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sub_genelistvar.sh
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sub_genelistvar.sh
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#!/bin/bash
#$-cwd
perl ~/bin/Generate_Gene_ListVariants_From_Gene_File_0_1_4.pl --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000013573-ASM/GS01144-DNA_B01/ASM/gene-GS000013573-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000012340-ASM/GS01144-DNA_A01/ASM/gene-GS000012340-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000010151-ASM/GS00902-DNA_D05/ASM/gene-GS000010151-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000009301-ASM/GS01144-DNA_C01/ASM/gene-GS000009301-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000009069-ASM/GS01156-DNA_A01/ASM/gene-GS000009069-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008127-ASM/GS00902-DNA_B11/ASM/gene-GS000008127-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008126-ASM/GS00902-DNA_A11/ASM/gene-GS000008126-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008161-ASM/GS00902-DNA_B08/ASM/gene-GS000008161-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008160-ASM/GS00902-DNA_F06/ASM/gene-GS000008160-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008072-ASM/GS01132-DNA_F03/ASM/gene-GS000008072-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008061-ASM/GS01132-DNA_C03/ASM/gene-GS000008061-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008085-ASM/GS00902-DNA_F05/ASM/gene-GS000008085-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008082-ASM/GS01132-DNA_H04/ASM/gene-GS000008082-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008080-ASM/GS01132-DNA_F04/ASM/gene-GS000008080-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008084-ASM/GS01132-DNA_B05/ASM/gene-GS000008084-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008071-ASM/GS01132-DNA_E03/ASM/gene-GS000008071-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008076-ASM/GS01132-DNA_B04/ASM/gene-GS000008076-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008079-ASM/GS00902-DNA_E04/ASM/gene-GS000008079-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008074-ASM/GS01132-DNA_H03/ASM/gene-GS000008074-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008077-ASM/GS01132-DNA_C04/ASM/gene-GS000008077-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008078-ASM/GS01132-DNA_D04/ASM/gene-GS000008078-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008083-ASM/GS01132-DNA_A05/ASM/gene-GS000008083-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008073-ASM/GS01132-DNA_G03/ASM/gene-GS000008073-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008075-ASM/GS01132-DNA_A04/ASM/gene-GS000008075-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008081-ASM/GS01132-DNA_G04/ASM/gene-GS000008081-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008086-ASM/GS00902-DNA_D06/ASM/gene-GS000008086-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008058-ASM/GS01132-DNA_H02/ASM/gene-GS000008058-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007874-ASM/GS01132-DNA_B09/ASM/gene-GS000007874-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008042-ASM/GS01132-DNA_E04/ASM/gene-GS000008042-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008041-ASM/GS00899-DNA_F01/ASM/gene-GS000008041-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007873-ASM/GS01132-DNA_A09/ASM/gene-GS000007873-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008045-ASM/GS01132-DNA_C01/ASM/gene-GS000008045-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008044-ASM/GS01132-DNA_B01/ASM/gene-GS000008044-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008043-ASM/GS01132-DNA_A01/ASM/gene-GS000008043-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008046-ASM/GS01132-DNA_D01/ASM/gene-GS000008046-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008059-ASM/GS01132-DNA_A03/ASM/gene-GS000008059-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008050-ASM/GS01132-DNA_H01/ASM/gene-GS000008050-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008062-ASM/GS01132-DNA_D03/ASM/gene-GS000008062-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008051-ASM/GS01132-DNA_A02/ASM/gene-GS000008051-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008049-ASM/GS01132-DNA_G01/ASM/gene-GS000008049-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008048-ASM/GS01132-DNA_F01/ASM/gene-GS000008048-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008052-ASM/GS01132-DNA_B02/ASM/gene-GS000008052-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008054-ASM/GS01132-DNA_D02/ASM/gene-GS000008054-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008060-ASM/GS01132-DNA_B03/ASM/gene-GS000008060-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008055-ASM/GS01132-DNA_E02/ASM/gene-GS000008055-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008047-ASM/GS01132-DNA_E01/ASM/gene-GS000008047-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008053-ASM/GS01132-DNA_C02/ASM/gene-GS000008053-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008056-ASM/GS01132-DNA_F02/ASM/gene-GS000008056-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000008057-ASM/GS01132-DNA_G02/ASM/gene-GS000008057-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007831-ASM/GS01132-DNA_E09/ASM/gene-GS000007831-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007842-ASM/GS01132-DNA_C11/ASM/gene-GS000007842-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007841-ASM/GS01132-DNA_H10/ASM/gene-GS000007841-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007872-ASM/GS01132-DNA_H08/ASM/gene-GS000007872-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007867-ASM/GS01132-DNA_A11/ASM/gene-GS000007867-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007870-ASM/GS01132-DNA_E08/ASM/gene-GS000007870-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007871-ASM/GS01132-DNA_G08/ASM/gene-GS000007871-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007868-ASM/GS01132-DNA_C08/ASM/gene-GS000007868-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007869-ASM/GS01132-DNA_D08/ASM/gene-GS000007869-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007846-ASM/GS01132-DNA_G11/ASM/gene-GS000007846-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007833-ASM/GS01132-DNA_H09/ASM/gene-GS000007833-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007832-ASM/GS01132-DNA_G09/ASM/gene-GS000007832-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007837-ASM/GS01132-DNA_D10/ASM/gene-GS000007837-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007838-ASM/GS01132-DNA_E10/ASM/gene-GS000007838-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007847-ASM/GS01132-DNA_H11/ASM/gene-GS000007847-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007839-ASM/GS01132-DNA_F10/ASM/gene-GS000007839-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007830-ASM/GS01132-DNA_D09/ASM/gene-GS000007830-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007840-ASM/GS01132-DNA_G10/ASM/gene-GS000007840-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007829-ASM/GS01132-DNA_C09/ASM/gene-GS000007829-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007818-ASM/GS01132-DNA_G06/ASM/gene-GS000007818-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007835-ASM/GS01132-DNA_B10/ASM/gene-GS000007835-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007845-ASM/GS01132-DNA_F11/ASM/gene-GS000007845-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007836-ASM/GS01132-DNA_C10/ASM/gene-GS000007836-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007844-ASM/GS01132-DNA_E11/ASM/gene-GS000007844-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007843-ASM/GS01132-DNA_D11/ASM/gene-GS000007843-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007834-ASM/GS01132-DNA_A10/ASM/gene-GS000007834-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007696-ASM/GS01132-DNA_E06/ASM/gene-GS000007696-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007700-ASM/GS01132-DNA_B07/ASM/gene-GS000007700-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007755-ASM/GS01132-DNA_B08/ASM/gene-GS000007755-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007702-ASM/GS01132-DNA_D07/ASM/gene-GS000007702-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007699-ASM/GS01132-DNA_A07/ASM/gene-GS000007699-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007698-ASM/GS01132-DNA_H06/ASM/gene-GS000007698-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007691-ASM/GS01132-DNA_G05/ASM/gene-GS000007691-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007695-ASM/GS01132-DNA_C06/ASM/gene-GS000007695-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007693-ASM/GS01132-DNA_A06/ASM/gene-GS000007693-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007754-ASM/GS01132-DNA_A08/ASM/gene-GS000007754-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007694-ASM/GS01132-DNA_B06/ASM/gene-GS000007694-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007753-ASM/GS01132-DNA_H07/ASM/gene-GS000007753-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007690-ASM/GS01132-DNA_E05/ASM/gene-GS000007690-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007736-ASM/GS01132-DNA_F07/ASM/gene-GS000007736-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007701-ASM/GS01132-DNA_C07/ASM/gene-GS000007701-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007689-ASM/GS01132-DNA_C05/ASM/gene-GS000007689-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007692-ASM/GS01132-DNA_H05/ASM/gene-GS000007692-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007703-ASM/GS01132-DNA_E07/ASM/gene-GS000007703-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007749-ASM/GS01132-DNA_D05/ASM/gene-GS000007749-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007737-ASM/GS01132-DNA_G07/ASM/gene-GS000007737-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007751-ASM/GS01132-DNA_D06/ASM/gene-GS000007751-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007750-ASM/GS01132-DNA_F05/ASM/gene-GS000007750-ASM.tsv.bz2 --Input_File /ober_resources/CGI_98Hutterites_WGS/GS000007752-ASM/GS01132-DNA_F06/ASM/gene-GS000007752-ASM.tsv.bz2 --Output_Dir /clustb/jxchong/CGI_WGS --Output_File all.2012-09-20.genelistvar.tsv
bzip2 /clustb/jxchong/CGI_WGS/all.2012-09-20.genelistvar.tsv
cp /clustb/jxchong/CGI_WGS/all.2012-09-20.genelistvar.tsv.bz2 /clusta/jxchong/CGI_WGS/all.2012-09-20.genelistvar.tsv.bz2