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validate.yml
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name: Build the IG
on: [pull_request]
jobs:
validate:
runs-on: ubuntu-latest
strategy:
fail-fast: false
steps:
- uses: actions/checkout@v3
- uses: actions/setup-java@v3
with:
distribution: "temurin"
java-version: "17"
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: '3.10'
# Install ruby
# https://github.com/ruby/setup-ruby
- uses: ruby/setup-ruby@v1
with:
ruby-version: "3.2"
# Install Jekyll
# https://jekyllrb.com/docs/installation/ubuntu/
- name: "Install Jekyll"
shell: bash
run: |
gem install jekyll bundler
jekyll -v
# Install node if SUSHI is needed
# https://github.com/actions/setup-node
- name: "Install Node.js"
uses: actions/setup-node@v3
with:
node-version: "18"
# Install SUSHI if needed
- name: "Install SUSHI"
shell: bash
run: |
npm install -g [email protected]
sushi --version
sushi .
# Install GOFSH if needed
- name: "Install GOFSH"
shell: bash
run: |
npm install -g [email protected]
gofsh --version
# Install reproschema2fhir if needed
- name: Checkout
uses: actions/checkout@v4
with:
repository: kind-lab/reproschema-to-fhir
submodules: 'true'
path: './tofsh'
ssh-key: ${{ secrets.SSH_DEPLOY_KEY }}
# Call Gofsh if needed
- name: Checkout
shell: bash
run: |
cd ./tofsh
pip install -e .
touch .env
git submodule update --init --recursive
echo -e "CODESYSTEM_URI = https://voicecollab.ai/fhir/CodeSystem/" >> .env
echo -e "VALUESET_URI = https://voicecollab.ai/fhir/ValueSet/" >> .env
echo -e "QUESTIONNAIRE_URI = https://voicecollab.ai/fhir/Questionnaire/" >> .env
echo -e "QUESTIONNAIRE_LANGUAGE = en" >> .env
echo -e "FHIR_QUESTIONNAIRE_MODE = AnswerOptions" >> .env
./job.sh
cd ..
cp -r ./tofsh/output/ fsh_files
gofsh fsh_files
rm -r ./input/fsh
cp -r gofsh/input/fsh ./input/fsh
sushi .
- name: "Download the IG Publisher"
shell: bash
run: |
mkdir ./input-cache
curl -sS -L https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -o ./input-cache/publisher.jar
chmod +x ./input-cache/publisher.jar
- name: "Create IG"
shell: bash
run: |
java -jar -Xms4096M -Xmx6144M -XX:NewRatio=1 -XX:-UseAdaptiveSizePolicy input-cache/publisher.jar ig.ini