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replace the ambiguous len(contig) by contig.number_of_genes #588

replace the ambiguous len(contig) by contig.number_of_genes

replace the ambiguous len(contig) by contig.number_of_genes #588

Triggered via push September 6, 2023 10:10
Status Failure
Total duration 21m 56s
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main.yml

on: push
Matrix: test
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6 errors and 12 warnings
test PPanGGOLiN on ubuntu-latest with python 3.10
Process completed with exit code 1.
test PPanGGOLiN on macos-latest with python 3.9
The operation was canceled.
test PPanGGOLiN on ubuntu-latest with python 3.8
The operation was canceled.
test PPanGGOLiN on ubuntu-latest with python 3.9
The operation was canceled.
test PPanGGOLiN on macos-latest with python 3.8
The operation was canceled.
test PPanGGOLiN on macos-latest with python 3.10
The operation was canceled.
test PPanGGOLiN on ubuntu-latest with python 3.10
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test PPanGGOLiN on ubuntu-latest with python 3.10
==> WARNING: A newer version of conda exists. <== current version: 23.5.2 latest version: 23.7.3 Please update conda by running $ conda update -n base -c defaults conda Or to minimize the number of packages updated during conda update use conda install conda=23.7.3
test PPanGGOLiN on macos-latest with python 3.9
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test PPanGGOLiN on macos-latest with python 3.9
==> WARNING: A newer version of conda exists. <== current version: 23.5.2 latest version: 23.7.3 Please update conda by running $ conda update -n base -c defaults conda Or to minimize the number of packages updated during conda update use conda install conda=23.7.3
test PPanGGOLiN on ubuntu-latest with python 3.8
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test PPanGGOLiN on ubuntu-latest with python 3.8
==> WARNING: A newer version of conda exists. <== current version: 23.5.2 latest version: 23.7.3 Please update conda by running $ conda update -n base -c defaults conda Or to minimize the number of packages updated during conda update use conda install conda=23.7.3
test PPanGGOLiN on ubuntu-latest with python 3.9
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test PPanGGOLiN on ubuntu-latest with python 3.9
==> WARNING: A newer version of conda exists. <== current version: 23.5.2 latest version: 23.7.3 Please update conda by running $ conda update -n base -c defaults conda Or to minimize the number of packages updated during conda update use conda install conda=23.7.3
test PPanGGOLiN on macos-latest with python 3.8
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test PPanGGOLiN on macos-latest with python 3.8
==> WARNING: A newer version of conda exists. <== current version: 23.5.2 latest version: 23.7.3 Please update conda by running $ conda update -n base -c defaults conda Or to minimize the number of packages updated during conda update use conda install conda=23.7.3
test PPanGGOLiN on macos-latest with python 3.10
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
test PPanGGOLiN on macos-latest with python 3.10
==> WARNING: A newer version of conda exists. <== current version: 23.5.2 latest version: 23.7.3 Please update conda by running $ conda update -n base -c defaults conda Or to minimize the number of packages updated during conda update use conda install conda=23.7.3