Unexpected keyword argument 'kmer_len' in constructor call of modisco.tfmodisco_workflow.seqlets_to_patterns.TfModiscoSeqletsToPatternsFactory

[ofiryaish]

Hello,

Does new versions support kmer_len, num_gaps, and num_mismatches in modisco.tfmodisco_workflow.seqlets_to_patterns.TfModiscoSeqletsToPatternsFactory?

I get the error that the constructor does know these keyword. The program runs, but why this error occurs? Does in new versions we changing these make any change?

[AvantiShri]

Hi @ofiryaish,

So the recent changes I made in response to your GitHub issue should not have affected those arguments. The version where those arguments were affected was v0.5.8.0, but I think you were already using that version (https://github.com/kundajelab/tfmodisco/releases/tag/v0.5.8.0), and in any case the changes in v0.5.8.0 were done in a way that maintained backwards compatibility (insofar as I tested them). Can you maybe give a screenshot/paste the call to tfmodisco that gives the error?