.gitignore

*.pdf
#compiled python files
*.pyc
*.pyo

#pycharm files
analysis/.idea/*
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.ipynb_checkpoints

.vscode

*.xml

*.iml

analysis/.idea/analysis.iml

analysis/.idea/misc.xml

analysis/.idea/workspace.xml
analysis/autofocus/checkpoints/*
analysis/autofocus/log/*
analysis/autofocus/exported_model/*


# cookie monster
experiments/config_files/training
experiments/config_files/pending

led_array/phenotyping_experiments/config_files/pending
led_array/phenotyping_experiments/config_files/training


imager_experiments/archive_code/*
color_filter_array/legacy/*
color_filter_array/wandb/*
color_filter_array/data/*
color_filter_array/four_channel_images.zarr/*
color_filter_array/models/*
*.cache
*.cached
*.cached_old

*.npy
model_fitting_tests/*


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venv

build/
dist/
*.egg-info
*.egg-info test
*.pyc
__pycache__/


#jupyter
.ipynb_checkpoints
#vim
*.swp
#vs code
.vscode/
#OS files
.DS_Store
/docs/_build/doctrees/environment.pickle