LNX-docker-compose.yml

# PY_VER=3.8 MYSQL_VER=5.7 DISTRO=alpine MINIO_VER=RELEASE.2022-08-11T04-37-28Z HOST_UID=$(id -u) docker compose -f LNX-docker-compose.yml up --exit-code-from app --build
version: "2.4"
x-net:
  &net
  networks:
    - main
services:
  db:
    <<: *net
    image: datajoint/mysql:${MYSQL_VER}
    environment:
      - MYSQL_ROOT_PASSWORD=${DJ_PASS}
    # ports:
    #   - "3306:3306"
    # volumes:
    #   - ./mysql/data:/var/lib/mysql
    healthcheck:
      test: [ "CMD", "mysqladmin", "ping", "-h", "localhost" ]
      timeout: 30s
      retries: 5
      interval: 15s
  minio:
    <<: *net
    image: minio/minio:${MINIO_VER}
    environment:
      - MINIO_ACCESS_KEY=datajoint
      - MINIO_SECRET_KEY=datajoint
    # ports:
    #   - "9000:9000"
    # volumes:
    #   - ./minio/config:/root/.minio
    #   - ./minio/data:/data
    command: server --address ":9000" /data
    healthcheck:
      test:
        [
          "CMD",
          "curl",
          "--fail",
          "http://minio:9000/minio/health/live"
        ]
      timeout: 30s
      retries: 5
      interval: 15s
  fakeservices.datajoint.io:
    <<: *net
    image: datajoint/nginx:v0.2.5
    environment:
      - ADD_db_TYPE=DATABASE
      - ADD_db_ENDPOINT=db:3306
      - ADD_minio_TYPE=MINIO
      - ADD_minio_ENDPOINT=minio:9000
      - ADD_minio_PORT=80 # allow unencrypted connections
      - ADD_minio_PREFIX=/datajoint
    # ports:
    #   - "80:80"
    #   - "443:443"
    #   - "3306:3306"
  app:
    <<: *net
    image: datajoint/djtest:py${PY_VER}-${DISTRO}
    depends_on:
      db:
        condition: service_healthy
      minio:
        condition: service_healthy
      fakeservices.datajoint.io:
        condition: service_healthy
    environment:
      - DJ_HOST=fakeservices.datajoint.io
      - DJ_USER=root
      - DJ_PASS
      - DJ_TEST_HOST=fakeservices.datajoint.io
      - DJ_TEST_USER=datajoint
      - DJ_TEST_PASSWORD=datajoint
      - S3_ENDPOINT=fakeservices.datajoint.io
      - S3_ACCESS_KEY=datajoint
      - S3_SECRET_KEY=datajoint
      - S3_BUCKET=datajoint.test
      - PYTHON_USER=dja
      - JUPYTER_PASSWORD=datajoint
      - DISPLAY
    working_dir: /src
    command:
      - sh
      - -c
      - |
        set -e
        pip install --user nose nose-cov
        pip install -e .
        pip list --format=freeze | grep datajoint
        pytest -sv --cov-report term-missing --cov=datajoint tests
        nosetests -vsw tests_old --with-coverage --cover-package=datajoint
    # ports:
    #   - "8888:8888"
    user: ${HOST_UID}:anaconda
    volumes:
      - .:/src
      - /tmp/.X11-unix:/tmp/.X11-unix:rw
      # - ./notebooks:/home/dja/notebooks
networks:
  main: