v0.15.5

2024-01-17

Changed

• Misc: Neater handling of strings for tests.
• Misc: Better examples for merging trees and weighted trees in Sphinx documentation.
• Misc: Fix links and introduce unreleased segment in CHANGELOG.

What's Changed

• Changed: Neater handling of strings for tests by @kayjan in #161
• Changed: Example for sphinx examples for merging trees and weighted t… by @kayjan in #162
• V0.15.5 by @kayjan in #163

Full Changelog: 0.15.4...0.15.5

v0.15.4

2024-01-11

Changed

• Tree Exporter: hprint_tree and hyield_tree to allow hiding names of intermediate node.

Fixed

• Tree Constructor: newick_to_tree to handle invalid closing and use of apostrophe.
• Tree Exporter: tree_to_newick to handle special characters by wrapping them in apostrophe.

What's Changed

• Fixed: Highlight lines in README by @kayjan in #157
• Serialize newick export by @kayjan in #158
• Hyield add arg by @kayjan in #159
• v0.15.4 by @kayjan in #160

Full Changelog: 0.15.3...0.15.4

v0.15.3

2024-01-08

Added

• Tree Helper: get_subtree method to retrieve subtree.

What's Changed

• Added: get_subtree method + docstring examples + update README by @kayjan in #156

Full Changelog: 0.15.2...0.15.3

v0.15.2

2024-01-08

Added

• Tree Exporter: hprint_tree and hyield_tree to print and retrieve results for tree in horizontal orientation.
• Node: Added hshow method to print tree in horizontal orientation to console.

What's Changed

• Feature/hprint tree by @kayjan in #153
• V0.15.1 by @kayjan in #154
• v0.15.2 by @kayjan in #155

Full Changelog: 0.15.1...0.15.2

v0.15.1

2024-01-05

Added

• Tree Constructor: newick_to_tree to convert Newick notation to tree.

Changed

• Tree Exporter: tree_to_newick to accept more parameters to parse length and attributes.

Fixed

• Misc: Automated doctest setup to use os operations instead of string operations.

What's Changed

• Enhance newick by @kayjan in #146
• Fixed: conf.py reusable os codes by @kayjan in #147
• Abstract newick by @kayjan in #148
• Newick changes by @kayjan in #149
• Feature newick to tree by @kayjan in #150
• V0.15.1 by @kayjan in #151
• v0.15.1 by @kayjan in #152

Full Changelog: 0.15.0...0.15.1

v0.15.0

2024-01-02

Added

• Tree Exporter: Export to Newick notation with tree_to_newick.

Changed

• Tree Helper: Pruning tree to support pruning of multiple paths (accepts list of string).
• Tree Helper: Pruning tree to support pruning of an exact path (i.e., remove descendants) with exact parameter, default is prune and keep descendants.

What's Changed

• Changed: Updated examples in README by @kayjan in #141
• Update CHANGELOG.md by @kayjan in #142
• Enhance pruning by @kayjan in #143
• v0.15.0 by @kayjan in #144
• Changed: Update README to show newick export examples by @kayjan in #145

Full Changelog: 0.14.8...0.15.0

v0.14.8

2023-12-25

Changed

• Tree Modifier: Enhance documentation examples.
• Workflow To Do App: Change import and export logic.
• Misc: Organize assets folder based on whether it originated from README, docstrings, or sphinx documentation.
• Misc: Rename functions in plot.py utils file for coverage report.

Fixed

• Misc: Fixed doctests and automate doctest checks.

What's Changed

• Update docs.yml by @kayjan in #136
• Update docs.yml by @kayjan in #137
• Enhance docstring by @kayjan in #138
• Changed: Enhance docstring examples for tree modify functions by @kayjan in #139
• Enhance docstr by @kayjan in #140

Full Changelog: 0.14.7...0.14.8

v0.14.7

2023-12-22

Changed

• Tree Helper: get_tree_diff enhanced to compare tree attributes by taking in attr_list parameter, and indicates difference with (~).

Fixed

• Tree Helper: get_tree_diff compare tree structure by considering all nodes (previously only consider leaf nodes).

What's Changed

• Changed: get_tree_diff method to compare structure and attributes by @kayjan in #134
• V0.14.7 by @kayjan in #135

Full Changelog: 0.14.6...0.14.7

v0.14.6

2023-12-14

Added

• Node: Able to access and delete node children via name with square bracket accessor with __getitem__ and __delitem__ magic methods.
• BaseNode/Node/BinaryNode: Able to add one or more children with append and extend methods.
• BaseNode/Node/BinaryNode: Able to check if node contains child node with __contains__ magic method.
• BaseNode/Node/BinaryNode: Able to iterate the node to access children with __iter__ magic method. Results in children setter to only accept list/tuple/set instead of iterable types.

Changed

• Tree Exporter: tree_to_dot accepts callable to set node and edge attrs for custom node (backward-compatible).
• Tree Exporter: tree_to_mermaid accepts callable to set node shape attr, edge arrow attr and node attr for custom node (backward-compatible).
• Tree Exporter: Change delimiter for tree_to_mermaid to prevent possible path confusion (backward-compatible).
• Misc: Code abstraction for assertion checks and constants.
• Misc: Documentation for exporting tree/dag to dot.

What's Changed

• Fix: Highlight to span whole row by @kayjan in #126
• Fix: Documentation highlight css by @kayjan in #127
• Change toctree in docs by @kayjan in #128
• Added: Examples in docstring on displaying pydot with IPython by @kayjan in #130
• Change: Mermaid delimiter, abstract assertions and constants to anoth… by @kayjan in #131
• Add magic methods by @kayjan in #133

Full Changelog: 0.14.5...0.14.6

v0.14.5

2023-11-24

Changed

• Misc: Update SECURITY file.
• Misc: Documentation enhancement to add more emoji, and highlight code blocks.

What's Changed

• Fix: v0.14.4 by @kayjan in #121
• Fix: Github action dependency by @kayjan in #122
• update SECURITY file by @kayjan in #123
• Documentation enhancement to highlight code blocks by @kayjan in #124
• V0.14.5 by @kayjan in #125

Full Changelog: 0.14.4...0.14.5