DESCRIPTION

Package: VisCello.celegans
Type: Package
Title: A visualization tool for single cell data of C.elegans embrogenesis
Version: 1.1.0
Author: Qin Zhu, Jonathan Packer, Junyhong Kim, John I. Murray, Robert H. Waterston
Maintainer: Qin Zhu <zhuqin@pennmedicine.upenn.edu>
Description: A visualization tool for C.elegans scRNA-Seq data. Also applicable to other scRNA-Seq/scATAC-Seq data as a hosting, exploration and analysis platfrom (see VisCello). 
Depends:
    R (>= 3.5.0),
    shiny,
    shinyBS,
    shinycssloaders,
    shinyWidgets,
    htmlwidgets,
    shinyBS,
    R.utils,
    purrr,
    ggplot2,
    RColorBrewer,
    reshape2,
    gridExtra,
    shinythemes,
    plotly,
    heatmaply,
    pheatmap,
    DT,
    dplyr,
    openxlsx,
    knitr,
    monocle,
    clusterProfiler,
    celegans.db,
    ggraph,
    tidygraph,
    data.table,
    ggtree,
    treeio
Imports:
    reticulate,
    limma,
    irlba,
    colourpicker
License: GPL-2
Encoding: UTF-8
LazyData: true
biocViews: Software, Sequencing, RNASeq, GeneExpression, DifferentialExpression, AnnotationData,
        Caenorhabditis_elegans
RoxygenNote: 7.1.1