setup.py

import os
import sys

from distutils.command.sdist import sdist
from setuptools import setup

PACKAGE_NAME = "tfce_mediation"
BUILD_REQUIRES = ["numpy", "scipy", "matplotlib", "nibabel", "cython", "scikit-learn", "scikit-image", "joblib", "pandas", "tqdm"]

CLASSIFIERS = ["Development Status :: 4 - Beta",
  "Environment :: Console",
  "Intended Audience :: Science/Research",
  "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
  "Operating System :: OS Independent",
  "Programming Language :: Python",
  "Topic :: Scientific/Engineering :: Medical Science Apps."]

def parse_setuppy_commands():
  info_commands = ['--help-commands', '--name', '--version', '-V',
    '--fullname', '--author', '--author-email',
    '--maintainer', '--maintainer-email', '--contact',
    '--contact-email', '--url', '--license', '--description',
    '--long-description', '--platforms', '--classifiers',
    '--keywords', '--provides', '--requires', '--obsoletes']
  info_commands.extend(['egg_info', 'install_egg_info', 'rotate'])
  for command in info_commands:
    if command in sys.argv[1:]:
      return False
  return True

def configuration(parent_package = "", top_path = None):
  from numpy.distutils.misc_util import Configuration
  CONFIG = Configuration(None)
  CONFIG.set_options(ignore_setup_xxx_py = True,
    assume_default_configuration = True,
    delegate_options_to_subpackages = True,
    quiet = True)

  CONFIG.add_scripts(os.path.join("bin", PACKAGE_NAME))
  CONFIG.add_scripts(os.path.join("bin", "tm_tools"))
  CONFIG.add_scripts(os.path.join("bin", "tm_maths"))
  CONFIG.add_scripts(os.path.join("bin", "tm_multimodal"))
  CONFIG.add_scripts(os.path.join("bin", "submit_condor_jobs_file"))

  CONFIG.add_subpackage(PACKAGE_NAME)

  return CONFIG

cmdclass = {"sdist": sdist}

if os.path.exists('MANIFEST'):
  os.remove('MANIFEST')

if parse_setuppy_commands():
  from numpy.distutils.core import setup

exec(open('tfce_mediation/version.py').read())
setup(name = PACKAGE_NAME, version = __version__,
  maintainer = "Tristram Lett",
  maintainer_email = "tristram.lett@charite.de",
  description = "TFCE_mediation",
  long_description = "Fast regression and mediation analysis of vertex or voxel MRI data with TFCE",
  url = "https://github.com/trislett/TFCE_mediation",
  download_url = "",
  platforms=["Linux", "Solaris", "Mac OS-X", "Unix"],
  license = "GNU General Public License v3 or later (GPLv3+)",
  classifiers = CLASSIFIERS,
  install_requires = BUILD_REQUIRES,
  zip_safe=False,
  cmdclass = cmdclass,
  configuration = configuration
)