From 69d980fee0a35be885a36892aadb8b8da0bb6fd4 Mon Sep 17 00:00:00 2001
From: Steven Cannon <scannon@iastate.edu>
Date: Wed, 21 Feb 2024 13:21:58 -0600
Subject: [PATCH] Add collection of soybean transposable elements/repeats
 corresponding with Du, Grant et al. (2010) / SoyTEdb

---
 .../Wm82.rpt.C1JW/CHECKSUM.Wm82.rpt.C1JW.md5  |  7 ++++
 .../Wm82.rpt.C1JW/README.Wm82.rpt.C1JW.yml    | 37 +++++++++++++++++++
 2 files changed, 44 insertions(+)
 create mode 100644 Glycine/max/repeats/Wm82.rpt.C1JW/CHECKSUM.Wm82.rpt.C1JW.md5
 create mode 100644 Glycine/max/repeats/Wm82.rpt.C1JW/README.Wm82.rpt.C1JW.yml

diff --git a/Glycine/max/repeats/Wm82.rpt.C1JW/CHECKSUM.Wm82.rpt.C1JW.md5 b/Glycine/max/repeats/Wm82.rpt.C1JW/CHECKSUM.Wm82.rpt.C1JW.md5
new file mode 100644
index 00000000..ed815939
--- /dev/null
+++ b/Glycine/max/repeats/Wm82.rpt.C1JW/CHECKSUM.Wm82.rpt.C1JW.md5
@@ -0,0 +1,7 @@
+3c71b0eb756eb111dfbba8e51b65f132  ./MANIFEST.Wm82.rpt.C1JW.correspondence.yml
+c7e10ef425f34dd481eafd53cd0c7d12  ./README.Wm82.rpt.C1JW.yml
+b20a835052e952a20c16e46e975e68fc  ./glyma.Wm82.rpt.C1JW.SOY_TEdb.fna.gz
+0410ce887e4a7d6951fe8a2a92ed531c  ./glyma.Wm82.rpt.C1JW.SOY_TE_LIB.fna.gz
+996d01c76b31ebc795ef5c631c441817  ./glyma.Wm82.rpt.C1JW.SOY_TE_LIB_id60.fna.gz
+abba7aa2ce3f65a57e8ad03e4f552614  ./CHANGES.Wm82.rpt.C1JW.txt
+8297a4079b3267723c40b84e2798ce2c  ./MANIFEST.Wm82.rpt.C1JW.descriptions.yml
diff --git a/Glycine/max/repeats/Wm82.rpt.C1JW/README.Wm82.rpt.C1JW.yml b/Glycine/max/repeats/Wm82.rpt.C1JW/README.Wm82.rpt.C1JW.yml
new file mode 100644
index 00000000..cc1fe578
--- /dev/null
+++ b/Glycine/max/repeats/Wm82.rpt.C1JW/README.Wm82.rpt.C1JW.yml
@@ -0,0 +1,37 @@
+---
+identifier: Wm82.rpt.C1JW
+
+provenance: "This repository is considered the primary source for these files. The files here are held as part of the SoyBase and LegumeInfo."
+
+source: "https://soybase.org/data"
+
+synopsis: Genomic repetitive elements for Glycine max, identified in Williams 82 (Wm82) assembly 1, published as part of SoyTEdb
+
+scientific_name: Glycine max
+
+taxid: 3847
+
+scientific_name_abbrev: glyma
+
+genotype:
+  - Williams 82
+
+description: "This collection contains repetitive elements for Glycine max identified by Du, Grant, Tian et al. (2010)."
+
+original_file_creation_date: "2010-02-17"
+
+local_file_creation_date: "2024-02-21"
+
+dataset_release_date: "2024-02-21"
+
+publication_doi: 10.1186/1471-2164-11-113
+
+contributors: "Du J, Grant D, Tian Z, Nelson RT, Zhu L, Shoemaker RC, Ma J."
+
+data_curators: Rex Nelson, David Grant, Steven Cannon
+
+public_access_level: public
+
+license: Open
+
+keywords: transposable elements, SoyTEdb, soybean, repetitive elements