Dockerfile.star-base-ubuntu18

FROM ubuntu:18.04

ENV DEBIAN_FRONTEND=noninteractive

WORKDIR /tmp

# Install system packages
COPY docker/packages.ubuntu /tmp/packages
RUN apt-get update -qq \
 && apt-get -y install $(cat packages) \
 && apt-get clean \
 && Rscript -e 'install.packages(c("RInside","Rcpp"), repos="https://cran.r-project.org")' \
 && localedef -i en_US -f UTF-8 en_US.UTF-8 \
 && rm -rf /var/lib/apt/lists/* /tmp/*

# Install python3.7 from a PPA and link python3 to it
RUN apt update \
 && apt install -y software-properties-common \
 && add-apt-repository ppa:deadsnakes/ppa \
 && apt update \
 && apt install -y python3.7 \
 && update-alternatives --install /usr/bin/python3 python3 /usr/bin/python3.7 1

# Install extra python modules used by the STAR software
RUN pip install pyparsing && pip3 install requests

# Install newer version of CMake
RUN curl https://cmake.org/files/v3.14/cmake-3.14.6.tar.gz | tar -xz -C /tmp \
 && cd /tmp/cmake-3.14.6 && ./bootstrap && make -j $(nproc) && make install \
 && rm -fr /tmp/*

# Install ROOT5
RUN curl https://root.cern.ch/download/root_v5.34.38.source.tar.gz | tar -xz -C /tmp \
 && mv /tmp/root /tmp/root-5-34-38 \
 && mkdir /tmp/root-build && cd /tmp/root-build \
 && cmake /tmp/root-5-34-38 \
    -DCMAKE_INSTALL_PREFIX=/usr/local \
    -Drpath=ON \
    -Dtable=ON \
    -Dpythia6=ON \
    -Dpythia6_nolink=ON \
    -Dvc=ON \
    -Dkrb5=OFF \
 && make -j $(nproc) \
 && make install \
 && rm -fr /tmp/*

# Install CERNLIB
COPY patches/cernlib_2006.patch scripts/build_cernlib.sh scripts/gdrive.py /tmp/
RUN mkdir /cern && cd /cern \
 && (curl -s -f https://cernlib.web.cern.ch/cernlib/download/2006_source/tar/2006_src.tar.gz || \
     python3 /tmp/gdrive.py 10eu5fwq_jDMrl0ludu2keQwamBam0dc7) | tar -xz -C /cern \
 && patch -p0 < /tmp/cernlib_2006.patch \
 && /tmp/build_cernlib.sh \
 && rm -fr /cern/2006/src /cern/2006/log /cern/2006/build /tmp/*

# Install Eigen 3.3.4
WORKDIR /tmp
RUN curl https://bitbucket.org/eigen/eigen/get/3.3.4.tar.gz | tar -xz -C /tmp \
 && mkdir /tmp/eigen-build && cd /tmp/eigen-build \
 && cmake /tmp/eigen-eigen-5a0156e40feb -DCMAKE_INSTALL_PREFIX=/usr/local \
 && make install \
 && rm -fr /tmp/*