From 9200784b1bc743f75db18ac39cb1bdeffc4202fe Mon Sep 17 00:00:00 2001 From: John Wu Date: Thu, 2 Dec 2021 16:50:38 -0500 Subject: [PATCH 1/2] make new requirements --- README.md | 4 +- requirements.txt | 208 +++++--------------------------- requirements_at_publication.txt | 179 +++++++++++++++++++++++++++ 3 files changed, 210 insertions(+), 181 deletions(-) create mode 100644 requirements_at_publication.txt diff --git a/README.md b/README.md index 48d554c..3b6d6ed 100644 --- a/README.md +++ b/README.md @@ -24,12 +24,12 @@ In addition to the stellar mass dependence, we also find a modest increase in sa Satellite radial profiles as a function of host stellar mass, separated into disky and elliptical morphologies. Figure 7 from the xSAGA I paper. -### The satellite abundance correlates strongly with the magnitude gap between a host and its brightest satellite.** +### The satellite abundance correlates strongly with the magnitude gap between a host and its brightest satellite. In the figure below, we now compute the total number of satellites within the projected virial radius, and plot it against the magnitude gap and host stellar mass. The satellite abudance within the virial radius as a function of magnitude gap and host stellar mass. Figure 12 from the xSAGA I paper. -### "xSAGA confirms and extends key SAGA Survey results. +### xSAGA confirms and extends key SAGA Survey results. We compare the radial profiles of satellites around isolated host galaxies in the same stellar mass range as SAGA (1010–1011 M⊙; see figure below). Our results are in excellent agreement. Part of Figure 6 from the xSAGA I paper. diff --git a/requirements.txt b/requirements.txt index 8c7d5d9..5c5ee11 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,179 +1,29 @@ -# This file may be used to create an environment using: -# $ conda create --name --file -# platform: linux-64 -abundancematching=0.3.0=pypi_0 -argon2-cffi=20.1.0=py38h7b6447c_1 -astroml=0.4.1=pypi_0 -astropy=4.0.1.post1=py38h1e0a361_0 -async_generator=1.10=py_0 -attrs=20.2.0=py_0 -backcall=0.2.0=py_0 -blas=1.0=mkl -bleach=3.2.1=py_0 -brotlipy=0.7.0=py38h7b6447c_1000 -bzip2=1.0.8=h516909a_3 -c-ares=1.16.1=h516909a_3 -ca-certificates=2020.7.22=0 -catalogue=1.0.0=py38_1 -certifi=2020.6.20=py38_0 -cffi=1.14.3=py38he30daa8_0 -chardet=3.0.4=py38_1003 -cmasher=1.5.7=pypi_0 -colorspacious=1.1.2=pypi_0 -colossus=1.2.19=pypi_0 -cramjam=2.3.2=pypi_0 -cryptography=3.1.1=py38h1ba5d50_0 -cudatoolkit=10.2.89=hfd86e86_1 -cycler=0.10.0=py38_0 -cymem=2.0.3=py38he6710b0_0 -cython-blis=0.4.1=py38h7b6447c_1 -dbus=1.13.12=h746ee38_0 -decorator=4.4.2=py_0 -defusedxml=0.6.0=py_0 -e13tools=0.9.5=pypi_0 -easyquery=0.1.6=pypi_0 -emcee=3.1.1=pypi_0 -entrypoints=0.3=py38_0 -expat=2.2.9=he6710b0_2 -fastai=2.0.13=py_0 -fastcore=1.0.15=py_0 -fastparquet=0.6.3=pypi_0 -fastprogress=1.0.0=pyh39e3cac_0 -fitsio=1.1.2=py38hff5d36a_0 -fontconfig=2.13.0=h9420a91_0 -freetype=2.10.2=h5ab3b9f_0 -fsspec=2021.6.1=pypi_0 -future=0.18.2=py38h32f6830_1 -galcheat=0.0.4=pypi_0 -glib=2.56.2=hd408876_0 -gst-plugins-base=1.14.0=hbbd80ab_1 -gstreamer=1.14.0=hb453b48_1 -icu=58.2=he6710b0_3 -idna=2.10=py_0 -importlib-metadata=1.7.0=py38_0 -importlib_metadata=1.7.0=0 -intel-openmp=2020.2=254 -ipykernel=5.3.4=py38h5ca1d4c_0 -ipython=7.18.1=py38h5ca1d4c_0 -ipython_genutils=0.2.0=py38_0 -ipywidgets=7.5.1=py_0 -jedi=0.17.2=py38_0 -jinja2=2.11.2=py_0 -joblib=0.16.0=py_0 -jpeg=9b=habf39ab_1 -jsonschema=3.0.2=py38_0 -jupyter=1.0.0=py38_7 -jupyter_client=6.1.7=py_0 -jupyter_console=6.2.0=py_0 -jupyter_core=4.6.3=py38_0 -jupyterlab_pygments=0.1.1=py_0 -kiwisolver=1.2.0=py38hfd86e86_0 -krb5=1.17.1=hfafb76e_3 -lcms2=2.11=h396b838_0 -ld_impl_linux-64=2.33.1=h53a641e_7 -libcurl=7.71.1=hcdd3856_6 -libedit=3.1.20191231=h14c3975_1 -libev=4.33=h516909a_1 -libffi=3.3=he6710b0_2 -libgcc-ng=9.1.0=hdf63c60_0 -libgfortran-ng=7.3.0=hdf63c60_0 -libnghttp2=1.41.0=h8cfc5f6_2 -libpng=1.6.37=hbc83047_0 -libsodium=1.0.18=h7b6447c_0 -libssh2=1.9.0=hab1572f_5 -libstdcxx-ng=9.1.0=hdf63c60_0 -libtiff=4.1.0=h2733197_1 -libuuid=1.0.3=h1bed415_2 -libxcb=1.14=h7b6447c_0 -libxml2=2.9.10=he19cac6_1 -lsstdesc.coord=1.2.1=py38hbf85e49_0 -lz4-c=1.9.2=he6710b0_1 -markupsafe=1.1.1=py38h7b6447c_0 -matplotlib=3.3.1=0 -matplotlib-base=3.3.1=py38h817c723_0 -mistune=0.8.4=py38h7b6447c_1000 -mkl=2019.4=243 -mkl-service=2.3.0=py38he904b0f_0 -mkl_fft=1.2.0=py38h23d657b_0 -mkl_random=1.1.0=py38h962f231_0 -murmurhash=1.0.2=py38he6710b0_0 -nbclient=0.5.0=py_0 -nbconvert=6.0.6=py38_0 -nbformat=5.0.7=py_0 -ncurses=6.2=he6710b0_1 -nest-asyncio=1.4.0=py_1 -ninja=1.10.1=py38hfd86e86_0 -notebook=6.1.1=py38_0 -numexpr=2.7.3=pypi_0 -numpy=1.19.1=py38hbc911f0_0 -numpy-base=1.19.1=py38hfa32c7d_0 -olefile=0.46=py_0 -openssl=1.1.1h=h516909a_0 -packaging=20.4=py_0 -pandas=1.1.1=py38he6710b0_0 -pandoc=2.10.1=0 -pandocfilters=1.4.2=py38_1 -parso=0.7.0=py_0 -pcre=8.44=he6710b0_0 -pexpect=4.8.0=py38_0 -pickleshare=0.7.5=py38_1000 -pillow=7.2.0=py38hb39fc2d_0 -pip=20.2.2=py38_0 -plac=0.9.6=py38_1 -preshed=3.0.2=py38he6710b0_1 -prometheus_client=0.8.0=py_0 -prompt-toolkit=3.0.7=py_0 -prompt_toolkit=3.0.7=0 -ptyprocess=0.6.0=py38_0 -pycparser=2.20=py_2 -pygments=2.7.1=py_0 -pyopenssl=19.1.0=py_1 -pyparsing=2.4.7=py_0 -pyqt=5.9.2=py38h05f1152_4 -pyrsistent=0.17.3=py38h7b6447c_0 -pysocks=1.7.1=py38_0 -python=3.8.5=h7579374_1 -python-dateutil=2.8.1=py_0 -python_abi=3.8=1_cp38 -pytorch=1.6.0=py3.8_cuda10.2.89_cudnn7.6.5_0 -pytz=2020.1=py_0 -pyyaml=5.3.1=py38h7b6447c_1 -pyzmq=19.0.2=py38he6710b0_1 -qt=5.9.7=h5867ecd_1 -qtconsole=4.7.7=py_0 -qtpy=1.9.0=py_0 -readline=8.0=h7b6447c_0 -requests=2.24.0=py_0 -scikit-learn=0.23.2=py38h0573a6f_0 -scipy=1.5.2=py38h0b6359f_0 -seaborn=0.11.1=pypi_0 -send2trash=1.5.0=py38_0 -setuptools=49.6.0=py38_0 -sip=4.19.24=py38he6710b0_0 -six=1.15.0=py_0 -spacy=2.3.2=py38hfd86e86_0 -sqlite=3.33.0=h62c20be_0 -srsly=1.0.2=py38he6710b0_0 -terminado=0.8.3=py38_0 -testpath=0.4.4=py_0 -thinc=7.4.1=py38hfd86e86_0 -threadpoolctl=2.1.0=pyh5ca1d4c_0 -thrift=0.13.0=pypi_0 -tk=8.6.10=hbc83047_0 -torchvision=0.7.0=py38_cu102 -tornado=6.0.4=py38h7b6447c_1 -tqdm=4.49.0=py_0 -traitlets=4.3.3=py38_0 -treecorr=4.1.5=py38h950e882_0 -urllib3=1.25.10=py_0 -wasabi=0.8.0=py_0 -wcwidth=0.2.5=py_0 -webencodings=0.5.1=py38_1 -wheel=0.35.1=py_0 -widgetsnbextension=3.5.1=py38_0 -xz=5.2.5=h7b6447c_0 -yaml=0.2.5=h7b6447c_0 -zeromq=4.3.2=he6710b0_3 -zipp=3.1.0=py_0 -zlib=1.2.11=h7b6447c_3 -zstd=1.4.4=h0b5b093_3 +astroml +astropy +cmasher +colossus +easyquery +fastai +fastcore +fastparquet +fastprogress +fitsio +ipykernel +ipython +jupyter +matplotlib +notebook +numexpr +numpy +pandas +pillow +pip +python +pytorch +requests +scikit-learn +scipy +torchvision +tqdm +treecorr +yaml \ No newline at end of file diff --git a/requirements_at_publication.txt b/requirements_at_publication.txt new file mode 100644 index 0000000..8c7d5d9 --- /dev/null +++ b/requirements_at_publication.txt @@ -0,0 +1,179 @@ +# This file may be used to create an environment using: +# $ conda create --name --file +# platform: linux-64 +abundancematching=0.3.0=pypi_0 +argon2-cffi=20.1.0=py38h7b6447c_1 +astroml=0.4.1=pypi_0 +astropy=4.0.1.post1=py38h1e0a361_0 +async_generator=1.10=py_0 +attrs=20.2.0=py_0 +backcall=0.2.0=py_0 +blas=1.0=mkl +bleach=3.2.1=py_0 +brotlipy=0.7.0=py38h7b6447c_1000 +bzip2=1.0.8=h516909a_3 +c-ares=1.16.1=h516909a_3 +ca-certificates=2020.7.22=0 +catalogue=1.0.0=py38_1 +certifi=2020.6.20=py38_0 +cffi=1.14.3=py38he30daa8_0 +chardet=3.0.4=py38_1003 +cmasher=1.5.7=pypi_0 +colorspacious=1.1.2=pypi_0 +colossus=1.2.19=pypi_0 +cramjam=2.3.2=pypi_0 +cryptography=3.1.1=py38h1ba5d50_0 +cudatoolkit=10.2.89=hfd86e86_1 +cycler=0.10.0=py38_0 +cymem=2.0.3=py38he6710b0_0 +cython-blis=0.4.1=py38h7b6447c_1 +dbus=1.13.12=h746ee38_0 +decorator=4.4.2=py_0 +defusedxml=0.6.0=py_0 +e13tools=0.9.5=pypi_0 +easyquery=0.1.6=pypi_0 +emcee=3.1.1=pypi_0 +entrypoints=0.3=py38_0 +expat=2.2.9=he6710b0_2 +fastai=2.0.13=py_0 +fastcore=1.0.15=py_0 +fastparquet=0.6.3=pypi_0 +fastprogress=1.0.0=pyh39e3cac_0 +fitsio=1.1.2=py38hff5d36a_0 +fontconfig=2.13.0=h9420a91_0 +freetype=2.10.2=h5ab3b9f_0 +fsspec=2021.6.1=pypi_0 +future=0.18.2=py38h32f6830_1 +galcheat=0.0.4=pypi_0 +glib=2.56.2=hd408876_0 +gst-plugins-base=1.14.0=hbbd80ab_1 +gstreamer=1.14.0=hb453b48_1 +icu=58.2=he6710b0_3 +idna=2.10=py_0 +importlib-metadata=1.7.0=py38_0 +importlib_metadata=1.7.0=0 +intel-openmp=2020.2=254 +ipykernel=5.3.4=py38h5ca1d4c_0 +ipython=7.18.1=py38h5ca1d4c_0 +ipython_genutils=0.2.0=py38_0 +ipywidgets=7.5.1=py_0 +jedi=0.17.2=py38_0 +jinja2=2.11.2=py_0 +joblib=0.16.0=py_0 +jpeg=9b=habf39ab_1 +jsonschema=3.0.2=py38_0 +jupyter=1.0.0=py38_7 +jupyter_client=6.1.7=py_0 +jupyter_console=6.2.0=py_0 +jupyter_core=4.6.3=py38_0 +jupyterlab_pygments=0.1.1=py_0 +kiwisolver=1.2.0=py38hfd86e86_0 +krb5=1.17.1=hfafb76e_3 +lcms2=2.11=h396b838_0 +ld_impl_linux-64=2.33.1=h53a641e_7 +libcurl=7.71.1=hcdd3856_6 +libedit=3.1.20191231=h14c3975_1 +libev=4.33=h516909a_1 +libffi=3.3=he6710b0_2 +libgcc-ng=9.1.0=hdf63c60_0 +libgfortran-ng=7.3.0=hdf63c60_0 +libnghttp2=1.41.0=h8cfc5f6_2 +libpng=1.6.37=hbc83047_0 +libsodium=1.0.18=h7b6447c_0 +libssh2=1.9.0=hab1572f_5 +libstdcxx-ng=9.1.0=hdf63c60_0 +libtiff=4.1.0=h2733197_1 +libuuid=1.0.3=h1bed415_2 +libxcb=1.14=h7b6447c_0 +libxml2=2.9.10=he19cac6_1 +lsstdesc.coord=1.2.1=py38hbf85e49_0 +lz4-c=1.9.2=he6710b0_1 +markupsafe=1.1.1=py38h7b6447c_0 +matplotlib=3.3.1=0 +matplotlib-base=3.3.1=py38h817c723_0 +mistune=0.8.4=py38h7b6447c_1000 +mkl=2019.4=243 +mkl-service=2.3.0=py38he904b0f_0 +mkl_fft=1.2.0=py38h23d657b_0 +mkl_random=1.1.0=py38h962f231_0 +murmurhash=1.0.2=py38he6710b0_0 +nbclient=0.5.0=py_0 +nbconvert=6.0.6=py38_0 +nbformat=5.0.7=py_0 +ncurses=6.2=he6710b0_1 +nest-asyncio=1.4.0=py_1 +ninja=1.10.1=py38hfd86e86_0 +notebook=6.1.1=py38_0 +numexpr=2.7.3=pypi_0 +numpy=1.19.1=py38hbc911f0_0 +numpy-base=1.19.1=py38hfa32c7d_0 +olefile=0.46=py_0 +openssl=1.1.1h=h516909a_0 +packaging=20.4=py_0 +pandas=1.1.1=py38he6710b0_0 +pandoc=2.10.1=0 +pandocfilters=1.4.2=py38_1 +parso=0.7.0=py_0 +pcre=8.44=he6710b0_0 +pexpect=4.8.0=py38_0 +pickleshare=0.7.5=py38_1000 +pillow=7.2.0=py38hb39fc2d_0 +pip=20.2.2=py38_0 +plac=0.9.6=py38_1 +preshed=3.0.2=py38he6710b0_1 +prometheus_client=0.8.0=py_0 +prompt-toolkit=3.0.7=py_0 +prompt_toolkit=3.0.7=0 +ptyprocess=0.6.0=py38_0 +pycparser=2.20=py_2 +pygments=2.7.1=py_0 +pyopenssl=19.1.0=py_1 +pyparsing=2.4.7=py_0 +pyqt=5.9.2=py38h05f1152_4 +pyrsistent=0.17.3=py38h7b6447c_0 +pysocks=1.7.1=py38_0 +python=3.8.5=h7579374_1 +python-dateutil=2.8.1=py_0 +python_abi=3.8=1_cp38 +pytorch=1.6.0=py3.8_cuda10.2.89_cudnn7.6.5_0 +pytz=2020.1=py_0 +pyyaml=5.3.1=py38h7b6447c_1 +pyzmq=19.0.2=py38he6710b0_1 +qt=5.9.7=h5867ecd_1 +qtconsole=4.7.7=py_0 +qtpy=1.9.0=py_0 +readline=8.0=h7b6447c_0 +requests=2.24.0=py_0 +scikit-learn=0.23.2=py38h0573a6f_0 +scipy=1.5.2=py38h0b6359f_0 +seaborn=0.11.1=pypi_0 +send2trash=1.5.0=py38_0 +setuptools=49.6.0=py38_0 +sip=4.19.24=py38he6710b0_0 +six=1.15.0=py_0 +spacy=2.3.2=py38hfd86e86_0 +sqlite=3.33.0=h62c20be_0 +srsly=1.0.2=py38he6710b0_0 +terminado=0.8.3=py38_0 +testpath=0.4.4=py_0 +thinc=7.4.1=py38hfd86e86_0 +threadpoolctl=2.1.0=pyh5ca1d4c_0 +thrift=0.13.0=pypi_0 +tk=8.6.10=hbc83047_0 +torchvision=0.7.0=py38_cu102 +tornado=6.0.4=py38h7b6447c_1 +tqdm=4.49.0=py_0 +traitlets=4.3.3=py38_0 +treecorr=4.1.5=py38h950e882_0 +urllib3=1.25.10=py_0 +wasabi=0.8.0=py_0 +wcwidth=0.2.5=py_0 +webencodings=0.5.1=py38_1 +wheel=0.35.1=py_0 +widgetsnbextension=3.5.1=py38_0 +xz=5.2.5=h7b6447c_0 +yaml=0.2.5=h7b6447c_0 +zeromq=4.3.2=he6710b0_3 +zipp=3.1.0=py_0 +zlib=1.2.11=h7b6447c_3 +zstd=1.4.4=h0b5b093_3 From bf7d83f2c9b4e2644d88e6b50edb8da3ae9448e8 Mon Sep 17 00:00:00 2001 From: John Wu Date: Thu, 2 Dec 2021 16:51:56 -0500 Subject: [PATCH 2/2] add caveat about two sets of possible requirements --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 3b6d6ed..3e15b19 100644 --- a/README.md +++ b/README.md @@ -47,7 +47,7 @@ We define CNN-selected galaxies as satellite galaxies if they are within 300 pro ## Figures and Code -All figures presented in our paper can be reproduced by running the cells in the `paper-figures.ipynb` Jupyter notebook. The notebook can be accessed through the [nbviewer website](https://nbviewer.org/github/jwuphysics/xSAGA/blob/main/paper-figures.ipynb). +All figures presented in our paper can be reproduced by running the cells in the `paper-figures.ipynb` Jupyter notebook. The notebook can be accessed through the [nbviewer website](https://nbviewer.org/github/jwuphysics/xSAGA/blob/main/paper-figures.ipynb). Note that the requirements in `requirements_at_publication.txt` must be used; otherwise there is a chance that the dependencies won't match. The code used for this analysis can be found in `xsaga/`. Most of the relevant methods are located in `satellites.py` and `radial_profiles.py`.