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Scheduled weekly dependency update for week 33 #427

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Update pytest from 8.2.2 to 8.3.2.

Changelog

8.3.1

=========================

The 8.3.0 release failed to include the change notes and docs for the release. This patch release remedies this. There are no other changes.

8.3.0

=========================

New features
------------

- `12231 <https://github.com/pytest-dev/pytest/issues/12231>`_: Added `--xfail-tb` flag, which turns on traceback output for XFAIL results.

* If the `--xfail-tb` flag is not given, tracebacks for XFAIL results are NOT shown.
* The style of traceback for XFAIL is set with `--tb`, and can be `auto|long|short|line|native|no`.
* Note: Even if you have `--xfail-tb` set, you won't see them if `--tb=no`.

Some history:

With pytest 8.0, `-rx` or `-ra` would not only turn on summary reports for xfail, but also report the tracebacks for xfail results. This caused issues with some projects that utilize xfail, but don't want to see all of the xfail tracebacks.

This change detaches xfail tracebacks from `-rx`, and now we turn on xfail tracebacks with `--xfail-tb`. With this, the default `-rx`/ `-ra` behavior is identical to pre-8.0 with respect to xfail tracebacks. While this is a behavior change, it brings default behavior back to pre-8.0.0 behavior, which ultimately was considered the better course of action.

-- by :user:`okken`


- `12281 <https://github.com/pytest-dev/pytest/issues/12281>`_: Added support for keyword matching in marker expressions.

Now tests can be selected by marker keyword arguments.
Supported values are :class:`int`, (unescaped) :class:`str`, :class:`bool` & :data:`None`.

See :ref:`marker examples <marker_keyword_expression_example>` for more information.

-- by :user:`lovetheguitar`


- `12567 <https://github.com/pytest-dev/pytest/issues/12567>`_: Added ``--no-fold-skipped`` command line option.

If this option is set, then skipped tests in short summary are no longer grouped
by reason but all tests are printed individually with their nodeid in the same
way as other statuses.

-- by :user:`pbrezina`



Improvements in existing functionality
--------------------------------------

- `12469 <https://github.com/pytest-dev/pytest/issues/12469>`_: The console output now uses the "third-party plugins" terminology,
replacing the previously established but confusing and outdated
reference to :std:doc:`setuptools <setuptools:index>`
-- by :user:`webknjaz`.


- `12544 <https://github.com/pytest-dev/pytest/issues/12544>`_, `#12545 <https://github.com/pytest-dev/pytest/issues/12545>`_: Python virtual environment detection was improved by
checking for a :file:`pyvenv.cfg` file, ensuring reliable detection on
various platforms -- by :user:`zachsnickers`.


- `2871 <https://github.com/pytest-dev/pytest/issues/2871>`_: Do not truncate arguments to functions in output when running with `-vvv`.


- `389 <https://github.com/pytest-dev/pytest/issues/389>`_: The readability of assertion introspection of bound methods has been enhanced
-- by :user:`farbodahm`, :user:`webknjaz`, :user:`obestwalter`, :user:`flub`
and :user:`glyphack`.

Earlier, it was like:

.. code-block:: console

   =================================== FAILURES ===================================
   _____________________________________ test _____________________________________

       def test():
   >       assert Help().fun() == 2
   E       assert 1 == 2
   E        +  where 1 = <bound method Help.fun of <example.Help instance at 0x256a830>>()
   E        +    where <bound method Help.fun of <example.Help instance at 0x256a830>> = <example.Help instance at 0x256a830>.fun
   E        +      where <example.Help instance at 0x256a830> = Help()

   example.py:7: AssertionError
   =========================== 1 failed in 0.03 seconds ===========================


And now it's like:

.. code-block:: console

   =================================== FAILURES ===================================
   _____________________________________ test _____________________________________

       def test():
   >       assert Help().fun() == 2
   E       assert 1 == 2
   E        +  where 1 = fun()
   E        +    where fun = <test_local.Help object at 0x1074be230>.fun
   E        +      where <test_local.Help object at 0x1074be230> = Help()

   test_local.py:13: AssertionError
   =========================== 1 failed in 0.03 seconds ===========================


- `7662 <https://github.com/pytest-dev/pytest/issues/7662>`_: Added timezone information to the testsuite timestamp in the JUnit XML report.



Bug fixes
---------

- `11706 <https://github.com/pytest-dev/pytest/issues/11706>`_: Fixed reporting of teardown errors in higher-scoped fixtures when using `--maxfail` or `--stepwise`.

Originally added in pytest 8.0.0, but reverted in 8.0.2 due to a regression in pytest-xdist.
This regression was fixed in pytest-xdist 3.6.1.


- `11797 <https://github.com/pytest-dev/pytest/issues/11797>`_: :func:`pytest.approx` now correctly handles :class:`Sequence <collections.abc.Sequence>`-like objects.


- `12204 <https://github.com/pytest-dev/pytest/issues/12204>`_, `#12264 <https://github.com/pytest-dev/pytest/issues/12264>`_: Fixed a regression in pytest 8.0 where tracebacks get longer and longer when multiple
tests fail due to a shared higher-scope fixture which raised -- by :user:`bluetech`.

Also fixed a similar regression in pytest 5.4 for collectors which raise during setup.

The fix necessitated internal changes which may affect some plugins:

* ``FixtureDef.cached_result[2]`` is now a tuple ``(exc, tb)``
 instead of ``exc``.
* ``SetupState.stack`` failures are now a tuple ``(exc, tb)``
 instead of ``exc``.


- `12275 <https://github.com/pytest-dev/pytest/issues/12275>`_: Fixed collection error upon encountering an :mod:`abstract <abc>` class, including abstract `unittest.TestCase` subclasses.


- `12328 <https://github.com/pytest-dev/pytest/issues/12328>`_: Fixed a regression in pytest 8.0.0 where package-scoped parameterized items were not correctly reordered to minimize setups/teardowns in some cases.


- `12424 <https://github.com/pytest-dev/pytest/issues/12424>`_: Fixed crash with `assert testcase is not None` assertion failure when re-running unittest tests using plugins like pytest-rerunfailures. Regressed in 8.2.2.


- `12472 <https://github.com/pytest-dev/pytest/issues/12472>`_: Fixed a crash when returning category ``"error"`` or ``"failed"`` with a custom test status from :hook:`pytest_report_teststatus` hook -- :user:`pbrezina`.


- `12505 <https://github.com/pytest-dev/pytest/issues/12505>`_: Improved handling of invalid regex patterns in :func:`pytest.raises(match=r'...') <pytest.raises>` by providing a clear error message.


- `12580 <https://github.com/pytest-dev/pytest/issues/12580>`_: Fixed a crash when using the cache class on Windows and the cache directory was created concurrently.


- `6962 <https://github.com/pytest-dev/pytest/issues/6962>`_: Parametrization parameters are now compared using `==` instead of `is` (`is` is still used as a fallback if the parameter does not support `==`).
This fixes use of parameters such as lists, which have a different `id` but compare equal, causing fixtures to be re-computed instead of being cached.


- `7166 <https://github.com/pytest-dev/pytest/issues/7166>`_: Fixed progress percentages (the ``[ 87%]`` at the edge of the screen) sometimes not aligning correctly when running with pytest-xdist ``-n``.



Improved documentation
----------------------

- `12153 <https://github.com/pytest-dev/pytest/issues/12153>`_: Documented using :envvar:`PYTEST_VERSION` to detect if code is running from within a pytest run.


- `12469 <https://github.com/pytest-dev/pytest/issues/12469>`_: The external plugin mentions in the documentation now avoid mentioning
:std:doc:`setuptools entry-points <setuptools:index>` as the concept is
much more generic nowadays. Instead, the terminology of "external",
"installed", or "third-party" plugins (or packages) replaces that.

-- by :user:`webknjaz`


- `12577 <https://github.com/pytest-dev/pytest/issues/12577>`_: `CI` and `BUILD_NUMBER` environment variables role is discribed in
the reference doc. They now also appear when doing `pytest -h`
-- by :user:`MarcBresson`.



Contributor-facing changes
--------------------------

- `12467 <https://github.com/pytest-dev/pytest/issues/12467>`_: Migrated all internal type-annotations to the python3.10+ style by using the `annotations` future import.

-- by :user:`RonnyPfannschmidt`


- `11771 <https://github.com/pytest-dev/pytest/issues/11771>`_, `#12557 <https://github.com/pytest-dev/pytest/issues/12557>`_: The PyPy runtime version has been updated to 3.9 from 3.8 that introduced
a flaky bug at the garbage collector which was not expected to fix there
as the 3.8 is EoL.

-- by :user:`x612skm`


- `12493 <https://github.com/pytest-dev/pytest/issues/12493>`_: The change log draft preview integration has been refactored to use a
third party extension ``sphinxcontib-towncrier``. The previous in-repo
script was putting the change log preview file at
:file:`doc/en/_changelog_towncrier_draft.rst`. Said file is no longer
ignored in Git and might show up among untracked files in the
development environments of the contributors. To address that, the
contributors can run the following command that will clean it up:

.. code-block:: console

  $ git clean -x -i -- doc/en/_changelog_towncrier_draft.rst

-- by :user:`webknjaz`


- `12498 <https://github.com/pytest-dev/pytest/issues/12498>`_: All the undocumented ``tox`` environments now have descriptions.
They can be listed in one's development environment by invoking
``tox -av`` in a terminal.

-- by :user:`webknjaz`


- `12501 <https://github.com/pytest-dev/pytest/issues/12501>`_: The changelog configuration has been updated to introduce more accurate
audience-tailored categories. Previously, there was a ``trivial``
change log fragment type with an unclear and broad meaning. It was
removed and we now have ``contrib``, ``misc`` and ``packaging`` in
place of it.

The new change note types target the readers who are downstream
packagers and project contributors. Additionally, the miscellaneous
section is kept for unspecified updates that do not fit anywhere else.

-- by :user:`webknjaz`


- `12502 <https://github.com/pytest-dev/pytest/issues/12502>`_: The UX of the GitHub automation making pull requests to update the
plugin list has been updated. Previously, the maintainers had to close
the automatically created pull requests and re-open them to trigger the
CI runs. From now on, they only need to click the `Ready for review`
button instead.

-- by :user:`webknjaz`


- `12522 <https://github.com/pytest-dev/pytest/issues/12522>`_: The ``:pull:`` RST role has been replaced with a shorter
``:pr:`` due to starting to use the implementation from
the third-party :pypi:`sphinx-issues` Sphinx extension
-- by :user:`webknjaz`.


- `12531 <https://github.com/pytest-dev/pytest/issues/12531>`_: The coverage reporting configuration has been updated to exclude
pytest's own tests marked as expected to fail from the coverage
report. This has an effect of reducing the influence of flaky
tests on the resulting number.

-- by :user:`webknjaz`


- `12533 <https://github.com/pytest-dev/pytest/issues/12533>`_: The ``extlinks`` Sphinx extension is no longer enabled. The ``:bpo:``
role it used to declare has been removed with that. BPO itself has
migrated to GitHub some years ago and it is possible to link the
respective issues by using their GitHub issue numbers and the
``:issue:`` role that the ``sphinx-issues`` extension implements.

-- by :user:`webknjaz`


- `12562 <https://github.com/pytest-dev/pytest/issues/12562>`_: Possible typos in using the ``:user:`` RST role is now being linted
through the pre-commit tool integration -- by :user:`webknjaz`.
Links

Update pytest-asyncio from 0.23.7 to 0.23.8.

Changelog

0.23.8

- Fixes a bug that caused duplicate markers in async tests [813](https://github.com/pytest-dev/pytest-asyncio/issues/813)

Known issues
As of v0.23, pytest-asyncio attaches an asyncio event loop to each item of the test suite (i.e. session, packages, modules, classes, functions) and allows tests to be run in those loops when marked accordingly. Pytest-asyncio currently assumes that async fixture scope is correlated with the new event loop scope. This prevents fixtures from being evaluated independently from the event loop scope and breaks some existing test suites (see [706](https://github.com/pytest-dev/pytest-asyncio/issues/706)). For example, a test suite may require all fixtures and tests to run in the same event loop, but have async fixtures that are set up and torn down for each module. If you're affected by this issue, please continue using the v0.21 release, until it is resolved.
Links

Update markdown from 3.6 to 3.7.

Changelog

3.7

Changed

Refactor `abbr` Extension

A new `AbbrTreeprocessor` has been introduced, which replaces the now deprecated
`AbbrInlineProcessor`. Abbreviation processing now happens after Attribute Lists,
avoiding a conflict between the two extensions (1460).

The `AbbrPreprocessor` class has been renamed to `AbbrBlockprocessor`, which
better reflects what it is. `AbbrPreprocessor` has been deprecated.

A call to `Markdown.reset()` now clears all previously defined abbreviations.

Abbreviations are now sorted by length before executing `AbbrTreeprocessor`
to ensure that multi-word abbreviations are implemented even if an abbreviation
exists for one of those component words. (1465)

Abbreviations without a definition are now ignored. This avoids applying
abbr tags to text without a title value.

Added an optional `glossary` configuration option to the abbreviations extension.
This provides a simple and efficient way to apply a dictionary of abbreviations
to every page.

Abbreviations can now be disabled by setting their definition to `""` or `''`.
This can be useful when using the `glossary` option.


Fixed

* Fixed links to source code on GitHub from the documentation (1453).
Links

Update setuptools from 70.3.0 to 72.2.0.

Changelog

72.2.0

=======

Features
--------

- Merged with pypa/distutilsb7ee725f3 including: Support for Pathlike objects in data files and extensions (pypa/distutils272, pypa/distutils237), native support for C++ compilers (pypa/distuils228) and removed unused get_msvcr() (pypa/distutils274). (4538)

72.1.0

=======

Features
--------

- Restore the tests command and deprecate access to the module. (4519) (4520)

72.0.0

=======

Deprecations and Removals
-------------------------

- The test command has been removed. Users relying on 'setup.py test' will need to migrate to another test runner or pin setuptools before this version. (931)

71.1.0

=======

Features
--------

- Added return types to typed public functions -- by :user:`Avasam`

Marked `pkg_resources` as ``py.typed`` -- by :user:`Avasam` (4409)


Misc
----

- 4492

71.0.4

=======

Bugfixes
--------

- Removed lingering unused code around Distribution._patched_dist. (4489)

71.0.3

=======

Bugfixes
--------

- Reset the backports module when enabling vendored packages. (4476)

71.0.2

=======

Bugfixes
--------

- Include all vendored files in the sdist. (4480)

71.0.1

=======

Bugfixes
--------

- Restored package data that went missing in 71.0. This change also incidentally causes tests to be installed once again. (4475)

71.0.0

=======

Deprecations and Removals
-------------------------

- Now setuptools declares its own dependencies in the ``core`` extra. Dependencies are still vendored for bootstrapping purposes, but setuptools will prefer installed dependencies if present. The ``core`` extra is used for informational purposes and should *not* be declared in package metadata (e.g. ``build-requires``). Downstream packagers can de-vendor by simply removing the ``setuptools/_vendor`` directory. Since Setuptools now prefers installed dependencies, those installing to an environment with old, incompatible dependencies will not work. In that case, either uninstall the incompatible dependencies or upgrade them to satisfy those declared in ``core``. (2825)
Links

Update python-bidi from 0.4.2 to 0.6.0.

Changelog

0.6.0

-----

* Added implemention selection (Python or Rust) to pybidi cli,
respecting backward comapt
* Restored older algorithm, supports both implementations closes 25
* Modernize and simplify Python code (Thanks Christian Clauss)

0.5.2

-----

* Added get_base_level backward compat
* docstring cleanup

0.5.1

-------

* Added compat for older import, closes 23
* Updated copyrights

0.5.0

-----

Backwards incompatible changes!

* Switched to using Rust based unicode-bidi using PyO3
* Dropped Python < 3.9 support
* Removed "upper_is_rtl"
* Import of ``get_display`` changed to ``from bidi import get_display``
Links

Update ufo2ft from 3.2.5 to 3.2.7.

Changelog

3.2.7

- cursFeatureWriter: Remove stray print()

3.2.6

- kernFeatureWriter: Support sparse masters (859)
- cursFeatureWriter: Support multiple entry/exit anchor pairs (863)
Links

Update numpy from 2.0.0 to 2.1.0.

Changelog

2.1.0

NumPy 2.1.0 provides support for the upcoming Python 3.13 release and
drops support for Python 3.9. In addition to the usual bug fixes and
updated Python support, it helps get us back into our usual release
cycle after the extended development of 2.0. The highlights for this
release are:

-   Support for the array-api 2023.12 standard.
-   Support for Python 3.13.
-   Preliminary support for free threaded Python 3.13.

Python versions 3.10-3.13 are supported in this release.

New functions

New function `numpy.unstack`

A new function `np.unstack(array, axis=...)` was added, which splits an
array into a tuple of arrays along an axis. It serves as the inverse of
[numpy.stack]{.title-ref}.

([gh-26579](https://github.com/numpy/numpy/pull/26579))

Deprecations

-   The `fix_imports` keyword argument in `numpy.save` is deprecated.
 Since NumPy 1.17, `numpy.save` uses a pickle protocol that no longer
 supports Python 2, and ignored `fix_imports` keyword. This keyword
 is kept only for backward compatibility. It is now deprecated.

 ([gh-26452](https://github.com/numpy/numpy/pull/26452))

-   Passing non-integer inputs as the first argument of
 [bincount]{.title-ref} is now deprecated, because such inputs are
 silently cast to integers with no warning about loss of precision.

 ([gh-27076](https://github.com/numpy/numpy/pull/27076))

Expired deprecations

-   Scalars and 0D arrays are disallowed for `numpy.nonzero` and
 `numpy.ndarray.nonzero`.

 ([gh-26268](https://github.com/numpy/numpy/pull/26268))

-   `set_string_function` internal function was removed and
 `PyArray_SetStringFunction` was stubbed out.

 ([gh-26611](https://github.com/numpy/numpy/pull/26611))

C API changes

API symbols now hidden but customizable

NumPy now defaults to hide the API symbols it adds to allow all NumPy
API usage. This means that by default you cannot dynamically fetch the
NumPy API from another library (this was never possible on windows).

If you are experiencing linking errors related to `PyArray_API` or
`PyArray_RUNTIME_VERSION`, you can define the `NPY_API_SYMBOL_ATTRIBUTE`
to opt-out of this change.

If you are experiencing problems due to an upstream header including
NumPy, the solution is to make sure you
`include "numpy/ndarrayobject.h"` before their header and import NumPy
yourself based on `including-the-c-api`.

([gh-26103](https://github.com/numpy/numpy/pull/26103))

Many shims removed from npy_3kcompat.h

Many of the old shims and helper functions were removed from
`npy_3kcompat.h`. If you find yourself in need of these, vendor the
previous version of the file into your codebase.

([gh-26842](https://github.com/numpy/numpy/pull/26842))

New `PyUFuncObject` field `process_core_dims_func`

The field `process_core_dims_func` was added to the structure
`PyUFuncObject`. For generalized ufuncs, this field can be set to a
function of type `PyUFunc_ProcessCoreDimsFunc` that will be called when
the ufunc is called. It allows the ufunc author to check that core
dimensions satisfy additional constraints, and to set output core
dimension sizes if they have not been provided.

([gh-26908](https://github.com/numpy/numpy/pull/26908))

New Features

-   `numpy.reshape` and `numpy.ndarray.reshape` now support `shape` and
 `copy` arguments.

 ([gh-26292](https://github.com/numpy/numpy/pull/26292))

-   NumPy now supports DLPack v1, support for older versions will be
 deprecated in the future.

 ([gh-26501](https://github.com/numpy/numpy/pull/26501))

-   `numpy.asanyarray` now supports `copy` and `device` arguments,
 matching `numpy.asarray`.

 ([gh-26580](https://github.com/numpy/numpy/pull/26580))

-   `numpy.printoptions`, `numpy.get_printoptions`, and
 `numpy.set_printoptions` now support a new option, `override_repr`,
 for defining custom `repr(array)` behavior.

 ([gh-26611](https://github.com/numpy/numpy/pull/26611))

-   `numpy.cumulative_sum` and `numpy.cumulative_prod` were added as
 Array API compatible alternatives for `numpy.cumsum` and
 `numpy.cumprod`. The new functions can include a fixed initial
 (zeros for `sum` and ones for `prod`) in the result.

 ([gh-26724](https://github.com/numpy/numpy/pull/26724))

-   `numpy.clip` now supports `max` and `min` keyword arguments which
 are meant to replace `a_min` and `a_max`. Also, for `np.clip(a)` or
 `np.clip(a, None, None)` a copy of the input array will be returned
 instead of raising an error.

 ([gh-26724](https://github.com/numpy/numpy/pull/26724))

-   `numpy.astype` now supports `device` argument.

 ([gh-26724](https://github.com/numpy/numpy/pull/26724))

`f2py` can generate freethreading-compatible C extensions

Pass `--freethreading-compatible` to the f2py CLI tool to produce a C
extension marked as compatible with the free threading CPython
interpreter. Doing so prevents the interpreter from re-enabling the GIL
at runtime when it imports the C extension. Note that `f2py` does not
analyze fortran code for thread safety, so you must verify that the
wrapped fortran code is thread safe before marking the extension as
compatible.

([gh-26981](https://github.com/numpy/numpy/pull/26981))

Improvements

`histogram` auto-binning now returns bin sizes \>=1 for integer input data

For integer input data, bin sizes smaller than 1 result in spurious
empty bins. This is now avoided when the number of bins is computed
using one of the algorithms provided by `histogram_bin_edges`.

([gh-12150](https://github.com/numpy/numpy/pull/12150))

`ndarray` shape-type parameter is now covariant and bound to `tuple[int, ...]`

Static typing for `ndarray` is a long-term effort that continues with
this change. It is a generic type with type parameters for the shape and
the data type. Previously, the shape type parameter could be any value.
This change restricts it to a tuple of ints, as one would expect from
using `ndarray.shape`. Further, the shape-type parameter has been
changed from invariant to covariant. This change also applies to the
subtypes of `ndarray`, e.g. `numpy.ma.MaskedArray`. See the [typing
docs](https://typing.readthedocs.io/en/latest/reference/generics.html#variance-of-generic-types)
for more information.

([gh-26081](https://github.com/numpy/numpy/pull/26081))

`np.quantile` with method `closest_observation` chooses nearest even order statistic

This changes the definition of nearest for border cases from the nearest
odd order statistic to nearest even order statistic. The numpy
implementation now matches other reference implementations.

([gh-26656](https://github.com/numpy/numpy/pull/26656))

`lapack_lite` is now thread safe

NumPy provides a minimal low-performance version of LAPACK named
`lapack_lite` that can be used if no BLAS/LAPACK system is detected at
build time.

Until now, `lapack_lite` was not thread safe. Single-threaded use cases
did not hit any issues, but running linear algebra operations in
multiple threads could lead to errors, incorrect results, or segfaults
due to data races.

We have added a global lock, serializing access to `lapack_lite` in
multiple threads.

([gh-26750](https://github.com/numpy/numpy/pull/26750))

The `numpy.printoptions` context manager is now thread and async-safe

In prior versions of NumPy, the printoptions were defined using a
combination of Python and C global variables. We have refactored so the
state is stored in a python `ContextVar`, making the context manager
thread and async-safe.

([gh-26846](https://github.com/numpy/numpy/pull/26846))

Performance improvements and changes

-   `numpy.save` now uses pickle protocol version 4 for saving arrays
 with object dtype, which allows for pickle objects larger than 4GB
 and improves saving speed by about 5% for large arrays.

 ([gh-26388](https://github.com/numpy/numpy/pull/26388))

-   OpenBLAS on x86_64 and i686 is built with fewer kernels. Based on
 benchmarking, there are 5 clusters of performance around these
 kernels: `PRESCOTT NEHALEM SANDYBRIDGE HASWELL SKYLAKEX`.

 ([gh-27147](https://github.com/numpy/numpy/pull/27147))

-   OpenBLAS on windows is linked without quadmath, simplifying
 licensing

 ([gh-27147](https://github.com/numpy/numpy/pull/27147))

-   Due to a regression in OpenBLAS on windows, the performance
 improvements when using multiple threads for OpenBLAS 0.3.26 were
 reverted.

 ([gh-27147](https://github.com/numpy/numpy/pull/27147))

`ma.cov` and `ma.corrcoef` are now significantly faster

The private function has been refactored along with `ma.cov` and
`ma.corrcoef`. They are now significantly faster, particularly on large,
masked arrays.

([gh-26285](https://github.com/numpy/numpy/pull/26285))

Changes

-   As `numpy.vecdot` is now a ufunc it has a less precise signature.
 This is due to the limitations of ufunc\'s typing stub.

 ([gh-26313](https://github.com/numpy/numpy/pull/26313))

-   `numpy.floor`, `numpy.ceil`, and `numpy.trunc` now won\'t perform
 casting to a floating dtype for integer and boolean dtype input
 arrays.

 ([gh-26766](https://github.com/numpy/numpy/pull/26766))

`ma.corrcoef` may return a slightly different result

A pairwise observation approach is currently used in `ma.corrcoef` to
calculate the standard deviations for each pair of variables. This has
been changed as it is being used to normalise the covariance, estimated
using `ma.cov`, which does not consider the observations for each
variable in a pairwise manner, rendering it unnecessary. The
normalisation has been replaced by the more appropriate standard
deviation for each variable, which significantly reduces the wall time,
but will return slightly different estimates of the correlation
coefficients in cases where the observations between a pair of variables
are not aligned. However, it will return the same estimates in all other
cases, including returning the same correlation matrix as `corrcoef`
when using a masked array with no masked values.

([gh-26285](https://github.com/numpy/numpy/pull/26285))

Cast-safety fixes in `copyto` and `full`

`copyto` now uses NEP 50 correctly and applies this to its cast safety.
Python integer to NumPy integer casts and Python float to NumPy float
casts are now considered \"safe\" even if assignment may fail or
precision may be lost. This means the following examples change
slightly:

-   

 `np.copyto(int8_arr, 1000)` previously performed an unsafe/same-kind cast

 :   of the Python integer. It will now always raise, to achieve an
     unsafe cast you must pass an array or NumPy scalar.

-   `np.copyto(uint8_arr, 1000, casting="safe")` will raise an
 OverflowError rather than a TypeError due to same-kind casting.

-   `np.copyto(float32_arr, 1e300, casting="safe")` will overflow to
 `inf` (float32 cannot hold `1e300`) rather raising a TypeError.

Further, only the dtype is used when assigning NumPy scalars (or 0-d
arrays), meaning that the following behaves differently:

-   `np.copyto(float32_arr, np.float64(3.0), casting="safe")` raises.
-   `np.coptyo(int8_arr, np.int64(100), casting="safe")` raises.
 Previously, NumPy checked whether the 100 fits the `int8_arr`.

This aligns `copyto`, `full`, and `full_like` with the correct NumPy 2
behavior.

([gh-27091](https://github.com/numpy/numpy/pull/27091))

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2.0.1

discovered after the 2.0.0 release. NumPy 2.0.1 is the last planned
release in the 2.0.x series, 2.1.0rc1 should be out shortly.

The Python versions supported by this release are 3.9-3.12.

**_NOTE:_**  Do not use the GitHub generated "Source code" files listed in the "Assets", they are garbage.

Improvements

`np.quantile` with method `closest_observation` chooses nearest even order statistic

This changes the definition of nearest for border cases from the nearest
odd order statistic to nearest even order statistic. The numpy
implementation now matches other reference implementations.

([gh-26656](https://github.com/numpy/numpy/pull/26656))

Contributors

A total of 15 people contributed to this release. People with a \"+\" by
their names contributed a patch for the first time.

-   \vahidmech +
-   Alex Herbert +
-   Charles Harris
-   Giovanni Del Monte +
-   Leo Singer
-   Lysandros Nikolaou
-   Matti Picus
-   Nathan Goldbaum
-   Patrick J. Roddy +
-   Raghuveer Devulapalli
-   Ralf Gommers
-   Rostan Tabet +
-   Sebastian Berg
-   Tyler Reddy
-   Yannik Wicke +

Pull requests merged

A total of 24 pull requests were merged for this release.

-   [26711](https://github.com/numpy/numpy/pull/26711): MAINT: prepare 2.0.x for further development
-   [26792](https://github.com/numpy/numpy/pull/26792): TYP: fix incorrect import in `ma/extras.pyi` stub
-   [26793](https://github.com/numpy/numpy/pull/26793): DOC: Mention \'1.25\' legacy printing mode in `set_printoptions`
-   [26794](https://github.com/numpy/numpy/pull/26794): DOC: Remove mention of NaN and NAN aliases from constants
-   [26821](https://github.com/numpy/numpy/pull/26821): BLD: Fix x86-simd-sort build failure on openBSD
-   [26822](https://github.com/numpy/numpy/pull/26822): BUG: Ensure output order follows input in numpy.fft
-   [26823](https://github.com/numpy/numpy/pull/26823): TYP: fix missing sys import in numeric.pyi
-   [26832](https://github.com/numpy/numpy/pull/26832): DOC: remove hack to override \_add_newdocs_scalars
-   [26835](https://github.com/numpy/numpy/pull/26835): BUG: avoid side-effect of \'include complex.h\'
-   [26836](https://github.com/numpy/numpy/pull/26836): BUG: fix max_rows and chunked string/datetime reading in `loadtxt`
-   [26837](https://github.com/numpy/numpy/pull/26837): BUG: fix PyArray_ImportNumPyAPI under -Werror=strict-prototypes
-   [26856](https://github.com/numpy/numpy/pull/26856): DOC: Update some documentation
-   [26868](https://github.com/numpy/numpy/pull/26868): BUG: fancy indexing copy
-   [26869](https://github.com/numpy/numpy/pull/26869): BUG: Mismatched allocation domains in `PyArray_FillWithScalar`
-   [26870](https://github.com/numpy/numpy/pull/26870): BUG: Handle \--f77flags and \--f90flags for meson \[wheel build\]
-   [26887](https://github.com/numpy/numpy/pull/26887): BUG: Fix new DTypes and new string promotion when signature is\...
-   [26888](https://github.com/numpy/numpy/pull/26888): BUG: remove numpy.f2py from excludedimports
-   [26959](https://github.com/numpy/numpy/pull/26959): BUG: Quantile closest_observation to round to nearest even order
-   [26960](https://github.com/numpy/numpy/pull/26960): BUG: Fix off-by-one error in amount of characters in strip
-   [26961](https://github.com/numpy/numpy/pull/26961): API: Partially revert unique with return_inverse
-   [26962](https://github.com/numpy/numpy/pull/26962): BUG,MAINT: Fix utf-8 character stripping memory access
-   [26963](https://github.com/numpy/numpy/pull/26963): BUG: Fix out-of-bound minimum offset for in1d table method
-   [26971](https://github.com/numpy/numpy/pull/26971): BUG: fix f2py tests to work with v2 API
-   [26995](https://github.com/numpy/numpy/pull/26995): BUG: Add object cast to avoid warning with limited API

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Closing this in favor of #428

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@justvanrossum justvanrossum deleted the pyup-scheduled-update-2024-08-19 branch August 26, 2024 17:14
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