LoadError: invalid subtyping in definition of JuMPArray - julia-v0.6.2

[mandarup]

JuMP fails to load on julia-v0.6.2

• OS: linux(ubuntu)

julia> using JuMP


WARNING: deprecated syntax "abstract AbstractModel" at ~/.julia/v0.6/JuMP/src/JuMP.jl:70.
Use "abstract type AbstractModel end" instead.

WARNING: deprecated syntax "abstract AbstractConstraint" at ~/.julia/v0.6/JuMP/src/JuMP.jl:321.
Use "abstract type AbstractConstraint end" instead.

WARNING: deprecated syntax "abstract AbstractJuMPScalar" at ~/.julia/v0.6/JuMP/src/JuMP.jl:324.
Use "abstract type AbstractJuMPScalar end" instead.

WARNING: deprecated syntax "typealias LinConstrRef ConstraintRef{Model,LinearConstraint}" at ~/.julia/v0.6/JuMP/src/JuMP.jl:539.
Use "const LinConstrRef = ConstraintRef{Model,LinearConstraint}" instead.

WARNING: deprecated syntax "typealias JuMPTypes Union{AbstractJuMPScalar,NonlinearExpression,Norm,GenericAffExpr,QuadExpr,SOCExpr}" at ~/.julia/v0.6/JuMP/src/JuMP.jl:752.
Use "const JuMPTypes = Union{AbstractJuMPScalar,NonlinearExpression,Norm,GenericAffExpr,QuadExpr,SOCExpr}" instead.

WARNING: deprecated syntax "typealias JuMPScalars Union{Number,JuMPTypes}" at ~/.julia/v0.6/JuMP/src/JuMP.jl:753.
Use "const JuMPScalars = Union{Number,JuMPTypes}" instead.
INFO: Precompiling module JuMP.

WARNING: deprecated syntax "abstract AbstractModel" at ~/.julia/v0.6/JuMP/src/JuMP.jl:70.
Use "abstract type AbstractModel end" instead.

WARNING: deprecated syntax "abstract AbstractConstraint" at ~/.julia/v0.6/JuMP/src/JuMP.jl:321.
Use "abstract type AbstractConstraint end" instead.

WARNING: deprecated syntax "abstract AbstractJuMPScalar" at ~/.julia/v0.6/JuMP/src/JuMP.jl:324.
Use "abstract type AbstractJuMPScalar end" instead.

WARNING: deprecated syntax "typealias LinConstrRef ConstraintRef{Model,LinearConstraint}" at ~/.julia/v0.6/JuMP/src/JuMP.jl:539.
Use "const LinConstrRef = ConstraintRef{Model,LinearConstraint}" instead.

WARNING: deprecated syntax "typealias JuMPTypes Union{AbstractJuMPScalar,NonlinearExpression,Norm,GenericAffExpr,QuadExpr,SOCExpr}" at ~/.julia/v0.6/JuMP/src/JuMP.jl:752.
Use "const JuMPTypes = Union{AbstractJuMPScalar,NonlinearExpression,Norm,GenericAffExpr,QuadExpr,SOCExpr}" instead.

WARNING: deprecated syntax "typealias JuMPScalars Union{Number,JuMPTypes}" at ~/.julia/v0.6/JuMP/src/JuMP.jl:753.
Use "const JuMPScalars = Union{Number,JuMPTypes}" instead.
WARNING: Method definition sqrt(ForwardDiff.Dual{N, T} where T<:Real) in module ForwardDiff at ~/.julia/v0.6/ForwardDiff/src/dual.jl:281 overwritten at ~/.julia/v0.6/ForwardDiff/src/dual.jl:311.
WARNING: Method definition exp(ForwardDiff.Dual{N, T} where T<:Real) in module ForwardDiff at ~/.julia/v0.6/ForwardDiff/src/dual.jl:281 overwritten at ~/.julia/v0.6/ForwardDiff/src/dual.jl:306.

WARNING: deprecated syntax "abstract JuMPContainer{T,N}" at ~/.julia/v0.6/JuMP/src/JuMPContainer.jl:10.
Use "abstract type JuMPContainer{T,N} end" instead.
ERROR: LoadError: LoadError: LoadError: invalid subtyping in definition of JuMPArray
Stacktrace:
 [1] include_from_node1(::String) at ./loading.jl:576
 [2] include(::String) at ./sysimg.jl:14
 [3] include_from_node1(::String) at ./loading.jl:576
 [4] include(::String) at ./sysimg.jl:14
 [5] include_from_node1(::String) at ./loading.jl:576
 [6] include(::String) at ./sysimg.jl:14
 [7] anonymous at ./<missing>:2
while loading ~/.julia/v0.6/JuMP/src/JuMPArray.jl, in expression starting on line 6
while loading ~/.julia/v0.6/JuMP/src/JuMPContainer.jl, in expression starting on line 11
while loading ~/.julia/v0.6/JuMP/src/JuMP.jl, in expression starting on line 63
ERROR: Failed to precompile JuMP to ~/.julia/lib/v0.6/JuMP.ji.
Stacktrace:
 [1] compilecache(::String) at ./loading.jl:710
 [2] _require(::Symbol) at ./loading.jl:497
 [3] require(::Symbol) at ./loading.jl:405

[joehuchette]

Which version of JuMP? (Pkg.status())

[mandarup]

JuMP-v0.14.2
I see that release version is at 0.18 , but Pkg.update() does not do anything

[joehuchette]

v0.14.2 is very old, intended to work with julia v0.4. Is your version "dirty" (i.e. you've made local changes; it would show in the output of Pkg.status). You can try Pkg.free("JuMP") as well.

[mandarup]

Well, I downloaded julia binary from julia website, and JuMP came with it, so I don't know how it could be dirty.

I tried to clone latest package version as per https://groups.google.com/d/msg/julia-users/weuldy7w7Ew/MnYR6nQM_ngJ, but that gives:

julia>Pkg.rm("JuMP")
INFO: Removing JuMP (unregistered)

julia> Pkg.clone("https://github.com/JuliaOpt/JuMP.jl.git")
INFO: Cloning JuMP from https://github.com/JuliaOpt/JuMP.jl.git
INFO: Computing changes...
ERROR: JuMPeR can't be installed because it has no versions that support 0.6.2 of julia. You may need to update METADATA by running `Pkg.update()`
Stacktrace:
 [1] resolve(::Dict{String,Base.Pkg.Types.VersionSet}, ::Dict{String,Dict{VersionNumber,Base.Pkg.Types.Available}}, ::Dict{String,Tuple{VersionNumber,Bool}}, ::Dict{String,Base.Pkg.Types.Fixed}, ::Dict{String,VersionNumber}, ::Set{String}) at ./pkg/entry.jl:486
 [2] resolve(::Dict{String,Base.Pkg.Types.VersionSet}, ::Dict{String,Dict{VersionNumber,Base.Pkg.Types.Available}}, ::Dict{String,Tuple{VersionNumber,Bool}}, ::Dict{String,Base.Pkg.Types.Fixed}) at ./pkg/entry.jl:479
 [3] edit(::Function, ::SubString{String}) at ./pkg/entry.jl:30
 [4] clone(::String, ::SubString{String}) at ./pkg/entry.jl:203
 [5] (::Base.Pkg.Dir.##4#7{Array{Any,1},Base.Pkg.Entry.#clone,Tuple{String}})() at ./pkg/dir.jl:36
 [6] cd(::Base.Pkg.Dir.##4#7{Array{Any,1},Base.Pkg.Entry.#clone,Tuple{String}}, ::String) at ./file.jl:70
 [7] #cd#1(::Array{Any,1}, ::Function, ::Function, ::String, ::Vararg{String,N} where N) at ./pkg/dir.jl:36
 [8] clone(::String) at ./pkg/pkg.jl:169

[mandarup]

also, Pkg.free("JuMP") leads to:

julia> Pkg.free("JuMP")
INFO: Freeing JuMP
INFO: Downgrading JuMP: v0.18.0 => v0.14.2

[joehuchette]

? I don't know why JuMP would come preinstalled. Can you post the entire output from Pkg.status()

[mandarup]

julia> Pkg.status()
9 required packages:
 - Atom                          0.6.6
 - CSV                           0.1.5
 - Cbc                           0.3.2
 - Clp                           0.3.1
 - IJulia                        1.6.2
 - Ipopt                         0.2.6
 - JuMPeR                        0.5.0
 - MLDataUtils                   0.2.0
 - TensorFlow                    0.7.5
71 additional packages:
 - ASTInterpreter2               0.1.1
 - AutoHashEquals                0.2.0
 - BinDeps                       0.8.2
 - Blink                         0.5.4
 - Blosc                         0.3.0
 - Calculus                      0.2.2
 - CategoricalArrays             0.1.6
 - CodeTools                     0.4.7
 - Codecs                        0.4.0
 - Compat                        0.41.0
 - Conda                         0.7.1
 - DataArrays                    0.6.2
 - DataFrames                    0.10.1
 - DataStreams                   0.1.3
 - DataStructures                0.7.3
 - DebuggerFramework             0.1.2
 - DiffBase                      0.2.0
 - Distances                     0.5.0
 - Distributions                 0.15.0
 - DocSeeker                     0.1.0
 - FileIO                        0.6.1
 - ForwardDiff                   0.2.5
 - GZip                          0.3.0
 - HDF5                          0.8.8
 - Hiccup                        0.1.1
 - HttpCommon                    0.3.0
 - HttpParser                    0.3.0
 - HttpServer                    0.2.0
 - IterTools                     0.2.0
 - JLD                           0.8.3
 - JSON                          0.16.3
 - JuMP                          0.14.2
 - Juno                          0.3.2
 - LNR                           0.0.2
 - Lazy                          0.12.0
 - LearnBase                     0.1.6
 - LegacyStrings                 0.3.0
 - MLDataPattern                 0.3.0
 - MLLabelUtils                  0.2.0
 - MNIST                         0.0.2
 - MacroTools                    0.4.0
 - MappedArrays                  0.0.7
 - MathProgBase                  0.5.10
 - MbedTLS                       0.5.2
 - Media                         0.3.0
 - Mustache                      0.3.0
 - Mux                           0.2.3
 - NaNMath                       0.3.0
 - NullableArrays                0.1.2
 - Nullables                     0.0.2
 - PDMats                        0.8.0
 - ProtoBuf                      0.4.0
 - PyCall                        1.15.0
 - QuadGK                        0.2.0
 - Reexport                      0.0.3
 - Requires                      0.4.3
 - ReverseDiffSparse             0.5.8
 - Rmath                         0.3.1
 - SHA                           0.5.2
 - ShowItLikeYouBuildIt          0.2.0
 - SortingAlgorithms             0.2.0
 - SpecialFunctions              0.3.6
 - StatsBase                     0.19.4
 - StatsFuns                     0.5.0
 - StringDistances               0.2.0
 - TakingBroadcastSeriously      0.1.1
 - Tokenize                      0.4.2
 - URIParser                     0.3.0
 - WeakRefStrings                0.2.0
 - WebSockets                    0.4.0
 - ZMQ                           0.5.1

[joehuchette]

I believe the problem is with JuMPeR (ref IainNZ/JuMPeR.jl#78), which doesn't support newer version of JuMP. You can try Pkg.checkout("JuMPeR") and Pkg.update(), but I can't guarantee that will work.

Closing since this ins't a JuMP issue.