_pkgdown.yml

url: https://massbays-tech.github.io/MassWateR
template:
  bootstrap: 5
  assets: inst/extdata

navbar:
  structure:
    left:  [intro, reference, articles, resources, tutorials, news]
    right: [search, github]
  components:
    reference:
      text: Functions
      href: reference/index.html
    resources:
      text: Resources
      href: RESOURCES.html
    
articles: 
- title: Get Started
  navbar: ~
  contents:
  - MassWateR
- title: Articles
  navbar: ~
  contents: 
  - inputs
  - outlierchecks
  - qcoverview
  - analysis
  - utility
  - modifying
  - wqx
  - outofstate

reference:
- title: Read, check, and format data
  desc: >
    Functions for importing, checking, and formatting the results and data quality objectives data.
  contents:
  - readMWRresults
  - readMWRresultsview
  - checkMWRresults
  - formMWRresults
  - readMWRacc
  - checkMWRacc
  - formMWRacc
  - readMWRfrecom
  - checkMWRfrecom
  - formMWRfrecom
  - readMWRsites
  - checkMWRsites
  - readMWRwqx
  - checkMWRwqx
  - formMWRwqx
- title: Outlier analysis
  desc: > 
    Functions for evaluating outliers as plots and generating tabular output.
  contents:
  - anlzMWRoutlier
  - anlzMWRoutlierall
- title: Quality control checks, table and report creation
  desc: >
    Functions for running quality control checks, generating tables, and creating the overall report. 
  contents:
  - qcMWRreview
  - qcMWRacc
  - tabMWRacc
  - qcMWRfre
  - tabMWRfre
  - qcMWRcom
  - tabMWRcom
  - tabMWRwqx
- title: General analysis
  desc: >
    Functions for creating analysis plots of the results data.
  contents: 
  - anlzMWRseason
  - anlzMWRdate
  - anlzMWRsite
  - anlzMWRmap
- title: Utility functions
  desc: >
    This is a collection of functions used internally by all other functions.  They are not to be called directly. 
  contents: 
  - utilMWRfilter
  - utilMWRfiltersurface
  - utilMWRhttpgrace
  - utilMWRinput
  - utilMWRinputcheck
  - utilMWRlimits
  - utilMWRsumfun
  - utilMWRsummary
  - utilMWRthresh
  - utilMWRtitle
  - utilMWRyscale
  - utilMWRoutlier
- title: Supplementary datasets
  desc: >
    Supplementary datasets for the read, quality control, and analysis functions.
  contents:
  - paramsMWR
  - thresholdMWR