pyproject.toml

[build-system]
requires = ["setuptools"]
build-backend = "setuptools.build_meta"

[project]
name = "ncbi-acc-download"
authors = [{ name = "Kai Blin", email = "kblin@biosustain.dtu.dk" }]
description = "Download genome files from NCBI by accession."
readme = "README.md"
dependencies = ["requests"]
requires-python = ">=3.8"
license = { file = "LICENSE" }
classifiers = [
	"Programming Language :: Python",
	"Development Status :: 3 - Alpha",
	"Intended Audience :: Science/Research",
	"Topic :: Scientific/Engineering :: Bio-Informatics",
	"License :: OSI Approved :: Apache Software License",
	"Operating System :: OS Independent",
]
dynamic = ["version"]

[project.optional-dependencies]
recursive = ["biopython >= 1.79"]
validate = ["biopython >= 1.79"]
testing = [
	"pytest",
	"coverage",
	"pytest-cov",
	"requests-mock",
	"pytest-mock",
	"flake8",
	"ruff",
]

[project.scripts]
ncbi-acc-download = "ncbi_acc_download.__main__:main"
nad = "ncbi_acc_download.__main__:main"

[project.urls]
Homepage = "https://github.com/kblin/ncbi-acc-download"
Issues = "https://github.com/kblin/ncbi-acc-download/issues"

[tool.setuptools]
packages = ["ncbi_acc_download"]

[tool.setuptools.dynamic]
version = { attr = "ncbi_acc_download.__version__" }

[tool.ruff]
line-length = 120

[tool.ruff.lint]
select = [
	# pycodestyle
	"E",
	# Pyflakes
	"F",
	#	# pyupgrade  # don't enable this yet
	#"UP",
	# flake8-bugbear
	"B",
]