome_10_2.HFNR.gfa.tsv.gz +0529dd11a8aa5f7b83f7a57ebe0919ec Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.protein_primary.faa.gz +86632d53f6ce4c41c894ba4982c2dc2c Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.protein_primary.faa.gz.fai +129da2f9459a04411159d280e1e281c6 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.protein_primary.faa.gz.gzi +126150f9dbca92de7e990dd553dfee80 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.protein.faa.gz +b59487d3591d0def7f72b4fa550ee807 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.protein.faa.gz.fai +2592f09f0f1bb4c8c8c9b8401e3f13ab Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/medtr.R108_HM340.gnm1.ann1.85YW.protein.faa.gz.gzi +8953760d64676d479079a5bd944cb679 Medicago/truncatula/annotations/R108_HM340.gnm1.ann1.85YW/README.R108_HM340.gnm1.ann1.85YW.yml diff --git a/Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/CHECKSUM.Frijol_Bayo.gnm1.ann1.ML22.md5 b/Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/CHECKSUM.Frijol_Bayo.gnm1.ann1.ML22.md5 index 59a57c25..cf30180c 100644 --- a/Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/CHECKSUM.Frijol_Bayo.gnm1.ann1.ML22.md5 +++ b/Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/CHECKSUM.Frijol_Bayo.gnm1.ann1.ML22.md5 @@ -1,31 +1,29 @@ -24896758a9fc6b3070cbb950ffa8312e ./README.Frijol_Bayo.gnm1.ann1.ML22.yml -d6f06d532414a9f3323fda9faac21e0e ./phaac.Frijol_Bayo.gnm1.ann1.ML22.cds.fna.gz -b9beb39c9e9fdb8f6f8cae9997a547c4 ./phaac.Frijol_Bayo.gnm1.ann1.ML22.mrna.fna.gz.fai -3e2b907bc49798d76025d7330c8bc0dd ./phaac.Frijol_Bayo.gnm1.ann1.ML22.protein_primary.faa.gz.fai -1b6912911138b22db9e09590cb3874ed ./phaac.Frijol_Bayo.gnm1.ann1.ML22.mrna_primary.fna.gz.gzi -e46ef5f5a0fbeabadbd8e4ae71a8308d ./MANIFEST.Frijol_Bayo.gnm1.ann1.ML22.descriptions.yml -c2f2563fb9b76203baf7c4e643934e55 ./phaac.Frijol_Bayo.gnm1.ann1.ML22.protein.faa.gz.gzi -2d33c84816cbf0cc8b5762a4280a0c1b ./phaac.Frijol_Bayo.gnm1.ann1.ML22.protein.faa.gz -a5d081ab5025e23bdd07aa6e2664d505 ./phaac.Frijol_Bayo.gnm1.ann1.ML22.iprscan.gff3.gz -2038c7bd9fa569cece6a19da80d6ce87 ./phaac.Frijol_Bayo.gnm1.ann1.ML22.cds.fna.gz.gzi -10999d5111d7d9820d55610442d70bf5 ./MANIFEST.Frijol_Bayo.gnm1.ann1.ML22.correspondence.yml -2483723ca7ce04add48bafd4f21dfaaf ./phaac.Frijol_Bayo.gnm1.ann1.ML22.gene_models_main.gff3.gz.tbi -ddd0b7a6542b7c75214ea20e7b64a174 ./phaac.Frijol_Bayo.gnm1.ann1.ML22.cds_primary.fna.gz.fai -58bb9b8113f0fef6c540cd5ee4cd7745 ./phaac.Frijol_Bayo.gnm1.ann1.ML22.mrna_primary.fna.gz -864869c66683bb63f63c46c8c3c66f7c ./phaac.Frijol_Bayo.gnm1.ann1.ML22.protein_primary.faa.gz -c0e8614e74c1d6bfbcaa2b8c79f8cbb9 ./phaac.Frijol_Bayo.gnm1.ann1.ML22.cds_primary.fna.gz.gzi -2b13e1992ec2cdca68d48bfdc27cfbc9 ./phaac.Frijol_Bayo.gnm1.ann1.ML22.cds_primary.fna.gz -81169cd90b3d11ba7d87f127a248b4e1 ./phaac.Frijol_Bayo.gnm1.ann1.ML22.cds.fna.gz.fai -616cc1683ff5deb1b74a13b506dc582a ./phaac.Frijol_Bayo.gnm1.ann1.ML22.legfed_v1_0.M65K.gfa.tsv.gz -519120de110b4f8beec4316cb834dd25 ./phaac.Frijol_Bayo.gnm1.ann1.ML22.gene_models_main.gff3.gz -4bbdb27b7984ab32c9e2556c517ed2dc ./phaac.Frijol_Bayo.gnm1.ann1.ML22.protein.faa.gz.fai -04413bbba7cb9c33cbb3970d2a2ec49a ./CHANGES.Frijol_Bayo.gnm1.ann1.ML22.txt -43f3c0f2b468718a2f66bb815178856d ./phaac.Frijol_Bayo.gnm1.ann1.ML22.mrna_primary.fna.gz.fai -7a81dd545dee980e4911ddee0d6882f9 ./phaac.Frijol_Bayo.gnm1.ann1.ML22.iprscan.gff3.gz.tbi -1f256573a5544811f02cda4f29845e89 ./phaac.Frijol_Bayo.gnm1.ann1.ML22.cds.bed.gz -c3044269644270b6092d74fc698edac2 ./BUSCO/phaac.Frijol_Bayo.gnm1.ann1.ML22.busco.fabales_odb10.full_table.tsv.gz -5d18bb28c43f11872ced0478c9f7ed18 ./BUSCO/phaac.Frijol_Bayo.gnm1.ann1.ML22.busco.fabales_odb10.short_summary.txt -d1a46d233c9c96d5e2b7f355f2139e5b ./BUSCO/phaac.Frijol_Bayo.gnm1.ann1.ML22.busco.fabales_odb10.short_summary.json -a9a814bdd9f86df58449f561c7804c3c ./phaac.Frijol_Bayo.gnm1.ann1.ML22.mrna.fna.gz.gzi -29ab3e8b662d8f9f4e06090ce78b91be ./phaac.Frijol_Bayo.gnm1.ann1.ML22.protein_primary.faa.gz.gzi -ca55821757915d26eebb67659a4ec90b ./phaac.Frijol_Bayo.gnm1.ann1.ML22.mrna.fna.gz +04413bbba7cb9c33cbb3970d2a2ec49a Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/CHANGES.Frijol_Bayo.gnm1.ann1.ML22.txt +10999d5111d7d9820d55610442d70bf5 Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/MANIFEST.Frijol_Bayo.gnm1.ann1.ML22.correspondence.yml +e46ef5f5a0fbeabadbd8e4ae71a8308d Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/MANIFEST.Frijol_Bayo.gnm1.ann1.ML22.descriptions.yml +2b13e1992ec2cdca68d48bfdc27cfbc9 Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.cds_primary.fna.gz +ddd0b7a6542b7c75214ea20e7b64a174 Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.cds_primary.fna.gz.fai +c0e8614e74c1d6bfbcaa2b8c79f8cbb9 Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.cds_primary.fna.gz.gzi +d6f06d532414a9f3323fda9faac21e0e Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.cds.fna.gz +81169cd90b3d11ba7d87f127a248b4e1 Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.cds.fna.gz.fai +2038c7bd9fa569cece6a19da80d6ce87 Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.cds.fna.gz.gzi +5f8793667824d88522b5ad8fd7b427b3 Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.gene_models_main.bed.gz +9749d1550e4ed589dc8638aeb5c91e56 Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.gene_models_main.bed.gz.tbi +519120de110b4f8beec4316cb834dd25 Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.gene_models_main.gff3.gz +2483723ca7ce04add48bafd4f21dfaaf Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.gene_models_main.gff3.gz.tbi +a5d081ab5025e23bdd07aa6e2664d505 Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.iprscan.gff3.gz +7a81dd545dee980e4911ddee0d6882f9 Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.iprscan.gff3.gz.tbi +616cc1683ff5deb1b74a13b506dc582a Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.legfed_v1_0.M65K.gfa.tsv.gz +58bb9b8113f0fef6c540cd5ee4cd7745 Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.mrna_primary.fna.gz +43f3c0f2b468718a2f66bb815178856d Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.mrna_primary.fna.gz.fai +1b6912911138b22db9e09590cb3874ed Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.mrna_primary.fna.gz.gzi +ca55821757915d26eebb67659a4ec90b Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.mrna.fna.gz +b9beb39c9e9fdb8f6f8cae9997a547c4 Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.mrna.fna.gz.fai +a9a814bdd9f86df58449f561c7804c3c Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.mrna.fna.gz.gzi +864869c66683bb63f63c46c8c3c66f7c Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.protein_primary.faa.gz +3e2b907bc49798d76025d7330c8bc0dd Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.protein_primary.faa.gz.fai +29ab3e8b662d8f9f4e06090ce78b91be Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.protein_primary.faa.gz.gzi +2d33c84816cbf0cc8b5762a4280a0c1b Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.protein.faa.gz +4bbdb27b7984ab32c9e2556c517ed2dc Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.protein.faa.gz.fai +c2f2563fb9b76203baf7c4e643934e55 Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/phaac.Frijol_Bayo.gnm1.ann1.ML22.protein.faa.gz.gzi +0fe7ea16f9a8aa5fc7c4b1b8b3ccfd57 Phaseolus/acutifolius/annotations/Frijol_Bayo.gnm1.ann1.ML22/README.Frijol_Bayo.gnm1.ann1.ML22.yml diff --git a/Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/CHECKSUM.W6_15578.gnm2.ann1.LVZ1.md5 b/Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/CHECKSUM.W6_15578.gnm2.ann1.LVZ1.md5 index 6dc2d5f8..2fb7487c 100644 --- a/Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/CHECKSUM.W6_15578.gnm2.ann1.LVZ1.md5 +++ b/Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/CHECKSUM.W6_15578.gnm2.ann1.LVZ1.md5 @@ -1,31 +1,28 @@ -c303030818d8b82819620b1a2f4ffb58 ./phaac.W6_15578.gnm2.ann1.LVZ1.mrna_primary.fna.gz.gzi -013dd27c1e1ce4e41fc65ce9a2cf6ff5 ./phaac.W6_15578.gnm2.ann1.LVZ1.mrna.fna.gz -079b5a9ec3a3b5792bd5505db2de272a ./phaac.W6_15578.gnm2.ann1.LVZ1.gene_models_main.gff3.gz.tbi -1c832c33402513f4510666b1b47695fe ./README.W6_15578.gnm2.ann1.LVZ1.yml -a3d7db7123bd5c73b59c243cb4f75968 ./phaac.W6_15578.gnm2.ann1.LVZ1.cds.fna.gz.fai -bcaf446fa452e680178648499f585ef5 ./BUSCO/phaac.W6_15578.gnm2.ann1.LVZ1.busco.fabales_odb10.short_summary.json -fc0d5b3eea35e3abffdfd20b57da6e61 ./BUSCO/phaac.W6_15578.gnm2.ann1.LVZ1.busco.fabales_odb10.short_summary.txt -a04aa39d06c4d18fd9664aade464f6c2 ./BUSCO/phaac.W6_15578.gnm2.ann1.LVZ1.busco.fabales_odb10.full_table.tsv.gz -8b41e2f133c57092b5a54a846f17c787 ./phaac.W6_15578.gnm2.ann1.LVZ1.legfed_v1_0.M65K.gfa.tsv.gz -7fc3ab34c2e6705e3c460121ae4919f3 ./phaac.W6_15578.gnm2.ann1.LVZ1.cds.bed.gz -2a6aa1b025af17e02c06ce6b40ab62de ./phaac.W6_15578.gnm2.ann1.LVZ1.protein_primary.faa.gz -6029f6a3ad0271711225a817a273daf4 ./phaac.W6_15578.gnm2.ann1.LVZ1.mrna_primary.fna.gz -f70222f547b56e347be914ce6add9ec5 ./phaac.W6_15578.gnm2.ann1.LVZ1.cds_primary.fna.gz.gzi -74a7f251c7bda472d28fc37a37d39924 ./phaac.W6_15578.gnm2.ann1.LVZ1.protein_primary.faa.gz.gzi -5c695946e3c42c8d984b25eb273eb877 ./phaac.W6_15578.gnm2.ann1.LVZ1.gene_models_main.gff3 -41a043ab81a72447b07ad903e515e500 ./phaac.W6_15578.gnm2.ann1.LVZ1.mrna.fna.gz.fai -a9dce8862205301396d920384e46d6d8 ./phaac.W6_15578.gnm2.ann1.LVZ1.protein.faa.gz.gzi -d10074b379afcb1200ba7facea377340 ./phaac.W6_15578.gnm2.ann1.LVZ1.mrna.fna.gz.gzi -13f1be7ba1b9283ac4f20f23495452e9 ./phaac.W6_15578.gnm2.ann1.LVZ1.cds.fna.gz -5de5ca5396d5c13260f97530a1cdb6f6 ./phaac.W6_15578.gnm2.ann1.LVZ1.protein.faa.gz.fai -41c728ddfad67ff81b8a96f35de0b81d ./phaac.W6_15578.gnm2.ann1.LVZ1.gene_models_main.gff3.gz -d579eed7e8f339f0d0f35f6fdd9f9ca6 ./phaac.W6_15578.gnm2.ann1.LVZ1.protein_primary.faa.gz.fai -17ba452ab5c89c7cf869ab578aa62204 ./phaac.W6_15578.gnm2.ann1.LVZ1.cds_primary.fna.gz.fai -77ad37f4695cc3e4ab3571b7a4418902 ./phaac.W6_15578.gnm2.ann1.LVZ1.cds.fna.gz.gzi -ddcf723e098d67b270175b0f6a6e8136 ./MANIFEST.W6_15578.gnm2.ann1.LVZ1.descriptions.yml -a07a8bf401307d2aac19b2477f38d140 ./phaac.W6_15578.gnm2.ann1.LVZ1.protein.faa.gz -6207013d2a55641ec07b237d9715b718 ./phaac.W6_15578.gnm2.ann1.LVZ1.cds_primary.fna.gz -845cef73d0e0aaff82deb8315ea730a5 ./MANIFEST.W6_15578.gnm2.ann1.LVZ1.correspondence.yml -db1e1aeb898d4bc8f32b34d5a2b95641 ./phaac.W6_15578.gnm2.ann1.LVZ1.phytozome_defline.txt.gz -d9e08f96d775cdcdc7eb7e0dc0bc9a4b ./phaac.W6_15578.gnm2.ann1.LVZ1.mrna_primary.fna.gz.fai -0dd0b9bc16c111527820fcbb76462d35 ./CHANGES.W6_15578.gnm2.ann1.LVZ1.txt +0dd0b9bc16c111527820fcbb76462d35 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/CHANGES.W6_15578.gnm2.ann1.LVZ1.txt +845cef73d0e0aaff82deb8315ea730a5 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/MANIFEST.W6_15578.gnm2.ann1.LVZ1.correspondence.yml +ddcf723e098d67b270175b0f6a6e8136 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/MANIFEST.W6_15578.gnm2.ann1.LVZ1.descriptions.yml +6207013d2a55641ec07b237d9715b718 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.cds_primary.fna.gz +17ba452ab5c89c7cf869ab578aa62204 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.cds_primary.fna.gz.fai +f70222f547b56e347be914ce6add9ec5 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.cds_primary.fna.gz.gzi +13f1be7ba1b9283ac4f20f23495452e9 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.cds.fna.gz +a3d7db7123bd5c73b59c243cb4f75968 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.cds.fna.gz.fai +77ad37f4695cc3e4ab3571b7a4418902 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.cds.fna.gz.gzi +a2a82bdc4fd7192c0c575127d5198561 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.gene_models_main.bed.gz +515eb473c5cd9db3212babd289e9b359 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.gene_models_main.bed.gz.tbi +41c728ddfad67ff81b8a96f35de0b81d Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.gene_models_main.gff3.gz +079b5a9ec3a3b5792bd5505db2de272a Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.gene_models_main.gff3.gz.tbi +8b41e2f133c57092b5a54a846f17c787 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.legfed_v1_0.M65K.gfa.tsv.gz +6029f6a3ad0271711225a817a273daf4 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.mrna_primary.fna.gz +d9e08f96d775cdcdc7eb7e0dc0bc9a4b Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.mrna_primary.fna.gz.fai +c303030818d8b82819620b1a2f4ffb58 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.mrna_primary.fna.gz.gzi +013dd27c1e1ce4e41fc65ce9a2cf6ff5 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.mrna.fna.gz +41a043ab81a72447b07ad903e515e500 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.mrna.fna.gz.fai +d10074b379afcb1200ba7facea377340 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.mrna.fna.gz.gzi +db1e1aeb898d4bc8f32b34d5a2b95641 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.phytozome_defline.txt.gz +2a6aa1b025af17e02c06ce6b40ab62de Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.protein_primary.faa.gz +d579eed7e8f339f0d0f35f6fdd9f9ca6 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.protein_primary.faa.gz.fai +74a7f251c7bda472d28fc37a37d39924 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.protein_primary.faa.gz.gzi +a07a8bf401307d2aac19b2477f38d140 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.protein.faa.gz +5de5ca5396d5c13260f97530a1cdb6f6 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.protein.faa.gz.fai +a9dce8862205301396d920384e46d6d8 Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/phaac.W6_15578.gnm2.ann1.LVZ1.protein.faa.gz.gzi +3e8df64c8cab64394879f6ed667e99db Phaseolus/acutifolius/annotations/W6_15578.gnm2.ann1.LVZ1/README.W6_15578.gnm2.ann1.LVZ1.yml diff --git a/Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/CHECKSUM.G27455.gnm1.ann1.JD7C.md5 b/Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/CHECKSUM.G27455.gnm1.ann1.JD7C.md5 index 1a3e1f86..61af6039 100644 --- a/Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/CHECKSUM.G27455.gnm1.ann1.JD7C.md5 +++ b/Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/CHECKSUM.G27455.gnm1.ann1.JD7C.md5 @@ -1,42 +1,39 @@ -748610f85bd8abe1838c1d33925a0ffe ./phalu.G27455.gnm1.ann1.JD7C.mrna.fna.gz.gzi -7f461cccca0d7753ca9601da60997654 ./phalu.G27455.gnm1.ann1.JD7C.mrna_primary.fna.gz -7c044d2acf6efd69221854c3ffaddf18 ./CHANGES.G27455.gnm1.ann1.JD7C.txt -8483abb1638c4c933ad855e000be660c ./phalu.G27455.gnm1.ann1.JD7C.cds.fna.gz.fai -ea84e4dee31e8e24d1cf1e81d9977921 ./phalu.G27455.gnm1.ann1.JD7C.gene_models_low_confidence.gff3.gz -6b6c1e3503b87383711856aa401dbe7b ./Plunatus_563_V1.annotation_info.txt -007f1cd8d07e748a7715507274047c15 ./phalu.G27455.gnm1.ann1.JD7C.protein_primary.faa.gz.fai -39675076b1528813f6b940d4804ccee2 ./phalu.G27455.gnm1.ann1.JD7C.mrna_primary.fna.gz.gzi -d2696ccb562e48adafea0451095e8846 ./phalu.G27455.gnm1.ann1.JD7C.cds_primary.fna.gz -44af65776c0c62699615e1f04ec21f08 ./MANIFEST.G27455.gnm1.ann1.JD7C.descriptions.yml -1c8d014559e2d99ecf9211d32f6a41a1 ./README.G27455.gnm1.ann1.JD7C.yml -48e6a924ee622bedf98f1616e0757d78 ./phalu.G27455.gnm1.ann1.JD7C.gene_models_low_confidence.gff3.gz.tbi -0c28d1ea0f392b7408ec3bc838e14776 ./phalu.G27455.gnm1.ann1.JD7C.legfed_v1_0.M65K.gfa.tsv.gz -21cd9054a9263343e975ab068e9ddc51 ./phalu.G27455.gnm1.ann1.JD7C.mrna_low_confidence.fna.gz -8048149010bc2fcc726c9bb6d35fb7ee ./phalu.G27455.gnm1.ann1.JD7C.iprscan_low_confidence.gff3.gz -155e407ce5226ab4c5a6a14d4d30c734 ./usage_policy.txt -6482772af78cbe7a8382fb0f6da88cd4 ./_h5ai.footers.html -4a3a6d723e516d6613596859d62db001 ./phalu.G27455.gnm1.ann1.JD7C.legfed_v1_0.M65K.pathway.tsv.gz -7bfb151d6b101e825f9a266aef26fb03 ./MANIFEST.G27455.gnm1.ann1.JD7C.correspondence.yml -e05550ea523d7e22112ab475aaf2b0a8 ./phalu.G27455.gnm1.ann1.JD7C.protein.faa.gz.fai -1a363759c0de1805d91c1911226f840b ./phalu.G27455.gnm1.ann1.JD7C.cds.bed.gz -065c5ea278409406c24b25e59692b473 ./phalu.G27455.gnm1.ann1.JD7C.cds_primary.fna.gz.gzi -095b1872866f8dc3c61b024723a8d3ec ./phalu.G27455.gnm1.ann1.JD7C.protein_low_confidence.faa.gz -28dfc5048fe2a4d0e98a55bdcfa52084 ./phalu.G27455.gnm1.ann1.JD7C.protein_primary.faa.gz -f82784a215a56513af421afc9d2d1302 ./busco/phalu.G27455.gnm1.ann1.JD7C.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.phalu.G27455.gnm1.ann1.JD7C.protein.faa.gz_busco.txt -46be661535dd9a6965fcd9086c8de948 ./busco/phalu.G27455.gnm1.ann1.JD7C.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.phalu.G27455.gnm1.ann1.JD7C.protein_primaryTranscript.faa.gz_busco.txt -2705f09517772912feafdf7ddf40ff67 ./phalu.G27455.gnm1.ann1.JD7C.cds_primary.fna.gz.fai -1816add33c357382927b270626def037 ./Plunatus_563_V1.defline.txt -c780744feecc011504a059d024f7e59b ./phalu.G27455.gnm1.ann1.JD7C.mrna.fna.gz -dab6d5bc0c5022448403ac1353bd0fa0 ./phalu.G27455.gnm1.ann1.JD7C.cds_low_confidence.fna.gz -ac51039422c5cc17ebe6a36d4f16f3e0 ./Plunatus_563_V1.lowConfidenceTranscripts.txt -f5782dfda9bef8e610f79b74c806ae87 ./phalu.G27455.gnm1.ann1.JD7C.protein.faa.gz.gzi -d681998d8a0ede607ba35eff5cd506db ./phalu.G27455.gnm1.ann1.JD7C.iprscan.gff3.gz -12886ebf2f6db7ac76b06d71c37bec58 ./phalu.G27455.gnm1.ann1.JD7C.gene_models_main.gff3.gz.tbi -aef393babcfe052d8b36deba85c9a3f8 ./phalu.G27455.gnm1.ann1.JD7C.cds.fna.gz -b52b9f2b37f93353b5e9c63ad0214a46 ./phalu.G27455.gnm1.ann1.JD7C.cds.bed.gz.tbi -530856f43da4894decb98601159607e1 ./phalu.G27455.gnm1.ann1.JD7C.mrna_primary.fna.gz.fai -d133bacd9fc495eef7266bf501a29b7a ./phalu.G27455.gnm1.ann1.JD7C.gene_models_main.gff3.gz -35f3912de5116ab41bbb6ac4f5eb5d00 ./phalu.G27455.gnm1.ann1.JD7C.protein.faa.gz -378540fbba86d36c3040203da182b8bd ./phalu.G27455.gnm1.ann1.JD7C.protein_primary.faa.gz.gzi -8c3563080f44406914ab2dc4cfc0c17c ./phalu.G27455.gnm1.ann1.JD7C.mrna.fna.gz.fai -19dfad7c99e297d4086f1f9c946d52c9 ./phalu.G27455.gnm1.ann1.JD7C.cds.fna.gz.gzi +6482772af78cbe7a8382fb0f6da88cd4 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/_h5ai.footers.html +7c044d2acf6efd69221854c3ffaddf18 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/CHANGES.G27455.gnm1.ann1.JD7C.txt +7bfb151d6b101e825f9a266aef26fb03 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/MANIFEST.G27455.gnm1.ann1.JD7C.correspondence.yml +44af65776c0c62699615e1f04ec21f08 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/MANIFEST.G27455.gnm1.ann1.JD7C.descriptions.yml +dab6d5bc0c5022448403ac1353bd0fa0 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.cds_low_confidence.fna.gz +d2696ccb562e48adafea0451095e8846 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.cds_primary.fna.gz +2705f09517772912feafdf7ddf40ff67 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.cds_primary.fna.gz.fai +065c5ea278409406c24b25e59692b473 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.cds_primary.fna.gz.gzi +aef393babcfe052d8b36deba85c9a3f8 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.cds.fna.gz +8483abb1638c4c933ad855e000be660c Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.cds.fna.gz.fai +19dfad7c99e297d4086f1f9c946d52c9 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.cds.fna.gz.gzi +ea84e4dee31e8e24d1cf1e81d9977921 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.gene_models_low_confidence.gff3.gz +48e6a924ee622bedf98f1616e0757d78 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.gene_models_low_confidence.gff3.gz.tbi +773bd6046fc8908689b39d0e149d139b Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.gene_models_main.bed.gz +694bdeddfb8c75c107046780e5a462b3 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.gene_models_main.bed.gz.tbi +d133bacd9fc495eef7266bf501a29b7a Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.gene_models_main.gff3.gz +12886ebf2f6db7ac76b06d71c37bec58 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.gene_models_main.gff3.gz.tbi +8048149010bc2fcc726c9bb6d35fb7ee Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.iprscan_low_confidence.gff3.gz +d681998d8a0ede607ba35eff5cd506db Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.iprscan.gff3.gz +0c28d1ea0f392b7408ec3bc838e14776 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.legfed_v1_0.M65K.gfa.tsv.gz +21cd9054a9263343e975ab068e9ddc51 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.mrna_low_confidence.fna.gz +7f461cccca0d7753ca9601da60997654 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.mrna_primary.fna.gz +530856f43da4894decb98601159607e1 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.mrna_primary.fna.gz.fai +39675076b1528813f6b940d4804ccee2 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.mrna_primary.fna.gz.gzi +c780744feecc011504a059d024f7e59b Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.mrna.fna.gz +8c3563080f44406914ab2dc4cfc0c17c Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.mrna.fna.gz.fai +748610f85bd8abe1838c1d33925a0ffe Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.mrna.fna.gz.gzi +095b1872866f8dc3c61b024723a8d3ec Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.protein_low_confidence.faa.gz +28dfc5048fe2a4d0e98a55bdcfa52084 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.protein_primary.faa.gz +007f1cd8d07e748a7715507274047c15 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.protein_primary.faa.gz.fai +378540fbba86d36c3040203da182b8bd Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.protein_primary.faa.gz.gzi +35f3912de5116ab41bbb6ac4f5eb5d00 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.protein.faa.gz +e05550ea523d7e22112ab475aaf2b0a8 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.protein.faa.gz.fai +f5782dfda9bef8e610f79b74c806ae87 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/phalu.G27455.gnm1.ann1.JD7C.protein.faa.gz.gzi +6b6c1e3503b87383711856aa401dbe7b Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/Plunatus_563_V1.annotation_info.txt +1816add33c357382927b270626def037 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/Plunatus_563_V1.defline.txt +ac51039422c5cc17ebe6a36d4f16f3e0 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/Plunatus_563_V1.lowConfidenceTranscripts.txt +42f42fdd96f7d150366c6e6dfe06291a Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/README.G27455.gnm1.ann1.JD7C.yml +155e407ce5226ab4c5a6a14d4d30c734 Phaseolus/lunatus/annotations/G27455.gnm1.ann1.JD7C/usage_policy.txt diff --git a/Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/CHECKSUM.5-593.gnm1.ann1.3FBJ.md5 b/Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/CHECKSUM.5-593.gnm1.ann1.3FBJ.md5 index d934a511..2706b743 100644 --- a/Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/CHECKSUM.5-593.gnm1.ann1.3FBJ.md5 +++ b/Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/CHECKSUM.5-593.gnm1.ann1.3FBJ.md5 @@ -1,30 +1,30 @@ -6a3351b687663abf0745f03bdb64dc53 ./phavu.5-593.gnm1.ann1.3FBJ.cds.fna.gz.gzi -3aa6e24a227221e2cb181f560395a55a ./phavu.5-593.gnm1.ann1.3FBJ.mrna_primary.fna.gz.gzi -97a6a0ff6b260cd52665139c3f52571c ./phavu.5-593.gnm1.ann1.3FBJ.legfed_v1_0.M65K.gfa.tsv.gz -a7105e3536c2a7227c2315df9c2fd515 ./phavu.5-593.gnm1.ann1.3FBJ.protein.faa.gz -35ae901757156c292c88413c52c35f82 ./phavu.5-593.gnm1.ann1.3FBJ.protein.faa.gz.fai -ddfccfec4fbf16dcd7b0b988b3d290ef ./phavu.5-593.gnm1.ann1.3FBJ.iprscan.gff3.gz.tbi -2b4bb6a676279830639f281b294a862c ./MANIFEST.5-593.gnm1.ann1.3FBJ.correspondence.yml -c45fa8c905104d14736b926357c3cb02 ./phavu.5-593.gnm1.ann1.3FBJ.gene_models_main.gff3.gz.tbi -d2ea07ce1315752cdec3d38026235ca7 ./phavu.5-593.gnm1.ann1.3FBJ.mrna.fna.gz -3450af0a6233416080df8b9a80926fd3 ./phavu.5-593.gnm1.ann1.3FBJ.cds.bed.gz -916c49489fd89f010e060535fcb28ffc ./phavu.5-593.gnm1.ann1.3FBJ.protein_primary.faa.gz.fai -7b1224b020d18ddbf78fb301ef0c6690 ./phavu.5-593.gnm1.ann1.3FBJ.cds_primary.fna.gz -0c40790c5db222450c0e81802e5b8296 ./phavu.5-593.gnm1.ann1.3FBJ.cds.bed.gz.tbi -da5ec2ce51270472e699541e5b0dc0b4 ./phavu.5-593.gnm1.ann1.3FBJ.protein_primary.faa.gz -50b63868d0e3c1152295558f91504b5a ./phavu.5-593.gnm1.ann1.3FBJ.cds_primary.fna.gz.gzi -a5d3a735014037af3c66d183fffb66cb ./original_Phytozome_DataReleasePolicy.txt -a20f8141013f90c6d2fbc56b34300874 ./phavu.5-593.gnm1.ann1.3FBJ.mrna.fna.gz.gzi -a9ca0eda9fc805e9541a9b9923db2613 ./phavu.5-593.gnm1.ann1.3FBJ.mrna.fna.gz.fai -f92274a96aa89635e8d01c383c7da53d ./phavu.5-593.gnm1.ann1.3FBJ.mrna_primary.fna.gz -bb06118eaee647e02794a80041c7a44e ./phavu.5-593.gnm1.ann1.3FBJ.gene_models_main.gff3.gz -424f0812ab3ee668647ab9f8362dfe4e ./README.5-593.gnm1.ann1.3FBJ.yml -8f2e1432091e74638410c79e2cd05439 ./phavu.5-593.gnm1.ann1.3FBJ.cds_primary.fna.gz.fai -a5667f1f057276bfbd9aa18228b98f6c ./phavu.5-593.gnm1.ann1.3FBJ.protein_primary.faa.gz.gzi -2a2edd5b898f362887b6efcbeee663a0 ./phavu.5-593.gnm1.ann1.3FBJ.iprscan.gff3.gz -a7157cf57f712939e79a81a6c3ac78be ./MANIFEST.5-593.gnm1.ann1.3FBJ.descriptions.yml -375da59750d3fe100be2d948eb82c0e8 ./phavu.5-593.gnm1.ann1.3FBJ.protein.faa.gz.gzi -2871cbd0097a736188d493f171609cf8 ./phavu.5-593.gnm1.ann1.3FBJ.cds.fna.gz.fai -dbdabbddf1e4f7af922b94f4216cc5a0 ./CHANGES.5-593.gnm1.1P7P.txt -fec7e478f2fbf77ea8322b07d81bd3f9 ./phavu.5-593.gnm1.ann1.3FBJ.cds.fna.gz -4a44b2febb56e52e92a0f14d6f9df50f ./phavu.5-593.gnm1.ann1.3FBJ.mrna_primary.fna.gz.fai +dbdabbddf1e4f7af922b94f4216cc5a0 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/CHANGES.5-593.gnm1.1P7P.txt +2b4bb6a676279830639f281b294a862c Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/MANIFEST.5-593.gnm1.ann1.3FBJ.correspondence.yml +a7157cf57f712939e79a81a6c3ac78be Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/MANIFEST.5-593.gnm1.ann1.3FBJ.descriptions.yml +a5d3a735014037af3c66d183fffb66cb Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/original_Phytozome_DataReleasePolicy.txt +7b1224b020d18ddbf78fb301ef0c6690 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.cds_primary.fna.gz +8f2e1432091e74638410c79e2cd05439 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.cds_primary.fna.gz.fai +50b63868d0e3c1152295558f91504b5a Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.cds_primary.fna.gz.gzi +fec7e478f2fbf77ea8322b07d81bd3f9 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.cds.fna.gz +2871cbd0097a736188d493f171609cf8 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.cds.fna.gz.fai +6a3351b687663abf0745f03bdb64dc53 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.cds.fna.gz.gzi +ecc10992e521a6a195900ec0d1fdb4c9 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.gene_models_main.bed.gz +87d54c1e5867613f77356d477b0b2df2 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.gene_models_main.bed.gz.tbi +bb06118eaee647e02794a80041c7a44e Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.gene_models_main.gff3.gz +c45fa8c905104d14736b926357c3cb02 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.gene_models_main.gff3.gz.tbi +2a2edd5b898f362887b6efcbeee663a0 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.iprscan.gff3.gz +ddfccfec4fbf16dcd7b0b988b3d290ef Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.iprscan.gff3.gz.tbi +97a6a0ff6b260cd52665139c3f52571c Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.legfed_v1_0.M65K.gfa.tsv.gz +f92274a96aa89635e8d01c383c7da53d Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.mrna_primary.fna.gz +4a44b2febb56e52e92a0f14d6f9df50f Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.mrna_primary.fna.gz.fai +3aa6e24a227221e2cb181f560395a55a Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.mrna_primary.fna.gz.gzi +d2ea07ce1315752cdec3d38026235ca7 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.mrna.fna.gz +a9ca0eda9fc805e9541a9b9923db2613 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.mrna.fna.gz.fai +a20f8141013f90c6d2fbc56b34300874 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.mrna.fna.gz.gzi +da5ec2ce51270472e699541e5b0dc0b4 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.protein_primary.faa.gz +916c49489fd89f010e060535fcb28ffc Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.protein_primary.faa.gz.fai +a5667f1f057276bfbd9aa18228b98f6c Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.protein_primary.faa.gz.gzi +a7105e3536c2a7227c2315df9c2fd515 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.protein.faa.gz +35ae901757156c292c88413c52c35f82 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.protein.faa.gz.fai +375da59750d3fe100be2d948eb82c0e8 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/phavu.5-593.gnm1.ann1.3FBJ.protein.faa.gz.gzi +5379aba8c69b56cdcf3031bc83954261 Phaseolus/vulgaris/annotations/5-593.gnm1.ann1.3FBJ/README.5-593.gnm1.ann1.3FBJ.yml diff --git a/Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/CHECKSUM.G19833.gnm1.ann1.pScz.md5 b/Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/CHECKSUM.G19833.gnm1.ann1.pScz.md5 index 73a0b3f0..36da827f 100644 --- a/Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/CHECKSUM.G19833.gnm1.ann1.pScz.md5 +++ b/Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/CHECKSUM.G19833.gnm1.ann1.pScz.md5 @@ -1,32 +1,29 @@ -0b5e0c64fbbb45a6e27e52fd33ccedce ./phavu.G19833.gnm1.ann1.pScz.mrna_primary.fna.gz.gzi -1eb2088a0d01d4499e7853043044501a ./CHANGES.G19833.gnm1.ann1.pScz.txt -0c2befca6240848309b182ae0a6d2d34 ./phavu.G19833.gnm1.ann1.pScz.cds.bed.gz -a74f905f250867cdf125616ca47c8af3 ./README.G19833.gnm1.ann1.pScz.yml -9747c9560bb9b88e60ba84414e090e54 ./phavu.G19833.gnm1.ann1.pScz.protein_primary.faa.gz.gzi -58333163193b62c205633f58e8524a7f ./phavu.G19833.gnm1.ann1.pScz.protein.faa.gz.fai -577d442160c381b274dc6b12b3cfcef9 ./phavu.G19833.gnm1.ann1.pScz.protein.faa.gz -993221dce865d8bafa2642d81a2f53ee ./phavu.G19833.gnm1.ann1.pScz.mrna.fna.gz.gzi -b0822d64f51b72f07e4676e80fb92ee4 ./phavu.G19833.gnm1.ann1.pScz.cds_primary.fna.gz.fai -7d91df28d1fc94211f404388199f554a ./phavu.G19833.gnm1.ann1.pScz.cds.fna.gz.gzi -e6054ce47d7e4ec19f2f11064e6fde03 ./phavu.G19833.gnm1.ann1.pScz.legfed_v1_0.M65K.gfa.tsv.gz -782c58345fb5caf6816a67c8e1314098 ./phavu.G19833.gnm1.ann1.pScz.cds_primary.fna.gz -461eef48a307cc73166986f82b81f5e2 ./MANIFEST.G19833.gnm1.ann1.pScz.descriptions.yml -33368f3b4110ee8ea54c33fed1c912c2 ./phavu.G19833.gnm1.ann1.pScz.mrna_primary.fna.gz -aab5385eeb8cf6ad07e03a726456ca1b ./busco/phavu.G19833.gnm1.ann1.pScz.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.phavu.G19833.gnm1.ann1.pScz.protein_primaryTranscript.faa.gz_busco.txt -9e3f92e89a332397e0a63b3c44944de8 ./busco/phavu.G19833.gnm1.ann1.pScz.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.phavu.G19833.gnm1.ann1.pScz.protein.faa.gz_busco.txt -9c0d268d78ad8189ac61fd196863697b ./phavu.G19833.gnm1.ann1.pScz.cds.bed.gz.tbi -441560cae5c055dc8d7c1e169890efac ./phavu.G19833.gnm1.ann1.pScz.pathway.tsv.gz -63d851659c979b75f2783de31cfa767f ./phavu.G19833.gnm1.ann1.pScz.gene_models_main.gff3.gz.tbi -3cb85c781572f1b9e153212c659cc3f6 ./phavu.G19833.gnm1.ann1.pScz.gene_models_main.gff3.gz -e21a4c861df88b16456a72c85d1cc4c5 ./phavu.G19833.gnm1.ann1.pScz.mrna.fna.gz -9760f888c13a8c80a4a5c1151ec87a9a ./phavu.G19833.gnm1.ann1.pScz.repeatmasking.gff3.gz -64974fa3e8f3d4f85e423107cb76052b ./phavu.G19833.gnm1.ann1.pScz.protein_primary.faa.gz -330790414daf35ac6ef08fdc46522acc ./phavu.G19833.gnm1.ann1.pScz.cds_primary.fna.gz.gzi -567c900ad73b512a5320a6131867bd0f ./phavu.G19833.gnm1.ann1.pScz.cds.fna.gz.fai -672b182214734364771934967598e47d ./MANIFEST.G19833.gnm1.ann1.pScz.correspondence.yml -8903e397e1c4477a93f1a2246a4ac6bb ./phavu.G19833.gnm1.ann1.pScz.cds.fna.gz -52760bd02854d4ce2c9de6c4402a4956 ./phavu.G19833.gnm1.ann1.pScz.mrna.fna.gz.fai -7b8c2a8af401525b4f710ecb7b5e949e ./phavu.G19833.gnm1.ann1.pScz.info_annot.txt.gz -69b187a303cdcfa4296820c7cb9005a9 ./phavu.G19833.gnm1.ann1.pScz.protein_primary.faa.gz.fai -73715bf05ec91f5d4ca78572614039ce ./phavu.G19833.gnm1.ann1.pScz.protein.faa.gz.gzi -b98880a9f269fd4ce2c7380734e02520 ./phavu.G19833.gnm1.ann1.pScz.mrna_primary.fna.gz.fai +1eb2088a0d01d4499e7853043044501a Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/CHANGES.G19833.gnm1.ann1.pScz.txt +672b182214734364771934967598e47d Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/MANIFEST.G19833.gnm1.ann1.pScz.correspondence.yml +461eef48a307cc73166986f82b81f5e2 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/MANIFEST.G19833.gnm1.ann1.pScz.descriptions.yml +782c58345fb5caf6816a67c8e1314098 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.cds_primary.fna.gz +b0822d64f51b72f07e4676e80fb92ee4 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.cds_primary.fna.gz.fai +330790414daf35ac6ef08fdc46522acc Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.cds_primary.fna.gz.gzi +8903e397e1c4477a93f1a2246a4ac6bb Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.cds.fna.gz +567c900ad73b512a5320a6131867bd0f Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.cds.fna.gz.fai +7d91df28d1fc94211f404388199f554a Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.cds.fna.gz.gzi +9a6eac287b0a21d034394e350eee3ebe Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.gene_models_main.bed.gz +3a37e03283ec3350f1dd48722d28e65e Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.gene_models_main.bed.gz.tbi +3cb85c781572f1b9e153212c659cc3f6 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.gene_models_main.gff3.gz +63d851659c979b75f2783de31cfa767f Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.gene_models_main.gff3.gz.tbi +7b8c2a8af401525b4f710ecb7b5e949e Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.info_annot.txt.gz +e6054ce47d7e4ec19f2f11064e6fde03 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.legfed_v1_0.M65K.gfa.tsv.gz +33368f3b4110ee8ea54c33fed1c912c2 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.mrna_primary.fna.gz +b98880a9f269fd4ce2c7380734e02520 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.mrna_primary.fna.gz.fai +0b5e0c64fbbb45a6e27e52fd33ccedce Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.mrna_primary.fna.gz.gzi +e21a4c861df88b16456a72c85d1cc4c5 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.mrna.fna.gz +52760bd02854d4ce2c9de6c4402a4956 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.mrna.fna.gz.fai +993221dce865d8bafa2642d81a2f53ee Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.mrna.fna.gz.gzi +64974fa3e8f3d4f85e423107cb76052b Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.protein_primary.faa.gz +69b187a303cdcfa4296820c7cb9005a9 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.protein_primary.faa.gz.fai +9747c9560bb9b88e60ba84414e090e54 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.protein_primary.faa.gz.gzi +577d442160c381b274dc6b12b3cfcef9 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.protein.faa.gz +58333163193b62c205633f58e8524a7f Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.protein.faa.gz.fai +73715bf05ec91f5d4ca78572614039ce Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.protein.faa.gz.gzi +9760f888c13a8c80a4a5c1151ec87a9a Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/phavu.G19833.gnm1.ann1.pScz.repeatmasking.gff3.gz +a74f905f250867cdf125616ca47c8af3 Phaseolus/vulgaris/annotations/G19833.gnm1.ann1.pScz/README.G19833.gnm1.ann1.pScz.yml diff --git a/Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/CHECKSUM.G19833.gnm2.ann1.PB8d.md5 b/Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/CHECKSUM.G19833.gnm2.ann1.PB8d.md5 index 3d95b89a..a5498de1 100644 --- a/Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/CHECKSUM.G19833.gnm2.ann1.PB8d.md5 +++ b/Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/CHECKSUM.G19833.gnm2.ann1.PB8d.md5 @@ -1,32 +1,29 @@ -2757c2341d49764888e8c7f4a2075d92 ./phavu.G19833.gnm2.ann1.PB8d.cds.fna.gz -974ae2a2c3fdf82c54bcb709ed5dce70 ./phavu.G19833.gnm2.ann1.PB8d.repeatmasking.gff3.gz -b00fbdbe691675dff782d862c93686e0 ./phavu.G19833.gnm2.ann1.PB8d.mrna.fna.gz.gzi -9f4a917ab7f706f470c442544a03b8c9 ./README.G19833.gnm2.ann1.PB8d.yml -62ddbb5691dee4843b632b5a702c9b47 ./phavu.G19833.gnm2.ann1.PB8d.cds.fna.gz.fai -f72f9f4d9876c2e4c3acddd95d9f7e83 ./phavu.G19833.gnm2.ann1.PB8d.gene_models_main.gff3.gz -c025abe14cbea1fd412a66076e7aeee5 ./phavu.G19833.gnm2.ann1.PB8d.legfed_v1_0.M65K.gfa.tsv.gz -30d4cc9846b8717f24d3d8e6466d6769 ./phavu.G19833.gnm2.ann1.PB8d.protein_primary.faa.gz.gzi -3d0a9cd6ee5572c17221086a9cc79fa8 ./phavu.G19833.gnm2.ann1.PB8d.mrna_primary.fna.gz.fai -90bd23efd9b1474686e6e6c4fa072ba3 ./phavu.G19833.gnm2.ann1.PB8d.mrna.fna.gz -f17d5463727ec4ea3cfd5e2713bbf4a4 ./phavu.G19833.gnm2.ann1.PB8d.protein.faa.gz.gzi -e3ebff3a22ee769dba8b8ddad72d5318 ./phavu.G19833.gnm2.ann1.PB8d.cds_primary.fna.gz.fai -dc437b6ca0cf8c4d998d21f95b18e297 ./phavu.G19833.gnm2.ann1.PB8d.gene_models_main.gff3.gz.tbi -da23aafaeb1800194f72b20935f3055a ./phavu.G19833.gnm2.ann1.PB8d.protein_primary.faa.gz -770f2477477b3f0a466a8f540ff549bd ./phavu.G19833.gnm2.ann1.PB8d.protein.faa.gz.fai -f2296231c8a6d3336d4a3e6acebc197d ./phavu.G19833.gnm2.ann1.PB8d.cds_primary.fna.gz.gzi -9cec940150d086928d3473848600980d ./phavu.G19833.gnm2.ann1.PB8d.info_annot.txt.gz -dfa3627f0f931e5a06142512bc34bda6 ./phavu.G19833.gnm2.ann1.PB8d.synonym.txt.gz -c2e10b9ede2fb53eb34f2d3bb75c8e2f ./phavu.G19833.gnm2.ann1.PB8d.pathway.tsv.gz -3b16c25aca468655ffb04b990b027b6b ./phavu.G19833.gnm2.ann1.PB8d.cds.bed.gz.tbi -4ae96ef9de086bd77ba3b4288d77cbc1 ./phavu.G19833.gnm2.ann1.PB8d.protein_primary.faa.gz.fai -abfdac07c742a15baa40f8a30a6c8a36 ./phavu.G19833.gnm2.ann1.PB8d.mrna_primary.fna.gz.gzi -0257e774836ab2c727f3e52aadeae897 ./CHANGES.G19833.gnm2.ann1.PB8d.txt -f901bf81fc44619b86f638d9a8175a72 ./phavu.G19833.gnm2.ann1.PB8d.cds.bed.gz -8b1106f57119445e44084d6de66a6a3b ./phavu.G19833.gnm2.ann1.PB8d.cds_primary.fna.gz -61feb1a767776e066d2ad9aef8bae063 ./phavu.G19833.gnm2.ann1.PB8d.locus_mrna_name_map.txt.gz -b03e83f9264eb5629f5e6db962baa63d ./phavu.G19833.gnm2.ann1.PB8d.mrna.fna.gz.fai -e1c01ab9399d71e598b572d5cdd7a8e3 ./phavu.G19833.gnm2.ann1.PB8d.cds.fna.gz.gzi -cd102eb978842fa5f6c5924dc9d392ac ./busco/phavu.G19833.gnm2.ann1.PB8d.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.phavu.G19833.gnm2.ann1.PB8d.protein.faa.gz_busco.txt -a7f01c6d08f61724469596f028767817 ./busco/phavu.G19833.gnm2.ann1.PB8d.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.phavu.G19833.gnm2.ann1.PB8d.protein_primaryTranscript.faa.gz_busco.txt -a9be824ab54bd6fd5551ddc5e96f4dcc ./phavu.G19833.gnm2.ann1.PB8d.mrna_primary.fna.gz -6cdff267a41da030b1d4f4c9a3ca9bff ./phavu.G19833.gnm2.ann1.PB8d.protein.faa.gz +0257e774836ab2c727f3e52aadeae897 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/CHANGES.G19833.gnm2.ann1.PB8d.txt +8b1106f57119445e44084d6de66a6a3b Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.cds_primary.fna.gz +e3ebff3a22ee769dba8b8ddad72d5318 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.cds_primary.fna.gz.fai +f2296231c8a6d3336d4a3e6acebc197d Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.cds_primary.fna.gz.gzi +2757c2341d49764888e8c7f4a2075d92 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.cds.fna.gz +62ddbb5691dee4843b632b5a702c9b47 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.cds.fna.gz.fai +e1c01ab9399d71e598b572d5cdd7a8e3 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.cds.fna.gz.gzi +2c33e64f150c5fdead67a6e5d21147c7 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.gene_models_main.bed.gz +1b79e6e7641d6359ed3086c1b995a18c Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.gene_models_main.bed.gz.tbi +f72f9f4d9876c2e4c3acddd95d9f7e83 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.gene_models_main.gff3.gz +dc437b6ca0cf8c4d998d21f95b18e297 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.gene_models_main.gff3.gz.tbi +9cec940150d086928d3473848600980d Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.info_annot.txt.gz +c025abe14cbea1fd412a66076e7aeee5 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.legfed_v1_0.M65K.gfa.tsv.gz +61feb1a767776e066d2ad9aef8bae063 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.locus_mrna_name_map.txt.gz +a9be824ab54bd6fd5551ddc5e96f4dcc Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.mrna_primary.fna.gz +3d0a9cd6ee5572c17221086a9cc79fa8 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.mrna_primary.fna.gz.fai +abfdac07c742a15baa40f8a30a6c8a36 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.mrna_primary.fna.gz.gzi +90bd23efd9b1474686e6e6c4fa072ba3 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.mrna.fna.gz +b03e83f9264eb5629f5e6db962baa63d Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.mrna.fna.gz.fai +b00fbdbe691675dff782d862c93686e0 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.mrna.fna.gz.gzi +da23aafaeb1800194f72b20935f3055a Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.protein_primary.faa.gz +4ae96ef9de086bd77ba3b4288d77cbc1 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.protein_primary.faa.gz.fai +30d4cc9846b8717f24d3d8e6466d6769 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.protein_primary.faa.gz.gzi +6cdff267a41da030b1d4f4c9a3ca9bff Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.protein.faa.gz +770f2477477b3f0a466a8f540ff549bd Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.protein.faa.gz.fai +f17d5463727ec4ea3cfd5e2713bbf4a4 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.protein.faa.gz.gzi +974ae2a2c3fdf82c54bcb709ed5dce70 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.repeatmasking.gff3.gz +dfa3627f0f931e5a06142512bc34bda6 Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/phavu.G19833.gnm2.ann1.PB8d.synonym.txt.gz +ecc268cfbf7ce0121f3ca3d55c0877eb Phaseolus/vulgaris/annotations/G19833.gnm2.ann1.PB8d/README.G19833.gnm2.ann1.PB8d.yml diff --git a/Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/CHECKSUM.LaborOvalle.gnm1.ann1.L1DY.md5 b/Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/CHECKSUM.LaborOvalle.gnm1.ann1.L1DY.md5 index 0ba1e74c..00eabf79 100644 --- a/Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/CHECKSUM.LaborOvalle.gnm1.ann1.L1DY.md5 +++ b/Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/CHECKSUM.LaborOvalle.gnm1.ann1.L1DY.md5 @@ -1,29 +1,29 @@ -f9529251cf4ae0fc8d7c48571a05dc6a ./phavu.LaborOvalle.gnm1.ann1.L1DY.cds_primary.fna.gz.fai -3aafea0b6ada0b122616633e0f71a758 ./MANIFEST.LaborOvalle.gnm1.ann1.L1DY.descriptions.yml -d53d154da62385594d9e206cc0c6bf98 ./phavu.LaborOvalle.gnm1.ann1.L1DY.protein_primary.faa.gz.fai -faa41c9ed288123d28087159a45d69e0 ./phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.gff3.gz.tbi -72c42bc183d0a01d490764bf8fdca170 ./phavu.LaborOvalle.gnm1.ann1.L1DY.cds.bed.gz.tbi -e076389bd2f8b147e66125f32cebb3d2 ./phavu.LaborOvalle.gnm1.ann1.L1DY.mrna.fna.gz.fai -7c449361b5b9f6f4f4db34b4ccb249d8 ./CHANGES.LaborOvalle.gnm1.ann1.L1DY.txt -6c594eedd9eb270da63216dc71702ba0 ./README.LaborOvalle.gnm1.ann1.L1DY.yml -8bba39126ab0b4f1ef15fa7a55676014 ./phavu.LaborOvalle.gnm1.ann1.L1DY.mrna_primary.fna.gz -3c01676bed15ec443c5e6ad20b30a5bb ./phavu.LaborOvalle.gnm1.ann1.L1DY.cds.fna.gz -8763b477fbc00a864f20b75dcb13bd5f ./phavu.LaborOvalle.gnm1.ann1.L1DY.mrna_primary.fna.gz.fai -e32a89fcf2826e795bdeba34a15b35a2 ./phavu.LaborOvalle.gnm1.ann1.L1DY.cds.fna.gz.gzi -86ab6439f07ab05b2e8d4152b1020dff ./phavu.LaborOvalle.gnm1.ann1.L1DY.protein.faa.gz -dd82c03bcc083faff88b9e9cfed6ce36 ./phavu.LaborOvalle.gnm1.ann1.L1DY.protein.faa.gz.gzi -b0740e287c4f6644ff305aa6c87a9afb ./original_Phytozome_DataReleasePolicy.txt -c92fe5411c977f8d3ce1a7a9b82ecaf3 ./phavu.LaborOvalle.gnm1.ann1.L1DY.protein.faa.gz.fai -de57a49acd28b7f3adecdd497890bb4f ./phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.gff3.gz -4f9aa6a7366e9691e69ff9461050f217 ./phavu.LaborOvalle.gnm1.ann1.L1DY.mrna.fna.gz -d685230cb76620557a1071ee7b2c8dad ./phavu.LaborOvalle.gnm1.ann1.L1DY.mrna_primary.fna.gz.gzi -1c4bce72a9cd018fb335368cb130fec5 ./phavu.LaborOvalle.gnm1.ann1.L1DY.cds.fna.gz.fai -9dc0ecd06a56fc6fe17078c14843f325 ./phavu.LaborOvalle.gnm1.ann1.L1DY.cds.bed.gz -3404929b93e4a8e9bdd22b4079ef7d0c ./phavu.LaborOvalle.gnm1.ann1.L1DY.mrna.fna.gz.gzi -60a11e6612b87175d171a4f1b6d494f8 ./phavu.LaborOvalle.gnm1.ann1.L1DY.legfed_v1_0.M65K.gfa.tsv.gz -751caec4f6e9c390bac801ffb29c3d2c ./phavu.LaborOvalle.gnm1.ann1.L1DY.protein_primary.faa.gz.gzi -6aaba6b1e8729345290f42dcef25f996 ./phavu.LaborOvalle.gnm1.ann1.L1DY.cds_primary.fna.gz -142a6153fb7d9b2f9a3c9de805680f9c ./MANIFEST.LaborOvalle.gnm1.ann1.L1DY.correspondence.yml -026440e158b89cf6be677a6f08d9e72e ./phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.gcv_genes.gff3.gz -cc95c9b545fe6ca63da73f5beb72e0a0 ./phavu.LaborOvalle.gnm1.ann1.L1DY.protein_primary.faa.gz -c7011e9e64911f411293c04492517e82 ./phavu.LaborOvalle.gnm1.ann1.L1DY.cds_primary.fna.gz.gzi +7c449361b5b9f6f4f4db34b4ccb249d8 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/CHANGES.LaborOvalle.gnm1.ann1.L1DY.txt +142a6153fb7d9b2f9a3c9de805680f9c Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/MANIFEST.LaborOvalle.gnm1.ann1.L1DY.correspondence.yml +3aafea0b6ada0b122616633e0f71a758 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/MANIFEST.LaborOvalle.gnm1.ann1.L1DY.descriptions.yml +b0740e287c4f6644ff305aa6c87a9afb Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/original_Phytozome_DataReleasePolicy.txt +6aaba6b1e8729345290f42dcef25f996 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.cds_primary.fna.gz +f9529251cf4ae0fc8d7c48571a05dc6a Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.cds_primary.fna.gz.fai +c7011e9e64911f411293c04492517e82 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.cds_primary.fna.gz.gzi +3c01676bed15ec443c5e6ad20b30a5bb Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.cds.fna.gz +1c4bce72a9cd018fb335368cb130fec5 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.cds.fna.gz.fai +e32a89fcf2826e795bdeba34a15b35a2 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.cds.fna.gz.gzi +86d3e3916c05676399a1a9e1cd0927d3 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.bed.gz +787f0b06bef5b84a8576503706ea776a Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.bed.gz.tbi +026440e158b89cf6be677a6f08d9e72e Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.gcv_genes.gff3.gz +de57a49acd28b7f3adecdd497890bb4f Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.gff3.gz +faa41c9ed288123d28087159a45d69e0 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.gene_models_main.gff3.gz.tbi +60a11e6612b87175d171a4f1b6d494f8 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.legfed_v1_0.M65K.gfa.tsv.gz +8bba39126ab0b4f1ef15fa7a55676014 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.mrna_primary.fna.gz +8763b477fbc00a864f20b75dcb13bd5f Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.mrna_primary.fna.gz.fai +d685230cb76620557a1071ee7b2c8dad Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.mrna_primary.fna.gz.gzi +4f9aa6a7366e9691e69ff9461050f217 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.mrna.fna.gz +e076389bd2f8b147e66125f32cebb3d2 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.mrna.fna.gz.fai +3404929b93e4a8e9bdd22b4079ef7d0c Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.mrna.fna.gz.gzi +cc95c9b545fe6ca63da73f5beb72e0a0 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.protein_primary.faa.gz +d53d154da62385594d9e206cc0c6bf98 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.protein_primary.faa.gz.fai +751caec4f6e9c390bac801ffb29c3d2c Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.protein_primary.faa.gz.gzi +86ab6439f07ab05b2e8d4152b1020dff Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.protein.faa.gz +c92fe5411c977f8d3ce1a7a9b82ecaf3 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.protein.faa.gz.fai +dd82c03bcc083faff88b9e9cfed6ce36 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/phavu.LaborOvalle.gnm1.ann1.L1DY.protein.faa.gz.gzi +6c594eedd9eb270da63216dc71702ba0 Phaseolus/vulgaris/annotations/LaborOvalle.gnm1.ann1.L1DY/README.LaborOvalle.gnm1.ann1.L1DY.yml diff --git a/Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/CHECKSUM.UI111.gnm1.ann1.8L4N.md5 b/Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/CHECKSUM.UI111.gnm1.ann1.8L4N.md5 index 8f46a031..21077444 100644 --- a/Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/CHECKSUM.UI111.gnm1.ann1.8L4N.md5 +++ b/Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/CHECKSUM.UI111.gnm1.ann1.8L4N.md5 @@ -1,34 +1,31 @@ -f8791ca27d9ce9d3a5a6da625edab518 ./phavu.UI111.gnm1.ann1.8L4N.cds.fna.gz.fai -7eaa489ae48f66bd71b1225f495fe6f1 ./phavu.UI111.gnm1.ann1.8L4N.protein.faa.gz.fai -40342155bf09c562b502d67fcb4bf81b ./phavu.UI111.gnm1.ann1.8L4N.protein_primary.faa.gz -c135b479d4730bec02fddd426b700f4a ./phavu.UI111.gnm1.ann1.8L4N.legfed_v1_0.M65K.gfa.tsv.gz -1dc3611193e85be580edb436567c2e79 ./phavu.UI111.gnm1.ann1.8L4N.cds_primary.fna.gz.gzi -e4b8949e03f22bc5cd8d2d9b79c53cbe ./phavu.UI111.gnm1.ann1.8L4N.gene_models_main.gff3.gz -d8ad8ceafcd5599687480384302cd95e ./README.UI111.gnm1.ann1.8L4N.yml -318656c9135d61d0d5b3895c9420c418 ./MANIFEST.UI111.gnm1.ann1.8L4N.correspondence.yml -57e57dafa317b54c2f6088cefe78b738 ./phavu.UI111.gnm1.ann1.8L4N.mrna.fna.gz.fai -1ae151abd2fd579e2c3ed5313dfe12d5 ./phavu.UI111.gnm1.ann1.8L4N.cds_primary.fna.gz -7358c0fbe2591aa5f83b5f70b8bb17ae ./phavu.UI111.gnm1.ann1.8L4N.mrna_primary.fna.gz.gzi -677e83bdf034857f376413352540fa05 ./phavu.UI111.gnm1.ann1.8L4N.cds.fna.gz -382a75ec6786a31ff4b5cb7e577783cd ./phavu.UI111.gnm1.ann1.8L4N.gene_models_main.gff3.gz.tbi -8d9998b3485699413fe48252bdafe0bc ./CHANGES.UI111.gnm1.ann1.8L4N.txt -0eae142a5e73dfa43cd6750eaa5d779c ./phavu.UI111.gnm1.ann1.8L4N.protein_primary.faa.gz.gzi -559bf671b9911ddaaad97124f23e494f ./phavu.UI111.gnm1.ann1.8L4N.cds.bed.gz -1b97f74f6979f67b1c47412d2af2c859 ./phavu.UI111.gnm1.ann1.8L4N.protein_primary.faa.gz.fai -0ac0828ac3d20ab2851cc97c6bead790 ./MANIFEST.UI111.gnm1.ann1.8L4N.descriptions.yml -1cd9603f9dda6c2070654fdd41462aac ./phavu.UI111.gnm1.ann1.8L4N.info_defline.txt.gz -8d3730169b13e22f88e896e8ccdeb451 ./phavu.UI111.gnm1.ann1.8L4N.mrna.fna.gz.gzi -65b4f3dde42c6ba08c9ce43a9299ad9b ./phavu.UI111.gnm1.ann1.8L4N.mrna.fna.gz -92a193c93884c84b5393417bc925ba68 ./phavu.UI111.gnm1.ann1.8L4N.cds.bed.gz.tbi -775527cf27bca4790166b107b6902a29 ./phavu.UI111.gnm1.ann1.8L4N.repeatmasked_assembly_v1.0.gff3.gz -6866f88ff81b948d060ebadde1debbbc ./phavu.UI111.gnm1.ann1.8L4N.mrna_primary.fna.gz.fai -3861b3dc1662e1535343301cbef42e29 ./busco/phavu.UI111.gnm1.ann1.8L4N.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.phavu.UI111.gnm1.ann1.8L4N.protein.faa.gz_busco.txt -ff1d890d1614d46c320e11b8fd92af2c ./busco/phavu.UI111.gnm1.ann1.8L4N.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.phavu.UI111.gnm1.ann1.8L4N.protein_primaryTranscript.faa.gz_busco.txt -94e1cc5507ab1abc7d4da9b3c5080026 ./phavu.UI111.gnm1.ann1.8L4N.info_annot.txt.gz -646eb18ab9c891862fb500e85801863b ./phavu.UI111.gnm1.ann1.8L4N.legfed_v1_0.M65K.pathway.tsv.gz -2bc015bc2e463122ea42927dc5c2c7ab ./phavu.UI111.gnm1.ann1.8L4N.cds_primary.fna.gz.fai -178202f13d7baee66c4ad5238c79e74d ./phavu.UI111.gnm1.ann1.8L4N.mrna_primary.fna.gz -fc503c6c29c999c911f02e72dbb55ce8 ./phavu.UI111.gnm1.ann1.8L4N.protein.faa.gz.gzi -3e35c8a30027dade6992f0c093c9a419 ./phavu.UI111.gnm1.ann1.8L4N.protein.faa.gz -6e7f9595ec02f4e4237d2dfa760c6193 ./phavu.UI111.gnm1.ann1.8L4N.gene_models_main.gcv_chado.gff3.gz -9e0aec101d3e60bcb27c99ba811e5b18 ./phavu.UI111.gnm1.ann1.8L4N.cds.fna.gz.gzi +8d9998b3485699413fe48252bdafe0bc Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/CHANGES.UI111.gnm1.ann1.8L4N.txt +318656c9135d61d0d5b3895c9420c418 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/MANIFEST.UI111.gnm1.ann1.8L4N.correspondence.yml +0ac0828ac3d20ab2851cc97c6bead790 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/MANIFEST.UI111.gnm1.ann1.8L4N.descriptions.yml +1ae151abd2fd579e2c3ed5313dfe12d5 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.cds_primary.fna.gz +2bc015bc2e463122ea42927dc5c2c7ab Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.cds_primary.fna.gz.fai +1dc3611193e85be580edb436567c2e79 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.cds_primary.fna.gz.gzi +677e83bdf034857f376413352540fa05 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.cds.fna.gz +f8791ca27d9ce9d3a5a6da625edab518 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.cds.fna.gz.fai +9e0aec101d3e60bcb27c99ba811e5b18 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.cds.fna.gz.gzi +9a52c354954991b923e4f1b464ec9e3b Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.gene_models_main.bed.gz +376b28e8926e83704965a437da5b4e53 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.gene_models_main.bed.gz.tbi +6e7f9595ec02f4e4237d2dfa760c6193 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.gene_models_main.gcv_chado.gff3.gz +e4b8949e03f22bc5cd8d2d9b79c53cbe Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.gene_models_main.gff3.gz +382a75ec6786a31ff4b5cb7e577783cd Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.gene_models_main.gff3.gz.tbi +94e1cc5507ab1abc7d4da9b3c5080026 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.info_annot.txt.gz +1cd9603f9dda6c2070654fdd41462aac Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.info_defline.txt.gz +c135b479d4730bec02fddd426b700f4a Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.legfed_v1_0.M65K.gfa.tsv.gz +178202f13d7baee66c4ad5238c79e74d Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.mrna_primary.fna.gz +6866f88ff81b948d060ebadde1debbbc Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.mrna_primary.fna.gz.fai +7358c0fbe2591aa5f83b5f70b8bb17ae Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.mrna_primary.fna.gz.gzi +65b4f3dde42c6ba08c9ce43a9299ad9b Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.mrna.fna.gz +57e57dafa317b54c2f6088cefe78b738 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.mrna.fna.gz.fai +8d3730169b13e22f88e896e8ccdeb451 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.mrna.fna.gz.gzi +40342155bf09c562b502d67fcb4bf81b Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.protein_primary.faa.gz +1b97f74f6979f67b1c47412d2af2c859 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.protein_primary.faa.gz.fai +0eae142a5e73dfa43cd6750eaa5d779c Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.protein_primary.faa.gz.gzi +3e35c8a30027dade6992f0c093c9a419 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.protein.faa.gz +7eaa489ae48f66bd71b1225f495fe6f1 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.protein.faa.gz.fai +fc503c6c29c999c911f02e72dbb55ce8 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.protein.faa.gz.gzi +775527cf27bca4790166b107b6902a29 Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/phavu.UI111.gnm1.ann1.8L4N.repeatmasked_assembly_v1.0.gff3.gz +d8ad8ceafcd5599687480384302cd95e Phaseolus/vulgaris/annotations/UI111.gnm1.ann1.8L4N/README.UI111.gnm1.ann1.8L4N.yml diff --git a/Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/CHECKSUM.Cameor.gnm1.ann1.7SZR.md5 b/Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/CHECKSUM.Cameor.gnm1.ann1.7SZR.md5 index f389dd23..f3dab76b 100644 --- a/Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/CHECKSUM.Cameor.gnm1.ann1.7SZR.md5 +++ b/Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/CHECKSUM.Cameor.gnm1.ann1.7SZR.md5 @@ -1,29 +1,25 @@ -4390ff29124e12375020d8509a8876c5 ./pissa.Cameor.gnm1.ann1.7SZR.gene_models_main.gff3.gz -87f911a653d538de312da1b8ad1935bc ./pissa.Cameor.gnm1.ann1.7SZR.mrna_primary.fna.gz -d4b56535e0f2610fe67f6057ac593000 ./pissa.Cameor.gnm1.ann1.7SZR.protein_primary.faa.gz.gzi -1ad9737b1548c01dd2493429ef3b5c5b ./pissa.Cameor.gnm1.ann1.7SZR.mrna.fna.gz.fai -d716ffa3b68326da9c92aa2abdbd518e ./pissa.Cameor.gnm1.ann1.7SZR.gene_models_main.gff3.gz.csi -884a7efe955c8b300131c3fabd1e9230 ./README.Cameor.gnm1.ann1.7SZR.yml -1f717545d8558245d0ff206fb313aafa ./pissa.Cameor.gnm1.ann1.7SZR.protein.faa.gz -085a8aac59784821c5083b415c6d67a7 ./pissa.Cameor.gnm1.ann1.7SZR.protein.faa.gz.gzi -eab9a97cd9cdd9cb2e41b37c2e2062e9 ./pissa.Cameor.gnm1.ann1.7SZR.cds.fna.gz.gzi -cea35fdbe658227b4f4f16ef2d2a347a ./pissa.Cameor.gnm1.ann1.7SZR.cds_primary.fna.gz.fai -5db95c71dca46416a4a49828c3f6721d ./pissa.Cameor.gnm1.ann1.7SZR.legfed_v1_0.M65K.gfa.tsv.gz -cdc440a11f823552a090f0fa0544af25 ./busco/pissa.Cameor.gnm1.ann1.7SZR.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.pissa.Cameor.gnm1.ann1.7SZR.protein_primaryTranscript.faa.gz_busco.txt -46a12e84a0296dfcea227429b66e8659 ./busco/pissa.Cameor.gnm1.ann1.7SZR.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.pissa.Cameor.gnm1.ann1.7SZR.protein.faa.gz_busco.txt -0d567a5737bf9933c62d067af2a0588c ./pissa.Cameor.gnm1.ann1.7SZR.cds.bed.gz.csi -5196394aca3fb8a57a4680057b5259d2 ./pissa.Cameor.gnm1.ann1.7SZR.cds.fna.gz -38d3278994eccaf853f7d013e0390a66 ./pissa.Cameor.gnm1.ann1.7SZR.mrna_primary.fna.gz.fai -cac5b777d7eec32e45174a64c152b5da ./pissa.Cameor.gnm1.ann1.7SZR.cds_primary.fna.gz -68599be6b89b34577246571e3c110921 ./CHANGES.Cameor.gnm1.ann1.7SZR.txt -a9fc9dc3678d6099db3a393fbac2dcdd ./pissa.Cameor.gnm1.ann1.7SZR.mrna_primary.fna.gz.gzi -57fb53fdba9fb42140103266036a6d12 ./MANIFEST.Cameor.gnm1.ann1.7SZR.descriptions.yml -b7ca7b00838ea1fb3b84ffb543df74e4 ./pissa.Cameor.gnm1.ann1.7SZR.cds.bed.gz -221117109239a30599c5b12c3af737ad ./MANIFEST.Cameor.gnm1.ann1.7SZR.correspondence.yml -6c291f3445b1dc87b3ead173fd159126 ./pissa.Cameor.gnm1.ann1.7SZR.mrna.fna.gz -fda119447f209ed74bf80da9b21106e7 ./pissa.Cameor.gnm1.ann1.7SZR.protein.faa.gz.fai -d58fe7e10f18a3c0003f3744bc979c29 ./pissa.Cameor.gnm1.ann1.7SZR.protein_primary.faa.gz -2b5e2755bce849b66db9637f34b94a98 ./pissa.Cameor.gnm1.ann1.7SZR.cds.fna.gz.fai -1c5de471798411810cc6f2e131b44eee ./pissa.Cameor.gnm1.ann1.7SZR.cds_primary.fna.gz.gzi -21d399ede0fc9e86e9e6db1e42fe3503 ./pissa.Cameor.gnm1.ann1.7SZR.mrna.fna.gz.gzi -69c1961731255325b1fd483a151a69ad ./pissa.Cameor.gnm1.ann1.7SZR.protein_primary.faa.gz.fai +6e0f6dda7ea2cd9f22e683a2461c107f Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/CHANGES.Cameor.gnm1.ann1.7SZR.txt +221117109239a30599c5b12c3af737ad Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/MANIFEST.Cameor.gnm1.ann1.7SZR.correspondence.yml +57fb53fdba9fb42140103266036a6d12 Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/MANIFEST.Cameor.gnm1.ann1.7SZR.descriptions.yml +cac5b777d7eec32e45174a64c152b5da Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.cds_primary.fna.gz +cea35fdbe658227b4f4f16ef2d2a347a Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.cds_primary.fna.gz.fai +1c5de471798411810cc6f2e131b44eee Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.cds_primary.fna.gz.gzi +5196394aca3fb8a57a4680057b5259d2 Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.cds.fna.gz +2b5e2755bce849b66db9637f34b94a98 Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.cds.fna.gz.fai +eab9a97cd9cdd9cb2e41b37c2e2062e9 Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.cds.fna.gz.gzi +3d9258e16975ebb8d39c9a437e9f522e Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.gene_models_main.bed.gz +f02318395c1323469e8763b8e283a801 Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.gene_models_main.gff3.gz +5db95c71dca46416a4a49828c3f6721d Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.legfed_v1_0.M65K.gfa.tsv.gz +87f911a653d538de312da1b8ad1935bc Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.mrna_primary.fna.gz +38d3278994eccaf853f7d013e0390a66 Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.mrna_primary.fna.gz.fai +a9fc9dc3678d6099db3a393fbac2dcdd Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.mrna_primary.fna.gz.gzi +6c291f3445b1dc87b3ead173fd159126 Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.mrna.fna.gz +1ad9737b1548c01dd2493429ef3b5c5b Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.mrna.fna.gz.fai +21d399ede0fc9e86e9e6db1e42fe3503 Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.mrna.fna.gz.gzi +d58fe7e10f18a3c0003f3744bc979c29 Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.protein_primary.faa.gz +69c1961731255325b1fd483a151a69ad Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.protein_primary.faa.gz.fai +d4b56535e0f2610fe67f6057ac593000 Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.protein_primary.faa.gz.gzi +1f717545d8558245d0ff206fb313aafa Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.protein.faa.gz +fda119447f209ed74bf80da9b21106e7 Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.protein.faa.gz.fai +085a8aac59784821c5083b415c6d67a7 Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/pissa.Cameor.gnm1.ann1.7SZR.protein.faa.gz.gzi +884a7efe955c8b300131c3fabd1e9230 Pisum/sativum/annotations/Cameor.gnm1.ann1.7SZR/README.Cameor.gnm1.ann1.7SZR.yml diff --git a/Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/CHECKSUM.MilvusB.gnm2.ann1.DFgp.md5 b/Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/CHECKSUM.MilvusB.gnm2.ann1.DFgp.md5 index 5c180369..ef909b7b 100644 --- a/Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/CHECKSUM.MilvusB.gnm2.ann1.DFgp.md5 +++ b/Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/CHECKSUM.MilvusB.gnm2.ann1.DFgp.md5 @@ -1,31 +1,29 @@ -ce55c8a558b5eaa26b4f553b130b2997 ./tripr.MilvusB.gnm2.ann1.DFgp.mrna.fna.gz.fai -2f34f35d81031020ffaca44278a0600f ./MANIFEST.MilvusB.gnm2.ann1.DFgp.correspondence.yml -f9762e6d7d2de031198f8836366cf23f ./CHANGES.MilvusB.gnm2.ann1.DFgp.txt -27a1c9b6a06c459ac06ada019d4a003d ./MANIFEST.MilvusB.gnm2.ann1.DFgp.descriptions.yml -6ef057a1ec6b9ce29e751cb6169b0e8e ./tripr.MilvusB.gnm2.ann1.DFgp.protein.faa.gz -cb33b98ee19519b4df71c803e06f8cdb ./tripr.MilvusB.gnm2.ann1.DFgp.protein.faa.gz.gzi -74f0383b96cb9abb37d62ee4c6b43181 ./busco/tripr.MilvusB.gnm2.ann1.DFgp.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.tripr.MilvusB.gnm2.ann1.DFgp.protein_primaryTranscript.faa.gz_busco.txt -53c2791ca09e43a626e77f0acabeee80 ./busco/tripr.MilvusB.gnm2.ann1.DFgp.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.tripr.MilvusB.gnm2.ann1.DFgp.protein.faa.gz_busco.txt -0bbfc860cbbb3398d0083fa18060c266 ./tripr.MilvusB.gnm2.ann1.DFgp.cds.fna.gz.gzi -039770046bf0ee4c23605065b13942a2 ./tripr.MilvusB.gnm2.ann1.DFgp.protein_primary.faa.gz.gzi -c68ddc292c0bb6934820daf8852ca2bb ./tripr.MilvusB.gnm2.ann1.DFgp.cds_primary.fna.gz.fai -2c7ade8133156dac5c428efbbd2b3c0b ./tripr.MilvusB.gnm2.ann1.DFgp.gene_models_gbrowse.gff3.gz -9ad6ae97920bab78235760ea5d158e00 ./tripr.MilvusB.gnm2.ann1.DFgp.cds.bed.gz -b6d21fdcfe719157b68df81bd253afb5 ./tripr.MilvusB.gnm2.ann1.DFgp.mrna_primary.fna.gz.fai -e781b5e0e425385d968beb47113a4c72 ./tripr.MilvusB.gnm2.ann1.DFgp.mrna_primary.fna.gz -05781ceabd03296fa4df1fce9006fd12 ./tripr.MilvusB.gnm2.ann1.DFgp.cds.bed.gz.tbi -6cc64f820eb23fd1aa1ad7da57347d1f ./tripr.MilvusB.gnm2.ann1.DFgp.legfed_v1_0.M65K.gfa.tsv.gz -411815dd931776fe88c1502ebebe9221 ./tripr.MilvusB.gnm2.ann1.DFgp.cds_primary.fna.gz -71e7b2c089ed6dc008eae73e32f67fcf ./tripr.MilvusB.gnm2.ann1.DFgp.mrna_primary.fna.gz.gzi -9ad08b0fd3fbc55a7feeebf2f5eb7346 ./tripr.MilvusB.gnm2.ann1.DFgp.gene_models_main.gff3.gz -27cc1de52d58128630c6738cbccd1e07 ./tripr.MilvusB.gnm2.ann1.DFgp.cds.fna.gz -c6e655b03244ddd185d235dbd1543778 ./tripr.MilvusB.gnm2.ann1.DFgp.gene_models_main.gff3.gz.tbi -689f85d52f7f79ca055718aeebcc2e85 ./tripr.MilvusB.gnm2.ann1.DFgp.cds.fna.gz.fai -8a2ab5dd1a0c06a1792f4e0ffcb852c2 ./tripr.MilvusB.gnm2.ann1.DFgp.protein_primary.faa.gz -dac00c7d28bf4fcacd45865f020455c0 ./tripr.MilvusB.gnm2.ann1.DFgp.protein_primary.faa.gz.fai -0ca63c72ce2625de7ee8259c2703d9e7 ./tripr.MilvusB.gnm2.ann1.DFgp.cds_primary.fna.gz.gzi -a4cd79c73b79f13dcf8539b37925c6bd ./tripr.MilvusB.gnm2.ann1.DFgp.mrna.fna.gz -ca89371cc4b01822d545163250207c42 ./tripr.MilvusB.gnm2.ann1.DFgp.protein.faa.gz.fai -fd7b99a34c9850cef6cf304b643aba7a ./tripr.MilvusB.gnm2.ann1.DFgp.mrna.fna.gz.gzi -3b207597be8da10e2d242b495716d974 ./README.MilvusB.gnm2.ann1.DFgp.yml -c737fe28048b36928e0b05bc1e8cfbe2 ./tripr.MilvusB.gnm2.ann1.DFgp.info_annot_AHRD.txt.gz +f9762e6d7d2de031198f8836366cf23f Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/CHANGES.MilvusB.gnm2.ann1.DFgp.txt +2f34f35d81031020ffaca44278a0600f Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/MANIFEST.MilvusB.gnm2.ann1.DFgp.correspondence.yml +27a1c9b6a06c459ac06ada019d4a003d Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/MANIFEST.MilvusB.gnm2.ann1.DFgp.descriptions.yml +3b207597be8da10e2d242b495716d974 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/README.MilvusB.gnm2.ann1.DFgp.yml +411815dd931776fe88c1502ebebe9221 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.cds_primary.fna.gz +c68ddc292c0bb6934820daf8852ca2bb Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.cds_primary.fna.gz.fai +0ca63c72ce2625de7ee8259c2703d9e7 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.cds_primary.fna.gz.gzi +27cc1de52d58128630c6738cbccd1e07 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.cds.fna.gz +689f85d52f7f79ca055718aeebcc2e85 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.cds.fna.gz.fai +0bbfc860cbbb3398d0083fa18060c266 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.cds.fna.gz.gzi +2c7ade8133156dac5c428efbbd2b3c0b Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.gene_models_gbrowse.gff3.gz +198c7db8fde00838efc6dfeaca69e3d3 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.gene_models_main.bed.gz +e3580814e6bd4939516e8a1e0acd0445 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.gene_models_main.bed.gz.tbi +9ad08b0fd3fbc55a7feeebf2f5eb7346 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.gene_models_main.gff3.gz +c6e655b03244ddd185d235dbd1543778 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.gene_models_main.gff3.gz.tbi +c737fe28048b36928e0b05bc1e8cfbe2 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.info_annot_AHRD.txt.gz +6cc64f820eb23fd1aa1ad7da57347d1f Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.legfed_v1_0.M65K.gfa.tsv.gz +e781b5e0e425385d968beb47113a4c72 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.mrna_primary.fna.gz +b6d21fdcfe719157b68df81bd253afb5 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.mrna_primary.fna.gz.fai +71e7b2c089ed6dc008eae73e32f67fcf Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.mrna_primary.fna.gz.gzi +a4cd79c73b79f13dcf8539b37925c6bd Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.mrna.fna.gz +ce55c8a558b5eaa26b4f553b130b2997 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.mrna.fna.gz.fai +fd7b99a34c9850cef6cf304b643aba7a Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.mrna.fna.gz.gzi +8a2ab5dd1a0c06a1792f4e0ffcb852c2 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.protein_primary.faa.gz +dac00c7d28bf4fcacd45865f020455c0 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.protein_primary.faa.gz.fai +039770046bf0ee4c23605065b13942a2 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.protein_primary.faa.gz.gzi +6ef057a1ec6b9ce29e751cb6169b0e8e Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.protein.faa.gz +ca89371cc4b01822d545163250207c42 Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.protein.faa.gz.fai +cb33b98ee19519b4df71c803e06f8cdb Trifolium/pratense/annotations/MilvusB.gnm2.ann1.DFgp/tripr.MilvusB.gnm2.ann1.DFgp.protein.faa.gz.gzi diff --git a/Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/CHECKSUM.Daliak.gnm2.ann1.MFKF.md5 b/Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/CHECKSUM.Daliak.gnm2.ann1.MFKF.md5 index aa3b2289..a91ab2d7 100644 --- a/Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/CHECKSUM.Daliak.gnm2.ann1.MFKF.md5 +++ b/Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/CHECKSUM.Daliak.gnm2.ann1.MFKF.md5 @@ -1,29 +1,29 @@ -8ded8c22432477b0b94177d8daa724cd ./trisu.Daliak.gnm2.ann1.MFKF.cds.bed.gz -af4b3e2df870060ede101f5370dfd534 ./trisu.Daliak.gnm2.ann1.MFKF.protein_primary.faa.gz.fai -378f22d7d90ae4488bb6ac2c081e374e ./trisu.Daliak.gnm2.ann1.MFKF.mrna.fna.gz.fai -2091c0b1d72f3ed1d36f7a2d18644c83 ./MANIFEST.Daliak.gnm2.ann1.MFKF.descriptions.yml -865dc38356d505996c042896d2ebd20e ./README.Daliak.gnm2.ann1.MFKF.yml -93f3704e12b9746af304e4f1a9b673f4 ./trisu.Daliak.gnm2.ann1.MFKF.protein.faa.gz.gzi -1b213669faf04a93aec8a1ba2db7145d ./trisu.Daliak.gnm2.ann1.MFKF.legfed_v1_0.M65K.gfa.tsv.gz -7f88497a9ee15d3e737abdd84b565d01 ./trisu.Daliak.gnm2.ann1.MFKF.mrna.fna.gz -e5bf7da73f96f0b940617f219ab023da ./trisu.Daliak.gnm2.ann1.MFKF.mrna_primary.fna.gz -e3c6b7d2a4bd3e92683a4136c1576775 ./trisu.Daliak.gnm2.ann1.MFKF.cds_primary.fna.gz.fai -784619d4ae68f099d3748ff368975252 ./MANIFEST.Daliak.gnm2.ann1.MFKF.correspondence.yml -690d5aedd747e9e204d9b2744186fccb ./trisu.Daliak.gnm2.ann1.MFKF.iprscan.gff3.gz -1cf9b6a8ef74d3a074d882aea2e32475 ./CHANGES.Daliak.gnm2.ann1.MFKF.txt -8247eff4e140de96ea999c95d6fb7cb6 ./trisu.Daliak.gnm2.ann1.MFKF.mrna_primary.fna.gz.gzi -5fef7ac3e385805b65b3f243cbbf01c6 ./trisu.Daliak.gnm2.ann1.MFKF.cds.fna.gz.fai -2198d72eab8d6f74fc4eed408c3603d6 ./trisu.Daliak.gnm2.ann1.MFKF.mrna_primary.fna.gz.fai -94f7a4e371d09d0c9db1d21fb1934e79 ./trisu.Daliak.gnm2.ann1.MFKF.cds.fna.gz.gzi -daaf2991fb50219b27b39007a6efeeb5 ./trisu.Daliak.gnm2.ann1.MFKF.cds_primary.fna.gz -b0a2a95a96ece2eef5689dc6dec29e97 ./trisu.Daliak.gnm2.ann1.MFKF.protein.faa.gz -b26cb11294b63798708928ee955bd743 ./trisu.Daliak.gnm2.ann1.MFKF.protein_primary.faa.gz -5fcf4363d66f81cda868ba7bf9009544 ./trisu.Daliak.gnm2.ann1.MFKF.gene_models_main.gff3.gz.tbi -744ad81f0019d5b8b348cb0f5af46329 ./trisu.Daliak.gnm2.ann1.MFKF.cds_primary.fna.gz.gzi -3cea45675ad5da6fb8a600c48b36cb82 ./trisu.Daliak.gnm2.ann1.MFKF.cds.bed.gz.tbi -fc814bed43d911edbb92141c02f36af5 ./trisu.Daliak.gnm2.ann1.MFKF.protein.faa.gz.fai -fb235334bf9fb8a3d54e24f298562493 ./trisu.Daliak.gnm2.ann1.MFKF.cds.fna.gz -6a75a6d4189a0fbe108d5a5fac227196 ./trisu.Daliak.gnm2.ann1.MFKF.iprscan.gff3.gz.tbi -df5cf6447e43c97282112021b195c0cd ./trisu.Daliak.gnm2.ann1.MFKF.mrna.fna.gz.gzi -abdeb890c3a22e4fefa32696b1f53f9a ./trisu.Daliak.gnm2.ann1.MFKF.gene_models_main.gff3.gz -fb0119e384bc6fdc6f32d7e4fa67cb2e ./trisu.Daliak.gnm2.ann1.MFKF.protein_primary.faa.gz.gzi +1cf9b6a8ef74d3a074d882aea2e32475 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/CHANGES.Daliak.gnm2.ann1.MFKF.txt +784619d4ae68f099d3748ff368975252 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/MANIFEST.Daliak.gnm2.ann1.MFKF.correspondence.yml +2091c0b1d72f3ed1d36f7a2d18644c83 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/MANIFEST.Daliak.gnm2.ann1.MFKF.descriptions.yml +865dc38356d505996c042896d2ebd20e Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/README.Daliak.gnm2.ann1.MFKF.yml +daaf2991fb50219b27b39007a6efeeb5 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.cds_primary.fna.gz +e3c6b7d2a4bd3e92683a4136c1576775 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.cds_primary.fna.gz.fai +744ad81f0019d5b8b348cb0f5af46329 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.cds_primary.fna.gz.gzi +fb235334bf9fb8a3d54e24f298562493 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.cds.fna.gz +5fef7ac3e385805b65b3f243cbbf01c6 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.cds.fna.gz.fai +94f7a4e371d09d0c9db1d21fb1934e79 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.cds.fna.gz.gzi +338b2c572c5b82974e7fed1d9d501ac3 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.gene_models_main.bed.gz +ca3d1ca90f10ce3c3559fb125e102c99 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.gene_models_main.bed.gz.tbi +abdeb890c3a22e4fefa32696b1f53f9a Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.gene_models_main.gff3.gz +5fcf4363d66f81cda868ba7bf9009544 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.gene_models_main.gff3.gz.tbi +690d5aedd747e9e204d9b2744186fccb Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.iprscan.gff3.gz +6a75a6d4189a0fbe108d5a5fac227196 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.iprscan.gff3.gz.tbi +1b213669faf04a93aec8a1ba2db7145d Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.legfed_v1_0.M65K.gfa.tsv.gz +e5bf7da73f96f0b940617f219ab023da Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.mrna_primary.fna.gz +2198d72eab8d6f74fc4eed408c3603d6 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.mrna_primary.fna.gz.fai +8247eff4e140de96ea999c95d6fb7cb6 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.mrna_primary.fna.gz.gzi +7f88497a9ee15d3e737abdd84b565d01 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.mrna.fna.gz +378f22d7d90ae4488bb6ac2c081e374e Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.mrna.fna.gz.fai +df5cf6447e43c97282112021b195c0cd Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.mrna.fna.gz.gzi +b26cb11294b63798708928ee955bd743 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.protein_primary.faa.gz +af4b3e2df870060ede101f5370dfd534 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.protein_primary.faa.gz.fai +fb0119e384bc6fdc6f32d7e4fa67cb2e Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.protein_primary.faa.gz.gzi +b0a2a95a96ece2eef5689dc6dec29e97 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.protein.faa.gz +fc814bed43d911edbb92141c02f36af5 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.protein.faa.gz.fai +93f3704e12b9746af304e4f1a9b673f4 Trifolium/subterraneum/annotations/Daliak.gnm2.ann1.MFKF/trisu.Daliak.gnm2.ann1.MFKF.protein.faa.gz.gzi diff --git a/Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/CHECKSUM.Hedin2.gnm1.ann1.PTNK.md5 b/Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/CHECKSUM.Hedin2.gnm1.ann1.PTNK.md5 index 8bc13cc4..2a7e37e1 100644 --- a/Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/CHECKSUM.Hedin2.gnm1.ann1.PTNK.md5 +++ b/Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/CHECKSUM.Hedin2.gnm1.ann1.PTNK.md5 @@ -1,38 +1,35 @@ -5c5cf9de03b543dcd169ae840b3ad8bb ./vicfa.Hedin2.gnm1.ann1.PTNK.transcript.fna.gz.fai -47dbe51e25979e5e904175a7a7aeaec9 ./vicfa.Hedin2.gnm1.ann1.PTNK.ncrna.fna.gz -bcacdca92a817010d2cd8d450c872229 ./vicfa.Hedin2.gnm1.ann1.PTNK.gene_models_main.gff3.gz -b09724b6f80f04781336167789084b42 ./vicfa.Hedin2.gnm1.ann1.PTNK.cds.bed.gz -d3826f0567a1661fd4916ffd0fc78a45 ./README.Hedin2.gnm1.ann1.PTNK.yml -986ba7c2a0e7d1fc380d55d6d8c1a0ac ./feature_id_remapping -6979931d750c9afbfa65a9838027e8aa ./vicfa.Hedin2.gnm1.ann1.PTNK.mrna_primary.fna.gz.fai -029d6467c673a94722190bcc444d1a59 ./vicfa.Hedin2.gnm1.ann1.PTNK.protein.faa.gz.fai -ffe9912a53db38b8b2ffcdd155bf1725 ./vicfa.Hedin2.gnm1.ann1.PTNK.protein_primary.faa.gz -d9fd17a6071366f91007d06e9df38e6e ./vicfa.Hedin2.gnm1.ann1.PTNK.protein_primary.faa.gz.gzi -4e34ea156a327d987f81f90d1e55bf38 ./vicfa.Hedin2.gnm1.ann1.PTNK.cds_primary.fna.gz.gzi -a1bb6c7e0bf2dfbf6b63ed4299ea6355 ./vicfa.Hedin2.gnm1.ann1.PTNK.mrna.fna.gz.fai -bb0cb7144e2c5a270e04eec81350b22f ./vicfa.Hedin2.gnm1.ann1.PTNK.legfed_v1_0.M65K.gfa.tsv.gz -11a3da73b9c2ba0ef1fd770eff6b4fdd ./vicfa.Hedin2.gnm1.ann1.PTNK.cds.fna.gz.fai -05bc0a0e83387e6041c0abeebd119761 ./vicfa.Hedin2.gnm1.ann1.PTNK.ncrna.fna.gz.fai -92d47e2989a5996056356103ee6f09cc ./vicfa.Hedin2.gnm1.ann1.PTNK.transcript.fna.gz -fee858c26fadb34891e7748e7e02928f ./vicfa.Hedin2.gnm1.ann1.PTNK.featid_map.tsv.gz -b634283e9057695425c0f5452007a3e7 ./MANIFEST.Hedin2.gnm1.ann1.PTNK.descriptions.yml -245d7d01a38cb40506c62b83e01ddb00 ./vicfa.Hedin2.gnm1.ann1.PTNK.iprscan.gff3.gz -fbbb8907cd12c4ef02dbcd37726bd5e3 ./MANIFEST.Hedin2.gnm1.ann1.PTNK.correspondence.yml -06be9bc2e4f29e1e4bbd925da91f5376 ./vicfa.Hedin2.gnm1.ann1.PTNK.cds_primary.fna.gz -befd4b6355f07f5292e835a1bee03dc3 ./vicfa.Hedin2.gnm1.ann1.PTNK.mrna_primary.fna.gz -623e0806cd35bd0dcdc1c7f37750d244 ./vicfa.Hedin2.gnm1.ann1.PTNK.protein.faa.gz -93564eb4e6993e8dbef9e213c43a7c72 ./CHANGES.Hedin2.gnm1.ann1.PTNK.txt -2799068b25af8d1e6cad58b9535dbee8 ./vicfa.Hedin2.gnm1.ann1.PTNK.cds.fna.gz.gzi -fe33c54acbe17df091db6530aaa401a7 ./vicfa.Hedin2.gnm1.ann1.PTNK.ncrna.fna.gz.gzi -c8340f7065cd499f59aa3508f69309b0 ./vicfa.Hedin2.gnm1.ann1.PTNK.protein_primary.faa.gz.fai -ef285e336f5ddc972cfabb29b20e81bd ./vicfa.Hedin2.gnm1.ann1.PTNK.cds_primary.fna.gz.fai -0bae3cdabedf5fc3e2221ce162c8e165 ./vicfa.Hedin2.gnm1.ann1.PTNK.mrna.fna.gz.gzi -241a845b736c0950a6addc0aa82b3416 ./vicfa.Hedin2.gnm1.ann1.PTNK.cds.fna.gz -a239d8704bd4571f5840d283d1d1ccfb ./vicfa.Hedin2.gnm1.ann1.PTNK.mrna_primary.fna.gz.gzi -a809fc8da7160f932c9643ad5ebaae8f ./vicfa.Hedin2.gnm1.ann1.PTNK.gene_models_main.gff3.gz.csi -e3840a76af604c9dc180a6d45ee80c2f ./vicfa.Hedin2.gnm1.ann1.PTNK.protein.faa.gz.gzi -19bcf6687c08f7c6cde59ccc196edec1 ./BUSCO/vicfa.Hedin2.gnm1.ann1.PTNK.busco.fabales_odb10.full_table.tsv.gz -55d80f6c60ddd38886f03e1f8068b585 ./BUSCO/vicfa.Hedin2.gnm1.ann1.PTNK.busco.fabales_odb10.short_summary.txt -17a030d29cc2b75621057ac0be204e11 ./BUSCO/vicfa.Hedin2.gnm1.ann1.PTNK.busco.fabales_odb10.short_summary.json -f8bfb625bd81280cb12a242536579f8e ./vicfa.Hedin2.gnm1.ann1.PTNK.mrna.fna.gz -0afd65dcec9179bfda9e509680dde625 ./vicfa.Hedin2.gnm1.ann1.PTNK.transcript.fna.gz.gzi +3020957b64e779db39fe1772a6ec10da Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/CHANGES.Hedin2.gnm1.ann1.PTNK.txt +986ba7c2a0e7d1fc380d55d6d8c1a0ac Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/feature_id_remapping.txt +fbbb8907cd12c4ef02dbcd37726bd5e3 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/MANIFEST.Hedin2.gnm1.ann1.PTNK.correspondence.yml +b634283e9057695425c0f5452007a3e7 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/MANIFEST.Hedin2.gnm1.ann1.PTNK.descriptions.yml +d3826f0567a1661fd4916ffd0fc78a45 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/README.Hedin2.gnm1.ann1.PTNK.yml +06be9bc2e4f29e1e4bbd925da91f5376 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.cds_primary.fna.gz +ef285e336f5ddc972cfabb29b20e81bd Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.cds_primary.fna.gz.fai +4e34ea156a327d987f81f90d1e55bf38 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.cds_primary.fna.gz.gzi +241a845b736c0950a6addc0aa82b3416 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.cds.fna.gz +11a3da73b9c2ba0ef1fd770eff6b4fdd Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.cds.fna.gz.fai +2799068b25af8d1e6cad58b9535dbee8 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.cds.fna.gz.gzi +fee858c26fadb34891e7748e7e02928f Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.featid_map.tsv.gz +b448d44c42b73820efd0d1a26d4301ae Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.gene_models_main.bed.gz +bcacdca92a817010d2cd8d450c872229 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.gene_models_main.gff3.gz +a809fc8da7160f932c9643ad5ebaae8f Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.gene_models_main.gff3.gz.csi +245d7d01a38cb40506c62b83e01ddb00 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.iprscan.gff3.gz +bb0cb7144e2c5a270e04eec81350b22f Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.legfed_v1_0.M65K.gfa.tsv.gz +befd4b6355f07f5292e835a1bee03dc3 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.mrna_primary.fna.gz +6979931d750c9afbfa65a9838027e8aa Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.mrna_primary.fna.gz.fai +a239d8704bd4571f5840d283d1d1ccfb Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.mrna_primary.fna.gz.gzi +f8bfb625bd81280cb12a242536579f8e Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.mrna.fna.gz +a1bb6c7e0bf2dfbf6b63ed4299ea6355 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.mrna.fna.gz.fai +0bae3cdabedf5fc3e2221ce162c8e165 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.mrna.fna.gz.gzi +47dbe51e25979e5e904175a7a7aeaec9 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.ncrna.fna.gz +05bc0a0e83387e6041c0abeebd119761 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.ncrna.fna.gz.fai +fe33c54acbe17df091db6530aaa401a7 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.ncrna.fna.gz.gzi +ffe9912a53db38b8b2ffcdd155bf1725 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.protein_primary.faa.gz +c8340f7065cd499f59aa3508f69309b0 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.protein_primary.faa.gz.fai +d9fd17a6071366f91007d06e9df38e6e Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.protein_primary.faa.gz.gzi +623e0806cd35bd0dcdc1c7f37750d244 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.protein.faa.gz +029d6467c673a94722190bcc444d1a59 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.protein.faa.gz.fai +e3840a76af604c9dc180a6d45ee80c2f Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.protein.faa.gz.gzi +92d47e2989a5996056356103ee6f09cc Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.transcript.fna.gz +5c5cf9de03b543dcd169ae840b3ad8bb Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.transcript.fna.gz.fai +0afd65dcec9179bfda9e509680dde625 Vicia/faba/annotations/Hedin2.gnm1.ann1.PTNK/vicfa.Hedin2.gnm1.ann1.PTNK.transcript.fna.gz.gzi diff --git a/Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X/CHECKSUM.Tiffany.gnm1.ann1.Y54X.md5 b/Vicia/faba/annotations/Tiffany.gnm1.ann1.Y54X/CHECKSUM.Tiffany.gnm1.ann1.Y54X.md5 index a8c08ad6..7014a032 100644 --- 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f519fe16..63d7c884 100644 --- a/Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/CHECKSUM.Gyeongwon.gnm3.ann1.3Nz5.md5 +++ b/Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/CHECKSUM.Gyeongwon.gnm3.ann1.3Nz5.md5 @@ -1,31 +1,28 @@ -ffb11cf895ead689ccdb5839af579d81 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.protein_primary.faa.gz -e1d3fc4631e7726ed87a299cecbe028d ./vigan.Gyeongwon.gnm3.ann1.3Nz5.protein_primary.faa.gz.fai -3b3e9e289eaf84803124b237d4ccac36 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.cds_primary.fna.gz.gzi -fe55f6e4be0a52fed5b41fcc3d216525 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.cds.bed.gz.tbi -46728954ba530df730fd02b512f5884a ./vigan.Gyeongwon.gnm3.ann1.3Nz5.info_annot_AHRD.txt.gz -3ef7ccec93cca368360b84bd128a958c ./vigan.Gyeongwon.gnm3.ann1.3Nz5.protein.faa.gz.gzi -e72ad3db884dd22da643e21f06525107 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.mrna.fna.gz -3ddf16a1e3fec20a0b2a4495467c3925 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.mrna_primary.fna.gz.fai -fa8ad934f8b8048cf205db3fcadea53a ./vigan.Gyeongwon.gnm3.ann1.3Nz5.legfed_v1_0.M65K.pathway.tsv.gz -34db43ad2896450e7b20cb351967de80 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.legfed_v1_0.M65K.gfa.tsv.gz -40b16ede1cd1b31d4dd254acafab2d55 ./busco/vigan.Gyeongwon.gnm3.ann1.3Nz5.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.vigan.Gyeongwon.gnm3.ann1.3Nz5.protein.faa.gz_busco.txt -f7e1e65468c7879edc8f98a3c4265cfc ./busco/vigan.Gyeongwon.gnm3.ann1.3Nz5.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.vigan.Gyeongwon.gnm3.ann1.3Nz5.protein_primaryTranscript.faa.gz_busco.txt -8b01c66c65ae412cfef7d6f0d8773f24 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.protein.faa.gz -2b938cfd60685eccdc2c23b196121a6a ./vigan.Gyeongwon.gnm3.ann1.3Nz5.cds.bed.gz -4c7e59794ca860a853c6725e3b468d35 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.cds.fna.gz.gzi -4a2fa852f1ba649d7fef3d804b62ec92 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.mrna.fna.gz.fai -08b74c095671d740df1ad657e9cbd850 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.gene_models_main.gff3.gz.tbi -ab7675fbfb601148caf168779d79e413 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.cds_primary.fna.gz -e9ee5038981fdd84cafb04703a1c65f2 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.mrna.fna.gz.gzi -e1109752aaf212b077331faf0aefdec8 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.cds.fna.gz -c3a82e409933f577fe504a28fbe138c3 ./README.Gyeongwon.gnm3.ann1.3Nz5.yml -4b5bae6e8bfe43083d4b795cff204f7f ./vigan.Gyeongwon.gnm3.ann1.3Nz5.cds.fna.gz.fai -2765f40c4b7df634a27345c9451a8f96 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.mrna_primary.fna.gz.gzi -4455a8f427f0ed0e2dee905977802ce6 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.mrna_primary.fna.gz -3cb71baaadad9fa851ec617ef5910800 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.protein.faa.gz.fai -8a97f42067952686d8eeb75d7ad3705a ./vigan.Gyeongwon.gnm3.ann1.3Nz5.protein_primary.faa.gz.gzi -9b3dfdd6bd9de711883af7822f100c72 ./vigan.Gyeongwon.gnm3.ann1.3Nz5.gene_models_main.gff3.gz -124317bc4bb60a0969de02a5924f9ff7 ./MANIFEST.Gyeongwon.gnm3.ann1.3Nz5.correspondence.yml -49998f08c01658453e77d3fe4390936c 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Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.cds_primary.fna.gz.fai +3b3e9e289eaf84803124b237d4ccac36 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.cds_primary.fna.gz.gzi +e1109752aaf212b077331faf0aefdec8 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.cds.fna.gz +4b5bae6e8bfe43083d4b795cff204f7f Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.cds.fna.gz.fai +4c7e59794ca860a853c6725e3b468d35 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.cds.fna.gz.gzi +559d7d6e50961ee2aa6cb6995921310d Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.gene_models_main.bed.gz +3c1a334ededc32f2f1fa48be0acd774d Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.gene_models_main.bed.gz.tbi +9b3dfdd6bd9de711883af7822f100c72 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.gene_models_main.gff3.gz +08b74c095671d740df1ad657e9cbd850 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.gene_models_main.gff3.gz.tbi +46728954ba530df730fd02b512f5884a Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.info_annot_AHRD.txt.gz +34db43ad2896450e7b20cb351967de80 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.legfed_v1_0.M65K.gfa.tsv.gz +4455a8f427f0ed0e2dee905977802ce6 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.mrna_primary.fna.gz +3ddf16a1e3fec20a0b2a4495467c3925 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.mrna_primary.fna.gz.fai +2765f40c4b7df634a27345c9451a8f96 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.mrna_primary.fna.gz.gzi +e72ad3db884dd22da643e21f06525107 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.mrna.fna.gz +4a2fa852f1ba649d7fef3d804b62ec92 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.mrna.fna.gz.fai +e9ee5038981fdd84cafb04703a1c65f2 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.mrna.fna.gz.gzi +ffb11cf895ead689ccdb5839af579d81 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.protein_primary.faa.gz +e1d3fc4631e7726ed87a299cecbe028d Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.protein_primary.faa.gz.fai +8a97f42067952686d8eeb75d7ad3705a Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.protein_primary.faa.gz.gzi +8b01c66c65ae412cfef7d6f0d8773f24 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.protein.faa.gz +3cb71baaadad9fa851ec617ef5910800 Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.protein.faa.gz.fai +3ef7ccec93cca368360b84bd128a958c Vigna/angularis/annotations/Gyeongwon.gnm3.ann1.3Nz5/vigan.Gyeongwon.gnm3.ann1.3Nz5.protein.faa.gz.gzi diff --git a/Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/CHECKSUM.Shumari.gnm1.ann1.8BRS.md5 b/Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/CHECKSUM.Shumari.gnm1.ann1.8BRS.md5 index a0976ad2..1cdccccf 100644 --- a/Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/CHECKSUM.Shumari.gnm1.ann1.8BRS.md5 +++ b/Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/CHECKSUM.Shumari.gnm1.ann1.8BRS.md5 @@ -1,31 +1,29 @@ -fee76b3e08e8cf923f46efd9f1d6cb38 ./vigan.Shumari.gnm1.ann1.8BRS.cds_primary.fna.gz -67c44a52ac1b3b1699897d93c68d1405 ./vigan.Shumari.gnm1.ann1.8BRS.gene_models_main.gff3.gz -d49847b4edb25ab954306bd40f73cac1 ./vigan.Shumari.gnm1.ann1.8BRS.cds.fna.gz.fai -7a501a22406f51e375e539e76570077b ./busco/vigan.Shumari.gnm1.ann1.8BRS.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.vigan.Shumari.gnm1.ann1.8BRS.protein_primaryTranscript.faa.gz_busco.txt -4dfcb7c49926abb07a2dad24030dfac5 ./vigan.Shumari.gnm1.ann1.8BRS.mrna_primary.fna.gz.fai -9eebd047f49131ac5b2f37712f8a35e5 ./vigan.Shumari.gnm1.ann1.8BRS.protein_primary.faa.gz.fai -d49847b4edb25ab954306bd40f73cac1 ./vigan.Shumari.gnm1.ann1.8BRS.cds_primary.fna.gz.fai -acaecf59df6094b7d7ad3950b711ff06 ./vigan.Shumari.gnm1.ann1.8BRS.mrna.fna.gz.gzi -42ddf02d4453fcda48008c0484e79536 ./vigan.Shumari.gnm1.ann1.8BRS.iprscan.gff3.gz.tbi -9eebd047f49131ac5b2f37712f8a35e5 ./vigan.Shumari.gnm1.ann1.8BRS.protein.faa.gz.fai -762833b630971d5e8404b3044e551760 ./MANIFEST.Shumari.gnm1.ann1.8BRS.correspondence.yml -171c7e94827a32ace7b6a3d70c996cb7 ./CHANGES.Shumari.gnm1.ann1.8BRS.txt -6b09b64d6d2ac3df93cc67c1a667a405 ./vigan.Shumari.gnm1.ann1.8BRS.cds.bed.gz -8685ea9aecf039ded05f653bb7e5a3c9 ./MANIFEST.Shumari.gnm1.ann1.8BRS.descriptions.yml -1d4fbe7b5715171f05bbd099d84b5ac1 ./vigan.Shumari.gnm1.ann1.8BRS.gene_models_main.gff3.gz.tbi -4dfcb7c49926abb07a2dad24030dfac5 ./vigan.Shumari.gnm1.ann1.8BRS.mrna.fna.gz.fai -fecf936ba859cd3447540f99f1f2b4a6 ./vigan.Shumari.gnm1.ann1.8BRS.cds.bed.gz.tbi -74a51a6680c371da230e026a123e1141 ./vigan.Shumari.gnm1.ann1.8BRS.protein.faa.gz.gzi -bccb28ece3e4d66cfebe76d61c2b1a10 ./vigan.Shumari.gnm1.ann1.8BRS.protein_primary.faa.gz -675565e93b373e25bf3f1b719c1623b6 ./vigan.Shumari.gnm1.ann1.8BRS.cds_primary.fna.gz.gzi -fee76b3e08e8cf923f46efd9f1d6cb38 ./vigan.Shumari.gnm1.ann1.8BRS.cds.fna.gz -acaecf59df6094b7d7ad3950b711ff06 ./vigan.Shumari.gnm1.ann1.8BRS.mrna_primary.fna.gz.gzi -776479c647bede6897084fbf67d0c0c1 ./vigan.Shumari.gnm1.ann1.8BRS.legfed_v1_0.M65K.pathway.tsv.gz -74a51a6680c371da230e026a123e1141 ./vigan.Shumari.gnm1.ann1.8BRS.protein_primary.faa.gz.gzi -ab539dfc5c95945aef2fcc152c820f11 ./vigan.Shumari.gnm1.ann1.8BRS.legfed_v1_0.M65K.gfa.tsv.gz -78f225fc42e8c77e143d5e1c9cf7537e ./vigan.Shumari.gnm1.ann1.8BRS.iprscan.gff3.gz -675565e93b373e25bf3f1b719c1623b6 ./vigan.Shumari.gnm1.ann1.8BRS.cds.fna.gz.gzi -1331dfdb396e5310eb68771014208f97 ./README.Shumari.gnm1.ann1.8BRS.yml -bccb28ece3e4d66cfebe76d61c2b1a10 ./vigan.Shumari.gnm1.ann1.8BRS.protein.faa.gz -2a8644f9128634b76680d0f1c4c41bff ./vigan.Shumari.gnm1.ann1.8BRS.mrna.fna.gz -2a8644f9128634b76680d0f1c4c41bff ./vigan.Shumari.gnm1.ann1.8BRS.mrna_primary.fna.gz +171c7e94827a32ace7b6a3d70c996cb7 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/CHANGES.Shumari.gnm1.ann1.8BRS.txt +762833b630971d5e8404b3044e551760 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/MANIFEST.Shumari.gnm1.ann1.8BRS.correspondence.yml +8685ea9aecf039ded05f653bb7e5a3c9 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/MANIFEST.Shumari.gnm1.ann1.8BRS.descriptions.yml +7a39a799dec2b2e32811c1be841ebc7a Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/README.Shumari.gnm1.ann1.8BRS.yml +fee76b3e08e8cf923f46efd9f1d6cb38 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.cds_primary.fna.gz +d49847b4edb25ab954306bd40f73cac1 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.cds_primary.fna.gz.fai +675565e93b373e25bf3f1b719c1623b6 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.cds_primary.fna.gz.gzi +fee76b3e08e8cf923f46efd9f1d6cb38 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.cds.fna.gz +d49847b4edb25ab954306bd40f73cac1 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.cds.fna.gz.fai +675565e93b373e25bf3f1b719c1623b6 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.cds.fna.gz.gzi +5d30fd596738f21480da5e461addaa47 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.gene_models_main.bed.gz +b40213d5891b42cd25f150734ecef8d8 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.gene_models_main.bed.gz.tbi +67c44a52ac1b3b1699897d93c68d1405 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.gene_models_main.gff3.gz +1d4fbe7b5715171f05bbd099d84b5ac1 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.gene_models_main.gff3.gz.tbi +78f225fc42e8c77e143d5e1c9cf7537e Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.iprscan.gff3.gz +42ddf02d4453fcda48008c0484e79536 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.iprscan.gff3.gz.tbi +ab539dfc5c95945aef2fcc152c820f11 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.legfed_v1_0.M65K.gfa.tsv.gz +2a8644f9128634b76680d0f1c4c41bff Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.mrna_primary.fna.gz +4dfcb7c49926abb07a2dad24030dfac5 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.mrna_primary.fna.gz.fai +acaecf59df6094b7d7ad3950b711ff06 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.mrna_primary.fna.gz.gzi +2a8644f9128634b76680d0f1c4c41bff Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.mrna.fna.gz +4dfcb7c49926abb07a2dad24030dfac5 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.mrna.fna.gz.fai +acaecf59df6094b7d7ad3950b711ff06 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.mrna.fna.gz.gzi +bccb28ece3e4d66cfebe76d61c2b1a10 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.protein_primary.faa.gz +9eebd047f49131ac5b2f37712f8a35e5 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.protein_primary.faa.gz.fai +74a51a6680c371da230e026a123e1141 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.protein_primary.faa.gz.gzi +bccb28ece3e4d66cfebe76d61c2b1a10 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.protein.faa.gz +9eebd047f49131ac5b2f37712f8a35e5 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.protein.faa.gz.fai +74a51a6680c371da230e026a123e1141 Vigna/angularis/annotations/Shumari.gnm1.ann1.8BRS/vigan.Shumari.gnm1.ann1.8BRS.protein.faa.gz.gzi diff --git a/Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/CHECKSUM.VC1973A.gnm6.ann1.M1Qs.md5 b/Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/CHECKSUM.VC1973A.gnm6.ann1.M1Qs.md5 index a898e0c2..bfea6019 100644 --- a/Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/CHECKSUM.VC1973A.gnm6.ann1.M1Qs.md5 +++ b/Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/CHECKSUM.VC1973A.gnm6.ann1.M1Qs.md5 @@ -1,25 +1,20 @@ -3981b8e9757ab5fe74e06905b1da156a ./CHANGES.VC1973A.gnm6.ann1.M1Qs.txt -4f99c01eb65d67c16bc96b8cba674f5a ./vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_mrna.gff3.gz -b49115c3b9bb1988b3fd8a7a61730e9f ./vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_main.gff3.gz -54f6fca2ee765ad281c5e4f39b298cee ./vigra.VC1973A.gnm6.ann1.M1Qs.scaffolds_in_pchr.gff3.gz -3138f8a52bcb6f3d944daee2ff7d0cdc ./README.VC1973A.gnm6.ann1.M1Qs.yml -8430025afcfffc9bb34865328aef9b21 ./vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_main.gff3.gz.tbi -2b7d46eacecbcaa123e04cd03fd9ec80 ./vigra.VC1973A.gnm6.ann1.M1Qs.cds.fna.gz.fai -5067d3c7592c61fbe72be8af394e5102 ./BUSCO/vigra.VC1973A.gnm6.ann1.M1Qs.busco.fabales_odb10.short_summary.txt -4984b65db6752e2558d65dad5417603f ./BUSCO/vigra.VC1973A.gnm6.ann1.M1Qs.busco.fabales_odb10.full_table.tsv.gz -2d8cc53743c2c07f405da8204dd6b11e ./BUSCO/vigra.VC1973A.gnm6.ann1.M1Qs.busco.fabales_odb10.short_summary.json -6945b91e8e9227bf31532d51b4328ee7 ./vigra.VC1973A.gnm6.ann1.M1Qs.cds.bed.gz -008de9f3de3cde30ec46316f174875a3 ./MANIFEST.VC1973A.gnm6.ann1.M1Qs.descriptions.yml -53f1133c9e2b92c0629ff727895a4463 ./vigra.VC1973A.gnm6.ann1.M1Qs.protein.faa.gz.gzi -dd0d4664649fc33fc260bf8c673937c9 ./vigra.VC1973A.gnm6.ann1.M1Qs.mrna.fna.gz.gzi -b6099d48cfea6adff179faf811142097 ./vigra.VC1973A.gnm6.ann1.M1Qs.mrna.fna.gz.fai -5b78bd47499bd12ffee292d1ae808aaf ./busco/vigra.VC1973A.gnm6.ann1.M1Qs.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.vigra.VC1973A.gnm6.ann1.M1Qs.protein.faa.gz_busco.txt -a7f8ec96adf57dd79b9b9be080f4d52a ./vigra.VC1973A.gnm6.ann1.M1Qs.protein.faa.gz.fai -2df4eb15584d44167f4317cf7e3d8731 ./vigra.VC1973A.gnm6.ann1.M1Qs.cds.fna.gz -baec66987b564af1c44a5acf77d01fd7 ./vigra.VC1973A.gnm6.ann1.M1Qs.protein.faa.gz -70143b1038481a477d2545607737c6e3 ./vigra.VC1973A.gnm6.ann1.M1Qs.cds.fna.gz.gzi -ec1ca729197bf7c160af9cc247207ab1 ./MANIFEST.VC1973A.gnm6.ann1.M1Qs.correspondence.yml -ad4b9dcbe85fc79ce821711ec68cca45 ./vigra.VC1973A.gnm6.ann1.M1Qs.mrna.fna.gz -4f0b0bf5d897934acead2e48663c5ac1 ./vigra.VC1973A.gnm6.ann1.M1Qs.cds.bed.gz.tbi -8ba638a1ecf8ca4324bbbc721d44e847 ./vigra.VC1973A.gnm6.ann1.M1Qs.pathway.tsv.gz -ba81ed598110db63030b56942f3a94bb ./vigra.VC1973A.gnm6.ann1.M1Qs.legfed_v1_0.M65K.gfa.tsv.gz +3981b8e9757ab5fe74e06905b1da156a Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/CHANGES.VC1973A.gnm6.ann1.M1Qs.txt +ec1ca729197bf7c160af9cc247207ab1 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/MANIFEST.VC1973A.gnm6.ann1.M1Qs.correspondence.yml +008de9f3de3cde30ec46316f174875a3 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/MANIFEST.VC1973A.gnm6.ann1.M1Qs.descriptions.yml +3138f8a52bcb6f3d944daee2ff7d0cdc Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/README.VC1973A.gnm6.ann1.M1Qs.yml +2df4eb15584d44167f4317cf7e3d8731 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.cds.fna.gz +2b7d46eacecbcaa123e04cd03fd9ec80 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.cds.fna.gz.fai +70143b1038481a477d2545607737c6e3 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.cds.fna.gz.gzi +e54775d2925e022d4ccea3ff3898fbdb Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_main.bed.gz +68af0223826b0eaaab1fe0a7ef7ea8ed Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_main.bed.gz.tbi +b49115c3b9bb1988b3fd8a7a61730e9f Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_main.gff3.gz +8430025afcfffc9bb34865328aef9b21 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_main.gff3.gz.tbi +4f99c01eb65d67c16bc96b8cba674f5a Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.gene_models_mrna.gff3.gz +ba81ed598110db63030b56942f3a94bb Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.legfed_v1_0.M65K.gfa.tsv.gz +ad4b9dcbe85fc79ce821711ec68cca45 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.mrna.fna.gz +b6099d48cfea6adff179faf811142097 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.mrna.fna.gz.fai +dd0d4664649fc33fc260bf8c673937c9 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.mrna.fna.gz.gzi +baec66987b564af1c44a5acf77d01fd7 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.protein.faa.gz +a7f8ec96adf57dd79b9b9be080f4d52a Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.protein.faa.gz.fai +53f1133c9e2b92c0629ff727895a4463 Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.protein.faa.gz.gzi +54f6fca2ee765ad281c5e4f39b298cee Vigna/radiata/annotations/VC1973A.gnm6.ann1.M1Qs/vigra.VC1973A.gnm6.ann1.M1Qs.scaffolds_in_pchr.gff3.gz diff --git a/Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/CHECKSUM.VC1973A.gnm7.ann1.RWBG.md5 b/Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/CHECKSUM.VC1973A.gnm7.ann1.RWBG.md5 index 29860e73..09419843 100644 --- a/Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/CHECKSUM.VC1973A.gnm7.ann1.RWBG.md5 +++ b/Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/CHECKSUM.VC1973A.gnm7.ann1.RWBG.md5 @@ -1,24 +1,22 @@ -2c063f1c863f6b97dc69aad3019bd727 ./vigra.VC1973A.gnm7.ann1.RWBG.protein.faa.gz.fai -f5271471e7ffe8b8869aaf82a6e74161 ./vigra.VC1973A.gnm7.ann1.RWBG.iprscan.gff3.gz.tbi -c91557e0af630d78a42dce304fa70550 ./README.VC1973A.gnm7.ann1.RWBG.yml -906b717ddaa12b7e0ebb7c8b34bca9a8 ./vigra.VC1973A.gnm7.ann1.RWBG.gene_models_original.gff3.gz -630fdfcf7c39c2f0df611c66cbde5ba5 ./vigra.VC1973A.gnm7.ann1.RWBG.gene_models_main.gff3.gz -d2ff4ac7f1c52ed362d1252a527fb0da ./BUSCO/vigra.VC1973A.gnm7.ann1.RWBG.busco.fabales_odb10.short_summary.json -005c0810ae92759e9f0a8e9635299dcb ./BUSCO/vigra.VC1973A.gnm7.ann1.RWBG.busco.fabales_odb10.full_table.tsv.gz -0f19cf2269efeb4dd923801a36d4c54a ./BUSCO/vigra.VC1973A.gnm7.ann1.RWBG.busco.fabales_odb10.short_summary.txt -eddb6240c883006b55abae8ef4551b3c ./vigra.VC1973A.gnm7.ann1.RWBG.mrna.fna.gz.gzi -e26560b02536ec878b825304522653d8 ./MANIFEST.VC1973A.gnm7.ann1.RWBG.descriptions.yml -e99d4aa9bb7e882f99b17bedba542fbd ./vigra.VC1973A.gnm7.ann1.RWBG.gene_models_main.gff3.gz.tbi -0d1a23e9be74ee9864dbe7ac39e1b1af ./vigra.VC1973A.gnm7.ann1.RWBG.cds.fna.gz -79f86614975384ba02c5953f5321cb2f ./vigra.VC1973A.gnm7.ann1.RWBG.cds.fna.gz.fai -78953cb269ffd192e20d4730cca75bad ./vigra.VC1973A.gnm7.ann1.RWBG.cds.fna.gz.gzi -218c34b875492c78c65f6253f3a357ee ./vigra.VC1973A.gnm7.ann1.RWBG.iprscan.gff3.gz -18192497c85345646cf35183c37bdf79 ./vigra.VC1973A.gnm7.ann1.RWBG.cds.bed.gz -284c318fc440332638eea0723a8e620a ./vigra.VC1973A.gnm7.ann1.RWBG.protein.faa.gz -0a3b7ca4d0e5586bec949ef15fc45fcd ./CHANGES.VC1973A.gnm7.ann1.RWBG.txt -a61068f651525e308415d9b51b6f9d4c ./vigra.VC1973A.gnm7.ann1.RWBG.mrna.fna.gz.fai -cea9489eaef04ddb3939196568633696 ./vigra.VC1973A.gnm7.ann1.RWBG.mrna.fna.gz -4cc0b831e9db487d784a2ffe5de93c4e ./MANIFEST.VC1973A.gnm7.ann1.RWBG.correspondence.yml -f8e2e271005feced4a148f0233c8b65b ./vigra.VC1973A.gnm7.ann1.RWBG.featid_map.tsv.gz -db31c8e3cc0345663a14d261999e3ecc ./vigra.VC1973A.gnm7.ann1.RWBG.protein.faa.gz.gzi -7e188625ece3b0b17c7388aaf5072975 ./vigra.VC1973A.gnm7.ann1.RWBG.legfed_v1_0.M65K.gfa.tsv.gz +0a3b7ca4d0e5586bec949ef15fc45fcd Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/CHANGES.VC1973A.gnm7.ann1.RWBG.txt +4cc0b831e9db487d784a2ffe5de93c4e Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/MANIFEST.VC1973A.gnm7.ann1.RWBG.correspondence.yml +e26560b02536ec878b825304522653d8 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/MANIFEST.VC1973A.gnm7.ann1.RWBG.descriptions.yml +c91557e0af630d78a42dce304fa70550 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/README.VC1973A.gnm7.ann1.RWBG.yml +0d1a23e9be74ee9864dbe7ac39e1b1af Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.cds.fna.gz +79f86614975384ba02c5953f5321cb2f Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.cds.fna.gz.fai +78953cb269ffd192e20d4730cca75bad Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.cds.fna.gz.gzi +f8e2e271005feced4a148f0233c8b65b Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.featid_map.tsv.gz +7ceb0a390826ddbbef990cd0df3b80e7 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.gene_models_main.bed.gz +4ae7d01d5b3b2f23332b154757cc22f7 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.gene_models_main.bed.gz.tbi +630fdfcf7c39c2f0df611c66cbde5ba5 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.gene_models_main.gff3.gz +e99d4aa9bb7e882f99b17bedba542fbd Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.gene_models_main.gff3.gz.tbi +906b717ddaa12b7e0ebb7c8b34bca9a8 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.gene_models_original.gff3.gz +218c34b875492c78c65f6253f3a357ee Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.iprscan.gff3.gz +f5271471e7ffe8b8869aaf82a6e74161 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.iprscan.gff3.gz.tbi +7e188625ece3b0b17c7388aaf5072975 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.legfed_v1_0.M65K.gfa.tsv.gz +cea9489eaef04ddb3939196568633696 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.mrna.fna.gz +a61068f651525e308415d9b51b6f9d4c Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.mrna.fna.gz.fai +eddb6240c883006b55abae8ef4551b3c Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.mrna.fna.gz.gzi +284c318fc440332638eea0723a8e620a Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.protein.faa.gz +2c063f1c863f6b97dc69aad3019bd727 Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.protein.faa.gz.fai +db31c8e3cc0345663a14d261999e3ecc Vigna/radiata/annotations/VC1973A.gnm7.ann1.RWBG/vigra.VC1973A.gnm7.ann1.RWBG.protein.faa.gz.gzi diff --git a/Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/CHECKSUM.CB5-2.gnm1.ann1.0GKC.md5 b/Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/CHECKSUM.CB5-2.gnm1.ann1.0GKC.md5 index 9334557c..304c3f53 100644 --- a/Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/CHECKSUM.CB5-2.gnm1.ann1.0GKC.md5 +++ b/Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/CHECKSUM.CB5-2.gnm1.ann1.0GKC.md5 @@ -1,29 +1,25 @@ -1c1944f9a9e376cd07cf0e2b4df0f723 ./vigun.CB5-2.gnm1.ann1.0GKC.mrna_primary.fna.gz -a249aca0732c5715b9a6b1a974feb936 ./vigun.CB5-2.gnm1.ann1.0GKC.gene_models_main.gff3.gz.tbi -42bf7a06a7f92a0728b88df925b9d812 ./vigun.CB5-2.gnm1.ann1.0GKC.protein.faa.gz -1b35c43b50a44544fd813f9b4efef353 ./vigun.CB5-2.gnm1.ann1.0GKC.gene_models_main.gff3.gz -e2d6eee023e27d7f94871502fc5c55ba ./vigun.CB5-2.gnm1.ann1.0GKC.legfed_v1_0.M65K.pathway.tsv.gz -e1a33b6ea984ca8722fae074ae4b3cc8 ./BUSCO/vigun.CB5-2.gnm1.ann1.0GKC.busco.fabales_odb10.short_summary.txt -e7b2723590542af5923f0b27cbf296e4 ./BUSCO/vigun.CB5-2.gnm1.ann1.0GKC.busco.fabales_odb10.full_table.tsv.gz -d1a327d109874052d7b380959d001ddc ./BUSCO/vigun.CB5-2.gnm1.ann1.0GKC.busco.fabales_odb10.short_summary.json -f6ca34b6502b9c4b467f76cce2eb76a3 ./vigun.CB5-2.gnm1.ann1.0GKC.cds.fna.gz.gzi -3188f2f9c0f99c99ffbe0f35912f04fa ./vigun.CB5-2.gnm1.ann1.0GKC.cds_primary.fna.gz -651cf606e88e890f2ec1b062e1275937 ./vigun.CB5-2.gnm1.ann1.0GKC.cds_primary.fna.gz.fai -a7ef950f6a1173cf9667058674dcd0a4 ./vigun.CB5-2.gnm1.ann1.0GKC.protein.faa.gz.fai -d4486f09aa82908ab706978cc790f635 ./vigun.CB5-2.gnm1.ann1.0GKC.cds.bed.gz.tbi -323521cc69cf9b55b84583b0d1bb7316 ./README.CB5-2.gnm1.ann1.0GKC.yml -6082da6f0254a7b11a60a44aed0465e6 ./vigun.CB5-2.gnm1.ann1.0GKC.mrna_primary.fna.gz.fai -1daa55e56f4d5090378e0402035d16cd ./vigun.CB5-2.gnm1.ann1.0GKC.mrna.fna.gz.fai -9c7d6661ec1cda6e1ad0c5126df524ac ./vigun.CB5-2.gnm1.ann1.0GKC.protein_primary.faa.gz.gzi -250c17d143124bbebb075b5d79dc1350 ./vigun.CB5-2.gnm1.ann1.0GKC.cds.bed.gz -6bd7d3c583a330367b1169f57ccda2dd ./vigun.CB5-2.gnm1.ann1.0GKC.mrna.fna.gz.gzi -4504016cf7fbff2a2d3ab2321ef5490b ./vigun.CB5-2.gnm1.ann1.0GKC.mrna_primary.fna.gz.gzi -36fe893411e780a9d9a4ec6173c6c8cf ./vigun.CB5-2.gnm1.ann1.0GKC.protein_primary.faa.gz.fai -1f7220cd7435b9fe5ef9f9b88930bf56 ./vigun.CB5-2.gnm1.ann1.0GKC.cds_primary.fna.gz.gzi -56dfc3b2d129fcefe206f648b20d84e9 ./vigun.CB5-2.gnm1.ann1.0GKC.protein.faa.gz.gzi -71f83b1ae99ff75f199806561d821200 ./vigun.CB5-2.gnm1.ann1.0GKC.protein_primary.faa.gz -7d805ea73927a135662e1b0bd5297f86 ./vigun.CB5-2.gnm1.ann1.0GKC.mrna.fna.gz -9bbff65172df9cd3923102897b77e80f ./vigun.CB5-2.gnm1.ann1.0GKC.cds.fna.gz -77370c4b56d0309e53c79e574acba979 ./vigun.CB5-2.gnm1.ann1.0GKC.legfed_v1_0.M65K.gfa.tsv.gz -a6b5bdf1dda391a249c393b6ea9179bc ./vigun.CB5-2.gnm1.ann1.0GKC.cds.fna.gz.fai -005c83489c24d2582ab38b06bd294b83 ./CHANGES.CB5-2.gnm1.ann1.0GKC.yml +005c83489c24d2582ab38b06bd294b83 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/CHANGES.CB5-2.gnm1.ann1.0GKC.txt +323521cc69cf9b55b84583b0d1bb7316 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/README.CB5-2.gnm1.ann1.0GKC.yml +3188f2f9c0f99c99ffbe0f35912f04fa Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.cds_primary.fna.gz +651cf606e88e890f2ec1b062e1275937 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.cds_primary.fna.gz.fai +1f7220cd7435b9fe5ef9f9b88930bf56 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.cds_primary.fna.gz.gzi +9bbff65172df9cd3923102897b77e80f Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.cds.fna.gz +a6b5bdf1dda391a249c393b6ea9179bc Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.cds.fna.gz.fai +f6ca34b6502b9c4b467f76cce2eb76a3 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.cds.fna.gz.gzi +d7bc82f8d77a6895493e0b28233b8102 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.gene_models_main.bed.gz +6d646e56d30798b9351a4099957d87c9 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.gene_models_main.bed.gz.tbi +1b35c43b50a44544fd813f9b4efef353 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.gene_models_main.gff3.gz +a249aca0732c5715b9a6b1a974feb936 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.gene_models_main.gff3.gz.tbi +77370c4b56d0309e53c79e574acba979 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.legfed_v1_0.M65K.gfa.tsv.gz +1c1944f9a9e376cd07cf0e2b4df0f723 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.mrna_primary.fna.gz +6082da6f0254a7b11a60a44aed0465e6 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.mrna_primary.fna.gz.fai +4504016cf7fbff2a2d3ab2321ef5490b Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.mrna_primary.fna.gz.gzi +7d805ea73927a135662e1b0bd5297f86 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.mrna.fna.gz +1daa55e56f4d5090378e0402035d16cd Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.mrna.fna.gz.fai +6bd7d3c583a330367b1169f57ccda2dd Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.mrna.fna.gz.gzi +71f83b1ae99ff75f199806561d821200 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.protein_primary.faa.gz +36fe893411e780a9d9a4ec6173c6c8cf Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.protein_primary.faa.gz.fai +9c7d6661ec1cda6e1ad0c5126df524ac Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.protein_primary.faa.gz.gzi +42bf7a06a7f92a0728b88df925b9d812 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.protein.faa.gz +a7ef950f6a1173cf9667058674dcd0a4 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.protein.faa.gz.fai +56dfc3b2d129fcefe206f648b20d84e9 Vigna/unguiculata/annotations/CB5-2.gnm1.ann1.0GKC/vigun.CB5-2.gnm1.ann1.0GKC.protein.faa.gz.gzi diff --git a/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/CHECKSUM.IT97K-499-35.gnm1.ann1.zb5D.md5 b/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/CHECKSUM.IT97K-499-35.gnm1.ann1.zb5D.md5 index 8038e05f..d6ac7a77 100644 --- a/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/CHECKSUM.IT97K-499-35.gnm1.ann1.zb5D.md5 +++ b/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/CHECKSUM.IT97K-499-35.gnm1.ann1.zb5D.md5 @@ -1,37 +1,31 @@ -766efb27d1a66ae0ba787f237aa9ce90 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.protein_primary.faa.gz.fai -28fe728ee185e358afe0156fa6393d3f ./vigun.IT97K-499-35.gnm1.ann1.zb5D.cds.bed.gz.tbi -a25e7a4adce25d73114190f76abe8831 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna_primary.fna.gz.gzi -6081703fd1e23d70e41642fec528a5ea ./vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna.fna.gz.gzi -1abe8951b4787b21b8c535480a8a8ad8 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.legfed_v1_0.M65K.gfa.tsv.gz -e8faa761f98a636fe96cf2f24f1e1154 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.cds_primary.fna.gz -0f4075242f46ea398b66476981232e38 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.defline.txt.gz -16ac9ca6a0b23b4917aee93bc49df827 ./busco/vigun.IT97K-499-35.gnm1.ann1.zb5D.protein.faa.gz_busco/short_summary.specific.embryophyta_odb10.vigun.IT97K-499-35.gnm1.ann1.zb5D.protein.faa.gz_busco.txt -bd4a126379766b8b93737e98a85e3aa2 ./busco/vigun.IT97K-499-35.gnm1.ann1.zb5D.protein_primaryTranscript.faa.gz_busco/short_summary.specific.embryophyta_odb10.vigun.IT97K-499-35.gnm1.ann1.zb5D.protein_primaryTranscript.faa.gz_busco.txt -8009a2275028abca6117f1830eafa7aa ./MANIFEST.IT97K-499-35.gnm1.ann1.zb5D.descriptions.yml -141f257cc0c63237dcd01bd1258e0df0 ./README.IT97K-499-35.gnm1.ann1.zb5D.yml -1879b5699756212e7969690d07b0e67c ./vigun.IT97K-499-35.gnm1.ann1.zb5D.cds.fna.gz.gzi -f31c6871962e77b8dffab9edf7e7e065 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.protein.faa.gz.fai -819064021b1370447aec6a4f1a806681 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.protein.faa.gz -d56617a6d6697002fd5d5c5da155f4ed ./vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models.gff3.gz -5a3d97086a45b708b790be8e18ca6e82 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.protein_primary.faa.gz -aeb6958951d3d9d26e436aa30bd71b23 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.cds.fna.gz -c2fdeba6217ef9aa86e5540b6378f7f4 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.cds_primary.fna.gz.gzi -7879c2431cda94f5f530adf13af2646d ./BUSCO/vigun.IT97K-499-35.gnm1.ann1.zb5D.busco.fabales_odb10.short_summary.txt -64df02b110ac43ff0a44b55aef387ee6 ./BUSCO/vigun.IT97K-499-35.gnm1.ann1.zb5D.busco.fabales_odb10.short_summary.json -883298e236ff320be78cad40610ff75b ./BUSCO/vigun.IT97K-499-35.gnm1.ann1.zb5D.busco.fabales_odb10.full_table.tsv.gz -9ba75f0cde0231e31ecee2a4d2418c89 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.annotation_info.txt.gz -125cb3cbbf07800c0d271172a1c330ba ./vigun.IT97K-499-35.gnm1.ann1.zb5D.legfed_v1_0.M65K.pathway.tsv.gz -35cb6e49fc5834dc91e41ee515860f12 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.cds_primary.fna.gz.fai -7754456de1833991052c2f5cc13e8b2f ./CHANGES.IT97K-499-35.gnm1.ann1.zb5D.txt -1ef2de725286f823cd4f1ebf25efe949 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models_main.gff3.gz -d19d8985e5e52277bd2f953342905b63 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.repeatmasking.gff3.gz -8a4ac209461742ce95fa66516edf6bbd ./vigun.IT97K-499-35.gnm1.ann1.zb5D.cds.fna.gz.fai -098a0f40623c5ada75fcd287feb69804 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.protein.faa.gz.gzi -56c64cd8ef9a9ac02863aad060ba9631 ./MANIFEST.IT97K-499-35.gnm1.ann1.zb5D.correspondence.yml -edbbfb37bdbac3f2896977c2f602286b ./vigun.IT97K-499-35.gnm1.ann1.zb5D.cds.bed.gz -540aa5657f796c3dfe02eef218b5b70f ./vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna.fna.gz -b73d632f1a2710eeb9ac2953e9cc87fd ./vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna_primary.fna.gz.fai -3c07c6013315aabeeef85042874a5c4e ./vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna.fna.gz.fai -c87c3a301774003891544a5e15cea6d3 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna_primary.fna.gz -c205b41c9f5acbe9486d291a04947d26 ./vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models_main.gff3.gz.tbi -4ac4b29c16efa2c03b4f18c1bd4a810d ./vigun.IT97K-499-35.gnm1.ann1.zb5D.protein_primary.faa.gz.gzi +7754456de1833991052c2f5cc13e8b2f Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/CHANGES.IT97K-499-35.gnm1.ann1.zb5D.txt +56c64cd8ef9a9ac02863aad060ba9631 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/MANIFEST.IT97K-499-35.gnm1.ann1.zb5D.correspondence.yml +8009a2275028abca6117f1830eafa7aa Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/MANIFEST.IT97K-499-35.gnm1.ann1.zb5D.descriptions.yml +141f257cc0c63237dcd01bd1258e0df0 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/README.IT97K-499-35.gnm1.ann1.zb5D.yml +9ba75f0cde0231e31ecee2a4d2418c89 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.annotation_info.txt.gz +e8faa761f98a636fe96cf2f24f1e1154 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.cds_primary.fna.gz +35cb6e49fc5834dc91e41ee515860f12 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.cds_primary.fna.gz.fai +c2fdeba6217ef9aa86e5540b6378f7f4 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.cds_primary.fna.gz.gzi +aeb6958951d3d9d26e436aa30bd71b23 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.cds.fna.gz +8a4ac209461742ce95fa66516edf6bbd Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.cds.fna.gz.fai +1879b5699756212e7969690d07b0e67c Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.cds.fna.gz.gzi +0f4075242f46ea398b66476981232e38 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.defline.txt.gz +e2bd6e728c40cda6eaabd8fa31654e60 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models_main.bed.gz +cebd1bb325d717c686e497aa8bf5305b Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models_main.bed.gz.tbi +1ef2de725286f823cd4f1ebf25efe949 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models_main.gff3.gz +c205b41c9f5acbe9486d291a04947d26 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models_main.gff3.gz.tbi +d56617a6d6697002fd5d5c5da155f4ed Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.gene_models.gff3.gz +1abe8951b4787b21b8c535480a8a8ad8 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.legfed_v1_0.M65K.gfa.tsv.gz +c87c3a301774003891544a5e15cea6d3 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna_primary.fna.gz +b73d632f1a2710eeb9ac2953e9cc87fd Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna_primary.fna.gz.fai +a25e7a4adce25d73114190f76abe8831 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna_primary.fna.gz.gzi +540aa5657f796c3dfe02eef218b5b70f Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna.fna.gz +3c07c6013315aabeeef85042874a5c4e Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna.fna.gz.fai +6081703fd1e23d70e41642fec528a5ea Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.mrna.fna.gz.gzi +5a3d97086a45b708b790be8e18ca6e82 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.protein_primary.faa.gz +766efb27d1a66ae0ba787f237aa9ce90 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.protein_primary.faa.gz.fai +4ac4b29c16efa2c03b4f18c1bd4a810d Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.protein_primary.faa.gz.gzi +819064021b1370447aec6a4f1a806681 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.protein.faa.gz +f31c6871962e77b8dffab9edf7e7e065 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.protein.faa.gz.fai +098a0f40623c5ada75fcd287feb69804 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.protein.faa.gz.gzi +d19d8985e5e52277bd2f953342905b63 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann1.zb5D/vigun.IT97K-499-35.gnm1.ann1.zb5D.repeatmasking.gff3.gz diff --git a/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/CHECKSUM.IT97K-499-35.gnm1.ann2.FD7K.md5 b/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/CHECKSUM.IT97K-499-35.gnm1.ann2.FD7K.md5 index 72a4fab5..c48e0357 100644 --- a/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/CHECKSUM.IT97K-499-35.gnm1.ann2.FD7K.md5 +++ b/Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/CHECKSUM.IT97K-499-35.gnm1.ann2.FD7K.md5 @@ -1,28 +1,25 @@ -919946bff888c89203628cd98823d81e ./vigun.IT97K-499-35.gnm1.ann2.FD7K.protein_primary.faa.gz.gzi -701ca7b8faaf3433f357e2b76597bf61 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.mrna.fna.gz.gzi -d16ba1c29b8ecd364e963c4995d805ed ./BUSCO/vigun.IT97K-499-35.gnm1.ann2.FD7K.busco.fabales_odb10.short_summary.json -68f322a8827e1f9aadb83439d00c4d98 ./BUSCO/vigun.IT97K-499-35.gnm1.ann2.FD7K.busco.fabales_odb10.full_table.tsv.gz -593e50097f8d6ebc1748e87d4283a5b5 ./BUSCO/vigun.IT97K-499-35.gnm1.ann2.FD7K.busco.fabales_odb10.short_summary.txt -e72945013a78cd5efaa65e8b4aba12e7 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.cds.bed.gz.tbi -0f610b289fa60b0e27f7153c47bf4e4c ./vigun.IT97K-499-35.gnm1.ann2.FD7K.mrna_primary.fna.gz.gzi -e6c365e6baaf45dff81ba0e21c3564f0 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.mrna_primary.fna.gz -a73216d1c71a9b11e9795bc4778807af ./vigun.IT97K-499-35.gnm1.ann2.FD7K.cds.fna.gz.gzi -07e189a7b20b7c895c7378adba059a6d ./vigun.IT97K-499-35.gnm1.ann2.FD7K.cds.bed.gz -6770d71a33ecb40e1ceda4e0434c3229 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.protein.faa.gz -10784408ac2356e3137680b0ae4d2996 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.cds_primary.fna.gz.gzi -621c4b274d1463f999c238998dd78fd1 ./CHANGES.IT97K-499-35.gnm1.ann2.FD7K.txt -f9ae4868fe4ce304c908d4cd3d3b5514 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.protein_primary.faa.gz -d93697f2a469ee8ef341ca227abf55a6 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.protein.faa.gz.gzi -a60d7764491e6c3dee914a8608643ba2 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.cds_primary.fna.gz.fai -780d853b212c87238a4d14550c134a5c ./README.IT97K-499-35.gnm1.ann2.FD7K.yml -6a7e73abf62b41f4c1060a89fe0de6a3 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.protein.faa.gz.fai -4a3b9fa04d4bf7c3ca31592f463cee43 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.cds.fna.gz.fai -713fd43fc5e73cc7d050e04f952d277c ./vigun.IT97K-499-35.gnm1.ann2.FD7K.cds.fna.gz -34f25879a152f4a871c76697033c3590 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.gene_models_main.gff3.gz.tbi -0a6678170e0206f6ce35efaeecae5d9d ./vigun.IT97K-499-35.gnm1.ann2.FD7K.mrna_primary.fna.gz.fai -4b0b9d6174b9b76509aea2f6b0ec369b ./vigun.IT97K-499-35.gnm1.ann2.FD7K.mrna.fna.gz -6e939e5b33168dccdd8f52230b7b1503 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.cds_primary.fna.gz -2e59920c00a103de9ecec1e9b40ca1c6 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.mrna.fna.gz.fai -8e3dc278c86f8a63fd0006a6f3bd75a7 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.legfed_v1_0.M65K.gfa.tsv.gz -ff79a871e693d8c0cf9de6ebb61b5080 ./vigun.IT97K-499-35.gnm1.ann2.FD7K.protein_primary.faa.gz.fai -9df856d7b729c2be24431bb0b83306da ./vigun.IT97K-499-35.gnm1.ann2.FD7K.gene_models_main.gff3.gz +621c4b274d1463f999c238998dd78fd1 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/CHANGES.IT97K-499-35.gnm1.ann2.FD7K.txt +780d853b212c87238a4d14550c134a5c Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/README.IT97K-499-35.gnm1.ann2.FD7K.yml +6e939e5b33168dccdd8f52230b7b1503 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.cds_primary.fna.gz +a60d7764491e6c3dee914a8608643ba2 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.cds_primary.fna.gz.fai +10784408ac2356e3137680b0ae4d2996 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.cds_primary.fna.gz.gzi +713fd43fc5e73cc7d050e04f952d277c Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.cds.fna.gz +4a3b9fa04d4bf7c3ca31592f463cee43 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.cds.fna.gz.fai +a73216d1c71a9b11e9795bc4778807af Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.cds.fna.gz.gzi +b12cf3e9498b26406ed1cdc124892ea4 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.gene_models_main.bed.gz +47b5c3fdbe5fbf569a1113d1e732463d Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.gene_models_main.bed.gz.tbi +9df856d7b729c2be24431bb0b83306da Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.gene_models_main.gff3.gz 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Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.mrna.fna.gz.fai +701ca7b8faaf3433f357e2b76597bf61 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.mrna.fna.gz.gzi +f9ae4868fe4ce304c908d4cd3d3b5514 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.protein_primary.faa.gz +ff79a871e693d8c0cf9de6ebb61b5080 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.protein_primary.faa.gz.fai +919946bff888c89203628cd98823d81e Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.protein_primary.faa.gz.gzi +6770d71a33ecb40e1ceda4e0434c3229 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.protein.faa.gz +6a7e73abf62b41f4c1060a89fe0de6a3 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.protein.faa.gz.fai +d93697f2a469ee8ef341ca227abf55a6 Vigna/unguiculata/annotations/IT97K-499-35.gnm1.ann2.FD7K/vigun.IT97K-499-35.gnm1.ann2.FD7K.protein.faa.gz.gzi diff --git a/Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/CHECKSUM.Sanzi.gnm1.ann1.HFH8.md5 b/Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/CHECKSUM.Sanzi.gnm1.ann1.HFH8.md5 index b701480b..9f783b12 100644 --- a/Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/CHECKSUM.Sanzi.gnm1.ann1.HFH8.md5 +++ b/Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/CHECKSUM.Sanzi.gnm1.ann1.HFH8.md5 @@ -1,29 +1,25 @@ -5107ce621fed84f4d82cbe9513db2074 ./vigun.Sanzi.gnm1.ann1.HFH8.mrna.fna.gz -ad7b0eee8e2221c1bfb8c52cf904437c ./vigun.Sanzi.gnm1.ann1.HFH8.gene_models_main.gff3.gz.tbi -7b446ed479ea75b6efb310ee51aff5bc ./vigun.Sanzi.gnm1.ann1.HFH8.mrna_primary.fna.gz.gzi -a96df2fb113a318c1176b6bb0ccc7758 ./vigun.Sanzi.gnm1.ann1.HFH8.legfed_v1_0.M65K.pathway.tsv.gz -a8b725dc58bb7baa4dec58f68d955832 ./vigun.Sanzi.gnm1.ann1.HFH8.cds.bed.gz.tbi -f224b3ed151153c85181c2cab24b9926 ./vigun.Sanzi.gnm1.ann1.HFH8.mrna.fna.gz.fai -850575d7c50150a43c51fccdeb4e010e ./vigun.Sanzi.gnm1.ann1.HFH8.cds.bed.gz -2dc181c6c56d30b03836113dc14f3333 ./vigun.Sanzi.gnm1.ann1.HFH8.protein.faa.gz -0259d22e3def2d362fb1dfc4e84b8ea3 ./vigun.Sanzi.gnm1.ann1.HFH8.protein.faa.gz.gzi -a2c45efe8858297f803d2ccba2eabb0c ./vigun.Sanzi.gnm1.ann1.HFH8.protein_primary.faa.gz.fai -32a5bf900f633ba4b67ee1bde654b74c ./vigun.Sanzi.gnm1.ann1.HFH8.legfed_v1_0.M65K.gfa.tsv.gz -84159533c5a87ad650870ea939cf54ce ./vigun.Sanzi.gnm1.ann1.HFH8.protein_primary.faa.gz -77f4a21d3125063505e016293be88328 ./vigun.Sanzi.gnm1.ann1.HFH8.cds.fna.gz.gzi -788e7be142211bf1ba3253e5e179e4dc ./vigun.Sanzi.gnm1.ann1.HFH8.cds_primary.fna.gz.gzi -8f9edabee1739536cec716195e4951b6 ./vigun.Sanzi.gnm1.ann1.HFH8.cds.fna.gz -81a0bef07686892ef6e719dfd2c1717d ./vigun.Sanzi.gnm1.ann1.HFH8.mrna_primary.fna.gz -eee5ed2f66df44506cb2a5ca0c929941 ./vigun.Sanzi.gnm1.ann1.HFH8.protein_primary.faa.gz.gzi -2231bdd405955595e464c9d51c1ef1fa ./vigun.Sanzi.gnm1.ann1.HFH8.gene_models_main.gff3.gz -c1b39c01637f56580de1ef6cf3e561d7 ./vigun.Sanzi.gnm1.ann1.HFH8.cds_primary.fna.gz.fai -30c1116b8bdca975149e25a7a8969923 ./vigun.Sanzi.gnm1.ann1.HFH8.cds.fna.gz.fai -2761afc3963c9ff983435e451d7b60e2 ./vigun.Sanzi.gnm1.ann1.HFH8.protein.faa.gz.fai -2e587278c4832c9b12410f98fb75789b ./README.Sanzi.gnm1.ann1.HFH8.yml -7852623ff22f40da17440f29715b7972 ./vigun.Sanzi.gnm1.ann1.HFH8.cds_primary.fna.gz -13b68dec6189f9fea6f8460bb6d805c0 ./vigun.Sanzi.gnm1.ann1.HFH8.mrna.fna.gz.gzi -15e328332270b562da20b3d21dc01acf ./vigun.Sanzi.gnm1.ann1.HFH8.mrna_primary.fna.gz.fai -621c4b274d1463f999c238998dd78fd1 ./CHANGES.Sanzi.gnm1.ann1.HFH8.txt -a84b489cae267566a37fcd2104e0d893 ./BUSCO/vigun.Sanzi.gnm1.ann1.HFH8.busco.fabales_odb10.full_table.tsv.gz -7fe6197e11fb41700c6329e96b054628 ./BUSCO/vigun.Sanzi.gnm1.ann1.HFH8.busco.fabales_odb10.short_summary.json -9c307e3167d0a033fe47701ff6b22fc6 ./BUSCO/vigun.Sanzi.gnm1.ann1.HFH8.busco.fabales_odb10.short_summary.txt +621c4b274d1463f999c238998dd78fd1 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/CHANGES.Sanzi.gnm1.ann1.HFH8.txt +2e587278c4832c9b12410f98fb75789b Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/README.Sanzi.gnm1.ann1.HFH8.yml +7852623ff22f40da17440f29715b7972 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.cds_primary.fna.gz +c1b39c01637f56580de1ef6cf3e561d7 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.cds_primary.fna.gz.fai +788e7be142211bf1ba3253e5e179e4dc Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.cds_primary.fna.gz.gzi +8f9edabee1739536cec716195e4951b6 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.cds.fna.gz +30c1116b8bdca975149e25a7a8969923 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.cds.fna.gz.fai +77f4a21d3125063505e016293be88328 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.cds.fna.gz.gzi +556f236e8430553908fad6028ee1186e Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.gene_models_main.bed.gz +292c30186b59852bcb2d077762aca57b Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.gene_models_main.bed.gz.tbi +2231bdd405955595e464c9d51c1ef1fa Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.gene_models_main.gff3.gz +ad7b0eee8e2221c1bfb8c52cf904437c Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.gene_models_main.gff3.gz.tbi +32a5bf900f633ba4b67ee1bde654b74c Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.legfed_v1_0.M65K.gfa.tsv.gz +81a0bef07686892ef6e719dfd2c1717d Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.mrna_primary.fna.gz +15e328332270b562da20b3d21dc01acf Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.mrna_primary.fna.gz.fai +7b446ed479ea75b6efb310ee51aff5bc Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.mrna_primary.fna.gz.gzi +5107ce621fed84f4d82cbe9513db2074 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.mrna.fna.gz +f224b3ed151153c85181c2cab24b9926 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.mrna.fna.gz.fai +13b68dec6189f9fea6f8460bb6d805c0 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.mrna.fna.gz.gzi +84159533c5a87ad650870ea939cf54ce Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.protein_primary.faa.gz +a2c45efe8858297f803d2ccba2eabb0c Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.protein_primary.faa.gz.fai +eee5ed2f66df44506cb2a5ca0c929941 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.protein_primary.faa.gz.gzi +2dc181c6c56d30b03836113dc14f3333 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.protein.faa.gz +2761afc3963c9ff983435e451d7b60e2 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.protein.faa.gz.fai +0259d22e3def2d362fb1dfc4e84b8ea3 Vigna/unguiculata/annotations/Sanzi.gnm1.ann1.HFH8/vigun.Sanzi.gnm1.ann1.HFH8.protein.faa.gz.gzi diff --git a/Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/CHECKSUM.Suvita2.gnm1.ann1.1PF6.md5 b/Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/CHECKSUM.Suvita2.gnm1.ann1.1PF6.md5 index 06b57285..623ab9e3 100644 --- a/Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/CHECKSUM.Suvita2.gnm1.ann1.1PF6.md5 +++ b/Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/CHECKSUM.Suvita2.gnm1.ann1.1PF6.md5 @@ -1,29 +1,25 @@ -ce376d7e96fffd93143cdc65b85b76fc ./vigun.Suvita2.gnm1.ann1.1PF6.cds.bed.gz.tbi -b5288fffa2ec47c546ce36491875bf1a ./vigun.Suvita2.gnm1.ann1.1PF6.cds.fna.gz -6c6b9cbdca57879578a6e6510d3ae963 ./vigun.Suvita2.gnm1.ann1.1PF6.protein.faa.gz.fai -75390f2708a9f54fa06f2fb745cf662a ./vigun.Suvita2.gnm1.ann1.1PF6.legfed_v1_0.M65K.gfa.tsv.gz -5b1b1048278a04b75feabc0d642de993 ./vigun.Suvita2.gnm1.ann1.1PF6.cds_primary.fna.gz -714ee6a2645df21471bc6907bcc920f5 ./vigun.Suvita2.gnm1.ann1.1PF6.cds.fna.gz.gzi -8b87ba841171abe7eef1965893d87335 ./BUSCO/vigun.Suvita2.gnm1.ann1.1PF6.busco.fabales_odb10.full_table.tsv.gz -fc2ca5ae82a4d9f4b9e8378f0951777f ./BUSCO/vigun.Suvita2.gnm1.ann1.1PF6.busco.fabales_odb10.short_summary.txt -0e05badaa42a9544925ccf0efd563a40 ./BUSCO/vigun.Suvita2.gnm1.ann1.1PF6.busco.fabales_odb10.short_summary.json -2bcc7c690086d7986be81cf66048541d ./vigun.Suvita2.gnm1.ann1.1PF6.protein.faa.gz -52153cb8b14e50411bc91fcf07a031dc ./vigun.Suvita2.gnm1.ann1.1PF6.cds_primary.fna.gz.fai -bc72e58b627148fd95d9fe9e026dfe1b ./vigun.Suvita2.gnm1.ann1.1PF6.mrna.fna.gz.gzi -621c4b274d1463f999c238998dd78fd1 ./CHANGES.Suvita2.gnm1.ann1.1PF6.txt -ac0afb663fd923e97e7e883c3c14e839 ./vigun.Suvita2.gnm1.ann1.1PF6.mrna_primary.fna.gz -604e54c75f90a86cac58ab6ab2f50091 ./vigun.Suvita2.gnm1.ann1.1PF6.mrna_primary.fna.gz.fai -2bd78e145936e615bf7c8a996b1496a0 ./vigun.Suvita2.gnm1.ann1.1PF6.protein_primary.faa.gz.fai -e6d42d93fe93ee3f3649ed8552628e50 ./vigun.Suvita2.gnm1.ann1.1PF6.legfed_v1_0.M65K.pathway.tsv.gz -e71cd85fa7509766da238cb491390b1b ./vigun.Suvita2.gnm1.ann1.1PF6.mrna.fna.gz.fai -efde6543f031a425b35d3b10519fdc8e ./vigun.Suvita2.gnm1.ann1.1PF6.mrna_primary.fna.gz.gzi -b5c67310f8b0adca4ea31cb8450b0345 ./vigun.Suvita2.gnm1.ann1.1PF6.protein_primary.faa.gz.gzi -b801b64c402769f6a423748e9f81f7d1 ./vigun.Suvita2.gnm1.ann1.1PF6.protein_primary.faa.gz -2c0e7db968b1f1252c6b03d4f5c25025 ./vigun.Suvita2.gnm1.ann1.1PF6.cds_primary.fna.gz.gzi -b5a471418fd76508e0e779fd778d075a ./README.Suvita2.gnm1.ann1.1PF6.yml -6a8d9d0d668953a14ef34a91817d310d ./vigun.Suvita2.gnm1.ann1.1PF6.cds.fna.gz.fai -ecdd7caa2f706f54340170e585453a2b ./vigun.Suvita2.gnm1.ann1.1PF6.mrna.fna.gz -eb9a6b31179e9ba9a6b1e1cc7a405b16 ./vigun.Suvita2.gnm1.ann1.1PF6.gene_models_main.gff3.gz.tbi -bb82b0f2405c3e6ab7d0f4f322e09f2a ./vigun.Suvita2.gnm1.ann1.1PF6.gene_models_main.gff3.gz -fd23b2a2b607b612ebce8212193369bd ./vigun.Suvita2.gnm1.ann1.1PF6.cds.bed.gz -0eeac0bb313899b25788eca1a82d9676 ./vigun.Suvita2.gnm1.ann1.1PF6.protein.faa.gz.gzi +621c4b274d1463f999c238998dd78fd1 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/CHANGES.Suvita2.gnm1.ann1.1PF6.txt +b5a471418fd76508e0e779fd778d075a Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/README.Suvita2.gnm1.ann1.1PF6.yml +5b1b1048278a04b75feabc0d642de993 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.cds_primary.fna.gz +52153cb8b14e50411bc91fcf07a031dc Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.cds_primary.fna.gz.fai +2c0e7db968b1f1252c6b03d4f5c25025 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.cds_primary.fna.gz.gzi +b5288fffa2ec47c546ce36491875bf1a Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.cds.fna.gz +6a8d9d0d668953a14ef34a91817d310d Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.cds.fna.gz.fai +714ee6a2645df21471bc6907bcc920f5 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.cds.fna.gz.gzi +5dcea10a7adf5fb8dec75d727df85e9d Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.gene_models_main.bed.gz +4cfdaabb518ce8d31d0e313be5842031 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.gene_models_main.bed.gz.tbi +bb82b0f2405c3e6ab7d0f4f322e09f2a Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.gene_models_main.gff3.gz +eb9a6b31179e9ba9a6b1e1cc7a405b16 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.gene_models_main.gff3.gz.tbi +75390f2708a9f54fa06f2fb745cf662a Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.legfed_v1_0.M65K.gfa.tsv.gz +ac0afb663fd923e97e7e883c3c14e839 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.mrna_primary.fna.gz +604e54c75f90a86cac58ab6ab2f50091 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.mrna_primary.fna.gz.fai +efde6543f031a425b35d3b10519fdc8e Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.mrna_primary.fna.gz.gzi +ecdd7caa2f706f54340170e585453a2b Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.mrna.fna.gz +e71cd85fa7509766da238cb491390b1b Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.mrna.fna.gz.fai +bc72e58b627148fd95d9fe9e026dfe1b Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.mrna.fna.gz.gzi +b801b64c402769f6a423748e9f81f7d1 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.protein_primary.faa.gz +2bd78e145936e615bf7c8a996b1496a0 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.protein_primary.faa.gz.fai +b5c67310f8b0adca4ea31cb8450b0345 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.protein_primary.faa.gz.gzi +2bcc7c690086d7986be81cf66048541d Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.protein.faa.gz +6c6b9cbdca57879578a6e6510d3ae963 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.protein.faa.gz.fai +0eeac0bb313899b25788eca1a82d9676 Vigna/unguiculata/annotations/Suvita2.gnm1.ann1.1PF6/vigun.Suvita2.gnm1.ann1.1PF6.protein.faa.gz.gzi diff --git a/Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/CHECKSUM.TZ30.gnm1.ann2.59NL.md5 b/Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/CHECKSUM.TZ30.gnm1.ann2.59NL.md5 index 5710367f..d927bee5 100644 --- a/Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/CHECKSUM.TZ30.gnm1.ann2.59NL.md5 +++ b/Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/CHECKSUM.TZ30.gnm1.ann2.59NL.md5 @@ -1,29 +1,25 @@ -621c4b274d1463f999c238998dd78fd1 ./CHANGES.TZ30.gnm1.ann2.59NL.txt -69450fcd8bf1cf738b71d5965bd54d2c ./vigun.TZ30.gnm1.ann2.59NL.protein.faa.gz.fai -2b8f84de192cdeba259bd68f75ee876e ./vigun.TZ30.gnm1.ann2.59NL.cds.bed.gz.tbi -0891e8f469f1d9d0730d566f57013c9e ./vigun.TZ30.gnm1.ann2.59NL.mrna.fna.gz.fai -f1797ee0ad55c53ad8635955f92462cf ./vigun.TZ30.gnm1.ann2.59NL.cds.fna.gz -c852b4e1f2b0b7850e9e897e35e0ab6b ./vigun.TZ30.gnm1.ann2.59NL.cds_primary.fna.gz.fai -7fd7e2224d7e3616319d154f6022c9a1 ./vigun.TZ30.gnm1.ann2.59NL.mrna_primary.fna.gz.fai -cf4349bb3f08695a41bc55ecf99444b0 ./vigun.TZ30.gnm1.ann2.59NL.cds_primary.fna.gz -cf36bea133e65bf1cd7aebbcf0a16b16 ./vigun.TZ30.gnm1.ann2.59NL.gene_models_main.gff3.gz -44869633f4bf44a1a3152165b4ceef5c ./vigun.TZ30.gnm1.ann2.59NL.cds.fna.gz.gzi -a56a7e2166c8a4e932b3f581b1641c41 ./README.TZ30.gnm1.ann2.59NL.yml -dfa4aa2d08bf5f8ad706b83907e8dca5 ./vigun.TZ30.gnm1.ann2.59NL.protein.faa.gz -cff481666f3347b9ae739026a85d5bb8 ./vigun.TZ30.gnm1.ann2.59NL.protein_primary.faa.gz.fai -073f49c8309749a4490c7bb9969290df ./vigun.TZ30.gnm1.ann2.59NL.legfed_v1_0.M65K.pathway.tsv.gz -89b703ab54c28356fd5cf0ffd54dbc0a ./vigun.TZ30.gnm1.ann2.59NL.mrna_primary.fna.gz -eae0ce7f10719c3df1f1e919202270fc ./BUSCO/vigun.TZ30.gnm1.ann2.59NL.busco.fabales_odb10.short_summary.json -3a5be910c91109ff5871bcd28311df6b ./BUSCO/vigun.TZ30.gnm1.ann2.59NL.busco.fabales_odb10.short_summary.txt -e43e6eb0801eba40095311bdd072d2e6 ./BUSCO/vigun.TZ30.gnm1.ann2.59NL.busco.fabales_odb10.full_table.tsv.gz -73da70f7d9dcb28388b99a331b327b73 ./vigun.TZ30.gnm1.ann2.59NL.protein_primary.faa.gz.gzi -00737cb72cba245bc3481f68f67ac17c ./vigun.TZ30.gnm1.ann2.59NL.gene_models_main.gff3.gz.tbi -de56908bc1123fcaf87aedba44b2c652 ./vigun.TZ30.gnm1.ann2.59NL.cds.fna.gz.fai -3db5e631e147587ef2ab2765b10f903e ./vigun.TZ30.gnm1.ann2.59NL.legfed_v1_0.M65K.gfa.tsv.gz -129ce47bc7d91e4bb01b795b39453c82 ./vigun.TZ30.gnm1.ann2.59NL.mrna_primary.fna.gz.gzi -722906af3690bd096baa1bdc834c6a4d ./vigun.TZ30.gnm1.ann2.59NL.cds_primary.fna.gz.gzi -db8323a6e304fa94374399d54ddbdbb2 ./vigun.TZ30.gnm1.ann2.59NL.protein_primary.faa.gz -d273033e45d420f703d9d5da064c2bd8 ./vigun.TZ30.gnm1.ann2.59NL.mrna.fna.gz.gzi -8d46cd519847afb5300751d87c9b64ff ./vigun.TZ30.gnm1.ann2.59NL.cds.bed.gz -b827cd8ae4d3e55f14ad227e9319295e ./vigun.TZ30.gnm1.ann2.59NL.protein.faa.gz.gzi -688bc6a5fbceb6088141dd9d6fe06bae ./vigun.TZ30.gnm1.ann2.59NL.mrna.fna.gz +621c4b274d1463f999c238998dd78fd1 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/CHANGES.TZ30.gnm1.ann2.59NL.txt +a56a7e2166c8a4e932b3f581b1641c41 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/README.TZ30.gnm1.ann2.59NL.yml +cf4349bb3f08695a41bc55ecf99444b0 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.cds_primary.fna.gz +c852b4e1f2b0b7850e9e897e35e0ab6b Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.cds_primary.fna.gz.fai +722906af3690bd096baa1bdc834c6a4d Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.cds_primary.fna.gz.gzi +f1797ee0ad55c53ad8635955f92462cf Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.cds.fna.gz +de56908bc1123fcaf87aedba44b2c652 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.cds.fna.gz.fai +44869633f4bf44a1a3152165b4ceef5c Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.cds.fna.gz.gzi +184dc6792bba72df0dbaf26fe1475800 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.gene_models_main.bed.gz +c5a8b6866c1db6f62efa8ee705ecb85e Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.gene_models_main.bed.gz.tbi +cf36bea133e65bf1cd7aebbcf0a16b16 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.gene_models_main.gff3.gz +00737cb72cba245bc3481f68f67ac17c Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.gene_models_main.gff3.gz.tbi +3db5e631e147587ef2ab2765b10f903e Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.legfed_v1_0.M65K.gfa.tsv.gz +89b703ab54c28356fd5cf0ffd54dbc0a Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.mrna_primary.fna.gz +7fd7e2224d7e3616319d154f6022c9a1 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.mrna_primary.fna.gz.fai +129ce47bc7d91e4bb01b795b39453c82 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.mrna_primary.fna.gz.gzi +688bc6a5fbceb6088141dd9d6fe06bae Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.mrna.fna.gz +0891e8f469f1d9d0730d566f57013c9e Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.mrna.fna.gz.fai +d273033e45d420f703d9d5da064c2bd8 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.mrna.fna.gz.gzi +db8323a6e304fa94374399d54ddbdbb2 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.protein_primary.faa.gz +cff481666f3347b9ae739026a85d5bb8 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.protein_primary.faa.gz.fai +73da70f7d9dcb28388b99a331b327b73 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.protein_primary.faa.gz.gzi +dfa4aa2d08bf5f8ad706b83907e8dca5 Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.protein.faa.gz +69450fcd8bf1cf738b71d5965bd54d2c Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.protein.faa.gz.fai +b827cd8ae4d3e55f14ad227e9319295e Vigna/unguiculata/annotations/TZ30.gnm1.ann2.59NL/vigun.TZ30.gnm1.ann2.59NL.protein.faa.gz.gzi diff --git a/Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/CHECKSUM.UCR779.gnm1.ann1.VF6G.md5 b/Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/CHECKSUM.UCR779.gnm1.ann1.VF6G.md5 index 0b14adec..12826472 100644 --- a/Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/CHECKSUM.UCR779.gnm1.ann1.VF6G.md5 +++ b/Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/CHECKSUM.UCR779.gnm1.ann1.VF6G.md5 @@ -1,31 +1,25 @@ -a163a19c345b4fd9397e8676ae00d467 ./vigun.UCR779.gnm1.ann1.VF6G.cds.fna.gz.gzi -e7191fa7885802adf2bbcc3e565e0e87 ./vigun.UCR779.gnm1.ann1.VF6G.protein.faa.gz -418a5dc6c168cd5087415a4571b05c8e ./vigun.UCR779.gnm1.ann1.VF6G.cds_primary.fna.gz.fai -69e5a30681b14c86503af8d07bc73339 ./vigun.UCR779.gnm1.ann1.VF6G.mrna.fna.gz.fai -1724f778faae26d469ab158c6e91d2b0 ./vigun.UCR779.gnm1.ann1.VF6G.protein.faa.gz.fai -e1166a0bda966a4909caa84760425b70 ./vigun.UCR779.gnm1.ann1.VF6G.mrna_primary.fna.gz -fb532fec43fdc543d190d9ba7b247d9e ./vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.gff3.gz -4d39a059d5691d825cac93cdef1f40db ./vigun.UCR779.gnm1.ann1.VF6G.protein_primary.faa.gz.fai -328bdd4e617424b7e498a09f4ccf3e25 ./vigun.UCR779.gnm1.ann1.VF6G.cds.fna.gz -8b23c3461b3a85a6c64439e1ebd90c41 ./vigun.UCR779.gnm1.ann1.VF6G.cds.bed.gz.tbi -e657e4f0abf0345394a63b32d7c41cfe ./vigun.UCR779.gnm1.ann1.VF6G.mrna_primary.fna.gz.fai -f4c5b5a073258a31a4eae003d83ab284 ./vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.gff3.gz.tbi -feec53c950647657643f45709b18e21d ./vigun.UCR779.gnm1.ann1.VF6G.cds_primary.fna.gz -16a8d3694229c4dd81769359cfbfda8e ./BUSCO/vigun.UCR779.gnm1.ann1.VF6G.busco.fabales_odb10.full_table.tsv.gz -4a3bac36cf3cc4b84e7fc14e71332416 ./BUSCO/vigun.UCR779.gnm1.ann1.VF6G.busco.fabales_odb10.short_summary.txt -3c396e0a3ceead89546d6fc401bebebe ./BUSCO/vigun.UCR779.gnm1.ann1.VF6G.busco.fabales_odb10.short_summary.json -621c4b274d1463f999c238998dd78fd1 ./CHANGES.UCR779.gnm1.ann1.VF6G.txt -5ad0159cc7eb8dece197847591a27408 ./vigun.UCR779.gnm1.ann1.VF6G.cds.bed.gz -bc9a12f872411a91ba6b162961b7ae52 ./vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.bed.gz -c3c4dcebf308692ea88b6e6e6f7d63f3 ./vigun.UCR779.gnm1.ann1.VF6G.mrna_primary.fna.gz.gzi -86161ab56a24fbcffad74df4ffe9a2e4 ./vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.bed.gz.tbi -f1c3222b9a003899c5615821de97c889 ./vigun.UCR779.gnm1.ann1.VF6G.protein_primary.faa.gz.gzi -2a60006726693b389e7225545aa7f55d ./vigun.UCR779.gnm1.ann1.VF6G.legfed_v1_0.M65K.gfa.tsv.gz -01b19c61ab8b3a2cce12b2ab42327f3a ./vigun.UCR779.gnm1.ann1.VF6G.legfed_v1_0.M65K.pathway.tsv.gz -1142adb9b8dd3b2c6787d75d6c424960 ./vigun.UCR779.gnm1.ann1.VF6G.mrna.fna.gz -1cf569dcbdb240bb03f1eca1c09d7722 ./vigun.UCR779.gnm1.ann1.VF6G.mrna.fna.gz.gzi -94e55f1ea7a45801212043592331d8fb ./vigun.UCR779.gnm1.ann1.VF6G.cds_primary.fna.gz.gzi -fb4339b55bc31e48800b2dfaf0d50f07 ./vigun.UCR779.gnm1.ann1.VF6G.protein_primary.faa.gz -d647448cc163bb94b44f333d88994538 ./vigun.UCR779.gnm1.ann1.VF6G.protein.faa.gz.gzi -29af7e4399b9a75f3986b020bcd616e9 ./README.UCR779.gnm1.ann1.VF6G.yml -3a2243a8841fa7ec2891595b7b4e9731 ./vigun.UCR779.gnm1.ann1.VF6G.cds.fna.gz.fai +621c4b274d1463f999c238998dd78fd1 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/CHANGES.UCR779.gnm1.ann1.VF6G.txt +29af7e4399b9a75f3986b020bcd616e9 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/README.UCR779.gnm1.ann1.VF6G.yml +feec53c950647657643f45709b18e21d Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.cds_primary.fna.gz +418a5dc6c168cd5087415a4571b05c8e Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.cds_primary.fna.gz.fai +94e55f1ea7a45801212043592331d8fb Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.cds_primary.fna.gz.gzi +328bdd4e617424b7e498a09f4ccf3e25 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.cds.fna.gz +3a2243a8841fa7ec2891595b7b4e9731 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.cds.fna.gz.fai +a163a19c345b4fd9397e8676ae00d467 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.cds.fna.gz.gzi +c9aba3148378fb80f7f47ce475776419 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.bed.gz +84da12b122fc95b9f569b23efb271943 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.bed.gz.tbi +fb532fec43fdc543d190d9ba7b247d9e Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.gff3.gz +f4c5b5a073258a31a4eae003d83ab284 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.gene_models_main.gff3.gz.tbi +2a60006726693b389e7225545aa7f55d Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.legfed_v1_0.M65K.gfa.tsv.gz +e1166a0bda966a4909caa84760425b70 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.mrna_primary.fna.gz +e657e4f0abf0345394a63b32d7c41cfe Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.mrna_primary.fna.gz.fai +c3c4dcebf308692ea88b6e6e6f7d63f3 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.mrna_primary.fna.gz.gzi +1142adb9b8dd3b2c6787d75d6c424960 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.mrna.fna.gz +69e5a30681b14c86503af8d07bc73339 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.mrna.fna.gz.fai +1cf569dcbdb240bb03f1eca1c09d7722 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.mrna.fna.gz.gzi +fb4339b55bc31e48800b2dfaf0d50f07 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.protein_primary.faa.gz +4d39a059d5691d825cac93cdef1f40db Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.protein_primary.faa.gz.fai +f1c3222b9a003899c5615821de97c889 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.protein_primary.faa.gz.gzi +e7191fa7885802adf2bbcc3e565e0e87 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.protein.faa.gz +1724f778faae26d469ab158c6e91d2b0 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.protein.faa.gz.fai +d647448cc163bb94b44f333d88994538 Vigna/unguiculata/annotations/UCR779.gnm1.ann1.VF6G/vigun.UCR779.gnm1.ann1.VF6G.protein.faa.gz.gzi diff --git a/Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/CHECKSUM.Xiabao_II.gnm1.ann1.4JFL.md5 b/Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/CHECKSUM.Xiabao_II.gnm1.ann1.4JFL.md5 index 2e844d0f..4065df96 100644 --- a/Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/CHECKSUM.Xiabao_II.gnm1.ann1.4JFL.md5 +++ b/Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/CHECKSUM.Xiabao_II.gnm1.ann1.4JFL.md5 @@ -1,20 +1,16 @@ -8251a76cc6cec170df6da2b51d5b94c4 ./vigun.Xiabao_II.gnm1.ann1.4JFL.gene_models_main.gff3.gz.tbi -62acd8088264adb6216ed874b0d3dfa9 ./vigun.Xiabao_II.gnm1.ann1.4JFL.protein.faa.gz.fai -b7f5b05c6edba7778b56756fef89f75c ./vigun.Xiabao_II.gnm1.ann1.4JFL.cds.bed.gz.tbi -effe85ffed90dda6765f3589f82001a5 ./vigun.Xiabao_II.gnm1.ann1.4JFL.cds.fna.gz -0d440eaf3387184d60bc86276cbb6cdf ./vigun.Xiabao_II.gnm1.ann1.4JFL.cds.fna.gz.gzi -524c6433f7c0cd7a7a83b2a6ff1b0b9c ./vigun.Xiabao_II.gnm1.ann1.4JFL.protein.faa.gz -7ef476af1f2f14b345bba2e2ed3238f3 ./vigun.Xiabao_II.gnm1.ann1.4JFL.mrna.fna.gz.gzi -32a7671fcd919737415410b4ba5451a5 ./vigun.Xiabao_II.gnm1.ann1.4JFL.legfed_v1_0.M65K.pathway.tsv.gz -89190b64257295e408f1fce9a84bea02 ./vigun.Xiabao_II.gnm1.ann1.4JFL.cds.bed.gz -d9e26cdb15e10edb40d740657818b6ac ./vigun.Xiabao_II.gnm1.ann1.4JFL.mrna.fna.gz.fai -8aeba40bd19e6bd4d8591e2642865d32 ./vigun.Xiabao_II.gnm1.ann1.4JFL.cds.fna.gz.fai -257cf2a51943466afbed8cc2281d6a25 ./BUSCO/vigun.Xiabao_II.gnm1.ann1.4JFL.busco.fabales_odb10.short_summary.txt -aa666f97a5c932a12860b1b028d95667 ./BUSCO/vigun.Xiabao_II.gnm1.ann1.4JFL.busco.fabales_odb10.full_table.tsv.gz -3378e8c2e673eb94b3148978bfbd6826 ./BUSCO/vigun.Xiabao_II.gnm1.ann1.4JFL.busco.fabales_odb10.short_summary.json -2a2392620c81ac0d2fa447da8ff21d87 ./vigun.Xiabao_II.gnm1.ann1.4JFL.mrna.fna.gz -3130b8db661a73e28bad93b91ec516b1 ./README.Xiabao_II.gnm1.ann1.4JFL.yml -e813459cb2f564755d803fe34da77013 ./CHANGES.Xiabao_II.gnm1.ann1.4JFL.txt -df530d4cbdfa8eb16d9d610f65fd9e06 ./vigun.Xiabao_II.gnm1.ann1.4JFL.legfed_v1_0.M65K.gfa.tsv.gz -50ae3b8cd61b4d147a3d5458247ac757 ./vigun.Xiabao_II.gnm1.ann1.4JFL.protein.faa.gz.gzi -574aeee79605e903e0c4a448e138afa9 ./vigun.Xiabao_II.gnm1.ann1.4JFL.gene_models_main.gff3.gz +e813459cb2f564755d803fe34da77013 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/CHANGES.Xiabao_II.gnm1.ann1.4JFL.txt +76ecfb5efcde7c45a233298c8ed1b902 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/README.Xiabao_II.gnm1.ann1.4JFL.yml +effe85ffed90dda6765f3589f82001a5 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.cds.fna.gz +8aeba40bd19e6bd4d8591e2642865d32 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.cds.fna.gz.fai +0d440eaf3387184d60bc86276cbb6cdf Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.cds.fna.gz.gzi +82352f33a34fe8003f375e2b76e38005 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.gene_models_main.bed.gz +ddeab862cee64dda9d55f5aa15f4c175 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.gene_models_main.bed.gz.tbi +574aeee79605e903e0c4a448e138afa9 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.gene_models_main.gff3.gz +8251a76cc6cec170df6da2b51d5b94c4 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.gene_models_main.gff3.gz.tbi +df530d4cbdfa8eb16d9d610f65fd9e06 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.legfed_v1_0.M65K.gfa.tsv.gz +2a2392620c81ac0d2fa447da8ff21d87 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.mrna.fna.gz +d9e26cdb15e10edb40d740657818b6ac Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.mrna.fna.gz.fai +7ef476af1f2f14b345bba2e2ed3238f3 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.mrna.fna.gz.gzi +524c6433f7c0cd7a7a83b2a6ff1b0b9c Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.protein.faa.gz +62acd8088264adb6216ed874b0d3dfa9 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.protein.faa.gz.fai +50ae3b8cd61b4d147a3d5458247ac757 Vigna/unguiculata/annotations/Xiabao_II.gnm1.ann1.4JFL/vigun.Xiabao_II.gnm1.ann1.4JFL.protein.faa.gz.gzi diff --git a/Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/CHECKSUM.ZN016.gnm1.ann2.C7YV.md5 b/Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/CHECKSUM.ZN016.gnm1.ann2.C7YV.md5 index ade361c5..7081cc24 100644 --- a/Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/CHECKSUM.ZN016.gnm1.ann2.C7YV.md5 +++ b/Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/CHECKSUM.ZN016.gnm1.ann2.C7YV.md5 @@ -1,29 +1,25 @@ -732ac73dca0b24a5b60216a99661e188 ./vigun.ZN016.gnm1.ann2.C7YV.protein_primary.faa.gz -de592cfb4984c8454820d931b4212e6d ./vigun.ZN016.gnm1.ann2.C7YV.mrna.fna.gz.fai -adb897f31e72ba970f2d12b5e035d53b ./vigun.ZN016.gnm1.ann2.C7YV.cds_primary.fna.gz.gzi -ccb6c5454bb0ad31c15f038ad5226707 ./vigun.ZN016.gnm1.ann2.C7YV.cds.bed.gz.tbi -31e22180faa3f907e4b85c30d165cbf2 ./vigun.ZN016.gnm1.ann2.C7YV.mrna.fna.gz -518bee549e1112b50be7be5fac613e64 ./vigun.ZN016.gnm1.ann2.C7YV.mrna_primary.fna.gz.fai -a285f1732b1a4dd54af3f80e42afab91 ./vigun.ZN016.gnm1.ann2.C7YV.protein.faa.gz.fai -e3a8fe2c65068631ce045ed7c1582da1 ./vigun.ZN016.gnm1.ann2.C7YV.protein_primary.faa.gz.fai -55a6f90c066a3f6c37f5c3b3365a7514 ./vigun.ZN016.gnm1.ann2.C7YV.mrna_primary.fna.gz -2247d765f1c479a8769a578a139d0ede ./vigun.ZN016.gnm1.ann2.C7YV.cds.fna.gz -c31b19f0f94c604d33d7dbff8e6f8e29 ./vigun.ZN016.gnm1.ann2.C7YV.cds.fna.gz.gzi -991865da49d18edfcefeb1dd2cb701e1 ./README.ZN016.gnm1.ann2.C7YV.yml -86d4f8a4fc9c5f52993243e159fb4110 ./vigun.ZN016.gnm1.ann2.C7YV.protein.faa.gz -c554b3c725afc6ed30bac0c581dabf3b ./vigun.ZN016.gnm1.ann2.C7YV.gene_models_main.gff3.gz.tbi -529234c5a4b97f4c2dcd508ac4f454df ./BUSCO/vigun.ZN016.gnm1.ann2.C7YV.busco.fabales_odb10.short_summary.json -92655c9f8bce14d358d4ebfd93cb4f65 ./BUSCO/vigun.ZN016.gnm1.ann2.C7YV.busco.fabales_odb10.short_summary.txt -d95b9431e0c07486e06ee8a4bc8eac15 ./BUSCO/vigun.ZN016.gnm1.ann2.C7YV.busco.fabales_odb10.full_table.tsv.gz -e2184e59a4df23ae00f5fdb9f40ee9a8 ./vigun.ZN016.gnm1.ann2.C7YV.cds_primary.fna.gz -8ddcba4e13c1dbb2b59f1ec1ce348e37 ./vigun.ZN016.gnm1.ann2.C7YV.cds.bed.gz -f16ddfcbc05d04f24e34e816b9b46e89 ./vigun.ZN016.gnm1.ann2.C7YV.gene_models_main.gff3.gz -d0b96a337f1004275f83c24394de6b91 ./vigun.ZN016.gnm1.ann2.C7YV.legfed_v1_0.M65K.gfa.tsv.gz -5dca4d002aa68f2db4b484abaa41b7da ./vigun.ZN016.gnm1.ann2.C7YV.cds.fna.gz.fai -ca27666a47fc06bfe8b43b852905ba54 ./vigun.ZN016.gnm1.ann2.C7YV.protein_primary.faa.gz.gzi -b35c576fb2c8205398a7832c6f2ea393 ./vigun.ZN016.gnm1.ann2.C7YV.protein.faa.gz.gzi -621c4b274d1463f999c238998dd78fd1 ./CHANGES.ZN016.gnm1.ann2.C7YV.txt -35dc96b5664137701b6bd6d95eefd5ea ./vigun.ZN016.gnm1.ann2.C7YV.legfed_v1_0.M65K.pathway.tsv.gz -a969056aeb2525b8612ec686704a87bc ./vigun.ZN016.gnm1.ann2.C7YV.mrna_primary.fna.gz.gzi -0a75e8a64606fe64b5557d1868765f24 ./vigun.ZN016.gnm1.ann2.C7YV.mrna.fna.gz.gzi -e059d1366cbda18703ef2b444c789309 ./vigun.ZN016.gnm1.ann2.C7YV.cds_primary.fna.gz.fai +621c4b274d1463f999c238998dd78fd1 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/CHANGES.ZN016.gnm1.ann2.C7YV.txt +991865da49d18edfcefeb1dd2cb701e1 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/README.ZN016.gnm1.ann2.C7YV.yml +e2184e59a4df23ae00f5fdb9f40ee9a8 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.cds_primary.fna.gz +e059d1366cbda18703ef2b444c789309 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.cds_primary.fna.gz.fai +adb897f31e72ba970f2d12b5e035d53b Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.cds_primary.fna.gz.gzi +2247d765f1c479a8769a578a139d0ede Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.cds.fna.gz +5dca4d002aa68f2db4b484abaa41b7da Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.cds.fna.gz.fai +c31b19f0f94c604d33d7dbff8e6f8e29 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.cds.fna.gz.gzi +cf898036b4f804f623589340d5cab508 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.gene_models_main.bed.gz +67eb3a0c51b13a38d7290b26ab181c55 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.gene_models_main.bed.gz.tbi +f16ddfcbc05d04f24e34e816b9b46e89 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.gene_models_main.gff3.gz +c554b3c725afc6ed30bac0c581dabf3b Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.gene_models_main.gff3.gz.tbi +d0b96a337f1004275f83c24394de6b91 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.legfed_v1_0.M65K.gfa.tsv.gz +55a6f90c066a3f6c37f5c3b3365a7514 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.mrna_primary.fna.gz +518bee549e1112b50be7be5fac613e64 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.mrna_primary.fna.gz.fai +a969056aeb2525b8612ec686704a87bc Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.mrna_primary.fna.gz.gzi +31e22180faa3f907e4b85c30d165cbf2 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.mrna.fna.gz +de592cfb4984c8454820d931b4212e6d Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.mrna.fna.gz.fai +0a75e8a64606fe64b5557d1868765f24 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.mrna.fna.gz.gzi +732ac73dca0b24a5b60216a99661e188 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.protein_primary.faa.gz +e3a8fe2c65068631ce045ed7c1582da1 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.protein_primary.faa.gz.fai +ca27666a47fc06bfe8b43b852905ba54 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.protein_primary.faa.gz.gzi +86d4f8a4fc9c5f52993243e159fb4110 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.protein.faa.gz +a285f1732b1a4dd54af3f80e42afab91 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.protein.faa.gz.fai +b35c576fb2c8205398a7832c6f2ea393 Vigna/unguiculata/annotations/ZN016.gnm1.ann2.C7YV/vigun.ZN016.gnm1.ann2.C7YV.protein.faa.gz.gzi From a285df375dfe2bb06e7a81136b2117d2c8da2bb0 Mon Sep 17 00:00:00 2001 From: Steven Cannon Date: Sun, 7 Jan 2024 12:02:36 -0600 Subject: [PATCH 56/57] Add CHECKSUM.ISC453364.gnm3.GWXB.md5, reflecting addition of assembly for alternate haplotype: cerca.ISC453364.gnm3_hap2.B489.genome.fna.gz --- .../CHECKSUM.ISC453364.gnm3.GWXB.md5 | 20 +++++++++++++++++++ 1 file changed, 20 insertions(+) create mode 100644 Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/CHECKSUM.ISC453364.gnm3.GWXB.md5 diff --git a/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/CHECKSUM.ISC453364.gnm3.GWXB.md5 b/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/CHECKSUM.ISC453364.gnm3.GWXB.md5 new file mode 100644 index 00000000..b03b894a --- /dev/null +++ b/Cercis/canadensis/genomes/ISC453364.gnm3.GWXB/CHECKSUM.ISC453364.gnm3.GWXB.md5 @@ -0,0 +1,20 @@ +ed5e811f8ba7258f6c7c085d44dd628c ./BUSCO/cerca.ISC453364.gnm3.GWXB.busco.fabales_odb10.short_summary.json +e8c472fdb1d7dab12a93aa5f87a285c2 ./BUSCO/cerca.ISC453364.gnm3.GWXB.busco.fabales_odb10.short_summary.txt +27444525da92bf6a852239081bceddf9 ./BUSCO/cerca.ISC453364.gnm3.GWXB.busco.fabales_odb10.full_table.tsv.gz +be8a9073b3e2b87fad833f27f1d11e03 ./cerca.ISC453364.gnm3.GWXB.genome_softmasked.fna.gz.gzi +f40b164b5d993108511e644ff6f22e5b ./cerca.ISC453364.gnm3.GWXB.genome_softmasked.fna.gz +c39c47f00598e1ea303a7a9988cecafc ./CHANGES.ISC453364.gnm3.GWXB.txt +0c6f230daefeaad533fe50d24a087db3 ./MANIFEST.ISC453364.gnm3.GWXB.descriptions.yml +b06870cca7d80259ab655d50073d31fa ./cerca.ISC453364.gnm3.GWXB.genome_main.fna.gz +b61a505f5e9ca3a970d208bb86ee0330 ./cerca.ISC453364.gnm3.GWXB.genome_hardmasked.fna.gz.gzi +98f56fa75c7a4c82caafca6b161b5953 ./cerca.ISC453364.gnm3.GWXB.genome_main.fna.gz.fai +f37824b43f01b3cb5cbac0ee706ffb61 ./MANIFEST.ISC453364.gnm3.GWXB.correspondence.yml +b58a53a34fbeb4876a91ecb34d8012cd ./cerca.ISC453364.gnm3.GWXB.genome_hardmasked.fna.gz +4f85539a3eddd4cad6ac4d3468c91c70 ./cerca.ISC453364.gnm3.GWXB.DataReleasePolicy.html +d29f48888761d0a0042e8798fc0580bd ./cerca.ISC453364.gnm3_hap2.B489.genome.fna.gz +c23732e29246a74105a3e81e1d73e59e ./README.ISC453364.gnm3.GWXB.yml +8ec406cb55cbdde0a3bb4819cbdbc047 ./cerca.ISC453364.gnm3.GWXB.genome_hardmasked.fna.gz.fai +11273c7858af5c48cf30e3fcfabddc20 ./cerca.ISC453364.gnm3.GWXB.seqid_map.tsv.gz +07a346bda78785571cc594073091d58b ./cerca.ISC453364.gnm3.GWXB.genome_main.fna.gz.gzi +22237aebda7ccd37c94ff55a43f8d1f5 ./cerca.ISC453364.gnm3.GWXB.original_readme.txt +8ec406cb55cbdde0a3bb4819cbdbc047 ./cerca.ISC453364.gnm3.GWXB.genome_softmasked.fna.gz.fai From 1dfb0ccd27cb53f63a9c77b0d63a35c2613c7c90 Mon Sep 17 00:00:00 2001 From: Steven Cannon Date: Sun, 7 Jan 2024 12:19:42 -0600 Subject: [PATCH 57/57] Hokin/Cannon Enumerate genotypes in README --- ....Wm82.gnm1.div.ContrerasSoto_Mora_2017.md5 | 5 +- ....Wm82.gnm1.div.ContrerasSoto_Mora_2017.yml | 170 +++++++++++++++++- 2 files changed, 172 insertions(+), 3 deletions(-) diff --git a/Glycine/max/diversity/Wm82.gnm1.div.ContrerasSoto_Mora_2017/CHECKSUM.Wm82.gnm1.div.ContrerasSoto_Mora_2017.md5 b/Glycine/max/diversity/Wm82.gnm1.div.ContrerasSoto_Mora_2017/CHECKSUM.Wm82.gnm1.div.ContrerasSoto_Mora_2017.md5 index 4f1b9e6e..39998066 100644 --- a/Glycine/max/diversity/Wm82.gnm1.div.ContrerasSoto_Mora_2017/CHECKSUM.Wm82.gnm1.div.ContrerasSoto_Mora_2017.md5 +++ b/Glycine/max/diversity/Wm82.gnm1.div.ContrerasSoto_Mora_2017/CHECKSUM.Wm82.gnm1.div.ContrerasSoto_Mora_2017.md5 @@ -2,5 +2,6 @@ edc56935ec8ec30ab1a3884225f5413a ./MANIFEST.Wm82.gnm1.div.ContrerasSoto_Mora_20 8384b74de5231ac41095e621c19b3a95 ./MANIFEST.Wm82.gnm1.div.ContrerasSoto_Mora_2017.descriptions.yml 955c006dbad6a13d62ea20dd4645a035 ./glyma.Wm82.gnm1.div.ContrerasSoto_Mora_2017.SNPs.vcf.gz 8d5fe2d45ac6a1322e372242d647111b ./glyma.Wm82.gnm1.div.ContrerasSoto_Mora_2017.SNPs.vcf.gz.tbi -c6f6c25f7dc6081a764c7ac610d6591a ./README.Wm82.gnm1.div.ContrerasSoto_Mora_2017.yml -5fa9d2b840c9e7854b755fe0f9073ee4 ./CHANGES.Wm82.gnm1.div.ContrerasSoto_Mora_2017.txt +2b1e5faa8a22ccb876dd147cfad23dc3 ./README.Wm82.gnm1.div.ContrerasSoto_Mora_2017.yml +5776327cc9dbcff3d0c27ea2a0b2e2da ./ACCESSIONS.Wm82.gnm1.div.ContrerasSoto_Mora_2017.txt +1ef23daedba59a97362c96846916914c ./CHANGES.Wm82.gnm1.div.ContrerasSoto_Mora_2017.txt diff --git a/Glycine/max/diversity/Wm82.gnm1.div.ContrerasSoto_Mora_2017/README.Wm82.gnm1.div.ContrerasSoto_Mora_2017.yml b/Glycine/max/diversity/Wm82.gnm1.div.ContrerasSoto_Mora_2017/README.Wm82.gnm1.div.ContrerasSoto_Mora_2017.yml index ad119344..25b753b2 100644 --- a/Glycine/max/diversity/Wm82.gnm1.div.ContrerasSoto_Mora_2017/README.Wm82.gnm1.div.ContrerasSoto_Mora_2017.yml +++ b/Glycine/max/diversity/Wm82.gnm1.div.ContrerasSoto_Mora_2017/README.Wm82.gnm1.div.ContrerasSoto_Mora_2017.yml @@ -12,7 +12,175 @@ taxid: 3847 scientific_name_abbrev: glyma genotype: - - 169 Brazilian soybean cultivars + - ANTA + - A6001-RR + - A8000 + - CD-202 + - CD-244RR + - BRSMT-Pintado + - TABARANA + - CD-247RR + - CD-231RR + - MSOY-7201 + - LIDERANCA + - MATRINCHA + - BRSMT-Crixas + - BRSMS-Lambari + - MSOY-2001 + - OCEPAR-14 + - FT-GUAIRA + - R7 + - A6001 + - VENCEDORA + - EMBRAPA-59 + - CD-243RR + - CD-213RR + - CD-214RR + - CD-216 + - CD-230RR + - CD-205 + - CD-224 + - CD-225RR + - CD-204 + - CD-233RR + - CD-217 + - CD-246 + - Fundacep-56RR + - M8527-RR + - FUNDACEP-55RR + - CD-229RR + - CD-228 + - CD-221 + - NIDERA-A-7321-RG + - TMG-123RR + - BRS-133 + - BRS-230 + - M7639-RR + - BRS-184 + - IGRA-RA-518RR + - M9144-RR + - CONQUISTA + - BMX-APOLLO-RR + - TMG-115RR + - IGRA-RA-628RR + - BRS-268 + - BRS-262 + - BRS-245RR + - BRS-258 + - M7908RR + - BRS-213 + - IGRA-RA-516RR + - BRS-246RR + - CD-2860 + - FUNDACEP-58RR + - CD-5969 + - P98Y51 + - M7211RR + - BRS-282 + - CD-206RR + - CD-248RR + - BMX-Titan-RR + - P98Y70 + - BMX-MAGNA-RR + - BMX-ATIVA-RR + - NIDERA-A-6411RR + - BRS-256RR + - BRS-243RR + - P98Y11 + - NK3358 + - CD-253 + - CD-240RR + - CD-2630RR + - CD-215 + - NA-4990 + - CD-234RR + - 5D-711RR + - CD-249RR-STS + - CD-219RR + - 5D-690RR + - TMG-103RR + - FUNDACEP-53RR + - BRS-283 + - FUNDACEP-57RR + - BRS-257 + - EMBRAPA-48 + - BRS-185 + - BRS-232 + - CD-226RR + - CD-235RR + - CD-252 + - 5G-830RR + - CD-239RR + - CD-236RR + - USP-1 + - CD-237RR + - BRSMG-Renascenca + - CD-242RR + - Fundacep-33 + - TMG-1161RR + - CD-232 + - TMG-4001RR + - TMG-7161RR + - TMG-1067RR + - SPRING-5-3 + - CD-2840 + - CAC-1 + - FT-Abyara + - TUCUNARE + - CAPINOPOLIS + - Bragg + - CD-201 + - CD-208 + - CD-206 + - CD-218 + - CD-2721RR + - CD-FAPA + - M-SOY-7901 + - Fundacep-38 + - IAS-5 + - ENGOPA-302 + - GARIMPO + - FT-ESTRELA + - DOM-MARIO-7-0-I-RR + - NS-4823 + - BMX-POTU-CNCIA-RR + - BMX-Forca-RR + - CD-2737RR + - BMX-ENERGIA-RR + - BMX-TURBO-RR + - CD-2585RR + - FUNDACEP-39 + - M-SOY-6101 + - CD-5807 + - MERCEDES-70A + - EMGOPA-304 + - OCEPAR-3-PRIMAVERA + - CELESTE + - MSOY-8001 + - TMG-1066RR + - NA-5909RR + - 5G-770RR + - NK-7059 + - CD-245RR + - CD-251RR + - CD-254RR + - CD-2792RR + - 5D-688RR + - CD-250RR-STS + - 5D-660RR + - CD-238RR + - Tropical-RR + - NIDERA-A-4725-RG + - IGRA-RA-62RR + - BRS-259 + - M7578RR + - BRS-284 + - FUNDACEP-61RR + - FUNDACEP-63RR + - CD-2800 + - FUNDACEP-59RR + - M6009RR + - M6707RR description: "VCF file received from Dr. Rodrigo Ivan Contreras-Soto containing haplotype information for 169 Brazilian soybean cultivars genotyped with the SoyNAM6K SNP chip."