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environment.yml
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environment.yml
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name: interactome
channels:
- krinsman
- conda-forge
- bioconda
- defaults
dependencies:
- _r-mutex=1.0.1=anacondar_1
- anyio=2.2.0=py37hf985489_0
- appdirs=1.4.4=pyh9f0ad1d_0
- appnope=0.1.2=py37hf985489_1
- argon2-cffi=20.1.0=py37hf967b71_2
- async_generator=1.10=py_0
- attrs=20.3.0=pyhd3deb0d_0
- babel=2.9.0=pyhd3deb0d_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.3=pyhd8ed1ab_0
- bioconductor-biobase=2.50.0=r40h68a2ddb_1
- bioconductor-biocgenerics=0.36.0=r40hdfd78af_1
- bioconductor-delayedarray=0.16.3=r40h68a2ddb_0
- bioconductor-genomeinfodb=1.26.4=r40hdfd78af_0
- bioconductor-genomeinfodbdata=1.2.4=r40hdfd78af_1
- bioconductor-genomicranges=1.42.0=r40h68a2ddb_1
- bioconductor-iranges=2.24.1=r40h68a2ddb_0
- bioconductor-matrixgenerics=1.2.1=r40hdfd78af_0
- bioconductor-phenopath=1.14.0=r40h64ad5ed_0
- bioconductor-s4vectors=0.28.1=r40h68a2ddb_0
- bioconductor-summarizedexperiment=1.20.0=r40hdfd78af_1
- bioconductor-xvector=0.30.0=r40h68a2ddb_1
- bioconductor-zlibbioc=1.36.0=r40h68a2ddb_1
- black=20.8b1=py_1
- bleach=3.3.0=pyh44b312d_0
- brotlipy=0.7.0=py37hf967b71_1001
- bwidget=1.9.14=h694c41f_0
- bzip2=1.0.8=hc929b4f_4
- c-ares=1.17.1=h0d85af4_1
- ca-certificates=2020.12.5=h033912b_0
- cairo=1.16.0=he43a7df_1008
- cctools_osx-64=949.0.1=h6407bdd_20
- certifi=2020.12.5=py37hf985489_1
- cffi=1.14.5=py37h4d371b4_0
- chardet=4.0.0=py37hf985489_1
- clang=11.1.0=h694c41f_0
- clang-11=11.1.0=default_he082bbe_0
- clang_osx-64=11.1.0=hb91bd55_0
- clangxx=11.1.0=default_he082bbe_0
- clangxx_osx-64=11.1.0=h7e1b574_0
- click=7.1.2=pyh9f0ad1d_0
- colorama=0.4.4=pyh9f0ad1d_0
- compiler-rt=11.1.0=h654b07c_0
- compiler-rt_osx-64=11.1.0=h8c5fa43_0
- cryptography=3.4.7=py37hce4a858_0
- curl=7.76.0=h06286d4_0
- cycler=0.10.0=py_2
- dataclasses=0.8=pyhc8e2a94_1
- dbus=1.13.6=ha13b53f_2
- decorator=4.4.2=py_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrypoints=0.3=pyhd8ed1ab_1003
- expat=2.3.0=he49afe7_0
- fontconfig=2.13.1=hd23ceaa_1004
- freetype=2.10.4=h4cff582_1
- fribidi=1.0.10=hbcb3906_0
- gettext=0.19.8.1=h7937167_1005
- gfortran_impl_osx-64=9.3.0=h9cc0e5e_21
- gfortran_osx-64=9.3.0=h18f7dce_14
- gitdb=4.0.7=pyhd8ed1ab_0
- gitpython=3.1.14=pyhd8ed1ab_0
- glib=2.68.0=he49afe7_2
- glib-tools=2.68.0=he49afe7_2
- gmp=6.2.1=h2e338ed_0
- graphite2=1.3.13=h2e338ed_1001
- gsl=2.6=h71c5fe9_2
- harfbuzz=2.8.0=h159f659_1
- icu=68.1=h74dc148_0
- idna=2.10=pyh9f0ad1d_0
- importlib-metadata=3.10.0=py37hf985489_0
- ipykernel=5.5.3=py37h85f7c60_0
- ipython=7.22.0=py37h85f7c60_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=7.6.3=pyhd3deb0d_0
- isl=0.22.1=hb1e8313_2
- jedi=0.18.0=py37hf985489_2
- jinja2=2.11.3=pyh44b312d_0
- joblib=1.0.1=pyhd8ed1ab_0
- jpeg=9d=hbcb3906_0
- json5=0.9.5=pyh9f0ad1d_0
- jsonschema=3.2.0=pyhd8ed1ab_3
- jupyter=1.0.0=py37hf985489_6
- jupyter-packaging=0.7.12=pyhd8ed1ab_0
- jupyter_client=6.1.12=pyhd8ed1ab_0
- jupyter_console=6.4.0=pyhd8ed1ab_0
- jupyter_core=4.7.1=py37hf985489_0
- jupyter_server=1.5.1=py37hf985489_0
- jupyterlab=2.3.1=pyhd8ed1ab_0
- jupyterlab-toc=5.0.8=0
- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
- jupyterlab_server=1.2.0=py_0
- jupyterlab_widgets=1.0.0=pyhd8ed1ab_1
- kiwisolver=1.3.1=py37h70f7d40_1
- krb5=1.17.2=h60d9502_0
- lcms2=2.12=h577c468_0
- ld64_osx-64=530=he8994da_20
- ldid=2.1.2=h7660a38_2
- libblas=3.9.0=8_openblas
- libcblas=3.9.0=8_openblas
- libclang=11.1.0=default_he082bbe_0
- libclang-cpp11.1=11.1.0=default_he082bbe_0
- libcurl=7.76.0=h8ef9fac_0
- libcxx=11.1.0=habf9029_0
- libedit=3.1.20191231=h0678c8f_2
- libev=4.33=haf1e3a3_1
- libffi=3.3=h046ec9c_2
- libgfortran=5.0.0=9_3_0_h6c81a4c_21
- libgfortran-devel_osx-64=9.3.0=h6c81a4c_21
- libgfortran5=9.3.0=h6c81a4c_21
- libglib=2.68.0=hd556434_2
- libiconv=1.16=haf1e3a3_0
- liblapack=3.9.0=8_openblas
- libllvm11=11.1.0=hd011deb_0
- libnghttp2=1.43.0=h07e645a_0
- libopenblas=0.3.12=openmp_h54245bb_1
- libpng=1.6.37=h7cec526_2
- libpq=13.1=h052a64a_2
- libsodium=1.0.18=hbcb3906_1
- libssh2=1.9.0=h52ee1ee_6
- libtiff=4.2.0=h355d032_0
- libuv=1.41.0=hbcf498f_0
- libwebp-base=1.2.0=h0d85af4_2
- libxml2=2.9.10=h802ca4f_3
- llvm-openmp=11.1.0=hda6cdc1_0
- llvm-tools=11.1.0=hd011deb_0
- lz4-c=1.9.3=h046ec9c_0
- make=4.3=h22f3db7_1
- markupsafe=1.1.1=py37hf967b71_3
- matplotlib-base=3.4.1=py37hb018525_0
- mistune=0.8.4=py37hf967b71_1003
- mpc=1.1.0=ha57cd0f_1009
- mpfr=4.0.2=h72d8aaf_1
- mpmath=1.2.1=pyhd8ed1ab_0
- mypy_extensions=0.4.3=py37hf985489_3
- mysql-common=8.0.23=h694c41f_1
- mysql-libs=8.0.23=hbeb7981_1
- nbclassic=0.2.6=pyhd8ed1ab_0
- nbclient=0.5.3=pyhd8ed1ab_0
- nbconvert=6.0.7=py37hf985489_3
- nbdime=2.1.0=py_0
- nbformat=5.1.2=pyhd8ed1ab_1
- ncurses=6.2=h2e338ed_4
- nest-asyncio=1.5.1=pyhd8ed1ab_0
- nodejs=15.11.0=hb529b34_0
- notebook=6.3.0=py37hf985489_0
- nspr=4.30=hcd9eead_0
- nss=3.47=hc0980d9_0
- numpy=1.20.1=py37ha9839cc_0
- olefile=0.46=pyh9f0ad1d_1
- openssl=1.1.1k=h0d85af4_0
- packaging=20.9=pyh44b312d_0
- pandas=1.2.2=py37h7d02bce_0
- pandoc=2.13=h0d85af4_0
- pandocfilters=1.4.2=py_1
- pango=1.48.4=ha05cd14_0
- parso=0.8.2=pyhd8ed1ab_0
- pathspec=0.8.1=pyhd3deb0d_0
- patsy=0.5.1=py_0
- pcre=8.44=hb1e8313_0
- pcre2=10.36=h5cf9962_1
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pillow=8.1.2=py37hd4e48bc_0
- pip=21.0.1=pyhd8ed1ab_0
- pixman=0.40.0=hbcb3906_0
- prometheus_client=0.9.0=pyhd3deb0d_0
- prompt-toolkit=3.0.18=pyha770c72_0
- prompt_toolkit=3.0.18=hd8ed1ab_0
- ptyprocess=0.7.0=pyhd3deb0d_0
- pycparser=2.20=pyh9f0ad1d_2
- pygments=2.8.1=pyhd8ed1ab_0
- pyopenssl=20.0.1=pyhd8ed1ab_0
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyqt=5.12.3=py37hf985489_7
- pyqt-impl=5.12.3=py37h5ae2165_7
- pyqt5-sip=4.19.18=py37h5ab9d7d_7
- pyqtchart=5.12=py37h5ae2165_7
- pyqtwebengine=5.12.1=py37h5ae2165_7
- pyrsistent=0.17.3=py37hf967b71_2
- pysocks=1.7.1=py37hf985489_3
- python=3.7.10=h7728216_100_cpython
- python-dateutil=2.8.1=py_0
- python_abi=3.7=1_cp37m
- pytz=2021.1=pyhd8ed1ab_0
- pyzmq=22.0.3=py37h8f778e5_1
- qt=5.12.9=h126340a_4
- qtconsole=5.0.3=pyhd8ed1ab_0
- qtpy=1.9.0=py_0
- r-assertthat=0.2.1=r40h6115d3f_2
- r-backports=1.2.1=r40h066c5db_0
- r-base=4.0.3=hb6e1b8c_8
- r-base64enc=0.1_3=r40h17f1fa6_1004
- r-bitops=1.0_6=r40h17f1fa6_1004
- r-brio=1.1.1=r40h066c5db_0
- r-callr=3.6.0=r40hc72bb7e_0
- r-cli=2.3.1=r40hc72bb7e_0
- r-codetools=0.2_18=r40hc72bb7e_0
- r-colorspace=2.0_0=r40h6b199c2_0
- r-crayon=1.4.1=r40hc72bb7e_0
- r-desc=1.3.0=r40hc72bb7e_0
- r-diffobj=0.3.3=r40h066c5db_0
- r-digest=0.6.27=r40h342fd00_0
- r-dplyr=1.0.5=r40h9951f98_0
- r-ellipsis=0.3.1=r40h17f1fa6_0
- r-evaluate=0.14=r40h6115d3f_2
- r-fansi=0.4.2=r40h066c5db_0
- r-farver=2.1.0=r40h9951f98_0
- r-future=1.21.0=r40hc72bb7e_0
- r-future.apply=1.7.0=r40hc72bb7e_0
- r-generics=0.1.0=r40hc72bb7e_0
- r-ggplot2=3.3.3=r40hc72bb7e_0
- r-globals=0.14.0=r40hc72bb7e_0
- r-glue=1.4.2=r40h066c5db_0
- r-gtable=0.3.0=r40h6115d3f_3
- r-htmltools=0.5.1.1=r40h815b84a_0
- r-irdisplay=1.0=r40hd8ed1ab_0
- r-irkernel=1.1.1=r40h6115d3f_0
- r-isoband=0.2.4=r40h9951f98_0
- r-jsonlite=1.7.2=r40h066c5db_0
- r-labeling=0.4.2=r40h142f84f_0
- r-lattice=0.20_41=r40h066c5db_3
- r-lifecycle=1.0.0=r40hc72bb7e_0
- r-listenv=0.8.0=r40h6115d3f_1
- r-magrittr=2.0.1=r40h066c5db_1
- r-mass=7.3_53.1=r40hf6ff476_0
- r-matrix=1.3_2=r40h9a4b173_0
- r-matrixstats=0.58.0=r40hf6ff476_0
- r-mgcv=1.8_34=r40h9a4b173_0
- r-munsell=0.5.0=r40h6115d3f_1003
- r-nlme=3.1_152=r40h59bb11e_0
- r-parallelly=1.24.0=r40hc72bb7e_0
- r-pbdzmq=0.3_5=r40h5cc58b7_1
- r-pillar=1.5.1=r40hc72bb7e_0
- r-pkgbuild=1.2.0=r40hc72bb7e_0
- r-pkgconfig=2.0.3=r40h6115d3f_1
- r-pkgload=1.2.0=r40h4efb63e_0
- r-praise=1.0.0=r40h6115d3f_1004
- r-prettyunits=1.1.1=r40h6115d3f_1
- r-processx=3.5.0=r40h28b5c78_0
- r-ps=1.6.0=r40h28b5c78_0
- r-purrr=0.3.4=r40h17f1fa6_1
- r-r6=2.5.0=r40hc72bb7e_0
- r-rappdirs=0.3.3=r40hf6ff476_0
- r-rcolorbrewer=1.1_2=r40h6115d3f_1003
- r-rcpp=1.0.6=r40h815b84a_0
- r-rcurl=1.98_1.3=r40h28b5c78_0
- r-rematch2=2.1.2=r40h6115d3f_1
- r-repr=1.1.3=r40h785f33e_0
- r-reticulate=1.18=r40h4efb63e_0
- r-rlang=0.4.10=r40h066c5db_0
- r-rprojroot=2.0.2=r40hc72bb7e_0
- r-rstudioapi=0.13=r40hc72bb7e_0
- r-scales=1.1.1=r40h6115d3f_0
- r-testthat=3.0.2=r40h4efb63e_0
- r-tibble=3.1.0=r40h28b5c78_1
- r-tidyr=1.1.3=r40h9951f98_0
- r-tidyselect=1.1.0=r40h6115d3f_0
- r-utf8=1.2.1=r40h28b5c78_0
- r-uuid=0.1_4=r40h17f1fa6_1
- r-vctrs=0.3.7=r40h28b5c78_0
- r-viridislite=0.3.0=r40h6115d3f_1003
- r-waldo=0.2.5=r40hc72bb7e_0
- r-withr=2.4.1=r40hc72bb7e_0
- r-zeallot=0.1.0=r40h6115d3f_1002
- readline=8.1=h05e3726_0
- regex=2021.3.17=py37h271585c_0
- requests=2.25.1=pyhd3deb0d_0
- scikit-learn=0.24.1=py37hbcf18d0_0
- scipy=1.6.0=py37hc22aa43_0
- seaborn=0.11.0=0
- seaborn-base=0.11.0=pyhd8ed1ab_1
- send2trash=1.5.0=py_0
- setuptools=49.6.0=py37hf985489_3
- six=1.15.0=pyh9f0ad1d_0
- smmap=3.0.5=pyh44b312d_0
- sniffio=1.2.0=py37hf985489_1
- sqlite=3.35.3=h44b9ce1_0
- statsmodels=0.12.2=py37h183f225_0
- tapi=1100.0.11=h9ce4665_0
- tensorly=0.5.1=pyhd3deb0d_0
- terminado=0.9.4=py37hf985489_0
- testpath=0.4.4=py_0
- threadpoolctl=2.1.0=pyh5ca1d4c_0
- tk=8.6.10=h0419947_1
- tktable=2.10=h49f0cf7_3
- toml=0.10.2=pyhd8ed1ab_0
- tornado=6.1=py37hf967b71_1
- traitlets=5.0.5=py_0
- typed-ast=1.4.2=py37hf967b71_0
- typing_extensions=3.7.4.3=py_0
- urllib3=1.26.4=pyhd8ed1ab_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- wheel=0.36.2=pyhd3deb0d_0
- widgetsnbextension=3.5.1=py37hf985489_4
- xz=5.2.5=haf1e3a3_1
- zeromq=4.3.4=h1c7c35f_0
- zipp=3.4.1=pyhd8ed1ab_0
- zlib=1.2.11=h7795811_1010
- zstd=1.4.9=h582d3a0_0
prefix: /opt/conda/miniconda3/envs/interactome